Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072628.t1 | XP_003626098.1 | 98.8 | 242 | 3 | 0 | 1 | 242 | 13 | 254 | 1.80E-140 | 508.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072628.t1 | Q9ZSI1 | 81.8 | 231 | 42 | 0 | 12 | 242 | 25 | 255 | 8.4e-115 | 414.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072628.t1 | G7KVH3 | 98.8 | 242 | 3 | 0 | 1 | 242 | 13 | 254 | 1.3e-140 | 508.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050720 | MS.gene072628 | 0.922308 | 1.16E-88 | -1.69E-46 |
| MS.gene050722 | MS.gene072628 | 0.91813 | 2.28E-86 | -1.69E-46 |
| MS.gene050723 | MS.gene072628 | 0.89907 | 2.85E-77 | -1.69E-46 |
| MS.gene050725 | MS.gene072628 | 0.930837 | 9.15E-94 | -1.69E-46 |
| MS.gene050726 | MS.gene072628 | 0.891658 | 3.25E-74 | -1.69E-46 |
| MS.gene050822 | MS.gene072628 | 0.873911 | 1.02E-67 | -1.69E-46 |
| MS.gene050823 | MS.gene072628 | 0.898086 | 7.48E-77 | -1.69E-46 |
| MS.gene056680 | MS.gene072628 | 0.813989 | 1.94E-51 | -1.69E-46 |
| MS.gene059892 | MS.gene072628 | 0.805134 | 1.55E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072628.t1 | MTR_7g111010 | 98.760 | 242 | 3 | 0 | 1 | 242 | 13 | 254 | 1.29e-180 | 495 |
| MS.gene072628.t1 | MTR_7g110990 | 95.816 | 239 | 10 | 0 | 4 | 242 | 1 | 239 | 9.84e-172 | 472 |
| MS.gene072628.t1 | MTR_1g085460 | 85.833 | 240 | 34 | 0 | 3 | 242 | 18 | 257 | 1.97e-158 | 439 |
| MS.gene072628.t1 | MTR_1g026020 | 65.948 | 232 | 78 | 1 | 11 | 242 | 25 | 255 | 1.12e-116 | 334 |
| MS.gene072628.t1 | MTR_5g075320 | 64.126 | 223 | 76 | 3 | 15 | 237 | 29 | 247 | 1.88e-105 | 305 |
| MS.gene072628.t1 | MTR_3g094060 | 64.865 | 222 | 74 | 3 | 15 | 236 | 31 | 248 | 1.15e-104 | 303 |
| MS.gene072628.t1 | MTR_3g094040 | 64.865 | 222 | 74 | 3 | 15 | 236 | 31 | 248 | 1.18e-104 | 303 |
| MS.gene072628.t1 | MTR_7g061720 | 63.677 | 223 | 77 | 3 | 15 | 236 | 32 | 251 | 1.34e-104 | 303 |
| MS.gene072628.t1 | MTR_2g097030 | 64.574 | 223 | 75 | 3 | 15 | 236 | 34 | 253 | 2.43e-104 | 303 |
| MS.gene072628.t1 | MTR_5g041700 | 65.766 | 222 | 72 | 3 | 15 | 236 | 25 | 242 | 2.85e-104 | 302 |
| MS.gene072628.t1 | MTR_3g435430 | 64.474 | 228 | 76 | 4 | 15 | 242 | 25 | 247 | 6.00e-104 | 301 |
| MS.gene072628.t1 | MTR_4g081950 | 65.315 | 222 | 73 | 3 | 15 | 236 | 61 | 278 | 2.33e-103 | 301 |
| MS.gene072628.t1 | MTR_5g079950 | 64.286 | 224 | 76 | 3 | 14 | 236 | 32 | 252 | 3.39e-103 | 300 |
| MS.gene072628.t1 | MTR_7g011060 | 64.035 | 228 | 70 | 4 | 9 | 236 | 20 | 235 | 1.17e-100 | 293 |
| MS.gene072628.t1 | MTR_3g466790 | 61.181 | 237 | 88 | 3 | 1 | 237 | 18 | 250 | 8.73e-100 | 291 |
| MS.gene072628.t1 | MTR_3g466760 | 60.759 | 237 | 89 | 3 | 1 | 237 | 24 | 256 | 6.23e-98 | 286 |
| MS.gene072628.t1 | MTR_4g063975 | 62.332 | 223 | 80 | 3 | 15 | 236 | 32 | 251 | 4.27e-96 | 282 |
| MS.gene072628.t1 | MTR_6g012520 | 64.414 | 222 | 67 | 4 | 15 | 236 | 28 | 237 | 1.32e-91 | 270 |
| MS.gene072628.t1 | MTR_5g011210 | 55.217 | 230 | 97 | 4 | 15 | 242 | 37 | 262 | 1.04e-86 | 258 |
| MS.gene072628.t1 | MTR_4g102450 | 55.459 | 229 | 98 | 3 | 15 | 242 | 36 | 261 | 9.18e-86 | 256 |
| MS.gene072628.t1 | MTR_7g013120 | 51.965 | 229 | 105 | 3 | 15 | 242 | 29 | 253 | 8.98e-85 | 253 |
| MS.gene072628.t1 | MTR_4g124340 | 50.673 | 223 | 105 | 3 | 15 | 236 | 61 | 279 | 4.31e-84 | 252 |
| MS.gene072628.t1 | MTR_7g013140 | 51.852 | 243 | 111 | 4 | 1 | 242 | 14 | 251 | 6.40e-84 | 251 |
| MS.gene072628.t1 | MTR_7g013150 | 53.275 | 229 | 101 | 4 | 15 | 242 | 30 | 253 | 3.55e-83 | 249 |
| MS.gene072628.t1 | MTR_8g464350 | 51.965 | 229 | 104 | 4 | 15 | 242 | 31 | 254 | 2.69e-81 | 244 |
| MS.gene072628.t1 | MTR_8g058990 | 50.218 | 229 | 108 | 4 | 15 | 242 | 30 | 253 | 7.46e-78 | 235 |
| MS.gene072628.t1 | MTR_0040s0140 | 50.446 | 224 | 107 | 3 | 15 | 237 | 32 | 252 | 6.63e-76 | 230 |
| MS.gene072628.t1 | MTR_2g090255 | 49.107 | 224 | 110 | 3 | 15 | 237 | 28 | 248 | 2.63e-73 | 224 |
| MS.gene072628.t1 | MTR_5g076950 | 48.444 | 225 | 109 | 3 | 15 | 237 | 41 | 260 | 4.72e-72 | 221 |
| MS.gene072628.t1 | MTR_3g064510 | 46.725 | 229 | 115 | 5 | 15 | 237 | 53 | 280 | 3.75e-68 | 212 |
| MS.gene072628.t1 | MTR_6g012500 | 58.333 | 96 | 39 | 1 | 141 | 236 | 181 | 275 | 1.12e-32 | 120 |
| MS.gene072628.t1 | MTR_0008s0120 | 46.018 | 113 | 60 | 1 | 130 | 242 | 88 | 199 | 4.89e-31 | 114 |
| MS.gene072628.t1 | MTR_0008s0120 | 60.714 | 56 | 22 | 0 | 15 | 70 | 32 | 87 | 3.98e-17 | 77.4 |
| MS.gene072628.t1 | MTR_2g090270 | 30.962 | 239 | 139 | 8 | 15 | 242 | 35 | 258 | 2.33e-30 | 114 |
| MS.gene072628.t1 | MTR_2g090265 | 31.799 | 239 | 137 | 9 | 15 | 242 | 33 | 256 | 6.74e-29 | 110 |
| MS.gene072628.t1 | MTR_0122s0020 | 31.381 | 239 | 138 | 9 | 15 | 242 | 41 | 264 | 3.85e-26 | 102 |
| MS.gene072628.t1 | MTR_0118s0070 | 33.195 | 241 | 125 | 11 | 20 | 242 | 53 | 275 | 9.71e-26 | 102 |
| MS.gene072628.t1 | MTR_1g085365 | 80.000 | 55 | 11 | 0 | 186 | 240 | 4 | 58 | 7.30e-25 | 93.6 |
| MS.gene072628.t1 | MTR_4g028640 | 31.765 | 255 | 135 | 12 | 5 | 242 | 32 | 264 | 2.41e-24 | 98.2 |
| MS.gene072628.t1 | MTR_0809s0010 | 30.041 | 243 | 128 | 12 | 15 | 238 | 47 | 266 | 3.70e-21 | 89.7 |
| MS.gene072628.t1 | MTR_4g099370 | 27.600 | 250 | 156 | 10 | 3 | 242 | 16 | 250 | 7.25e-20 | 85.9 |
| MS.gene072628.t1 | MTR_5g013440 | 27.039 | 233 | 149 | 9 | 18 | 242 | 32 | 251 | 3.23e-19 | 84.0 |
| MS.gene072628.t1 | MTR_4g075790 | 31.224 | 237 | 136 | 11 | 16 | 242 | 24 | 243 | 1.11e-18 | 82.8 |
| MS.gene072628.t1 | MTR_4g098930 | 29.362 | 235 | 142 | 10 | 17 | 241 | 31 | 251 | 1.79e-15 | 73.9 |
| MS.gene072628.t1 | MTR_0122s0020 | 32.386 | 176 | 93 | 10 | 15 | 179 | 41 | 201 | 6.17e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072628.t1 | AT4G01630 | 79.167 | 240 | 50 | 0 | 3 | 242 | 16 | 255 | 2.97e-145 | 406 |
| MS.gene072628.t1 | AT1G20190 | 67.411 | 224 | 72 | 1 | 19 | 242 | 30 | 252 | 8.44e-111 | 319 |
| MS.gene072628.t1 | AT2G40610 | 65.022 | 223 | 75 | 2 | 15 | 237 | 30 | 249 | 8.56e-107 | 309 |
| MS.gene072628.t1 | AT5G05290 | 61.435 | 223 | 83 | 2 | 15 | 237 | 32 | 251 | 5.45e-106 | 306 |
| MS.gene072628.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 15 | 236 | 27 | 244 | 4.58e-103 | 300 |
| MS.gene072628.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 15 | 236 | 27 | 244 | 7.38e-103 | 298 |
| MS.gene072628.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 15 | 236 | 27 | 244 | 7.38e-103 | 298 |
| MS.gene072628.t1 | AT2G03090 | 62.500 | 224 | 80 | 3 | 13 | 236 | 28 | 247 | 4.50e-102 | 297 |
| MS.gene072628.t1 | AT3G55500 | 63.229 | 223 | 78 | 3 | 15 | 236 | 34 | 253 | 7.10e-102 | 296 |
| MS.gene072628.t1 | AT2G39700 | 62.946 | 224 | 79 | 3 | 14 | 236 | 30 | 250 | 3.65e-101 | 295 |
| MS.gene072628.t1 | AT5G02260 | 62.332 | 223 | 80 | 3 | 15 | 236 | 32 | 251 | 1.40e-100 | 293 |
| MS.gene072628.t1 | AT2G28950 | 62.780 | 223 | 79 | 3 | 15 | 236 | 31 | 250 | 2.85e-100 | 292 |
| MS.gene072628.t1 | AT2G37640 | 62.500 | 224 | 80 | 3 | 15 | 237 | 36 | 256 | 3.19e-100 | 292 |
| MS.gene072628.t1 | AT5G56320 | 58.898 | 236 | 93 | 3 | 1 | 236 | 15 | 246 | 5.85e-100 | 291 |
| MS.gene072628.t1 | AT5G56320 | 58.898 | 236 | 93 | 3 | 1 | 236 | 15 | 246 | 5.85e-100 | 291 |
| MS.gene072628.t1 | AT5G56320 | 58.898 | 236 | 93 | 3 | 1 | 236 | 15 | 246 | 3.29e-99 | 291 |
| MS.gene072628.t1 | AT3G29030 | 60.360 | 222 | 77 | 3 | 15 | 236 | 38 | 248 | 1.38e-97 | 285 |
| MS.gene072628.t1 | AT1G26770 | 63.964 | 222 | 76 | 3 | 15 | 236 | 26 | 243 | 6.70e-94 | 276 |
| MS.gene072628.t1 | AT1G26770 | 63.964 | 222 | 76 | 3 | 15 | 236 | 36 | 253 | 1.05e-93 | 276 |
| MS.gene072628.t1 | AT1G20190 | 64.767 | 193 | 67 | 1 | 50 | 242 | 2 | 193 | 7.29e-90 | 263 |
| MS.gene072628.t1 | AT3G15370 | 56.000 | 225 | 93 | 2 | 15 | 238 | 27 | 246 | 7.47e-89 | 263 |
| MS.gene072628.t1 | AT1G69530 | 63.547 | 203 | 68 | 4 | 15 | 217 | 27 | 223 | 9.58e-89 | 263 |
| MS.gene072628.t1 | AT1G69530 | 65.641 | 195 | 61 | 4 | 15 | 209 | 27 | 215 | 1.63e-88 | 261 |
| MS.gene072628.t1 | AT2G37640 | 59.709 | 206 | 79 | 3 | 32 | 236 | 28 | 230 | 7.96e-87 | 258 |
| MS.gene072628.t1 | AT1G12560 | 54.585 | 229 | 99 | 4 | 15 | 242 | 37 | 261 | 1.17e-85 | 255 |
| MS.gene072628.t1 | AT3G15370 | 49.412 | 255 | 93 | 3 | 15 | 238 | 27 | 276 | 3.04e-82 | 248 |
| MS.gene072628.t1 | AT5G39270 | 51.754 | 228 | 104 | 4 | 15 | 242 | 58 | 279 | 4.98e-80 | 242 |
| MS.gene072628.t1 | AT1G62980 | 49.388 | 245 | 117 | 6 | 1 | 242 | 16 | 256 | 3.85e-79 | 239 |
| MS.gene072628.t1 | AT5G39300 | 50.439 | 228 | 107 | 4 | 15 | 242 | 55 | 276 | 1.88e-78 | 238 |
| MS.gene072628.t1 | AT5G39310 | 49.787 | 235 | 111 | 5 | 9 | 242 | 84 | 312 | 2.16e-78 | 239 |
| MS.gene072628.t1 | AT5G39290 | 51.316 | 228 | 105 | 4 | 15 | 242 | 58 | 279 | 2.25e-78 | 238 |
| MS.gene072628.t1 | AT5G39280 | 50.000 | 228 | 108 | 4 | 15 | 242 | 54 | 275 | 6.16e-78 | 236 |
| MS.gene072628.t1 | AT3G03220 | 45.333 | 225 | 116 | 3 | 15 | 237 | 40 | 259 | 6.33e-69 | 213 |
| MS.gene072628.t1 | AT4G38210 | 48.673 | 226 | 110 | 4 | 15 | 237 | 28 | 250 | 7.67e-69 | 213 |
| MS.gene072628.t1 | AT5G39260 | 45.852 | 229 | 112 | 5 | 15 | 242 | 45 | 262 | 1.85e-61 | 194 |
| MS.gene072628.t1 | AT2G20750 | 33.333 | 246 | 140 | 8 | 9 | 242 | 34 | 267 | 3.80e-31 | 116 |
| MS.gene072628.t1 | AT4G28250 | 30.556 | 252 | 148 | 8 | 3 | 242 | 24 | 260 | 4.67e-31 | 115 |
| MS.gene072628.t1 | AT1G65680 | 34.711 | 242 | 129 | 11 | 15 | 242 | 47 | 273 | 1.08e-29 | 112 |
| MS.gene072628.t1 | AT4G28250 | 29.482 | 251 | 146 | 8 | 3 | 242 | 24 | 254 | 9.11e-28 | 107 |
| MS.gene072628.t1 | AT2G45110 | 34.568 | 243 | 122 | 11 | 18 | 242 | 36 | 259 | 1.67e-24 | 98.6 |
| MS.gene072628.t1 | AT1G65681 | 31.878 | 229 | 123 | 11 | 29 | 242 | 12 | 222 | 2.40e-21 | 89.4 |
| MS.gene072628.t1 | AT2G20750 | 33.516 | 182 | 98 | 7 | 9 | 179 | 34 | 203 | 2.80e-19 | 83.6 |
| MS.gene072628.t1 | AT4G28250 | 28.646 | 192 | 107 | 7 | 3 | 184 | 24 | 195 | 5.67e-17 | 77.0 |
| MS.gene072628.t1 | AT4G28250 | 28.877 | 187 | 103 | 7 | 3 | 179 | 24 | 190 | 3.26e-16 | 75.1 |
| MS.gene072628.t1 | AT3G60570 | 29.098 | 244 | 137 | 10 | 15 | 242 | 34 | 257 | 8.50e-16 | 75.1 |
| MS.gene072628.t1 | AT4G17030 | 25.714 | 245 | 163 | 8 | 3 | 240 | 15 | 247 | 1.13e-15 | 74.3 |
| MS.gene072628.t1 | AT4G38400 | 27.354 | 223 | 123 | 9 | 38 | 242 | 47 | 248 | 2.83e-15 | 73.6 |
| MS.gene072628.t1 | AT3G45970 | 28.696 | 230 | 122 | 11 | 33 | 242 | 14 | 221 | 1.42e-14 | 71.2 |
| MS.gene072628.t1 | AT3G45960 | 27.778 | 216 | 131 | 10 | 38 | 242 | 46 | 247 | 6.71e-13 | 67.0 |
| MS.gene072628.t1 | AT3G45970 | 28.000 | 225 | 120 | 11 | 38 | 242 | 46 | 248 | 5.79e-12 | 64.3 |
| MS.gene072628.t1 | AT3G60570 | 28.319 | 226 | 126 | 10 | 33 | 242 | 4 | 209 | 1.21e-11 | 62.8 |
Find 0 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATTAAAGTAACAC+CGG | + | 50581:2306-2325 | MS.gene072628:intron | 15.0% |
| !! | AACATAAGATTTACCATAAA+TGG | + | 50581:2534-2553 | MS.gene072628:CDS | 20.0% |
| !! | ACATAAGATTTACCATAAAT+GGG | + | 50581:2535-2554 | MS.gene072628:CDS | 20.0% |
| !! | TTAGAATTCAACTCAAAAAT+GGG | + | 50581:2721-2740 | MS.gene072628:CDS | 20.0% |
| !!! | ATTTCTAAAGTTTGGATAAA+AGG | + | 50581:2609-2628 | MS.gene072628:CDS | 20.0% |
| !!! | CTTAATTTTGATTAACTTGT+AGG | + | 50581:1841-1860 | MS.gene072628:intron | 20.0% |
| !!! | TTTAGAATTCAACTCAAAAA+TGG | + | 50581:2720-2739 | MS.gene072628:CDS | 20.0% |
| !!! | TTTCTAAAGTTTGGATAAAA+GGG | + | 50581:2610-2629 | MS.gene072628:CDS | 20.0% |
| ! | AAGGGTCAAAAAAGAATAAA+TGG | + | 50581:2628-2647 | MS.gene072628:CDS | 25.0% |
| ! | AGGGTCAAAAAAGAATAAAT+GGG | + | 50581:2629-2648 | MS.gene072628:CDS | 25.0% |
| ! | GTATTTATATATGCAGAGTT+GGG | + | 50581:2496-2515 | MS.gene072628:intron | 25.0% |
| ! | TGTATTTATATATGCAGAGT+TGG | + | 50581:2495-2514 | MS.gene072628:intron | 25.0% |
| !!! | AATTTTGATTAACTTGTAGG+TGG | + | 50581:1844-1863 | MS.gene072628:intron | 25.0% |
| AAAATAGTCTCTCCCATTTA+TGG | - | 50581:2550-2569 | None:intergenic | 30.0% | |
| AATCTATACACAGATGGATA+TGG | + | 50581:1883-1902 | MS.gene072628:CDS | 30.0% | |
| ACTAAAAATACTTGTTCGCT+AGG | - | 50581:2415-2434 | None:intergenic | 30.0% | |
| AGTTTGACAATGAAACATCA+AGG | - | 50581:2366-2385 | None:intergenic | 30.0% | |
| ATTAATTAAAGTAACACCGG+TGG | + | 50581:2309-2328 | MS.gene072628:intron | 30.0% | |
| GTTTGACAATGAAACATCAA+GGG | - | 50581:2365-2384 | None:intergenic | 30.0% | |
| TATGGAAATCTATACACAGA+TGG | + | 50581:1877-1896 | MS.gene072628:CDS | 30.0% | |
| !!! | TAGCGAACAAGTATTTTTAG+TGG | + | 50581:2414-2433 | MS.gene072628:intron | 30.0% |
| ACATACCTCCTGTACAAAAT+GGG | - | 50581:2171-2190 | None:intergenic | 35.0% | |
| ACATATCAAAGTGAGGTCTA+GGG | - | 50581:2101-2120 | None:intergenic | 35.0% | |
| AGTACTGCTCTCTTTAATGA+TGG | + | 50581:1925-1944 | MS.gene072628:CDS | 35.0% | |
| ATTTGTGGCAGTAATAGTGA+TGG | - | 50581:2025-2044 | None:intergenic | 35.0% | |
| CAAAGCCTAAGCTATCTTAA+TGG | + | 50581:2684-2703 | MS.gene072628:CDS | 35.0% | |
| GTACTGCTCTCTTTAATGAT+GGG | + | 50581:1926-1945 | MS.gene072628:CDS | 35.0% | |
| GTACTTAGCTATAGTCTGAA+AGG | - | 50581:2133-2152 | None:intergenic | 35.0% | |
| TCTGACCATTAAGATAGCTT+AGG | - | 50581:2692-2711 | None:intergenic | 35.0% | |
| TTAATGTTGCACCTTCCAAT+TGG | + | 50581:2760-2779 | MS.gene072628:CDS | 35.0% | |
| ! | GAATTGTTCCCATTTTGTAC+AGG | + | 50581:2160-2179 | MS.gene072628:CDS | 35.0% |
| ! | GTTTGGTGGACAAAAATTTG+TGG | - | 50581:2040-2059 | None:intergenic | 35.0% |
| ! | TTGGTGCTTATAAGCAATGT+AGG | + | 50581:2573-2592 | MS.gene072628:CDS | 35.0% |
| ! | TTTAATGATGGGAAGTCATG+TGG | + | 50581:1937-1956 | MS.gene072628:CDS | 35.0% |
| !! | GTGGAGAGATTTCTAAAGTT+TGG | + | 50581:2601-2620 | MS.gene072628:CDS | 35.0% |
| !!! | GAACGTTACTTTTGTAAGAC+TGG | - | 50581:2794-2813 | None:intergenic | 35.0% |
| ACCAACCACCATTGTCATTA+GGG | - | 50581:2071-2090 | None:intergenic | 40.0% | |
| ACTATAGCTAAGTACAGAGC+TGG | + | 50581:2138-2157 | MS.gene072628:CDS | 40.0% | |
| ATATCAAAGTGAGGTCTAGG+GGG | - | 50581:2099-2118 | None:intergenic | 40.0% | |
| CAAATTACCCATTGTTCCTG+AGG | - | 50581:1743-1762 | None:intergenic | 40.0% | |
| CAAGCTCATGCAACTTTCTA+TGG | + | 50581:1706-1725 | MS.gene072628:CDS | 40.0% | |
| CATATCAAAGTGAGGTCTAG+GGG | - | 50581:2100-2119 | None:intergenic | 40.0% | |
| CTTATAAGCAATGTAGGTGG+AGG | + | 50581:2579-2598 | MS.gene072628:CDS | 40.0% | |
| GAACCGATGTCAATGAATTG+GGG | + | 50581:2651-2670 | MS.gene072628:CDS | 40.0% | |
| GACAATGAAACATCAAGGGA+CGG | - | 50581:2361-2380 | None:intergenic | 40.0% | |
| GACATACCTCCTGTACAAAA+TGG | - | 50581:2172-2191 | None:intergenic | 40.0% | |
| GACATATCAAAGTGAGGTCT+AGG | - | 50581:2102-2121 | None:intergenic | 40.0% | |
| GATTTGATTGATATGCAGCG+TGG | - | 50581:2445-2464 | None:intergenic | 40.0% | |
| GGAACCGATGTCAATGAATT+GGG | + | 50581:2650-2669 | MS.gene072628:CDS | 40.0% | |
| GGTTGAGACATATCAAAGTG+AGG | - | 50581:2108-2127 | None:intergenic | 40.0% | |
| GTGCTTATAAGCAATGTAGG+TGG | + | 50581:2576-2595 | MS.gene072628:CDS | 40.0% | |
| GTGTCAAACTATCAGTTCAG+TGG | - | 50581:2393-2412 | None:intergenic | 40.0% | |
| TCAGAGTAGAATCTGCTGTT+TGG | + | 50581:1680-1699 | MS.gene072628:CDS | 40.0% | |
| TTAGCTATAGTCTGAAAGGC+AGG | - | 50581:2129-2148 | None:intergenic | 40.0% | |
| TTTGCACTCCCTAATGACAA+TGG | + | 50581:2060-2079 | MS.gene072628:CDS | 40.0% | |
| ! | ATCAGATAGTTTGTGACGCA+AGG | + | 50581:1968-1987 | MS.gene072628:CDS | 40.0% |
| ! | CAATGAATTGGGGTGCTAAT+TGG | + | 50581:2661-2680 | MS.gene072628:CDS | 40.0% |
| ! | TCATTAGGGAGTGCAAAGTT+TGG | - | 50581:2057-2076 | None:intergenic | 40.0% |
| ! | TTGTTCCCATTTTGTACAGG+AGG | + | 50581:2163-2182 | MS.gene072628:CDS | 40.0% |
| !! | TGGGAGAGACTATTTTGAGT+TGG | + | 50581:2554-2573 | MS.gene072628:CDS | 40.0% |
| AACTTGTAGGTGGTGCATGT+GGG | + | 50581:1854-1873 | MS.gene072628:intron | 45.0% | |
| AAGTGATGCCTCAGGAACAA+TGG | + | 50581:1732-1751 | MS.gene072628:CDS | 45.0% | |
| AGAGTTGGGTGCAAAAGAAG+TGG | + | 50581:2510-2529 | MS.gene072628:intron | 45.0% | |
| AGTGATGCCTCAGGAACAAT+GGG | + | 50581:1733-1752 | MS.gene072628:CDS | 45.0% | |
| ATAAGCAATGTAGGTGGAGG+TGG | + | 50581:2582-2601 | MS.gene072628:CDS | 45.0% | |
| CACCAACCACCATTGTCATT+AGG | - | 50581:2072-2091 | None:intergenic | 45.0% | |
| CCACGTTGTAAAATGACCAC+CGG | - | 50581:2328-2347 | None:intergenic | 45.0% | |
| GCACCCCAATTCATTGACAT+CGG | - | 50581:2657-2676 | None:intergenic | 45.0% | |
| GCACCTTCCAATTGGAGATT+TGG | + | 50581:2768-2787 | MS.gene072628:CDS | 45.0% | |
| GCTCATGCAACTTTCTATGG+TGG | + | 50581:1709-1728 | MS.gene072628:CDS | 45.0% | |
| GGGAACCGATGTCAATGAAT+TGG | + | 50581:2649-2668 | MS.gene072628:CDS | 45.0% | |
| TCCCTAATGACAATGGTGGT+TGG | + | 50581:2067-2086 | MS.gene072628:CDS | 45.0% | |
| TGGCCAAATCTCCAATTGGA+AGG | - | 50581:2774-2793 | None:intergenic | 45.0% | |
| ! | AATGATGGGAAGTCATGTGG+TGG | + | 50581:1940-1959 | MS.gene072628:CDS | 45.0% |
| ! | AGACTGGCCAAATCTCCAAT+TGG | - | 50581:2778-2797 | None:intergenic | 45.0% |
| ! | TAACTTGTAGGTGGTGCATG+TGG | + | 50581:1853-1872 | MS.gene072628:intron | 45.0% |
| ! | TTAGGGAGTGCAAAGTTTGG+TGG | - | 50581:2054-2073 | None:intergenic | 45.0% |
| !! | CGGTGGTCATTTTACAACGT+GGG | + | 50581:2326-2345 | MS.gene072628:intron | 45.0% |
| ACGCAAGGCAAGTTCCTCAA+TGG | + | 50581:1983-2002 | MS.gene072628:CDS | 50.0% | |
| GCACTCCCTAATGACAATGG+TGG | + | 50581:2063-2082 | MS.gene072628:CDS | 50.0% | |
| GTTCCTCAATGGTGTCTCAG+AGG | + | 50581:1994-2013 | MS.gene072628:CDS | 50.0% | |
| ! | TATGGTGGAAGTGATGCCTC+AGG | + | 50581:1724-1743 | MS.gene072628:CDS | 50.0% |
| !! | CCGGTGGTCATTTTACAACG+TGG | + | 50581:2325-2344 | MS.gene072628:intron | 50.0% |
| GTAGGTGGTGCATGTGGGTA+TGG | + | 50581:1859-1878 | MS.gene072628:intron | 55.0% | |
| !! | GTGCCTCTGAGACACCATTG+AGG | - | 50581:2000-2019 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50581 | gene | 1658 | 2821 | 1658 | ID=MS.gene072628 |
| 50581 | mRNA | 1658 | 2821 | 1658 | ID=MS.gene072628.t1;Parent=MS.gene072628 |
| 50581 | exon | 1658 | 1754 | 1658 | ID=MS.gene072628.t1.exon1;Parent=MS.gene072628.t1 |
| 50581 | CDS | 1658 | 1754 | 1658 | ID=cds.MS.gene072628.t1;Parent=MS.gene072628.t1 |
| 50581 | exon | 1863 | 2184 | 1863 | ID=MS.gene072628.t1.exon2;Parent=MS.gene072628.t1 |
| 50581 | CDS | 1863 | 2184 | 1863 | ID=cds.MS.gene072628.t1;Parent=MS.gene072628.t1 |
| 50581 | exon | 2512 | 2821 | 2512 | ID=MS.gene072628.t1.exon3;Parent=MS.gene072628.t1 |
| 50581 | CDS | 2512 | 2821 | 2512 | ID=cds.MS.gene072628.t1;Parent=MS.gene072628.t1 |
| Gene Sequence |
| Protein sequence |
