AlfalfaGEDB | MS.gene050823

M. sativa cultivar XinJiangDaYe / MS.gene050823

KEGG: -
GO: GO:0005575 GO:0005576 GO:0008150 GO:0009664 GO:0009987 GO:0016043 GO:0045229 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0110165
PFAM: PF01357.24 PF03330.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050823.t1	XP_003626098.1	97.2	254	7	0	1	254	1	254	2.10E-144	521.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050823.t1	Q9ZSI1	75.3	255	62	1	1	254	1	255	9.7e-114	411.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050823.t1	G7KVH3	97.2	254	7	0	1	254	1	254	1.5e-144	521.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050720	MS.gene050823	0.85454	1.15E-61	-1.69E-46
MS.gene050722	MS.gene050823	0.871092	8.89E-67	-1.69E-46
MS.gene050723	MS.gene050823	0.888489	5.64E-73	-1.69E-46
MS.gene050725	MS.gene050823	0.886878	2.33E-72	-1.69E-46
MS.gene050726	MS.gene050823	0.88723	1.71E-72	-1.69E-46
MS.gene050822	MS.gene050823	0.899661	1.59E-77	-1.69E-46
MS.gene050823	MS.gene066602	0.815814	7.62E-52	-1.69E-46
MS.gene050823	MS.gene072622	0.902068	1.41E-78	-1.69E-46
MS.gene050823	MS.gene072623	0.872038	4.32E-67	-1.69E-46
MS.gene050823	MS.gene072625	0.918979	7.98E-87	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050823.t1	MTR_7g111010	97.244	254	7	0	1	254	1	254	0.0	516
MS.gene050823.t1	MTR_7g110990	92.520	254	4	1	1	254	1	239	3.63e-174	479
MS.gene050823.t1	MTR_1g085460	85.833	240	34	0	15	254	18	257	3.76e-158	439
MS.gene050823.t1	MTR_1g026020	62.550	251	93	1	4	254	6	255	7.08e-119	340
MS.gene050823.t1	MTR_5g075320	58.468	248	99	3	2	249	4	247	2.43e-106	308
MS.gene050823.t1	MTR_2g097030	57.708	253	99	4	1	248	4	253	2.73e-105	306
MS.gene050823.t1	MTR_3g094040	60.000	245	93	4	5	248	8	248	1.57e-104	303
MS.gene050823.t1	MTR_7g061720	57.480	254	99	4	1	248	1	251	2.03e-104	303
MS.gene050823.t1	MTR_3g094060	60.000	245	93	4	5	248	8	248	3.30e-104	303
MS.gene050823.t1	MTR_5g079950	58.824	255	95	5	1	248	1	252	4.23e-104	303

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050823.t1	AT4G01630	75.294	255	62	1	1	254	1	255	1.18e-146	410
MS.gene050823.t1	AT1G20190	67.411	224	72	1	31	254	30	252	1.85e-111	321
MS.gene050823.t1	AT2G40610	59.917	242	94	2	8	249	11	249	7.84e-107	309
MS.gene050823.t1	AT5G05290	56.911	246	97	3	10	249	9	251	3.06e-105	305
MS.gene050823.t1	AT1G69530	58.943	246	96	4	4	248	3	244	1.89e-102	298
MS.gene050823.t1	AT1G69530	58.943	246	96	4	4	248	3	244	1.89e-102	298
MS.gene050823.t1	AT1G69530	58.943	246	96	4	4	248	3	244	2.54e-102	299
MS.gene050823.t1	AT3G55500	59.274	248	95	5	4	248	9	253	6.00e-102	297
MS.gene050823.t1	AT5G02260	56.175	251	102	4	3	248	4	251	1.71e-101	296
MS.gene050823.t1	AT2G03090	56.967	244	101	3	5	248	8	247	1.96e-101	296

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Find 61 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAGTCTCTCCCATTTA+TGG	0.154353	7.4:-5137006	None:intergenic
AACATAAGATTTACCATAAA+TGG	0.113150	7.4:+5136993	MS.gene050823:CDS
AACTTGTAGGTGGTGCATGT+GGG	0.650230	7.4:+5136310	MS.gene050823:intron
AAGTGATGCCTCAGGAACAA+TGG	0.569867	7.4:+5136188	MS.gene050823:CDS
AATCTATACACAGATGGATA+TGG	0.375722	7.4:+5136339	MS.gene050823:CDS
AATGATGGGAAGTCATGTGG+TGG	0.690106	7.4:+5136396	MS.gene050823:CDS
ACATAAGATTTACCATAAAT+GGG	0.475947	7.4:+5136994	MS.gene050823:CDS
ACATACCTCCTGTACAAAAT+GGG	0.473578	7.4:-5136624	None:intergenic
ACATATCAAAGTGAGGTCTA+GGG	0.546299	7.4:-5136554	None:intergenic
ACCAACCACCATTGTCATTA+GGG	0.336869	7.4:-5136524	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGTCTCTCCCATTTA+TGG	-	chr7.4:5137009-5137028	None:intergenic	30.0%
AATCTATACACAGATGGATA+TGG	+	chr7.4:5136339-5136358	MS.gene050823:CDS	30.0%
AGTTTGACAATGAAACATCA+AGG	-	chr7.4:5136824-5136843	None:intergenic	30.0%
CTAAAAAATACTTGTTCGCT+AGG	-	chr7.4:5136873-5136892	None:intergenic	30.0%
GTTTGACAATGAAACATCAA+GGG	-	chr7.4:5136823-5136842	None:intergenic	30.0%
TATGGAAATCTATACACAGA+TGG	+	chr7.4:5136333-5136352	MS.gene050823:CDS	30.0%
ACATACCTCCTGTACAAAAT+GGG	-	chr7.4:5136627-5136646	None:intergenic	35.0%
ACATATCAAAGTGAGGTCTA+GGG	-	chr7.4:5136557-5136576	None:intergenic	35.0%
AGTACTGCTCTCTTTAATGA+TGG	+	chr7.4:5136381-5136400	MS.gene050823:CDS	35.0%
ATTTGTGGCAGTAATAGTGA+TGG	-	chr7.4:5136481-5136500	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	5136078	5137280	5136078	ID=MS.gene050823
chr7.4	mRNA	5136078	5137280	5136078	ID=MS.gene050823.t1;Parent=MS.gene050823
chr7.4	exon	5136078	5136210	5136078	ID=MS.gene050823.t1.exon1;Parent=MS.gene050823.t1
chr7.4	CDS	5136078	5136210	5136078	ID=cds.MS.gene050823.t1;Parent=MS.gene050823.t1
chr7.4	exon	5136319	5136640	5136319	ID=MS.gene050823.t1.exon2;Parent=MS.gene050823.t1
chr7.4	CDS	5136319	5136640	5136319	ID=cds.MS.gene050823.t1;Parent=MS.gene050823.t1
chr7.4	exon	5136971	5137280	5136971	ID=MS.gene050823.t1.exon3;Parent=MS.gene050823.t1
chr7.4	CDS	5136971	5137280	5136971	ID=cds.MS.gene050823.t1;Parent=MS.gene050823.t1

Gene Sequence

>MS.gene050823

ATGGAAAAAATAATTATTTGTGTTCTTATATTGCTGATAAATTTACTCACTAAAGAACTCAGAGTAGAATCTGCTGTTTGGCAGCAAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTAAATTGCTTCTTCTTTTGATTAACTTTATTCAAGTCTTAAGACAAATTAAAGTCTTAATCAAATTATGATAGTTAAGCATATAACTTAATTTTGATTAACTTGTAGGTGGTGCATGTGGGTATGGAAATCTATACACAGATGGATATGGTATAAAATCAGCAGCATTGAGTACTGCTCTCTTTAATGATGGGAAGTCATGTGGTGGTTGCTATCAGATAGTTTGTGACGCAAGGCAAGTTCCTCAATGGTGTCTCAGAGGCACTTCCATCACTATTACTGCCACAAATTTTTGTCCACCAAACTTTGCACTCCCTAATGACAATGGTGGTTGGTGTAATCCCCCTAGACCTCACTTTGATATGTCTCAACCTGCCTTTCAGACTATAGCTAAGTACAGAGCTGGAATTGTTCCCATTTTGTACAGGAGGTATGTCTTAATTTGCCGATCACACAATTAAATTGTTAATTAGAGTTTAATTTTGAAGCATGTTATTTTTTCAGTCAATTGATAAAAAAATCGTTGATTTTTAAATTAACGAAAAATAGAATAATTATTAATTAAAGTGACACTAGTGGTCATTTTACAATGTGGGATTTGAACTCCGTCCCTTGATGTTTCATTGTCAAACTTTTACCACTGAACTGATAGTTTGACACCTAGCGAACAAGTATTTTTTAGTGGATACACCACGCTGCATATCAATCAAATCTATAAATATGTGTTTTAAGCAATTTTTTGTTGTATTTATATATGCAGAGTTGGGTGCAAAAGAAGTGGAAACATAAGATTTACCATAAATGGGAGAGACTATTTTGAGTTGGTGCTTATAAGCAATGTAGGTGGAGGTGGAGAGATTTCTAAAGTTTGGATAAAAGGGTCAAAAAAGAATAAATGGGAACCGATGTCAATGAATTGGGGTGCTAATTGGCAAAGCCTAAGCTATCTTAATGGTCAGAGCTTATCTATTAGAATTCAACTCAAAAATGGGAAGACTCGTACAGCTATTAATGTTGCACCTTCCAATTGGAGATTTGGCCAGTCTTACAAAAGTAACGTCCAGTTCTGA

Protein sequence

>MS.gene050823.t1

MEKIIICVLILLINLLTKELRVESAVWQQAHATFYGGSDASGTMGGACGYGNLYTDGYGIKSAALSTALFNDGKSCGGCYQIVCDARQVPQWCLRGTSITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFQTIAKYRAGIVPILYRRVGCKRSGNIRFTINGRDYFELVLISNVGGGGEISKVWIKGSKKNKWEPMSMNWGANWQSLSYLNGQSLSIRIQLKNGKTRTAINVAPSNWRFGQSYKSNVQF