Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072629.t1 | XP_003626098.1 | 97.2 | 254 | 7 | 0 | 1 | 254 | 1 | 254 | 1.60E-144 | 521.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072629.t1 | Q9ZSI1 | 75.3 | 255 | 62 | 1 | 1 | 254 | 1 | 255 | 7.4e-114 | 411.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072629.t1 | G7KVH3 | 97.2 | 254 | 7 | 0 | 1 | 254 | 1 | 254 | 1.2e-144 | 521.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050720 | MS.gene072629 | 0.97294 | 1.36E-135 | -1.69E-46 |
| MS.gene050722 | MS.gene072629 | 0.9699 | 8.30E-131 | -1.69E-46 |
| MS.gene050723 | MS.gene072629 | 0.863651 | 2.14E-64 | -1.69E-46 |
| MS.gene050725 | MS.gene072629 | 0.977233 | 2.26E-143 | -1.69E-46 |
| MS.gene050726 | MS.gene072629 | 0.849897 | 2.41E-60 | -1.69E-46 |
| MS.gene050822 | MS.gene072629 | 0.853773 | 1.91E-61 | -1.69E-46 |
| MS.gene050823 | MS.gene072629 | 0.874104 | 8.76E-68 | -1.69E-46 |
| MS.gene056680 | MS.gene072629 | 0.807057 | 6.09E-50 | -1.69E-46 |
| MS.gene058603 | MS.gene072629 | 0.818318 | 2.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072629.t1 | MTR_7g111010 | 97.244 | 254 | 7 | 0 | 1 | 254 | 1 | 254 | 0.0 | 516 |
| MS.gene072629.t1 | MTR_7g110990 | 92.520 | 254 | 4 | 1 | 1 | 254 | 1 | 239 | 2.39e-174 | 479 |
| MS.gene072629.t1 | MTR_1g085460 | 85.833 | 240 | 34 | 0 | 15 | 254 | 18 | 257 | 2.30e-158 | 440 |
| MS.gene072629.t1 | MTR_1g026020 | 62.948 | 251 | 92 | 1 | 4 | 254 | 6 | 255 | 2.92e-119 | 341 |
| MS.gene072629.t1 | MTR_5g075320 | 59.919 | 247 | 90 | 4 | 8 | 249 | 5 | 247 | 2.56e-107 | 310 |
| MS.gene072629.t1 | MTR_2g097030 | 58.498 | 253 | 97 | 4 | 1 | 248 | 4 | 253 | 8.52e-107 | 309 |
| MS.gene072629.t1 | MTR_7g061720 | 58.268 | 254 | 97 | 5 | 1 | 248 | 1 | 251 | 9.62e-106 | 306 |
| MS.gene072629.t1 | MTR_5g079950 | 59.608 | 255 | 93 | 5 | 1 | 248 | 1 | 252 | 2.26e-105 | 306 |
| MS.gene072629.t1 | MTR_3g094040 | 60.408 | 245 | 92 | 4 | 5 | 248 | 8 | 248 | 1.01e-104 | 304 |
| MS.gene072629.t1 | MTR_3g094060 | 64.865 | 222 | 74 | 3 | 27 | 248 | 31 | 248 | 1.39e-104 | 303 |
| MS.gene072629.t1 | MTR_5g041700 | 64.912 | 228 | 75 | 4 | 27 | 254 | 25 | 247 | 3.66e-104 | 302 |
| MS.gene072629.t1 | MTR_3g435430 | 61.925 | 239 | 86 | 4 | 16 | 254 | 14 | 247 | 8.04e-104 | 301 |
| MS.gene072629.t1 | MTR_4g081950 | 65.315 | 222 | 73 | 3 | 27 | 248 | 61 | 278 | 2.09e-103 | 301 |
| MS.gene072629.t1 | MTR_3g466790 | 59.592 | 245 | 95 | 3 | 5 | 249 | 10 | 250 | 1.35e-101 | 296 |
| MS.gene072629.t1 | MTR_7g011060 | 61.157 | 242 | 80 | 5 | 9 | 248 | 6 | 235 | 7.02e-101 | 294 |
| MS.gene072629.t1 | MTR_3g466760 | 59.184 | 245 | 96 | 3 | 5 | 249 | 16 | 256 | 6.87e-100 | 292 |
| MS.gene072629.t1 | MTR_4g063975 | 56.522 | 253 | 102 | 4 | 1 | 248 | 2 | 251 | 1.53e-98 | 288 |
| MS.gene072629.t1 | MTR_6g012520 | 64.414 | 222 | 67 | 4 | 27 | 248 | 28 | 237 | 1.11e-91 | 270 |
| MS.gene072629.t1 | MTR_5g011210 | 50.584 | 257 | 117 | 5 | 4 | 254 | 10 | 262 | 2.10e-87 | 260 |
| MS.gene072629.t1 | MTR_4g102450 | 51.373 | 255 | 116 | 4 | 5 | 254 | 10 | 261 | 1.18e-86 | 258 |
| MS.gene072629.t1 | MTR_7g013120 | 48.988 | 247 | 118 | 4 | 9 | 254 | 14 | 253 | 1.96e-85 | 255 |
| MS.gene072629.t1 | MTR_7g013140 | 51.822 | 247 | 113 | 4 | 9 | 254 | 10 | 251 | 1.02e-84 | 253 |
| MS.gene072629.t1 | MTR_7g013150 | 50.000 | 252 | 117 | 5 | 4 | 254 | 10 | 253 | 1.90e-84 | 253 |
| MS.gene072629.t1 | MTR_4g124340 | 50.673 | 223 | 105 | 3 | 27 | 248 | 61 | 279 | 1.42e-83 | 251 |
| MS.gene072629.t1 | MTR_8g464350 | 48.617 | 253 | 117 | 5 | 10 | 254 | 7 | 254 | 1.99e-81 | 245 |
| MS.gene072629.t1 | MTR_8g058990 | 50.218 | 229 | 108 | 4 | 27 | 254 | 30 | 253 | 1.04e-77 | 235 |
| MS.gene072629.t1 | MTR_0040s0140 | 46.400 | 250 | 130 | 3 | 1 | 249 | 6 | 252 | 6.12e-76 | 231 |
| MS.gene072629.t1 | MTR_2g090255 | 45.600 | 250 | 130 | 4 | 1 | 249 | 4 | 248 | 9.09e-74 | 225 |
| MS.gene072629.t1 | MTR_5g076950 | 48.444 | 225 | 109 | 3 | 27 | 249 | 41 | 260 | 1.55e-71 | 220 |
| MS.gene072629.t1 | MTR_3g064510 | 46.725 | 229 | 115 | 5 | 27 | 249 | 53 | 280 | 1.10e-67 | 211 |
| MS.gene072629.t1 | MTR_6g012500 | 58.333 | 96 | 39 | 1 | 153 | 248 | 181 | 275 | 3.56e-32 | 119 |
| MS.gene072629.t1 | MTR_0008s0120 | 31.746 | 252 | 111 | 7 | 4 | 254 | 8 | 199 | 4.70e-31 | 114 |
| MS.gene072629.t1 | MTR_2g090270 | 30.962 | 239 | 139 | 8 | 27 | 254 | 35 | 258 | 4.56e-30 | 113 |
| MS.gene072629.t1 | MTR_2g090265 | 30.224 | 268 | 157 | 10 | 2 | 254 | 4 | 256 | 3.98e-29 | 110 |
| MS.gene072629.t1 | MTR_0122s0020 | 31.381 | 239 | 138 | 9 | 27 | 254 | 41 | 264 | 4.83e-26 | 102 |
| MS.gene072629.t1 | MTR_1g085365 | 81.818 | 55 | 10 | 0 | 198 | 252 | 4 | 58 | 7.93e-26 | 96.3 |
| MS.gene072629.t1 | MTR_0118s0070 | 32.780 | 241 | 126 | 10 | 32 | 254 | 53 | 275 | 1.26e-25 | 102 |
| MS.gene072629.t1 | MTR_4g028640 | 31.765 | 255 | 135 | 12 | 17 | 254 | 32 | 264 | 3.06e-24 | 98.2 |
| MS.gene072629.t1 | MTR_4g099370 | 28.137 | 263 | 153 | 12 | 5 | 254 | 11 | 250 | 4.89e-22 | 92.0 |
| MS.gene072629.t1 | MTR_0809s0010 | 30.041 | 243 | 128 | 12 | 27 | 250 | 47 | 266 | 2.05e-21 | 90.5 |
| MS.gene072629.t1 | MTR_5g013440 | 27.132 | 258 | 162 | 11 | 5 | 254 | 12 | 251 | 3.02e-20 | 87.0 |
| MS.gene072629.t1 | MTR_4g075790 | 31.224 | 237 | 136 | 11 | 28 | 254 | 24 | 243 | 2.79e-18 | 82.0 |
| MS.gene072629.t1 | MTR_4g098930 | 27.925 | 265 | 165 | 11 | 1 | 253 | 1 | 251 | 9.24e-17 | 77.8 |
| MS.gene072629.t1 | MTR_0122s0020 | 31.818 | 176 | 94 | 9 | 27 | 191 | 41 | 201 | 5.49e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072629.t1 | AT4G01630 | 75.294 | 255 | 62 | 1 | 1 | 254 | 1 | 255 | 7.52e-147 | 410 |
| MS.gene072629.t1 | AT1G20190 | 67.857 | 224 | 71 | 1 | 31 | 254 | 30 | 252 | 4.00e-112 | 323 |
| MS.gene072629.t1 | AT2G40610 | 60.331 | 242 | 93 | 2 | 8 | 249 | 11 | 249 | 2.99e-107 | 310 |
| MS.gene072629.t1 | AT5G05290 | 57.724 | 246 | 95 | 3 | 10 | 249 | 9 | 251 | 2.42e-106 | 308 |
| MS.gene072629.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 27 | 248 | 27 | 244 | 5.26e-103 | 300 |
| MS.gene072629.t1 | AT5G02260 | 56.972 | 251 | 100 | 4 | 3 | 248 | 4 | 251 | 6.04e-103 | 300 |
| MS.gene072629.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 27 | 248 | 27 | 244 | 6.67e-103 | 299 |
| MS.gene072629.t1 | AT1G69530 | 64.865 | 222 | 74 | 3 | 27 | 248 | 27 | 244 | 6.67e-103 | 299 |
| MS.gene072629.t1 | AT3G55500 | 58.000 | 250 | 97 | 4 | 4 | 248 | 7 | 253 | 1.13e-102 | 299 |
| MS.gene072629.t1 | AT2G28950 | 58.103 | 253 | 96 | 5 | 1 | 248 | 3 | 250 | 3.21e-102 | 298 |
| MS.gene072629.t1 | AT2G03090 | 62.613 | 222 | 79 | 3 | 27 | 248 | 30 | 247 | 6.09e-102 | 297 |
| MS.gene072629.t1 | AT2G39700 | 62.946 | 224 | 79 | 3 | 26 | 248 | 30 | 250 | 1.55e-101 | 296 |
| MS.gene072629.t1 | AT5G56320 | 57.787 | 244 | 99 | 3 | 5 | 248 | 7 | 246 | 2.05e-101 | 296 |
| MS.gene072629.t1 | AT5G56320 | 57.787 | 244 | 99 | 3 | 5 | 248 | 7 | 246 | 2.05e-101 | 296 |
| MS.gene072629.t1 | AT5G56320 | 57.787 | 244 | 99 | 3 | 5 | 248 | 7 | 246 | 1.31e-100 | 295 |
| MS.gene072629.t1 | AT2G37640 | 62.500 | 224 | 80 | 3 | 27 | 249 | 36 | 256 | 2.12e-100 | 293 |
| MS.gene072629.t1 | AT3G29030 | 53.696 | 257 | 95 | 4 | 5 | 248 | 3 | 248 | 1.15e-97 | 286 |
| MS.gene072629.t1 | AT1G26770 | 58.921 | 241 | 95 | 3 | 8 | 248 | 7 | 243 | 1.06e-94 | 278 |
| MS.gene072629.t1 | AT1G26770 | 58.921 | 241 | 95 | 3 | 8 | 248 | 17 | 253 | 1.70e-94 | 278 |
| MS.gene072629.t1 | AT1G20190 | 65.285 | 193 | 66 | 1 | 62 | 254 | 2 | 193 | 2.59e-91 | 268 |
| MS.gene072629.t1 | AT3G15370 | 52.590 | 251 | 111 | 3 | 1 | 250 | 3 | 246 | 2.79e-91 | 270 |
| MS.gene072629.t1 | AT1G69530 | 63.547 | 203 | 68 | 4 | 27 | 229 | 27 | 223 | 6.04e-89 | 264 |
| MS.gene072629.t1 | AT1G69530 | 65.641 | 195 | 61 | 4 | 27 | 221 | 27 | 215 | 1.68e-88 | 261 |
| MS.gene072629.t1 | AT2G37640 | 59.420 | 207 | 80 | 3 | 44 | 249 | 28 | 231 | 6.80e-87 | 258 |
| MS.gene072629.t1 | AT1G12560 | 54.585 | 229 | 99 | 4 | 27 | 254 | 37 | 261 | 1.36e-85 | 256 |
| MS.gene072629.t1 | AT3G15370 | 46.975 | 281 | 111 | 4 | 1 | 250 | 3 | 276 | 1.23e-84 | 254 |
| MS.gene072629.t1 | AT5G39270 | 51.754 | 228 | 104 | 4 | 27 | 254 | 58 | 279 | 7.76e-81 | 244 |
| MS.gene072629.t1 | AT1G62980 | 47.266 | 256 | 129 | 5 | 1 | 254 | 5 | 256 | 4.80e-80 | 241 |
| MS.gene072629.t1 | AT5G39300 | 50.439 | 228 | 107 | 4 | 27 | 254 | 55 | 276 | 2.18e-79 | 240 |
| MS.gene072629.t1 | AT5G39290 | 51.316 | 228 | 105 | 4 | 27 | 254 | 58 | 279 | 3.11e-79 | 240 |
| MS.gene072629.t1 | AT5G39280 | 50.000 | 228 | 108 | 4 | 27 | 254 | 54 | 275 | 7.88e-79 | 239 |
| MS.gene072629.t1 | AT5G39310 | 49.787 | 235 | 111 | 5 | 21 | 254 | 84 | 312 | 9.91e-79 | 240 |
| MS.gene072629.t1 | AT4G38210 | 44.841 | 252 | 130 | 5 | 1 | 249 | 5 | 250 | 1.40e-70 | 217 |
| MS.gene072629.t1 | AT3G03220 | 45.333 | 225 | 116 | 3 | 27 | 249 | 40 | 259 | 1.72e-68 | 212 |
| MS.gene072629.t1 | AT5G39260 | 45.259 | 232 | 115 | 5 | 24 | 254 | 42 | 262 | 2.86e-62 | 196 |
| MS.gene072629.t1 | AT4G28250 | 31.227 | 269 | 155 | 9 | 1 | 254 | 7 | 260 | 1.88e-31 | 117 |
| MS.gene072629.t1 | AT2G20750 | 32.714 | 269 | 149 | 10 | 6 | 254 | 11 | 267 | 4.14e-31 | 116 |
| MS.gene072629.t1 | AT1G65680 | 34.711 | 242 | 129 | 11 | 27 | 254 | 47 | 273 | 1.48e-29 | 112 |
| MS.gene072629.t1 | AT4G28250 | 30.224 | 268 | 153 | 9 | 1 | 254 | 7 | 254 | 2.83e-28 | 108 |
| MS.gene072629.t1 | AT2G45110 | 34.156 | 243 | 123 | 11 | 30 | 254 | 36 | 259 | 1.80e-24 | 98.6 |
| MS.gene072629.t1 | AT1G65681 | 31.004 | 229 | 125 | 11 | 41 | 254 | 12 | 222 | 3.46e-21 | 89.0 |
| MS.gene072629.t1 | AT2G20750 | 32.683 | 205 | 107 | 9 | 6 | 191 | 11 | 203 | 1.68e-19 | 84.3 |
| MS.gene072629.t1 | AT4G28250 | 29.665 | 209 | 114 | 8 | 1 | 196 | 7 | 195 | 2.28e-17 | 78.6 |
| MS.gene072629.t1 | AT4G28250 | 29.902 | 204 | 110 | 8 | 1 | 191 | 7 | 190 | 1.19e-16 | 76.6 |
| MS.gene072629.t1 | AT4G17030 | 24.710 | 259 | 176 | 8 | 1 | 252 | 1 | 247 | 5.48e-16 | 75.5 |
| MS.gene072629.t1 | AT3G60570 | 29.098 | 244 | 137 | 10 | 27 | 254 | 34 | 257 | 1.05e-15 | 75.1 |
| MS.gene072629.t1 | AT4G38400 | 27.354 | 223 | 123 | 9 | 50 | 254 | 47 | 248 | 7.39e-15 | 72.8 |
| MS.gene072629.t1 | AT3G45970 | 28.696 | 230 | 122 | 11 | 45 | 254 | 14 | 221 | 2.56e-14 | 70.9 |
| MS.gene072629.t1 | AT3G45960 | 27.778 | 216 | 131 | 10 | 50 | 254 | 46 | 247 | 1.11e-12 | 66.6 |
| MS.gene072629.t1 | AT3G45970 | 28.000 | 225 | 120 | 11 | 50 | 254 | 46 | 248 | 9.43e-12 | 63.9 |
| MS.gene072629.t1 | AT3G60570 | 28.319 | 226 | 126 | 10 | 45 | 254 | 4 | 209 | 1.70e-11 | 62.4 |
Find 0 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTAATTAAAGTAACAC+CGG | + | 50581:6574-6593 | MS.gene072629:intron | 15.0% |
| !! | AACATAAGATTTACCATAAA+TGG | + | 50581:6802-6821 | MS.gene072629:CDS | 20.0% |
| !! | ACATAAGATTTACCATAAAT+GGG | + | 50581:6803-6822 | MS.gene072629:CDS | 20.0% |
| !! | TTAGAATTCAACTCAAAAAT+GGG | + | 50581:6989-7008 | MS.gene072629:CDS | 20.0% |
| !!! | ATTTCTAAAGTTTGGATAAA+AGG | + | 50581:6877-6896 | MS.gene072629:CDS | 20.0% |
| !!! | CTTTATTTTGATTAACTTGT+AGG | + | 50581:6109-6128 | MS.gene072629:intron | 20.0% |
| !!! | TTTAGAATTCAACTCAAAAA+TGG | + | 50581:6988-7007 | MS.gene072629:CDS | 20.0% |
| !!! | TTTCTAAAGTTTGGATAAAA+GGG | + | 50581:6878-6897 | MS.gene072629:CDS | 20.0% |
| ! | AAGGGTCAAAAAAGAATAAA+TGG | + | 50581:6896-6915 | MS.gene072629:CDS | 25.0% |
| ! | AGGGTCAAAAAAGAATAAAT+GGG | + | 50581:6897-6916 | MS.gene072629:CDS | 25.0% |
| ! | GTATTTATATATGCAGAGTT+GGG | + | 50581:6764-6783 | MS.gene072629:intron | 25.0% |
| ! | TGTATTTATATATGCAGAGT+TGG | + | 50581:6763-6782 | MS.gene072629:intron | 25.0% |
| !!! | TATTTTGATTAACTTGTAGG+TGG | + | 50581:6112-6131 | MS.gene072629:intron | 25.0% |
| AAAATAGTCTCTCCCATTTA+TGG | - | 50581:6818-6837 | None:intergenic | 30.0% | |
| ACTAAAAATACTTGTTCGCT+AGG | - | 50581:6683-6702 | None:intergenic | 30.0% | |
| AGTTTGACAATGAAACATCA+AGG | - | 50581:6634-6653 | None:intergenic | 30.0% | |
| ATTAATTAAAGTAACACCGG+TGG | + | 50581:6577-6596 | MS.gene072629:intron | 30.0% | |
| GTTTGACAATGAAACATCAA+GGG | - | 50581:6633-6652 | None:intergenic | 30.0% | |
| !!! | TAGCGAACAAGTATTTTTAG+TGG | + | 50581:6682-6701 | MS.gene072629:intron | 30.0% |
| AATCTGTACACAGATGGATA+TGG | + | 50581:6151-6170 | MS.gene072629:CDS | 35.0% | |
| ACATACCTCCTGTACAAAAT+GGG | - | 50581:6439-6458 | None:intergenic | 35.0% | |
| ACATATCAAAGTGAGGTCTA+GGG | - | 50581:6369-6388 | None:intergenic | 35.0% | |
| AGTACTGCTCTCTTTAATGA+TGG | + | 50581:6193-6212 | MS.gene072629:CDS | 35.0% | |
| ATTTGTGGCAGTAATAGTGA+TGG | - | 50581:6293-6312 | None:intergenic | 35.0% | |
| CAAAGCCTAAGCTATCTTAA+TGG | + | 50581:6952-6971 | MS.gene072629:CDS | 35.0% | |
| GTACTGCTCTCTTTAATGAT+GGG | + | 50581:6194-6213 | MS.gene072629:CDS | 35.0% | |
| GTACTTAGCTATAGTCTGAA+AGG | - | 50581:6401-6420 | None:intergenic | 35.0% | |
| TATGGAAATCTGTACACAGA+TGG | + | 50581:6145-6164 | MS.gene072629:CDS | 35.0% | |
| TCAGAGTAGAATCTGTTGTT+TGG | + | 50581:5946-5965 | MS.gene072629:CDS | 35.0% | |
| TCTGACCATTAAGATAGCTT+AGG | - | 50581:6960-6979 | None:intergenic | 35.0% | |
| TTAATGTTGCACCTTCCAAT+TGG | + | 50581:7028-7047 | MS.gene072629:CDS | 35.0% | |
| ! | ATCAGATAGTTTGTGATGCA+AGG | + | 50581:6236-6255 | MS.gene072629:CDS | 35.0% |
| ! | GAATTGTTCCCATTTTGTAC+AGG | + | 50581:6428-6447 | MS.gene072629:CDS | 35.0% |
| ! | GTTTGGTGGACAAAAATTTG+TGG | - | 50581:6308-6327 | None:intergenic | 35.0% |
| ! | TTGGTGCTTATAAGCAATGT+AGG | + | 50581:6841-6860 | MS.gene072629:CDS | 35.0% |
| ! | TTTAATGATGGGAAGTCATG+TGG | + | 50581:6205-6224 | MS.gene072629:CDS | 35.0% |
| !! | GTGGAGAGATTTCTAAAGTT+TGG | + | 50581:6869-6888 | MS.gene072629:CDS | 35.0% |
| ACCAACCACCATTGTCATTA+GGG | - | 50581:6339-6358 | None:intergenic | 40.0% | |
| ACTATAGCTAAGTACAGAGC+TGG | + | 50581:6406-6425 | MS.gene072629:CDS | 40.0% | |
| ATATCAAAGTGAGGTCTAGG+GGG | - | 50581:6367-6386 | None:intergenic | 40.0% | |
| CAAGCTCATGCAACTTTCTA+TGG | + | 50581:5972-5991 | MS.gene072629:CDS | 40.0% | |
| CAATTTACCCATTGTTCCTG+AGG | - | 50581:6009-6028 | None:intergenic | 40.0% | |
| CATATCAAAGTGAGGTCTAG+GGG | - | 50581:6368-6387 | None:intergenic | 40.0% | |
| CTTATAAGCAATGTAGGTGG+AGG | + | 50581:6847-6866 | MS.gene072629:CDS | 40.0% | |
| GAACCGATGTCAATGAATTG+GGG | + | 50581:6919-6938 | MS.gene072629:CDS | 40.0% | |
| GACAATGAAACATCAAGGGA+CGG | - | 50581:6629-6648 | None:intergenic | 40.0% | |
| GACATACCTCCTGTACAAAA+TGG | - | 50581:6440-6459 | None:intergenic | 40.0% | |
| GACATATCAAAGTGAGGTCT+AGG | - | 50581:6370-6389 | None:intergenic | 40.0% | |
| GATTTGATTGATATGCAGCG+TGG | - | 50581:6713-6732 | None:intergenic | 40.0% | |
| GGAACCGATGTCAATGAATT+GGG | + | 50581:6918-6937 | MS.gene072629:CDS | 40.0% | |
| GGTTGAGACATATCAAAGTG+AGG | - | 50581:6376-6395 | None:intergenic | 40.0% | |
| GTGCTTATAAGCAATGTAGG+TGG | + | 50581:6844-6863 | MS.gene072629:CDS | 40.0% | |
| GTGTCAAACTATCAGTTCAG+TGG | - | 50581:6661-6680 | None:intergenic | 40.0% | |
| TTAGCTATAGTCTGAAAGGC+AGG | - | 50581:6397-6416 | None:intergenic | 40.0% | |
| TTTGCACTCCCTAATGACAA+TGG | + | 50581:6328-6347 | MS.gene072629:CDS | 40.0% | |
| ! | CAATGAATTGGGGTGCTAAT+TGG | + | 50581:6929-6948 | MS.gene072629:CDS | 40.0% |
| ! | TCATTAGGGAGTGCAAAGTT+TGG | - | 50581:6325-6344 | None:intergenic | 40.0% |
| ! | TTGTTCCCATTTTGTACAGG+AGG | + | 50581:6431-6450 | MS.gene072629:CDS | 40.0% |
| !! | TGGGAGAGACTATTTTGAGT+TGG | + | 50581:6822-6841 | MS.gene072629:CDS | 40.0% |
| !!! | GGACGTTACTTTTGTAAGAC+TGG | - | 50581:7062-7081 | None:intergenic | 40.0% |
| AACTTGTAGGTGGTGCATGT+GGG | + | 50581:6122-6141 | MS.gene072629:intron | 45.0% | |
| AAGTGATGCCTCAGGAACAA+TGG | + | 50581:5998-6017 | MS.gene072629:CDS | 45.0% | |
| AGAGTTGGGTGCAAAAGAAG+TGG | + | 50581:6778-6797 | MS.gene072629:intron | 45.0% | |
| AGTGATGCCTCAGGAACAAT+GGG | + | 50581:5999-6018 | MS.gene072629:CDS | 45.0% | |
| ATAAGCAATGTAGGTGGAGG+TGG | + | 50581:6850-6869 | MS.gene072629:CDS | 45.0% | |
| ATGCAAGGCAAGTTCCTCAA+TGG | + | 50581:6251-6270 | MS.gene072629:CDS | 45.0% | |
| CACCAACCACCATTGTCATT+AGG | - | 50581:6340-6359 | None:intergenic | 45.0% | |
| CCACGTTGTAAAATGACCAC+CGG | - | 50581:6596-6615 | None:intergenic | 45.0% | |
| GCACCCCAATTCATTGACAT+CGG | - | 50581:6925-6944 | None:intergenic | 45.0% | |
| GCACCTTCCAATTGGAGATT+TGG | + | 50581:7036-7055 | MS.gene072629:CDS | 45.0% | |
| GCTCATGCAACTTTCTATGG+TGG | + | 50581:5975-5994 | MS.gene072629:CDS | 45.0% | |
| GGGAACCGATGTCAATGAAT+TGG | + | 50581:6917-6936 | MS.gene072629:CDS | 45.0% | |
| TCCCTAATGACAATGGTGGT+TGG | + | 50581:6335-6354 | MS.gene072629:CDS | 45.0% | |
| TGGCCAAATCTCCAATTGGA+AGG | - | 50581:7042-7061 | None:intergenic | 45.0% | |
| ! | AATGATGGGAAGTCATGTGG+TGG | + | 50581:6208-6227 | MS.gene072629:CDS | 45.0% |
| ! | AGACTGGCCAAATCTCCAAT+TGG | - | 50581:7046-7065 | None:intergenic | 45.0% |
| ! | TAACTTGTAGGTGGTGCATG+TGG | + | 50581:6121-6140 | MS.gene072629:intron | 45.0% |
| ! | TTAGGGAGTGCAAAGTTTGG+TGG | - | 50581:6322-6341 | None:intergenic | 45.0% |
| !! | CGGTGGTCATTTTACAACGT+GGG | + | 50581:6594-6613 | MS.gene072629:intron | 45.0% |
| GCACTCCCTAATGACAATGG+TGG | + | 50581:6331-6350 | MS.gene072629:CDS | 50.0% | |
| GTTCCTCAATGGTGTCTCAG+AGG | + | 50581:6262-6281 | MS.gene072629:CDS | 50.0% | |
| ! | TATGGTGGAAGTGATGCCTC+AGG | + | 50581:5990-6009 | MS.gene072629:CDS | 50.0% |
| !! | CCGGTGGTCATTTTACAACG+TGG | + | 50581:6593-6612 | MS.gene072629:intron | 50.0% |
| GTAGGTGGTGCATGTGGGTA+TGG | + | 50581:6127-6146 | MS.gene072629:intron | 55.0% | |
| !! | GTGCCTCTGAGACACCATTG+AGG | - | 50581:6268-6287 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 50581 | gene | 5888 | 7089 | 5888 | ID=MS.gene072629 |
| 50581 | mRNA | 5888 | 7089 | 5888 | ID=MS.gene072629.t1;Parent=MS.gene072629 |
| 50581 | exon | 5888 | 6020 | 5888 | ID=MS.gene072629.t1.exon1;Parent=MS.gene072629.t1 |
| 50581 | CDS | 5888 | 6020 | 5888 | ID=cds.MS.gene072629.t1;Parent=MS.gene072629.t1 |
| 50581 | exon | 6131 | 6452 | 6131 | ID=MS.gene072629.t1.exon2;Parent=MS.gene072629.t1 |
| 50581 | CDS | 6131 | 6452 | 6131 | ID=cds.MS.gene072629.t1;Parent=MS.gene072629.t1 |
| 50581 | exon | 6780 | 7089 | 6780 | ID=MS.gene072629.t1.exon3;Parent=MS.gene072629.t1 |
| 50581 | CDS | 6780 | 7089 | 6780 | ID=cds.MS.gene072629.t1;Parent=MS.gene072629.t1 |
| Gene Sequence |
| Protein sequence |
