AlfalfaGEDB | MS.gene072364

M. sativa cultivar XinJiangDaYe / MS.gene072364

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	XP_003625199.1	90.9	252	21	1	1	252	55	304	1.80E-119	438.7

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	Q66GR3	48.6	222	95	6	40	252	129	340	2.3e-35	150.6

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	A0A072U3D5	90.9	252	21	1	1	252	55	304	1.3e-119	438.7

TFs/TRs:

Gene ID	Type	Classification
MS.gene072364.t1	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051127	MS.gene072364	0.800249	1.57E-48	-1.69E-46
MS.gene051138	MS.gene072364	0.803962	2.71E-49	-1.69E-46
MS.gene051364	MS.gene072364	0.802862	4.59E-49	-1.69E-46
MS.gene051366	MS.gene072364	0.81182	5.78E-51	-1.69E-46
MS.gene051367	MS.gene072364	0.807741	4.36E-50	-1.69E-46
MS.gene051410	MS.gene072364	0.80046	1.43E-48	-1.69E-46
MS.gene053420	MS.gene072364	0.819974	8.76E-53	-1.69E-46
MS.gene055202	MS.gene072364	0.817536	3.13E-52	-1.69E-46
MS.gene055942	MS.gene072364	0.804158	2.47E-49	-1.69E-46
MS.gene056856	MS.gene072364	0.809498	1.84E-50	-1.69E-46
MS.gene057768	MS.gene072364	0.822592	2.18E-53	-1.69E-46
MS.gene058109	MS.gene072364	0.804496	2.10E-49	-1.69E-46
MS.gene058111	MS.gene072364	0.836157	1.10E-56	-1.69E-46
MS.gene058171	MS.gene072364	0.838559	2.68E-57	-1.69E-46
MS.gene058173	MS.gene072364	0.834106	3.63E-56	-1.69E-46
MS.gene058175	MS.gene072364	0.845565	3.75E-59	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	MTR_7g092540	90.873	252	21	1	1	252	55	304	1.30e-169	471
MS.gene072364.t1	MTR_7g092540	90.873	252	21	1	1	252	55	304	3.05e-169	469
MS.gene072364.t1	MTR_1g052470	56.175	251	74	5	32	252	115	359	8.27e-78	240
MS.gene072364.t1	MTR_1g052470	51.208	207	65	5	32	208	115	315	2.32e-49	165
MS.gene072364.t1	MTR_2g098310	42.688	253	94	9	35	252	157	393	3.35e-45	156
MS.gene072364.t1	MTR_2g098310	42.688	253	94	9	35	252	157	393	4.16e-45	156
MS.gene072364.t1	MTR_6g052280	84.706	85	13	0	150	234	13	97	5.98e-44	145
MS.gene072364.t1	MTR_4g065870	38.710	248	119	6	33	252	174	416	2.11e-43	152
MS.gene072364.t1	MTR_4g065870	38.710	248	119	6	33	252	174	416	3.32e-43	152
MS.gene072364.t1	MTR_2g098310	37.413	286	93	10	35	250	157	426	3.08e-38	139
MS.gene072364.t1	MTR_3g028520	39.286	224	119	4	40	252	166	383	1.21e-37	136
MS.gene072364.t1	MTR_3g027650	39.286	224	119	4	40	252	166	383	1.21e-37	136
MS.gene072364.t1	MTR_3g027650	39.286	224	119	4	40	252	166	383	1.35e-37	136
MS.gene072364.t1	MTR_2g098310	39.316	234	91	9	35	233	157	374	1.34e-32	123
MS.gene072364.t1	MTR_4g033295	76.471	68	16	0	185	252	112	179	2.05e-30	112
MS.gene072364.t1	MTR_8g036235	34.237	295	130	5	2	252	103	377	2.16e-30	117
MS.gene072364.t1	MTR_4g033295	76.471	68	16	0	185	252	112	179	4.07e-30	111
MS.gene072364.t1	MTR_4g065870	33.624	229	120	4	33	232	174	399	5.00e-30	116
MS.gene072364.t1	MTR_1g116790	55.556	108	45	2	146	252	221	326	4.16e-29	112
MS.gene072364.t1	MTR_3g027650	35.323	201	113	4	40	229	166	360	2.69e-24	100
MS.gene072364.t1	MTR_4g033295	84.444	45	7	0	185	229	112	156	3.19e-20	85.5
MS.gene072364.t1	MTR_2g098310	34.742	213	88	9	31	208	153	349	2.28e-18	83.6
MS.gene072364.t1	MTR_8g036235	31.716	268	127	5	2	229	103	354	2.94e-18	83.6
MS.gene072364.t1	MTR_1g017350	54.839	62	28	0	191	252	260	321	5.31e-15	74.3
MS.gene072364.t1	MTR_1g017350	54.839	62	28	0	191	252	260	321	5.75e-15	73.9
MS.gene072364.t1	MTR_1g017350	54.839	62	28	0	191	252	260	321	5.94e-15	73.9
MS.gene072364.t1	MTR_1g017350	54.839	62	28	0	191	252	260	321	6.31e-15	73.9
MS.gene072364.t1	MTR_4g131160	56.452	62	26	1	191	252	196	256	7.49e-15	73.6
MS.gene072364.t1	MTR_4g131160	56.452	62	26	1	191	252	199	259	7.93e-15	73.6
MS.gene072364.t1	MTR_1g080890	52.174	69	32	1	184	252	186	253	2.17e-14	72.0
MS.gene072364.t1	MTR_3g498825	54.839	62	28	0	191	252	147	208	2.39e-14	71.6
MS.gene072364.t1	MTR_5g048860	53.226	62	29	0	191	252	365	426	6.61e-14	71.2
MS.gene072364.t1	MTR_8g012290	51.613	62	30	0	191	252	291	352	1.94e-13	69.7
MS.gene072364.t1	MTR_7g053410	51.613	62	30	0	191	252	317	378	1.96e-13	69.7
MS.gene072364.t1	MTR_8g012290	51.613	62	30	0	191	252	291	352	2.00e-13	69.7
MS.gene072364.t1	MTR_7g053410	51.613	62	30	0	191	252	317	378	2.07e-13	69.7
MS.gene072364.t1	MTR_3g116770	53.226	62	29	0	191	252	191	252	2.37e-13	69.3
MS.gene072364.t1	MTR_3g116770	53.226	62	29	0	191	252	191	252	2.38e-13	69.3
MS.gene072364.t1	MTR_8g065740	51.613	62	30	0	191	252	305	366	3.08e-13	69.3
MS.gene072364.t1	MTR_8g099880	50.000	62	31	0	191	252	145	206	2.29e-12	66.2
MS.gene072364.t1	MTR_4g070320	47.826	69	34	1	184	252	138	204	2.37e-12	66.2
MS.gene072364.t1	MTR_8g062240	48.387	62	32	0	191	252	151	212	4.93e-12	64.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072364.t1	AT2G42280	48.673	226	97	6	36	252	125	340	5.98e-43	149
MS.gene072364.t1	AT2G42280	48.673	226	97	6	36	252	125	340	1.22e-42	149
MS.gene072364.t1	AT2G43140	62.766	94	34	1	160	252	102	195	1.58e-33	121
MS.gene072364.t1	AT1G51140	58.333	108	38	3	145	252	265	365	2.08e-33	124
MS.gene072364.t1	AT2G43140	62.766	94	34	1	160	252	199	292	7.74e-33	122
MS.gene072364.t1	AT1G05805	62.366	93	33	2	161	252	253	344	1.10e-29	114
MS.gene072364.t1	AT1G35460	70.000	70	21	0	183	252	173	242	1.54e-28	109
MS.gene072364.t1	AT4G09180	67.105	76	23	1	177	252	172	245	3.66e-27	105
MS.gene072364.t1	AT1G35460	76.596	47	11	0	183	229	173	219	9.58e-19	82.4
MS.gene072364.t1	AT2G24260	52.778	72	33	1	181	252	25	95	2.33e-15	73.6
MS.gene072364.t1	AT2G42280	40.110	182	90	6	36	208	125	296	5.14e-15	73.6
MS.gene072364.t1	AT2G24260	52.778	72	33	1	181	252	128	198	5.64e-15	73.9
MS.gene072364.t1	AT5G58010	56.452	62	26	1	191	252	99	159	6.84e-15	73.2
MS.gene072364.t1	AT4G30980	56.452	62	26	1	191	252	130	190	2.47e-14	71.6
MS.gene072364.t1	AT4G30980	56.452	62	26	1	191	252	178	238	2.90e-14	72.0
MS.gene072364.t1	AT1G10120	54.839	62	28	0	191	252	206	267	4.50e-14	71.2
MS.gene072364.t1	AT1G10120	54.839	62	28	0	191	252	206	267	4.50e-14	71.2
MS.gene072364.t1	AT5G50915	54.839	62	28	0	191	252	136	197	5.44e-14	70.5
MS.gene072364.t1	AT5G50915	54.839	62	28	0	191	252	136	197	5.44e-14	70.5
MS.gene072364.t1	AT5G50915	54.839	62	28	0	191	252	136	197	5.79e-14	70.1
MS.gene072364.t1	AT5G50915	54.839	62	28	0	191	252	136	197	5.79e-14	70.1
MS.gene072364.t1	AT1G68920	51.613	62	30	0	191	252	303	364	1.04e-13	70.5
MS.gene072364.t1	AT1G68920	51.613	62	30	0	191	252	303	364	1.04e-13	70.5
MS.gene072364.t1	AT1G68920	51.613	62	30	0	191	252	303	364	1.04e-13	70.5
MS.gene072364.t1	AT1G68920	51.613	62	30	0	191	252	302	363	1.07e-13	70.5
MS.gene072364.t1	AT4G34530	51.613	62	30	0	191	252	172	233	1.26e-13	69.7
MS.gene072364.t1	AT1G26260	53.226	62	29	0	191	252	223	284	1.81e-13	69.7
MS.gene072364.t1	AT1G26260	53.226	62	29	0	191	252	223	284	1.81e-13	69.7
MS.gene072364.t1	AT1G26260	53.226	62	29	0	191	252	223	284	1.81e-13	69.7
MS.gene072364.t1	AT1G26260	53.226	62	29	0	191	252	223	284	1.81e-13	69.7
MS.gene072364.t1	AT1G26260	53.226	62	29	0	191	252	201	262	1.91e-13	69.7
MS.gene072364.t1	AT1G26260	53.226	62	29	0	191	252	172	233	2.01e-13	69.3
MS.gene072364.t1	AT3G07340	51.613	62	30	0	191	252	258	319	3.94e-13	68.9
MS.gene072364.t1	AT3G07340	51.613	62	30	0	191	252	258	319	4.57e-13	68.6
MS.gene072364.t1	AT1G25330	48.387	62	32	0	191	252	104	165	5.97e-13	66.6
MS.gene072364.t1	AT5G48560	50.000	62	31	0	191	252	301	362	1.30e-12	67.4
MS.gene072364.t1	AT5G48560	50.000	62	31	0	191	252	301	362	1.31e-12	67.4
MS.gene072364.t1	AT4G36540	44.444	72	38	1	181	252	133	202	3.30e-12	65.5
MS.gene072364.t1	AT4G36540	44.444	72	38	1	181	252	133	202	3.35e-12	65.5
MS.gene072364.t1	AT1G18400	48.387	62	32	0	191	252	145	206	7.15e-12	63.9
MS.gene072364.t1	AT3G23690	48.387	62	32	0	191	252	191	252	7.51e-12	64.7
MS.gene072364.t1	AT1G18400	48.387	62	32	0	191	252	145	206	1.17e-11	63.5
MS.gene072364.t1	AT1G59640	48.387	62	32	0	191	252	136	197	1.77e-11	63.2
MS.gene072364.t1	AT2G18300	46.774	62	33	0	191	252	185	246	2.83e-11	63.2
MS.gene072364.t1	AT2G18300	46.774	62	33	0	191	252	185	246	2.85e-11	63.2
MS.gene072364.t1	AT2G18300	46.774	62	33	0	191	252	185	246	3.95e-11	62.8
MS.gene072364.t1	AT1G59640	48.387	62	32	0	191	252	136	197	7.13e-11	62.0

Find 51 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGTCACCTTTATGATTAAA+AGG	0.243027	7.2:+16410990	None:intergenic
CTCAAGGAAGAAGGACTTCT+TGG	0.270896	7.2:+16409933	None:intergenic
CTTTATGATTAAAAGGATTA+TGG	0.272914	7.2:+16410997	None:intergenic
AACATATTGAACAATCAAAT+TGG	0.290694	7.2:-16409963	MS.gene072364:CDS
ACCCTTTCGGCAAGGCTTCT+AGG	0.305032	7.2:+16409536	None:intergenic
CCGAGTTCTTCTTACCCTTT+CGG	0.326997	7.2:+16409523	None:intergenic
ATGCTGCTCGGAACAGAATC+TGG	0.330247	7.2:+16409587	None:intergenic
AATGTTTATTGTGGAGAATT+TGG	0.338878	7.2:-16409618	MS.gene072364:CDS
AATGAGGATGCTCAATATTA+TGG	0.342968	7.2:-16409831	MS.gene072364:CDS
ATTCTGACCTTATCAATGTT+TGG	0.345820	7.2:+16409464	None:intergenic
AACAACAACATCATCTCCTT+TGG	0.393746	7.2:-16410840	MS.gene072364:CDS
TCCTAGAAGCCTTGCCGAAA+GGG	0.399735	7.2:-16409537	MS.gene072364:CDS
AACATCATCTCCTTTGGAAA+TGG	0.414195	7.2:-16410834	MS.gene072364:intron
CTCTTTGCTCTGATGCTGCT+CGG	0.438402	7.2:+16409575	None:intergenic
ACCACTCTGTCTTAAAAGAT+TGG	0.442108	7.2:+16410884	None:intergenic
AAAGGAGATGATGTTGTTGT+TGG	0.459546	7.2:+16410842	None:intergenic
TCGGAACAGAATCTGGAAAC+TGG	0.461159	7.2:+16409594	None:intergenic
CATTTATGATTCTAATGACC+AGG	0.461256	7.2:-16409799	MS.gene072364:intron
GGTTGTTCCAAACATTGATA+AGG	0.462084	7.2:-16409471	MS.gene072364:intron
AGACAGAGTGGTTCCCATGC+TGG	0.479729	7.2:-16410873	MS.gene072364:CDS
AAAGGTGTTGAAAACTATGA+TGG	0.487777	7.2:-16410023	MS.gene072364:CDS
CACATCAGAAATGTTAGACT+TGG	0.499859	7.2:-16409345	MS.gene072364:CDS
AAGACACATGAATTCTCAGC+AGG	0.502231	7.2:-16410940	MS.gene072364:CDS
TTCTCAGCAGGGTTATAGAA+TGG	0.503073	7.2:-16410928	MS.gene072364:CDS
ATCATCAGAAATGTTTATTG+TGG	0.507405	7.2:-16409627	MS.gene072364:CDS
TTGATGTTACTCAGAACGTA+GGG	0.512000	7.2:-16409700	MS.gene072364:intron
GATAACATTCTCAAGGAAGA+AGG	0.538937	7.2:+16409924	None:intergenic
ATCCTAGAAGCCTTGCCGAA+AGG	0.543719	7.2:-16409538	MS.gene072364:CDS
AACTCTAAAACGAGGAGTGA+TGG	0.547308	7.2:-16409897	MS.gene072364:CDS
TTCTTCTTACCCTTTCGGCA+AGG	0.550067	7.2:+16409528	None:intergenic
CCGAAAGGGTAAGAAGAACT+CGG	0.565752	7.2:-16409523	MS.gene072364:CDS
CTCCTTGTCTTCGATCATCA+CGG	0.577461	7.2:+16409859	None:intergenic
AAAACGAGGAGTGATGGCAT+TGG	0.578334	7.2:-16409891	MS.gene072364:CDS
GCAGGGTATGAATCTATGAA+AGG	0.606763	7.2:-16410041	MS.gene072364:intron
TTTGATGTTACTCAGAACGT+AGG	0.607876	7.2:-16409701	MS.gene072364:intron
AAGGTGTTGAAAACTATGAT+GGG	0.612325	7.2:-16410022	MS.gene072364:CDS
GTTATGTGATAACATTCTCA+AGG	0.612399	7.2:+16409917	None:intergenic
TACTACAATACCATTTCCAA+AGG	0.613692	7.2:+16410824	None:intergenic
AGCAGCATCAGAGCAAAGAG+AGG	0.624459	7.2:-16409572	MS.gene072364:CDS
ACGAATGAGAAAATTGCAAG+AGG	0.630200	7.2:-16409492	MS.gene072364:CDS
TATAGAATGGATCAACACAA+AGG	0.657311	7.2:-16410915	MS.gene072364:CDS
AGCCGTGATGATCGAAGACA+AGG	0.662100	7.2:-16409861	MS.gene072364:CDS
GTTGGAGAAATGACCAGCAT+GGG	0.675608	7.2:+16410860	None:intergenic
TGTTGGAGAAATGACCAGCA+TGG	0.677077	7.2:+16410859	None:intergenic
CGTGATGATCGAAGACAAGG+AGG	0.691311	7.2:-16409858	MS.gene072364:CDS
AGACACATGAATTCTCAGCA+GGG	0.696388	7.2:-16410939	MS.gene072364:CDS
GATGGGGTGAATGACAGTGA+TGG	0.701721	7.2:-16410005	MS.gene072364:CDS
TGATGTTACTCAGAACGTAG+GGG	0.704763	7.2:-16409699	MS.gene072364:intron
AAGACAAGGAGGTAGCAATG+AGG	0.720936	7.2:-16409847	MS.gene072364:CDS
AGGTGTTGAAAACTATGATG+GGG	0.756832	7.2:-16410021	MS.gene072364:CDS
TATCACATAACTCTAAAACG+AGG	0.781502	7.2:-16409905	MS.gene072364:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTAAAACATAACTTTTTTT+AGG	-	chr7.2:16409785-16409804	MS.gene072364:intron	10.0%
!!	AAAAAAGTTATTTATGTACA+AGG	-	chr7.2:16410026-16410045	MS.gene072364:CDS	15.0%
!!	AAAAACATAATTGTCTTAAA+AGG	+	chr7.2:16410900-16410919	None:intergenic	15.0%
!!	AAAAAGTTATTTATGTACAA+GGG	-	chr7.2:16410027-16410046	MS.gene072364:CDS	15.0%
!!	AAAACATAATTGTCTTAAAA+GGG	+	chr7.2:16410899-16410918	None:intergenic	15.0%
!!	GCTAAATCTAAAAAAAAAAT+GGG	-	chr7.2:16409819-16409838	MS.gene072364:CDS	15.0%
!!	TGCTAAATCTAAAAAAAAAA+TGG	-	chr7.2:16409818-16409837	MS.gene072364:CDS	15.0%
!!	TTATCATTAAGAATAGAATT+CGG	-	chr7.2:16409860-16409879	MS.gene072364:CDS	15.0%
!!!	AGTTAAACATTGTTTAATTT+TGG	-	chr7.2:16410930-16410949	MS.gene072364:CDS	15.0%
!!	AAACATAATTGTCTTAAAAG+GGG	+	chr7.2:16410898-16410917	None:intergenic	20.0%
!!	AACAATTTCTGTCTAATTTA+TGG	-	chr7.2:16410080-16410099	MS.gene072364:intron	20.0%
!!	AACATATTGAACAATCAAAT+TGG	-	chr7.2:16410346-16410365	MS.gene072364:intron	20.0%
!!	CTTTATGATTAAAAGGATTA+TGG	+	chr7.2:16409315-16409334	None:intergenic	20.0%
!!!	ATTCTATTTTAAGAAAGTGT+AGG	+	chr7.2:16409618-16409637	None:intergenic	20.0%
!!!	ATTTAGTGTTAAATGACTTT+TGG	-	chr7.2:16409760-16409779	MS.gene072364:intron	20.0%
!!!	CATAATCCTTTTAATCATAA+AGG	-	chr7.2:16409313-16409332	MS.gene072364:CDS	20.0%
!!!	TTCTATTTTAAGAAAGTGTA+GGG	+	chr7.2:16409617-16409636	None:intergenic	20.0%
!	AACATAATTGTCTTAAAAGG+GGG	+	chr7.2:16410897-16410916	None:intergenic	25.0%
!	AATGTTTATTGTGGAGAATT+TGG	-	chr7.2:16410691-16410710	MS.gene072364:intron	25.0%
!	ACTAAAATTGTATCTTGTGT+TGG	+	chr7.2:16409720-16409739	None:intergenic	25.0%
!	ATCATCAGAAATGTTTATTG+TGG	-	chr7.2:16410682-16410701	MS.gene072364:intron	25.0%
!	GCATATAAATGTAAATTGCA+GGG	-	chr7.2:16410251-16410270	MS.gene072364:intron	25.0%
!	TGCATATAAATGTAAATTGC+AGG	-	chr7.2:16410250-16410269	MS.gene072364:intron	25.0%
!	TGTATTTCATTGTAGTTACA+TGG	-	chr7.2:16409947-16409966	MS.gene072364:CDS	25.0%
!	TTGTCACCTTTATGATTAAA+AGG	+	chr7.2:16409322-16409341	None:intergenic	25.0%
!!	AACATTTCTGATGATTTTCT+TGG	+	chr7.2:16410677-16410696	None:intergenic	25.0%
!!	TTTCTTCTAGACAACTTTTT+AGG	-	chr7.2:16409563-16409582	MS.gene072364:CDS	25.0%
!!!	GCAATTTTTTGTGAATATAG+TGG	-	chr7.2:16409678-16409697	MS.gene072364:CDS	25.0%
	AAGTTAACCTGTTATATACC+TGG	+	chr7.2:16410531-16410550	None:intergenic	30.0%
	AAGTTATTTATGTACAAGGG+AGG	-	chr7.2:16410030-16410049	MS.gene072364:CDS	30.0%
	AATGAGGATGCTCAATATTA+TGG	-	chr7.2:16410478-16410497	MS.gene072364:intron	30.0%
	AATTGCGAATCAGCAAAATT+AGG	+	chr7.2:16410589-16410608	None:intergenic	30.0%
	ATTCTGACCTTATCAATGTT+TGG	+	chr7.2:16410848-16410867	None:intergenic	30.0%
	CATTTATGATTCTAATGACC+AGG	-	chr7.2:16410510-16410529	MS.gene072364:intron	30.0%
	CTAATGTGATTCATATTGCT+AGG	+	chr7.2:16410204-16410223	None:intergenic	30.0%
	GATTCAAATCATGAGATAGT+AGG	-	chr7.2:16410119-16410138	MS.gene072364:intron	30.0%
	GTTATGTGATAACATTCTCA+AGG	+	chr7.2:16410395-16410414	None:intergenic	30.0%
	TACTACAATACCATTTCCAA+AGG	+	chr7.2:16409488-16409507	None:intergenic	30.0%
	TAGGAGACAAAATTGCATTT+AGG	+	chr7.2:16410570-16410589	None:intergenic	30.0%
	TATAGAATGGATCAACACAA+AGG	-	chr7.2:16409394-16409413	MS.gene072364:intron	30.0%
!	CTAGTTCAATGTTTCTTTTG+GGG	-	chr7.2:16409586-16409605	MS.gene072364:CDS	30.0%
!	GCTAGTTCAATGTTTCTTTT+GGG	-	chr7.2:16409585-16409604	MS.gene072364:CDS	30.0%
!	TAGTTCAATGTTTCTTTTGG+GGG	-	chr7.2:16409587-16409606	MS.gene072364:CDS	30.0%
!!	AAAGGTGTTGAAAACTATGA+TGG	-	chr7.2:16410286-16410305	MS.gene072364:intron	30.0%
!!	AAGGTGTTGAAAACTATGAT+GGG	-	chr7.2:16410287-16410306	MS.gene072364:intron	30.0%
!!	TATCACATAACTCTAAAACG+AGG	-	chr7.2:16410404-16410423	MS.gene072364:intron	30.0%
	AAAGGAGATGATGTTGTTGT+TGG	+	chr7.2:16409470-16409489	None:intergenic	35.0%
	AAATGCTAAACAAGCATAGG+TGG	-	chr7.2:16410154-16410173	MS.gene072364:intron	35.0%
	AACAACAACATCATCTCCTT+TGG	-	chr7.2:16409469-16409488	MS.gene072364:intron	35.0%
	ACCACTCTGTCTTAAAAGAT+TGG	+	chr7.2:16409428-16409447	None:intergenic	35.0%
	ACGAATGAGAAAATTGCAAG+AGG	-	chr7.2:16410817-16410836	MS.gene072364:intron	35.0%
	CACAAATGCTAAACAAGCAT+AGG	-	chr7.2:16410151-16410170	MS.gene072364:intron	35.0%
	CACATCAGAAATGTTAGACT+TGG	-	chr7.2:16410964-16410983	MS.gene072364:CDS	35.0%
	CTAATGACCAGGTATATAAC+AGG	-	chr7.2:16410521-16410540	MS.gene072364:intron	35.0%
	CTAATTCTAACGCTATTCGT+TGG	+	chr7.2:16409921-16409940	None:intergenic	35.0%
	CTATGCTTGTTTAGCATTTG+TGG	+	chr7.2:16410153-16410172	None:intergenic	35.0%
	GATAACATTCTCAAGGAAGA+AGG	+	chr7.2:16410388-16410407	None:intergenic	35.0%
	GGTTGTTCCAAACATTGATA+AGG	-	chr7.2:16410838-16410857	MS.gene072364:CDS	35.0%
	TTGATGTTACTCAGAACGTA+GGG	-	chr7.2:16410609-16410628	MS.gene072364:intron	35.0%
	TTTGATGTTACTCAGAACGT+AGG	-	chr7.2:16410608-16410627	MS.gene072364:intron	35.0%
!	AACATCATCTCCTTTGGAAA+TGG	-	chr7.2:16409475-16409494	MS.gene072364:CDS	35.0%
!!	AGGTGTTGAAAACTATGATG+GGG	-	chr7.2:16410288-16410307	MS.gene072364:intron	35.0%
!!	GGCTAGTTCAATGTTTCTTT+TGG	-	chr7.2:16409584-16409603	MS.gene072364:CDS	35.0%
!!!	ACCAATCTTTTAAGACAGAG+TGG	-	chr7.2:16409424-16409443	MS.gene072364:intron	35.0%
	AAGACACATGAATTCTCAGC+AGG	-	chr7.2:16409369-16409388	MS.gene072364:intron	40.0%
	AGACACATGAATTCTCAGCA+GGG	-	chr7.2:16409370-16409389	MS.gene072364:intron	40.0%
	GCAGGGTATGAATCTATGAA+AGG	-	chr7.2:16410268-16410287	MS.gene072364:intron	40.0%
	GTGAATATAGTGGTCAGCTA+AGG	-	chr7.2:16409688-16409707	MS.gene072364:CDS	40.0%
	TATAGTGGTCAGCTAAGGTT+TGG	-	chr7.2:16409693-16409712	MS.gene072364:intron	40.0%
	TGATGTTACTCAGAACGTAG+GGG	-	chr7.2:16410610-16410629	MS.gene072364:intron	40.0%
	TTCTCAGCAGGGTTATAGAA+TGG	-	chr7.2:16409381-16409400	MS.gene072364:intron	40.0%
!!	AACTCTAAAACGAGGAGTGA+TGG	-	chr7.2:16410412-16410431	MS.gene072364:intron	40.0%
	AAAACGAGGAGTGATGGCAT+TGG	-	chr7.2:16410418-16410437	MS.gene072364:intron	45.0%
	AAGACAAGGAGGTAGCAATG+AGG	-	chr7.2:16410462-16410481	MS.gene072364:intron	45.0%
	CCGAAAGGGTAAGAAGAACT+CGG	-	chr7.2:16410786-16410805	MS.gene072364:intron	45.0%
	CCGAGTTCTTCTTACCCTTT+CGG	+	chr7.2:16410789-16410808	None:intergenic	45.0%
	CTCAAGGAAGAAGGACTTCT+TGG	+	chr7.2:16410379-16410398	None:intergenic	45.0%
	CTCCTTGTCTTCGATCATCA+CGG	+	chr7.2:16410453-16410472	None:intergenic	45.0%
	GTTGGAGAAATGACCAGCAT+GGG	+	chr7.2:16409452-16409471	None:intergenic	45.0%
	TCGGAACAGAATCTGGAAAC+TGG	+	chr7.2:16410718-16410737	None:intergenic	45.0%
	TGTTGGAGAAATGACCAGCA+TGG	+	chr7.2:16409453-16409472	None:intergenic	45.0%
	TTCTTCTTACCCTTTCGGCA+AGG	+	chr7.2:16410784-16410803	None:intergenic	45.0%
!!!	TTAACTTTTTTTTTTTTATT+AGG	-	chr7.2:16410544-16410563	MS.gene072364:intron	5.0%
	AGCAGCATCAGAGCAAAGAG+AGG	-	chr7.2:16410737-16410756	MS.gene072364:intron	50.0%
	AGCCGTGATGATCGAAGACA+AGG	-	chr7.2:16410448-16410467	MS.gene072364:intron	50.0%
	ATCCTAGAAGCCTTGCCGAA+AGG	-	chr7.2:16410771-16410790	MS.gene072364:intron	50.0%
	ATGCTGCTCGGAACAGAATC+TGG	+	chr7.2:16410725-16410744	None:intergenic	50.0%
	CGTGATGATCGAAGACAAGG+AGG	-	chr7.2:16410451-16410470	MS.gene072364:intron	50.0%
	CTCTTTGCTCTGATGCTGCT+CGG	+	chr7.2:16410737-16410756	None:intergenic	50.0%
	GATGGGGTGAATGACAGTGA+TGG	-	chr7.2:16410304-16410323	MS.gene072364:intron	50.0%
	TCCTAGAAGCCTTGCCGAAA+GGG	-	chr7.2:16410772-16410791	MS.gene072364:intron	50.0%
	ACCCTTTCGGCAAGGCTTCT+AGG	+	chr7.2:16410776-16410795	None:intergenic	55.0%
	AGACAGAGTGGTTCCCATGC+TGG	-	chr7.2:16409436-16409455	MS.gene072364:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	16409307	16411024	16409307	ID=MS.gene072364
chr7.2	mRNA	16409307	16411024	16409307	ID=MS.gene072364.t1;Parent=MS.gene072364
chr7.2	exon	16410835	16411024	16410835	ID=MS.gene072364.t1.exon1;Parent=MS.gene072364.t1
chr7.2	CDS	16410835	16411024	16410835	ID=cds.MS.gene072364.t1;Parent=MS.gene072364.t1
chr7.2	exon	16409800	16410059	16409800	ID=MS.gene072364.t1.exon2;Parent=MS.gene072364.t1
chr7.2	CDS	16409800	16410059	16409800	ID=cds.MS.gene072364.t1;Parent=MS.gene072364.t1
chr7.2	exon	16409472	16409708	16409472	ID=MS.gene072364.t1.exon3;Parent=MS.gene072364.t1
chr7.2	CDS	16409472	16409708	16409472	ID=cds.MS.gene072364.t1;Parent=MS.gene072364.t1
chr7.2	exon	16409307	16409375	16409307	ID=MS.gene072364.t1.exon4;Parent=MS.gene072364.t1
chr7.2	CDS	16409307	16409375	16409307	ID=cds.MS.gene072364.t1;Parent=MS.gene072364.t1

Gene Sequence

>MS.gene072364

ATGGACCATAATCCTTTTAATCATAAAGGTGACAACAACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAGGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGACAGAGTGGTTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGTATTGTAGTACTTTTTCTATTTCTGTTTTTTGTCTTGATTTTGACTTTTTTGTTCAATGATTTAATTTCTTCTAGACAACTTTTTAGGCTAGTTCAATGTTTCTTTTGGGGGCTGTCCCTACACTTTCTTAAAATAGAATTTGAAATTATAATTAATATTTTGTGCTCAAGAAATAGAGTGCAATTTTTTGTGAATATAGTGGTCAGCTAAGGTTTGGTCCAACACAAGATACAATTTTAGTCATCGTAGAGAGACATTTGCATTTAGTGTTAAATGACTTTTGGAAATTAAAACATAACTTTTTTTAGGACAGACATGTTGCTAAATCTAAAAAAAAAATGGGAGCTAAATCAATTTTTTTTTATCATTAAGAATAGAATTCGGAATTTTGAGTTTACAACACTCACACATACTATGCACCAACGAATAGCGTTAGAATTAGATAGATTGTATTTCATTGTAGTTACATGGATATTCAACATAAATATATAACGTATACATAAGTTATTTATGTGTGTAACAAAAAAAAAAAAGTTATTTATGTACAAGGGAGGCATTTATGTCTAATTATTATTTTTTTTAACAATTTCTGTCTAATTTATGGTTGTTTATAATTTGCTGATTCAAATCATGAGATAGTAGGACTTAATTCCACAAATGCTAAACAAGCATAGGTGGATTCATTCTCTGAAGATTTATTTACCTAGCAATATGAATCACATTAGATTTTCACATTTTTAAACATTATTTATGCATATAAATGTAAATTGCAGGGTATGAATCTATGAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATGGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAGTCCTTCTTCCTTGAGAATGTTATCACATAACTCTAAAACGAGGAGTGATGGCATTGGAACAACTAGCCGTGATGATCGAAGACAAGGAGGTAGCAATGAGGATGCTCAATATTATGGTCATAAATTCATTTATGATTCTAATGACCAGGTATATAACAGGTTAACTTTTTTTTTTTTATTAGGCCTAAATGCAATTTTGTCTCCTAATTTTGCTGATTCGCAATTTTGATGTTACTCAGAACGTAGGGGTACGAAATCAAGTTGATACACTATCACATCAGTTGAGTTTGCCAAGAAAATCATCAGAAATGTTTATTGTGGAGAATTTGGTCCAGTTTCCAGATTCTGTTCCGAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGGTTGTTCCAAACATTGATAAGGTCAGAATCATCATCACACAGTTGTTGATTTTTTCCCCCTTTTAAGACAATTATGTTTTTGTGTTTAGAAAGTTAAACATTGTTTAATTTTGGCAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTACATTAAAGATCTTCAAAAACAATTAAAG

Protein sequence

>MS.gene072364.t1

MDHNPFNHKGDNNNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSGSHAGHFSNNNIISFGNGYESMKGVENYDGVNDSDGELTLSMNILNNQIGFSPRSPSSLRMLSHNSKTRSDGIGTTSRDDRRQGGSNEDAQYYGHKFIYDSNDQNVGVRNQVDTLSHQLSLPRKSSEMFIVENLVQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEVVPNIDKQTCTSEMLDLAVEYIKDLQKQLK