Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050722.t1 | XP_003626098.1 | 97.2 | 254 | 7 | 0 | 1 | 254 | 1 | 254 | 1.60E-144 | 521.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050722.t1 | Q9ZSI1 | 75.3 | 255 | 62 | 1 | 1 | 254 | 1 | 255 | 7.4e-114 | 411.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050722.t1 | G7KVH3 | 97.2 | 254 | 7 | 0 | 1 | 254 | 1 | 254 | 1.2e-144 | 521.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050720 | MS.gene050722 | 0.96923 | 8.10E-130 | -1.69E-46 |
| MS.gene050722 | MS.gene050723 | 0.878579 | 2.51E-69 | -1.69E-46 |
| MS.gene050722 | MS.gene050725 | 0.965838 | 3.97E-125 | -1.69E-46 |
| MS.gene050722 | MS.gene050726 | 0.854851 | 9.35E-62 | -1.69E-46 |
| MS.gene050722 | MS.gene050822 | 0.86943 | 3.11E-66 | -1.69E-46 |
| MS.gene050722 | MS.gene050823 | 0.871092 | 8.89E-67 | -1.69E-46 |
| MS.gene050722 | MS.gene056680 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene050722 | MS.gene058603 | 0.809376 | 1.95E-50 | -1.69E-46 |
| MS.gene050722 | MS.gene063912 | 0.813833 | 2.10E-51 | -1.69E-46 |
| MS.gene050722 | MS.gene066417 | 0.80028 | 1.55E-48 | -1.69E-46 |
| MS.gene050722 | MS.gene066602 | 0.823045 | 1.71E-53 | -1.69E-46 |
| MS.gene050722 | MS.gene072293 | 0.814616 | 1.41E-51 | -1.69E-46 |
| MS.gene050722 | MS.gene072622 | 0.922428 | 9.97E-89 | -1.69E-46 |
| MS.gene050722 | MS.gene072623 | 0.970384 | 1.55E-131 | -1.69E-46 |
| MS.gene050722 | MS.gene072625 | 0.921511 | 3.26E-88 | -1.69E-46 |
| MS.gene050722 | MS.gene072626 | 0.970279 | 2.24E-131 | -1.69E-46 |
| MS.gene050722 | MS.gene072628 | 0.91813 | 2.28E-86 | -1.69E-46 |
| MS.gene050722 | MS.gene072629 | 0.9699 | 8.30E-131 | -1.69E-46 |
| MS.gene050722 | MS.gene08883 | 0.808711 | 2.71E-50 | -1.69E-46 |
| MS.gene050722 | MS.gene28619 | 0.870685 | 1.21E-66 | -1.69E-46 |
| MS.gene050722 | MS.gene28620 | 0.882232 | 1.24E-70 | -1.69E-46 |
| MS.gene050722 | MS.gene47437 | 0.800732 | 1.26E-48 | -1.69E-46 |
| MS.gene050722 | MS.gene55078 | 0.802439 | 5.61E-49 | -1.69E-46 |
| MS.gene050722 | MS.gene60913 | 0.800923 | 1.15E-48 | -1.69E-46 |
| MS.gene050722 | MS.gene65948 | 0.811309 | 7.47E-51 | -1.69E-46 |
| MS.gene050722 | MS.gene69635 | 0.806463 | 8.13E-50 | -1.69E-46 |
| MS.gene050722 | MS.gene74565 | 0.802479 | 5.50E-49 | -1.69E-46 |
| MS.gene050722 | MS.gene78663 | 0.805921 | 1.06E-49 | -1.69E-46 |
| MS.gene050722 | MS.gene88365 | 0.807202 | 5.67E-50 | -1.69E-46 |
| MS.gene050722 | MS.gene91226 | 0.804208 | 2.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050722.t1 | MTR_7g111010 | 97.244 | 254 | 7 | 0 | 1 | 254 | 1 | 254 | 0.0 | 516 |
| MS.gene050722.t1 | MTR_7g110990 | 92.520 | 254 | 4 | 1 | 1 | 254 | 1 | 239 | 2.39e-174 | 479 |
| MS.gene050722.t1 | MTR_1g085460 | 85.833 | 240 | 34 | 0 | 15 | 254 | 18 | 257 | 2.30e-158 | 440 |
| MS.gene050722.t1 | MTR_1g026020 | 62.948 | 251 | 92 | 1 | 4 | 254 | 6 | 255 | 2.92e-119 | 341 |
| MS.gene050722.t1 | MTR_5g075320 | 59.919 | 247 | 90 | 4 | 8 | 249 | 5 | 247 | 2.56e-107 | 310 |
| MS.gene050722.t1 | MTR_2g097030 | 58.498 | 253 | 97 | 4 | 1 | 248 | 4 | 253 | 8.52e-107 | 309 |
| MS.gene050722.t1 | MTR_7g061720 | 58.268 | 254 | 97 | 5 | 1 | 248 | 1 | 251 | 9.62e-106 | 306 |
| MS.gene050722.t1 | MTR_5g079950 | 59.608 | 255 | 93 | 5 | 1 | 248 | 1 | 252 | 2.26e-105 | 306 |
| MS.gene050722.t1 | MTR_3g094040 | 60.408 | 245 | 92 | 4 | 5 | 248 | 8 | 248 | 1.01e-104 | 304 |
| MS.gene050722.t1 | MTR_3g094060 | 64.865 | 222 | 74 | 3 | 27 | 248 | 31 | 248 | 1.39e-104 | 303 |
| MS.gene050722.t1 | MTR_5g041700 | 64.912 | 228 | 75 | 4 | 27 | 254 | 25 | 247 | 3.66e-104 | 302 |
| MS.gene050722.t1 | MTR_3g435430 | 61.925 | 239 | 86 | 4 | 16 | 254 | 14 | 247 | 8.04e-104 | 301 |
| MS.gene050722.t1 | MTR_4g081950 | 65.315 | 222 | 73 | 3 | 27 | 248 | 61 | 278 | 2.09e-103 | 301 |
| MS.gene050722.t1 | MTR_3g466790 | 59.592 | 245 | 95 | 3 | 5 | 249 | 10 | 250 | 1.35e-101 | 296 |
| MS.gene050722.t1 | MTR_7g011060 | 61.157 | 242 | 80 | 5 | 9 | 248 | 6 | 235 | 7.02e-101 | 294 |
| MS.gene050722.t1 | MTR_3g466760 | 59.184 | 245 | 96 | 3 | 5 | 249 | 16 | 256 | 6.87e-100 | 292 |
| MS.gene050722.t1 | MTR_4g063975 | 56.522 | 253 | 102 | 4 | 1 | 248 | 2 | 251 | 1.53e-98 | 288 |
| MS.gene050722.t1 | MTR_6g012520 | 64.414 | 222 | 67 | 4 | 27 | 248 | 28 | 237 | 1.11e-91 | 270 |
| MS.gene050722.t1 | MTR_5g011210 | 50.584 | 257 | 117 | 5 | 4 | 254 | 10 | 262 | 2.10e-87 | 260 |
| MS.gene050722.t1 | MTR_4g102450 | 51.373 | 255 | 116 | 4 | 5 | 254 | 10 | 261 | 1.18e-86 | 258 |
| MS.gene050722.t1 | MTR_7g013120 | 48.988 | 247 | 118 | 4 | 9 | 254 | 14 | 253 | 1.96e-85 | 255 |
| MS.gene050722.t1 | MTR_7g013140 | 51.822 | 247 | 113 | 4 | 9 | 254 | 10 | 251 | 1.02e-84 | 253 |
| MS.gene050722.t1 | MTR_7g013150 | 50.000 | 252 | 117 | 5 | 4 | 254 | 10 | 253 | 1.90e-84 | 253 |
| MS.gene050722.t1 | MTR_4g124340 | 50.673 | 223 | 105 | 3 | 27 | 248 | 61 | 279 | 1.42e-83 | 251 |
| MS.gene050722.t1 | MTR_8g464350 | 48.617 | 253 | 117 | 5 | 10 | 254 | 7 | 254 | 1.99e-81 | 245 |
| MS.gene050722.t1 | MTR_8g058990 | 50.218 | 229 | 108 | 4 | 27 | 254 | 30 | 253 | 1.04e-77 | 235 |
| MS.gene050722.t1 | MTR_0040s0140 | 46.400 | 250 | 130 | 3 | 1 | 249 | 6 | 252 | 6.12e-76 | 231 |
| MS.gene050722.t1 | MTR_2g090255 | 45.600 | 250 | 130 | 4 | 1 | 249 | 4 | 248 | 9.09e-74 | 225 |
| MS.gene050722.t1 | MTR_5g076950 | 48.444 | 225 | 109 | 3 | 27 | 249 | 41 | 260 | 1.55e-71 | 220 |
| MS.gene050722.t1 | MTR_3g064510 | 46.725 | 229 | 115 | 5 | 27 | 249 | 53 | 280 | 1.10e-67 | 211 |
| MS.gene050722.t1 | MTR_6g012500 | 58.333 | 96 | 39 | 1 | 153 | 248 | 181 | 275 | 3.56e-32 | 119 |
| MS.gene050722.t1 | MTR_0008s0120 | 31.746 | 252 | 111 | 7 | 4 | 254 | 8 | 199 | 4.70e-31 | 114 |
| MS.gene050722.t1 | MTR_2g090270 | 30.962 | 239 | 139 | 8 | 27 | 254 | 35 | 258 | 4.56e-30 | 113 |
| MS.gene050722.t1 | MTR_2g090265 | 30.224 | 268 | 157 | 10 | 2 | 254 | 4 | 256 | 3.98e-29 | 110 |
| MS.gene050722.t1 | MTR_0122s0020 | 31.381 | 239 | 138 | 9 | 27 | 254 | 41 | 264 | 4.83e-26 | 102 |
| MS.gene050722.t1 | MTR_1g085365 | 81.818 | 55 | 10 | 0 | 198 | 252 | 4 | 58 | 7.93e-26 | 96.3 |
| MS.gene050722.t1 | MTR_0118s0070 | 32.780 | 241 | 126 | 10 | 32 | 254 | 53 | 275 | 1.26e-25 | 102 |
| MS.gene050722.t1 | MTR_4g028640 | 31.765 | 255 | 135 | 12 | 17 | 254 | 32 | 264 | 3.06e-24 | 98.2 |
| MS.gene050722.t1 | MTR_4g099370 | 28.137 | 263 | 153 | 12 | 5 | 254 | 11 | 250 | 4.89e-22 | 92.0 |
| MS.gene050722.t1 | MTR_0809s0010 | 30.041 | 243 | 128 | 12 | 27 | 250 | 47 | 266 | 2.05e-21 | 90.5 |
| MS.gene050722.t1 | MTR_5g013440 | 27.132 | 258 | 162 | 11 | 5 | 254 | 12 | 251 | 3.02e-20 | 87.0 |
| MS.gene050722.t1 | MTR_4g075790 | 31.224 | 237 | 136 | 11 | 28 | 254 | 24 | 243 | 2.79e-18 | 82.0 |
| MS.gene050722.t1 | MTR_4g098930 | 27.925 | 265 | 165 | 11 | 1 | 253 | 1 | 251 | 9.24e-17 | 77.8 |
| MS.gene050722.t1 | MTR_0122s0020 | 31.818 | 176 | 94 | 9 | 27 | 191 | 41 | 201 | 5.49e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050722.t1 | AT4G01630 | 75.294 | 255 | 62 | 1 | 1 | 254 | 1 | 255 | 7.52e-147 | 410 |
| MS.gene050722.t1 | AT1G20190 | 67.857 | 224 | 71 | 1 | 31 | 254 | 30 | 252 | 4.00e-112 | 323 |
| MS.gene050722.t1 | AT2G40610 | 60.331 | 242 | 93 | 2 | 8 | 249 | 11 | 249 | 2.99e-107 | 310 |
| MS.gene050722.t1 | AT5G05290 | 57.724 | 246 | 95 | 3 | 10 | 249 | 9 | 251 | 2.42e-106 | 308 |
| MS.gene050722.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 27 | 248 | 27 | 244 | 5.26e-103 | 300 |
| MS.gene050722.t1 | AT5G02260 | 56.972 | 251 | 100 | 4 | 3 | 248 | 4 | 251 | 6.04e-103 | 300 |
| MS.gene050722.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 27 | 248 | 27 | 244 | 6.67e-103 | 299 |
| MS.gene050722.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 27 | 248 | 27 | 244 | 6.67e-103 | 299 |
| MS.gene050722.t1 | AT3G55500 | 58.000 | 250 | 97 | 4 | 4 | 248 | 7 | 253 | 1.13e-102 | 299 |
| MS.gene050722.t1 | AT2G28950 | 58.103 | 253 | 96 | 5 | 1 | 248 | 3 | 250 | 3.21e-102 | 298 |
| MS.gene050722.t1 | AT2G03090 | 62.613 | 222 | 79 | 3 | 27 | 248 | 30 | 247 | 6.09e-102 | 297 |
| MS.gene050722.t1 | AT2G39700 | 62.946 | 224 | 79 | 3 | 26 | 248 | 30 | 250 | 1.55e-101 | 296 |
| MS.gene050722.t1 | AT5G56320 | 57.787 | 244 | 99 | 3 | 5 | 248 | 7 | 246 | 2.05e-101 | 296 |
| MS.gene050722.t1 | AT5G56320 | 57.787 | 244 | 99 | 3 | 5 | 248 | 7 | 246 | 2.05e-101 | 296 |
| MS.gene050722.t1 | AT5G56320 | 57.787 | 244 | 99 | 3 | 5 | 248 | 7 | 246 | 1.31e-100 | 295 |
| MS.gene050722.t1 | AT2G37640 | 62.500 | 224 | 80 | 3 | 27 | 249 | 36 | 256 | 2.12e-100 | 293 |
| MS.gene050722.t1 | AT3G29030 | 53.696 | 257 | 95 | 4 | 5 | 248 | 3 | 248 | 1.15e-97 | 286 |
| MS.gene050722.t1 | AT1G26770 | 58.921 | 241 | 95 | 3 | 8 | 248 | 7 | 243 | 1.06e-94 | 278 |
| MS.gene050722.t1 | AT1G26770 | 58.921 | 241 | 95 | 3 | 8 | 248 | 17 | 253 | 1.70e-94 | 278 |
| MS.gene050722.t1 | AT1G20190 | 65.285 | 193 | 66 | 1 | 62 | 254 | 2 | 193 | 2.59e-91 | 268 |
| MS.gene050722.t1 | AT3G15370 | 52.590 | 251 | 111 | 3 | 1 | 250 | 3 | 246 | 2.79e-91 | 270 |
| MS.gene050722.t1 | AT1G69530 | 63.547 | 203 | 68 | 4 | 27 | 229 | 27 | 223 | 6.04e-89 | 264 |
| MS.gene050722.t1 | AT1G69530 | 65.641 | 195 | 61 | 4 | 27 | 221 | 27 | 215 | 1.68e-88 | 261 |
| MS.gene050722.t1 | AT2G37640 | 59.420 | 207 | 80 | 3 | 44 | 249 | 28 | 231 | 6.80e-87 | 258 |
| MS.gene050722.t1 | AT1G12560 | 54.585 | 229 | 99 | 4 | 27 | 254 | 37 | 261 | 1.36e-85 | 256 |
| MS.gene050722.t1 | AT3G15370 | 46.975 | 281 | 111 | 4 | 1 | 250 | 3 | 276 | 1.23e-84 | 254 |
| MS.gene050722.t1 | AT5G39270 | 51.754 | 228 | 104 | 4 | 27 | 254 | 58 | 279 | 7.76e-81 | 244 |
| MS.gene050722.t1 | AT1G62980 | 47.266 | 256 | 129 | 5 | 1 | 254 | 5 | 256 | 4.80e-80 | 241 |
| MS.gene050722.t1 | AT5G39300 | 50.439 | 228 | 107 | 4 | 27 | 254 | 55 | 276 | 2.18e-79 | 240 |
| MS.gene050722.t1 | AT5G39290 | 51.316 | 228 | 105 | 4 | 27 | 254 | 58 | 279 | 3.11e-79 | 240 |
| MS.gene050722.t1 | AT5G39280 | 50.000 | 228 | 108 | 4 | 27 | 254 | 54 | 275 | 7.88e-79 | 239 |
| MS.gene050722.t1 | AT5G39310 | 49.787 | 235 | 111 | 5 | 21 | 254 | 84 | 312 | 9.91e-79 | 240 |
| MS.gene050722.t1 | AT4G38210 | 44.841 | 252 | 130 | 5 | 1 | 249 | 5 | 250 | 1.40e-70 | 217 |
| MS.gene050722.t1 | AT3G03220 | 45.333 | 225 | 116 | 3 | 27 | 249 | 40 | 259 | 1.72e-68 | 212 |
| MS.gene050722.t1 | AT5G39260 | 45.259 | 232 | 115 | 5 | 24 | 254 | 42 | 262 | 2.86e-62 | 196 |
| MS.gene050722.t1 | AT4G28250 | 31.227 | 269 | 155 | 9 | 1 | 254 | 7 | 260 | 1.88e-31 | 117 |
| MS.gene050722.t1 | AT2G20750 | 32.714 | 269 | 149 | 10 | 6 | 254 | 11 | 267 | 4.14e-31 | 116 |
| MS.gene050722.t1 | AT1G65680 | 34.711 | 242 | 129 | 11 | 27 | 254 | 47 | 273 | 1.48e-29 | 112 |
| MS.gene050722.t1 | AT4G28250 | 30.224 | 268 | 153 | 9 | 1 | 254 | 7 | 254 | 2.83e-28 | 108 |
| MS.gene050722.t1 | AT2G45110 | 34.156 | 243 | 123 | 11 | 30 | 254 | 36 | 259 | 1.80e-24 | 98.6 |
| MS.gene050722.t1 | AT1G65681 | 31.004 | 229 | 125 | 11 | 41 | 254 | 12 | 222 | 3.46e-21 | 89.0 |
| MS.gene050722.t1 | AT2G20750 | 32.683 | 205 | 107 | 9 | 6 | 191 | 11 | 203 | 1.68e-19 | 84.3 |
| MS.gene050722.t1 | AT4G28250 | 29.665 | 209 | 114 | 8 | 1 | 196 | 7 | 195 | 2.28e-17 | 78.6 |
| MS.gene050722.t1 | AT4G28250 | 29.902 | 204 | 110 | 8 | 1 | 191 | 7 | 190 | 1.19e-16 | 76.6 |
| MS.gene050722.t1 | AT4G17030 | 24.710 | 259 | 176 | 8 | 1 | 252 | 1 | 247 | 5.48e-16 | 75.5 |
| MS.gene050722.t1 | AT3G60570 | 29.098 | 244 | 137 | 10 | 27 | 254 | 34 | 257 | 1.05e-15 | 75.1 |
| MS.gene050722.t1 | AT4G38400 | 27.354 | 223 | 123 | 9 | 50 | 254 | 47 | 248 | 7.39e-15 | 72.8 |
| MS.gene050722.t1 | AT3G45970 | 28.696 | 230 | 122 | 11 | 45 | 254 | 14 | 221 | 2.56e-14 | 70.9 |
| MS.gene050722.t1 | AT3G45960 | 27.778 | 216 | 131 | 10 | 50 | 254 | 46 | 247 | 1.11e-12 | 66.6 |
| MS.gene050722.t1 | AT3G45970 | 28.000 | 225 | 120 | 11 | 50 | 254 | 46 | 248 | 9.43e-12 | 63.9 |
| MS.gene050722.t1 | AT3G60570 | 28.319 | 226 | 126 | 10 | 45 | 254 | 4 | 209 | 1.70e-11 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATTAAAGTAACAC+CGG | - | 50569:9170-9189 | MS.gene050722:CDS | 15.0% |
| !! | AACATAAGATTTACCATAAA+TGG | - | 50569:9398-9417 | MS.gene050722:CDS | 20.0% |
| !! | ACATAAGATTTACCATAAAT+GGG | - | 50569:9399-9418 | MS.gene050722:CDS | 20.0% |
| !! | TTAGAATTCAACTCAAAAAT+GGG | - | 50569:9585-9604 | MS.gene050722:CDS | 20.0% |
| !!! | ATTTCTAAAGTTTGGATAAA+AGG | - | 50569:9473-9492 | MS.gene050722:intron | 20.0% |
| !!! | CTTTATTTTGATTAACTTGT+AGG | - | 50569:8705-8724 | MS.gene050722:CDS | 20.0% |
| !!! | TTTAGAATTCAACTCAAAAA+TGG | - | 50569:9584-9603 | MS.gene050722:CDS | 20.0% |
| !!! | TTTCTAAAGTTTGGATAAAA+GGG | - | 50569:9474-9493 | MS.gene050722:intron | 20.0% |
| ! | AAGGGTCAAAAAAGAATAAA+TGG | - | 50569:9492-9511 | MS.gene050722:intron | 25.0% |
| ! | AGGGTCAAAAAAGAATAAAT+GGG | - | 50569:9493-9512 | MS.gene050722:intron | 25.0% |
| ! | GTATTTATATATGCAGAGTT+GGG | - | 50569:9360-9379 | MS.gene050722:CDS | 25.0% |
| ! | TGTATTTATATATGCAGAGT+TGG | - | 50569:9359-9378 | MS.gene050722:CDS | 25.0% |
| !!! | TATTTTGATTAACTTGTAGG+TGG | - | 50569:8708-8727 | MS.gene050722:CDS | 25.0% |
| AAAATAGTCTCTCCCATTTA+TGG | + | 50569:9414-9433 | None:intergenic | 30.0% | |
| ACTAAAAATACTTGTTCGCT+AGG | + | 50569:9279-9298 | None:intergenic | 30.0% | |
| AGTTTGACAATGAAACATCA+AGG | + | 50569:9230-9249 | None:intergenic | 30.0% | |
| ATTAATTAAAGTAACACCGG+TGG | - | 50569:9173-9192 | MS.gene050722:CDS | 30.0% | |
| GTTTGACAATGAAACATCAA+GGG | + | 50569:9229-9248 | None:intergenic | 30.0% | |
| !!! | TAGCGAACAAGTATTTTTAG+TGG | - | 50569:9278-9297 | MS.gene050722:CDS | 30.0% |
| AATCTGTACACAGATGGATA+TGG | - | 50569:8747-8766 | MS.gene050722:CDS | 35.0% | |
| ACATACCTCCTGTACAAAAT+GGG | + | 50569:9035-9054 | None:intergenic | 35.0% | |
| ACATATCAAAGTGAGGTCTA+GGG | + | 50569:8965-8984 | None:intergenic | 35.0% | |
| AGTACTGCTCTCTTTAATGA+TGG | - | 50569:8789-8808 | MS.gene050722:intron | 35.0% | |
| ATTTGTGGCAGTAATAGTGA+TGG | + | 50569:8889-8908 | None:intergenic | 35.0% | |
| CAAAGCCTAAGCTATCTTAA+TGG | - | 50569:9548-9567 | MS.gene050722:intron | 35.0% | |
| GTACTGCTCTCTTTAATGAT+GGG | - | 50569:8790-8809 | MS.gene050722:intron | 35.0% | |
| GTACTTAGCTATAGTCTGAA+AGG | + | 50569:8997-9016 | None:intergenic | 35.0% | |
| TATGGAAATCTGTACACAGA+TGG | - | 50569:8741-8760 | MS.gene050722:CDS | 35.0% | |
| TCAGAGTAGAATCTGTTGTT+TGG | - | 50569:8542-8561 | MS.gene050722:CDS | 35.0% | |
| TCTGACCATTAAGATAGCTT+AGG | + | 50569:9556-9575 | None:intergenic | 35.0% | |
| TTAATGTTGCACCTTCCAAT+TGG | - | 50569:9624-9643 | MS.gene050722:CDS | 35.0% | |
| ! | ATCAGATAGTTTGTGATGCA+AGG | - | 50569:8832-8851 | MS.gene050722:intron | 35.0% |
| ! | GAATTGTTCCCATTTTGTAC+AGG | - | 50569:9024-9043 | MS.gene050722:intron | 35.0% |
| ! | GTTTGGTGGACAAAAATTTG+TGG | + | 50569:8904-8923 | None:intergenic | 35.0% |
| ! | TTGGTGCTTATAAGCAATGT+AGG | - | 50569:9437-9456 | MS.gene050722:intron | 35.0% |
| ! | TTTAATGATGGGAAGTCATG+TGG | - | 50569:8801-8820 | MS.gene050722:intron | 35.0% |
| !! | GTGGAGAGATTTCTAAAGTT+TGG | - | 50569:9465-9484 | MS.gene050722:intron | 35.0% |
| ACCAACCACCATTGTCATTA+GGG | + | 50569:8935-8954 | None:intergenic | 40.0% | |
| ACTATAGCTAAGTACAGAGC+TGG | - | 50569:9002-9021 | MS.gene050722:intron | 40.0% | |
| ATATCAAAGTGAGGTCTAGG+GGG | + | 50569:8963-8982 | None:intergenic | 40.0% | |
| CAAGCTCATGCAACTTTCTA+TGG | - | 50569:8568-8587 | MS.gene050722:CDS | 40.0% | |
| CAATTTACCCATTGTTCCTG+AGG | + | 50569:8605-8624 | None:intergenic | 40.0% | |
| CATATCAAAGTGAGGTCTAG+GGG | + | 50569:8964-8983 | None:intergenic | 40.0% | |
| CTTATAAGCAATGTAGGTGG+AGG | - | 50569:9443-9462 | MS.gene050722:intron | 40.0% | |
| GAACCGATGTCAATGAATTG+GGG | - | 50569:9515-9534 | MS.gene050722:intron | 40.0% | |
| GACAATGAAACATCAAGGGA+CGG | + | 50569:9225-9244 | None:intergenic | 40.0% | |
| GACATACCTCCTGTACAAAA+TGG | + | 50569:9036-9055 | None:intergenic | 40.0% | |
| GACATATCAAAGTGAGGTCT+AGG | + | 50569:8966-8985 | None:intergenic | 40.0% | |
| GATTTGATTGATATGCAGCG+TGG | + | 50569:9309-9328 | None:intergenic | 40.0% | |
| GGAACCGATGTCAATGAATT+GGG | - | 50569:9514-9533 | MS.gene050722:intron | 40.0% | |
| GGTTGAGACATATCAAAGTG+AGG | + | 50569:8972-8991 | None:intergenic | 40.0% | |
| GTGCTTATAAGCAATGTAGG+TGG | - | 50569:9440-9459 | MS.gene050722:intron | 40.0% | |
| GTGTCAAACTATCAGTTCAG+TGG | + | 50569:9257-9276 | None:intergenic | 40.0% | |
| TTAGCTATAGTCTGAAAGGC+AGG | + | 50569:8993-9012 | None:intergenic | 40.0% | |
| TTTGCACTCCCTAATGACAA+TGG | - | 50569:8924-8943 | MS.gene050722:intron | 40.0% | |
| ! | CAATGAATTGGGGTGCTAAT+TGG | - | 50569:9525-9544 | MS.gene050722:intron | 40.0% |
| ! | TCATTAGGGAGTGCAAAGTT+TGG | + | 50569:8921-8940 | None:intergenic | 40.0% |
| ! | TTGTTCCCATTTTGTACAGG+AGG | - | 50569:9027-9046 | MS.gene050722:intron | 40.0% |
| !! | TGGGAGAGACTATTTTGAGT+TGG | - | 50569:9418-9437 | MS.gene050722:CDS | 40.0% |
| !!! | GGACGTTACTTTTGTAAGAC+TGG | + | 50569:9658-9677 | None:intergenic | 40.0% |
| AACTTGTAGGTGGTGCATGT+GGG | - | 50569:8718-8737 | MS.gene050722:CDS | 45.0% | |
| AAGTGATGCCTCAGGAACAA+TGG | - | 50569:8594-8613 | MS.gene050722:CDS | 45.0% | |
| AGAGTTGGGTGCAAAAGAAG+TGG | - | 50569:9374-9393 | MS.gene050722:CDS | 45.0% | |
| AGTGATGCCTCAGGAACAAT+GGG | - | 50569:8595-8614 | MS.gene050722:CDS | 45.0% | |
| ATAAGCAATGTAGGTGGAGG+TGG | - | 50569:9446-9465 | MS.gene050722:intron | 45.0% | |
| ATGCAAGGCAAGTTCCTCAA+TGG | - | 50569:8847-8866 | MS.gene050722:intron | 45.0% | |
| CACCAACCACCATTGTCATT+AGG | + | 50569:8936-8955 | None:intergenic | 45.0% | |
| CCACGTTGTAAAATGACCAC+CGG | + | 50569:9192-9211 | None:intergenic | 45.0% | |
| GCACCCCAATTCATTGACAT+CGG | + | 50569:9521-9540 | None:intergenic | 45.0% | |
| GCACCTTCCAATTGGAGATT+TGG | - | 50569:9632-9651 | MS.gene050722:CDS | 45.0% | |
| GCTCATGCAACTTTCTATGG+TGG | - | 50569:8571-8590 | MS.gene050722:CDS | 45.0% | |
| GGGAACCGATGTCAATGAAT+TGG | - | 50569:9513-9532 | MS.gene050722:intron | 45.0% | |
| TCCCTAATGACAATGGTGGT+TGG | - | 50569:8931-8950 | MS.gene050722:intron | 45.0% | |
| TGGCCAAATCTCCAATTGGA+AGG | + | 50569:9638-9657 | None:intergenic | 45.0% | |
| ! | AATGATGGGAAGTCATGTGG+TGG | - | 50569:8804-8823 | MS.gene050722:intron | 45.0% |
| ! | AGACTGGCCAAATCTCCAAT+TGG | + | 50569:9642-9661 | None:intergenic | 45.0% |
| ! | TAACTTGTAGGTGGTGCATG+TGG | - | 50569:8717-8736 | MS.gene050722:CDS | 45.0% |
| ! | TTAGGGAGTGCAAAGTTTGG+TGG | + | 50569:8918-8937 | None:intergenic | 45.0% |
| !! | CGGTGGTCATTTTACAACGT+GGG | - | 50569:9190-9209 | MS.gene050722:CDS | 45.0% |
| GCACTCCCTAATGACAATGG+TGG | - | 50569:8927-8946 | MS.gene050722:intron | 50.0% | |
| GTTCCTCAATGGTGTCTCAG+AGG | - | 50569:8858-8877 | MS.gene050722:intron | 50.0% | |
| ! | TATGGTGGAAGTGATGCCTC+AGG | - | 50569:8586-8605 | MS.gene050722:CDS | 50.0% |
| !! | CCGGTGGTCATTTTACAACG+TGG | - | 50569:9189-9208 | MS.gene050722:CDS | 50.0% |
| GTAGGTGGTGCATGTGGGTA+TGG | - | 50569:8723-8742 | MS.gene050722:CDS | 55.0% | |
| !! | GTGCCTCTGAGACACCATTG+AGG | + | 50569:8864-8883 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50569 | gene | 8484 | 9685 | 8484 | ID=MS.gene050722 |
| 50569 | mRNA | 8484 | 9685 | 8484 | ID=MS.gene050722.t1;Parent=MS.gene050722 |
| 50569 | exon | 9553 | 9685 | 9553 | ID=MS.gene050722.t1.exon1;Parent=MS.gene050722.t1 |
| 50569 | CDS | 9553 | 9685 | 9553 | ID=cds.MS.gene050722.t1;Parent=MS.gene050722.t1 |
| 50569 | exon | 9121 | 9442 | 9121 | ID=MS.gene050722.t1.exon2;Parent=MS.gene050722.t1 |
| 50569 | CDS | 9121 | 9442 | 9121 | ID=cds.MS.gene050722.t1;Parent=MS.gene050722.t1 |
| 50569 | exon | 8484 | 8793 | 8484 | ID=MS.gene050722.t1.exon3;Parent=MS.gene050722.t1 |
| 50569 | CDS | 8484 | 8793 | 8484 | ID=cds.MS.gene050722.t1;Parent=MS.gene050722.t1 |
| Gene Sequence |
| Protein sequence |
