AlfalfaGEDB | MS.gene072364

M. sativa cultivar XinJiangDaYe / MS.gene072364

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	XP_003625199.1	90.9	252	21	1	1	252	55	304	1.80E-119	438.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	Q66GR3	48.6	222	95	6	40	252	129	340	2.3e-35	150.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	A0A072U3D5	90.9	252	21	1	1	252	55	304	1.3e-119	438.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene072364.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051127	MS.gene072364	0.800249	1.57E-48	-1.69E-46
MS.gene051138	MS.gene072364	0.803962	2.71E-49	-1.69E-46
MS.gene051364	MS.gene072364	0.802862	4.59E-49	-1.69E-46
MS.gene051366	MS.gene072364	0.81182	5.78E-51	-1.69E-46
MS.gene051367	MS.gene072364	0.807741	4.36E-50	-1.69E-46
MS.gene051410	MS.gene072364	0.80046	1.43E-48	-1.69E-46
MS.gene053420	MS.gene072364	0.819974	8.76E-53	-1.69E-46
MS.gene055202	MS.gene072364	0.817536	3.13E-52	-1.69E-46
MS.gene055942	MS.gene072364	0.804158	2.47E-49	-1.69E-46
MS.gene056856	MS.gene072364	0.809498	1.84E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	MTR_7g092540	90.873	252	21	1	1	252	55	304	1.30e-169	471
MS.gene072364.t1	MTR_7g092540	90.873	252	21	1	1	252	55	304	3.05e-169	469
MS.gene072364.t1	MTR_1g052470	56.175	251	74	5	32	252	115	359	8.27e-78	240
MS.gene072364.t1	MTR_1g052470	51.208	207	65	5	32	208	115	315	2.32e-49	165
MS.gene072364.t1	MTR_2g098310	42.688	253	94	9	35	252	157	393	3.35e-45	156
MS.gene072364.t1	MTR_2g098310	42.688	253	94	9	35	252	157	393	4.16e-45	156
MS.gene072364.t1	MTR_6g052280	84.706	85	13	0	150	234	13	97	5.98e-44	145
MS.gene072364.t1	MTR_4g065870	38.710	248	119	6	33	252	174	416	2.11e-43	152
MS.gene072364.t1	MTR_4g065870	38.710	248	119	6	33	252	174	416	3.32e-43	152
MS.gene072364.t1	MTR_2g098310	37.413	286	93	10	35	250	157	426	3.08e-38	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	AT2G42280	48.673	226	97	6	36	252	125	340	5.98e-43	149
MS.gene072364.t1	AT2G42280	48.673	226	97	6	36	252	125	340	1.22e-42	149
MS.gene072364.t1	AT2G43140	62.766	94	34	1	160	252	102	195	1.58e-33	121
MS.gene072364.t1	AT1G51140	58.333	108	38	3	145	252	265	365	2.08e-33	124
MS.gene072364.t1	AT2G43140	62.766	94	34	1	160	252	199	292	7.74e-33	122
MS.gene072364.t1	AT1G05805	62.366	93	33	2	161	252	253	344	1.10e-29	114
MS.gene072364.t1	AT1G35460	70.000	70	21	0	183	252	173	242	1.54e-28	109
MS.gene072364.t1	AT4G09180	67.105	76	23	1	177	252	172	245	3.66e-27	105
MS.gene072364.t1	AT1G35460	76.596	47	11	0	183	229	173	219	9.58e-19	82.4
MS.gene072364.t1	AT2G24260	52.778	72	33	1	181	252	25	95	2.33e-15	73.6

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Find 51 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGGAGTGATGGCAT+TGG	0.578334	7.2:-16409891	MS.gene072364:CDS
AAAGGAGATGATGTTGTTGT+TGG	0.459546	7.2:+16410842	None:intergenic
AAAGGTGTTGAAAACTATGA+TGG	0.487777	7.2:-16410023	MS.gene072364:CDS
AACAACAACATCATCTCCTT+TGG	0.393746	7.2:-16410840	MS.gene072364:CDS
AACATATTGAACAATCAAAT+TGG	0.290694	7.2:-16409963	MS.gene072364:CDS
AACATCATCTCCTTTGGAAA+TGG	0.414195	7.2:-16410834	MS.gene072364:intron
AACTCTAAAACGAGGAGTGA+TGG	0.547308	7.2:-16409897	MS.gene072364:CDS
AAGACAAGGAGGTAGCAATG+AGG	0.720936	7.2:-16409847	MS.gene072364:CDS
AAGACACATGAATTCTCAGC+AGG	0.502231	7.2:-16410940	MS.gene072364:CDS
AAGGTGTTGAAAACTATGAT+GGG	0.612325	7.2:-16410022	MS.gene072364:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTTAACCTGTTATATACC+TGG	+	chr7.2:16410531-16410550	None:intergenic	30.0%
AAGTTATTTATGTACAAGGG+AGG	-	chr7.2:16410030-16410049	MS.gene072364:CDS	30.0%
AATGAGGATGCTCAATATTA+TGG	-	chr7.2:16410478-16410497	MS.gene072364:intron	30.0%
AATTGCGAATCAGCAAAATT+AGG	+	chr7.2:16410589-16410608	None:intergenic	30.0%
ATTCTGACCTTATCAATGTT+TGG	+	chr7.2:16410848-16410867	None:intergenic	30.0%
CATTTATGATTCTAATGACC+AGG	-	chr7.2:16410510-16410529	MS.gene072364:intron	30.0%
CTAATGTGATTCATATTGCT+AGG	+	chr7.2:16410204-16410223	None:intergenic	30.0%
GATTCAAATCATGAGATAGT+AGG	-	chr7.2:16410119-16410138	MS.gene072364:intron	30.0%
GTTATGTGATAACATTCTCA+AGG	+	chr7.2:16410395-16410414	None:intergenic	30.0%
TACTACAATACCATTTCCAA+AGG	+	chr7.2:16409488-16409507	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	16409307	16411024	16409307	ID=MS.gene072364
chr7.2	mRNA	16409307	16411024	16409307	ID=MS.gene072364.t1;Parent=MS.gene072364
chr7.2	exon	16410835	16411024	16410835	ID=MS.gene072364.t1.exon1;Parent=MS.gene072364.t1
chr7.2	CDS	16410835	16411024	16410835	ID=cds.MS.gene072364.t1;Parent=MS.gene072364.t1
chr7.2	exon	16409800	16410059	16409800	ID=MS.gene072364.t1.exon2;Parent=MS.gene072364.t1
chr7.2	CDS	16409800	16410059	16409800	ID=cds.MS.gene072364.t1;Parent=MS.gene072364.t1
chr7.2	exon	16409472	16409708	16409472	ID=MS.gene072364.t1.exon3;Parent=MS.gene072364.t1
chr7.2	CDS	16409472	16409708	16409472	ID=cds.MS.gene072364.t1;Parent=MS.gene072364.t1
chr7.2	exon	16409307	16409375	16409307	ID=MS.gene072364.t1.exon4;Parent=MS.gene072364.t1
chr7.2	CDS	16409307	16409375	16409307	ID=cds.MS.gene072364.t1;Parent=MS.gene072364.t1

Gene Sequence

>MS.gene072364

ATGGACCATAATCCTTTTAATCATAAAGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGTATTGTAGTACTTTTTCTATTTCTGTTTTTTGTCTTGATTTTGACTTTTTTGTTCAATGATTTAATTTCTTCTAGACAACTTTTTAGGCTAGTTCAATGTTTCTTTTGGGGGCTGTCCCTACACTTTCTTAAAATAGAATTTGAAATTATAATTAATATTTTGTGCTCAAGAAATAGAGTGCAATTTTTTGTGAATATAGTGGTCAGCTAAGGTTTGGTCCAACACAAGATACAATTTTAGTCATCGTAGAGAGACATTTGCATTTAGTGTTAAATGACTTTTGGAAATTAAAACATAACTTTTTTTAGGACAGACATGTTGCTAAATCTAAAAAAAAAATGGGAGCTAAATCAATTTTTTTTTATCATTAAGAATAGAATTCGGAATTTTGAGTTTACAACACTCACACATACTATGCACCAACGAATAGCGTTAGAATTAGATAGATTGTATTTCATTGTAGTTACATGGATATTCAACATAAATATATAACGTATACATAAGTTATTTATGTGTGTAACAAAAAAAAAAAAGTTATTTATGTACAAGGGAGGCATTTATGTCTAATTATTATTTTTTTTAACAATTTCTGTCTAATTTATGGTTGTTTATAATTTGCTGATTCAAATCATGAGATAGTAGGACTTAATTCCACAAATGCTAAACAAGCATAGGTGGATTCATTCTCTGAAGATTTATTTACCTAGCAATATGAATCACATTAGATTTTCACATTTTTAAACATTATTTATGCATATAAATGTAAATTGCAGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGGTCATAAATTCATTTATGATTCTAATGACCAGGTATATAACAGGTTAACTTTTTTTTTTTTATTAGGCCTAAATGCAATTTTGTCTCCTAATTTTGCTGATTCGCAATTTTGATGTTACTCAGAACGTAGGGGTACGAAATCAAGTTGATACACTATCACATCAGTTGAGTTTGCCAAGAAAATCATCAGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGGTCAGAATCATCATCACACAGTTGTTGATTTTTTCCCCCTTTTAAGACAATTATGTTTTTGTGTTTAGAAAGTTAAACATTGTTTAATTTTGGCAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAG

Protein sequence

>MS.gene072364.t1

MDHNPFNHKGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYGHKFIYDSNDQNVGVRNQVDTLSHQLSLPRKSSEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLK