Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072928.t1 | XP_024633382.1 | 98.6 | 648 | 9 | 0 | 1 | 648 | 1 | 648 | 0.00E+00 | 1275.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072928.t1 | Q9SUU1 | 67.7 | 659 | 194 | 5 | 4 | 647 | 7 | 661 | 7.5e-262 | 904.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072928.t1 | G7JBM4 | 98.6 | 648 | 9 | 0 | 1 | 648 | 1 | 648 | 0.0e+00 | 1275.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050811 | MS.gene072928 | 0.826148 | 3.18E-54 | -1.69E-46 |
| MS.gene052289 | MS.gene072928 | 0.808439 | 3.10E-50 | -1.69E-46 |
| MS.gene054343 | MS.gene072928 | -0.800345 | 1.51E-48 | -1.69E-46 |
| MS.gene054344 | MS.gene072928 | -0.803487 | 3.41E-49 | -1.69E-46 |
| MS.gene059303 | MS.gene072928 | -0.831416 | 1.69E-55 | -1.69E-46 |
| MS.gene059480 | MS.gene072928 | 0.801962 | 7.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86346 | MS.gene072928 | PPI |
| MS.gene072928 | MS.gene37317 | PPI |
| MS.gene072928 | MS.gene89068 | PPI |
| MS.gene072928 | MS.gene026799 | PPI |
| MS.gene79489 | MS.gene072928 | PPI |
| MS.gene072928 | MS.gene034033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072928.t1 | MTR_3g107730 | 98.673 | 678 | 9 | 0 | 1 | 678 | 1 | 678 | 0.0 | 1391 |
| MS.gene072928.t1 | MTR_3g107730 | 98.441 | 513 | 8 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1047 |
| MS.gene072928.t1 | MTR_1g011840 | 76.316 | 646 | 149 | 2 | 3 | 647 | 2 | 644 | 0.0 | 1014 |
| MS.gene072928.t1 | MTR_0459s0020 | 68.885 | 646 | 191 | 5 | 4 | 643 | 15 | 656 | 0.0 | 896 |
| MS.gene072928.t1 | MTR_0366s0020 | 62.031 | 640 | 161 | 4 | 4 | 643 | 15 | 572 | 0.0 | 774 |
| MS.gene072928.t1 | MTR_7g110000 | 57.895 | 684 | 256 | 7 | 4 | 666 | 7 | 679 | 0.0 | 765 |
| MS.gene072928.t1 | MTR_2g032690 | 57.562 | 648 | 254 | 4 | 4 | 639 | 7 | 645 | 0.0 | 763 |
| MS.gene072928.t1 | MTR_3g077670 | 58.769 | 650 | 246 | 7 | 4 | 639 | 7 | 648 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072928.t1 | AT4G32510 | 67.115 | 669 | 206 | 5 | 4 | 660 | 7 | 673 | 0.0 | 933 |
| MS.gene072928.t1 | AT4G32510 | 66.766 | 671 | 209 | 5 | 4 | 662 | 7 | 675 | 0.0 | 931 |
| MS.gene072928.t1 | AT5G25430 | 66.308 | 650 | 213 | 2 | 3 | 647 | 8 | 656 | 0.0 | 922 |
| MS.gene072928.t1 | AT1G15460 | 66.156 | 653 | 205 | 3 | 5 | 647 | 13 | 659 | 0.0 | 910 |
| MS.gene072928.t1 | AT1G15460 | 66.156 | 653 | 205 | 3 | 5 | 647 | 13 | 659 | 0.0 | 910 |
| MS.gene072928.t1 | AT1G74810 | 65.291 | 654 | 211 | 4 | 4 | 647 | 12 | 659 | 0.0 | 884 |
| MS.gene072928.t1 | AT1G74810 | 65.291 | 654 | 211 | 4 | 4 | 647 | 12 | 659 | 0.0 | 884 |
| MS.gene072928.t1 | AT1G74810 | 65.291 | 654 | 211 | 4 | 4 | 647 | 12 | 659 | 0.0 | 884 |
| MS.gene072928.t1 | AT1G15460 | 67.647 | 612 | 188 | 2 | 5 | 606 | 13 | 624 | 0.0 | 872 |
| MS.gene072928.t1 | AT1G74810 | 65.440 | 625 | 200 | 4 | 33 | 647 | 9 | 627 | 0.0 | 843 |
| MS.gene072928.t1 | AT1G74810 | 65.440 | 625 | 200 | 4 | 33 | 647 | 9 | 627 | 0.0 | 843 |
| MS.gene072928.t1 | AT3G62270 | 58.012 | 674 | 263 | 6 | 4 | 666 | 7 | 671 | 0.0 | 789 |
| MS.gene072928.t1 | AT2G47160 | 58.605 | 674 | 258 | 6 | 4 | 666 | 7 | 670 | 0.0 | 785 |
| MS.gene072928.t1 | AT2G47160 | 56.509 | 699 | 258 | 7 | 4 | 666 | 7 | 695 | 0.0 | 772 |
| MS.gene072928.t1 | AT1G15460 | 64.222 | 559 | 184 | 3 | 99 | 647 | 1 | 553 | 0.0 | 756 |
| MS.gene072928.t1 | AT3G06450 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 753 |
| MS.gene072928.t1 | AT3G06450 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 753 |
| MS.gene072928.t1 | AT3G06450 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 753 |
| MS.gene072928.t1 | AT3G06450 | 56.522 | 644 | 263 | 8 | 4 | 639 | 9 | 643 | 0.0 | 753 |
| MS.gene072928.t1 | AT1G74810 | 63.148 | 559 | 190 | 4 | 99 | 647 | 1 | 553 | 0.0 | 728 |
| MS.gene072928.t1 | AT1G74810 | 63.218 | 522 | 176 | 4 | 136 | 647 | 1 | 516 | 0.0 | 674 |
Find 171 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTACCCGTGATTTATATATT+TGG | 0.189461 | 3.4:-93565484 | MS.gene072928:CDS |
| CGAGGCTTTATTGCAGATTA+TGG | 0.224792 | 3.4:-93565906 | MS.gene072928:CDS |
| TACCCGTGATTTATATATTT+GGG | 0.228711 | 3.4:-93565483 | MS.gene072928:CDS |
| AGAATTGCAGGGGAGTTATT+TGG | 0.243689 | 3.4:-93566360 | MS.gene072928:CDS |
| GGAATTATTCACTCAATTAT+AGG | 0.251240 | 3.4:-93566686 | MS.gene072928:CDS |
| CTGATTGGTTTATCGATAAT+AGG | 0.284857 | 3.4:-93564655 | MS.gene072928:CDS |
| ATTATAACAGGTTAAAGAAT+TGG | 0.285654 | 3.4:-93564815 | MS.gene072928:intron |
| ATGGCAATTGATAGTCTTCC+TGG | 0.286687 | 3.4:-93564577 | MS.gene072928:CDS |
| CAAAGAGTTTGGCAGTTCTT+AGG | 0.288036 | 3.4:-93565158 | MS.gene072928:CDS |
| GTCTTCCTGGGAATCAGTTC+TGG | 0.288459 | 3.4:-93564564 | MS.gene072928:CDS |
| TTTCTTTCAAGAGGCTATAA+AGG | 0.293379 | 3.4:-93566319 | MS.gene072928:intron |
| TGGTTAGGCTTGAATATCTT+TGG | 0.316056 | 3.4:+93564225 | None:intergenic |
| ATTACTTGTAACGCCGGCTT+GGG | 0.319641 | 3.4:+93564515 | None:intergenic |
| TGTGTTGCAGGGTTTGTATT+TGG | 0.323843 | 3.4:-93566446 | MS.gene072928:intron |
| TTACTATGATGCAGAGATAT+TGG | 0.337001 | 3.4:-93563907 | MS.gene072928:CDS |
| CTTTCGGAGAACAACTTAGT+AGG | 0.339784 | 3.4:-93566763 | MS.gene072928:CDS |
| GCGCTTCCTGTCATTGCTTT+CGG | 0.340497 | 3.4:-93566779 | MS.gene072928:CDS |
| CTTGGCCTTCCTCCTTCAAA+TGG | 0.362198 | 3.4:-93565207 | MS.gene072928:CDS |
| TACCAAGCTCTTTCTAGCTT+GGG | 0.365109 | 3.4:-93566570 | MS.gene072928:CDS |
| CTGTTGTTCCATGCATTCCT+TGG | 0.365305 | 3.4:+93565003 | None:intergenic |
| AGTGGACAAAACAGCCTTCT+AGG | 0.365772 | 3.4:+93565813 | None:intergenic |
| AGTACCAGCTCTGAATTATA+TGG | 0.368865 | 3.4:-93564980 | MS.gene072928:CDS |
| ACTAGATTTACAAGAATTGC+AGG | 0.384496 | 3.4:-93566372 | MS.gene072928:CDS |
| TCCCATGCATACAAAGAGTT+TGG | 0.386041 | 3.4:-93565169 | MS.gene072928:CDS |
| GCAAGCTGTGTTCATTGAAA+TGG | 0.395458 | 3.4:-93564951 | MS.gene072928:CDS |
| TGGGTCTGCGCAATCTGTTC+CGG | 0.400996 | 3.4:-93566925 | MS.gene072928:CDS |
| ATTCAAGCCTAACCATCTTC+AGG | 0.402816 | 3.4:-93564217 | MS.gene072928:CDS |
| GTACCAAGCTCTTTCTAGCT+TGG | 0.404814 | 3.4:-93566571 | MS.gene072928:CDS |
| CAATCAGGAGGGACTGCAAT+AGG | 0.410300 | 3.4:+93564671 | None:intergenic |
| TAATAATAATGACAGCATAT+TGG | 0.412439 | 3.4:-93566831 | MS.gene072928:intron |
| CTATTGCAGTCCCTCCTGAT+TGG | 0.417106 | 3.4:-93564670 | MS.gene072928:CDS |
| TTCCAAGTGGTGTTCCTAGA+AGG | 0.420451 | 3.4:-93565827 | MS.gene072928:CDS |
| TTAAATGCTATAAACAAGAT+TGG | 0.422231 | 3.4:-93566945 | MS.gene072928:CDS |
| AAAGCAAGATCATGGCGATA+TGG | 0.432577 | 3.4:-93566064 | MS.gene072928:CDS |
| GCGCAATCTGTTCCGGCGTT+AGG | 0.439948 | 3.4:-93566918 | MS.gene072928:intron |
| TTTGGCAGTTCTTAGGAGGC+AGG | 0.441887 | 3.4:-93565151 | MS.gene072928:intron |
| TGTAATGAAATCTGATACCA+AGG | 0.445347 | 3.4:-93564776 | MS.gene072928:CDS |
| TGGATGAGATGACAACCAAC+AGG | 0.447214 | 3.4:-93563887 | MS.gene072928:CDS |
| ACACCACTTGGAACGTCGTC+AGG | 0.447750 | 3.4:+93565837 | None:intergenic |
| ACTCTGATATGTGGTCTCCT+TGG | 0.450753 | 3.4:-93565225 | MS.gene072928:CDS |
| TTGGCATCTACTGCCATTTG+TGG | 0.452678 | 3.4:-93566707 | MS.gene072928:CDS |
| CTTTGTTCATTAACTCGGAC+TGG | 0.459027 | 3.4:+93564703 | None:intergenic |
| GCAAAGAATATGTAGAAAGT+TGG | 0.461025 | 3.4:+93566806 | None:intergenic |
| AATTACTTGTAACGCCGGCT+TGG | 0.462717 | 3.4:+93564514 | None:intergenic |
| TGAGTGAATAATTCCACAAA+TGG | 0.463157 | 3.4:+93566694 | None:intergenic |
| AGATACACATGCCTCATTTG+TGG | 0.466869 | 3.4:-93564397 | MS.gene072928:CDS |
| TCTGAGTATGAGGAAATTAT+CGG | 0.467463 | 3.4:-93564183 | MS.gene072928:CDS |
| ACTTGATGCTTCTGAGTATG+AGG | 0.470967 | 3.4:-93564193 | MS.gene072928:CDS |
| TAAGTATCTATGTATTTCTC+AGG | 0.471983 | 3.4:+93564730 | None:intergenic |
| TGCCAAACTCTTTGTATGCA+TGG | 0.474151 | 3.4:+93565167 | None:intergenic |
| AGAATTATGAGAAGGAAGAA+TGG | 0.475173 | 3.4:+93564264 | None:intergenic |
| AAGCTCTTTCTAGCTTGGGC+TGG | 0.476446 | 3.4:-93566566 | MS.gene072928:CDS |
| TCTTTCTAGCTTGGGCTGGT+TGG | 0.476758 | 3.4:-93566562 | MS.gene072928:intron |
| ATCCATTGGTATACCGCCAT+TGG | 0.477208 | 3.4:+93566140 | None:intergenic |
| ATTCCAGCTTTGATGATAGC+AGG | 0.478040 | 3.4:-93565454 | MS.gene072928:CDS |
| ATGTATTTCTCAGGATCAAA+AGG | 0.479705 | 3.4:+93564739 | None:intergenic |
| TAAATGCTATAAACAAGATT+GGG | 0.483293 | 3.4:-93566944 | MS.gene072928:CDS |
| ATAAAGAGATGCAGGTTCCC+AGG | 0.487430 | 3.4:+93565788 | None:intergenic |
| CAGAAAATATGCCAACTGTA+AGG | 0.487488 | 3.4:+93564338 | None:intergenic |
| TCTTGAATGATTCCCTCAAA+TGG | 0.488582 | 3.4:+93566982 | None:intergenic |
| CAAGTAGGAAAACATCATAA+TGG | 0.491729 | 3.4:+93565353 | None:intergenic |
| AATCCAGCTATGGTCTTGAA+TGG | 0.492132 | 3.4:+93564366 | None:intergenic |
| CTCCTAAAATCAACAAAGGT+TGG | 0.498920 | 3.4:+93566660 | None:intergenic |
| TCTTCCTGGGAATCAGTTCT+GGG | 0.500146 | 3.4:-93564563 | MS.gene072928:CDS |
| TAGGCATCTCCGTTATCAAA+AGG | 0.509147 | 3.4:-93564636 | MS.gene072928:CDS |
| GTCCAGTGATAAAGAGATGC+AGG | 0.510174 | 3.4:+93565780 | None:intergenic |
| TAACATGGGAGCACCATTTG+AGG | 0.510206 | 3.4:-93566995 | None:intergenic |
| AACATGGGAGCACCATTTGA+GGG | 0.512969 | 3.4:-93566994 | MS.gene072928:CDS |
| TGTTCTGTTTCGGGGTCACA+TGG | 0.513903 | 3.4:-93564317 | MS.gene072928:CDS |
| GATGCAGGTTCCCAGGGAAG+TGG | 0.514690 | 3.4:+93565795 | None:intergenic |
| TCATTCTTTGTTCATTAACT+CGG | 0.516096 | 3.4:+93564698 | None:intergenic |
| AAACCTGCTATCATCAAAGC+TGG | 0.519396 | 3.4:+93565451 | None:intergenic |
| TTTCGGAGAACAACTTAGTA+GGG | 0.520810 | 3.4:-93566762 | MS.gene072928:CDS |
| AAGCATCAAGTTCCTGAAGA+TGG | 0.521659 | 3.4:+93564205 | None:intergenic |
| GTACCATTCAAGACCATAGC+TGG | 0.525744 | 3.4:-93564369 | MS.gene072928:CDS |
| CAGTACGTAGTATGTCACTC+AGG | 0.526268 | 3.4:-93564149 | MS.gene072928:CDS |
| TCTACAAACTGCAGGATATG+TGG | 0.526801 | 3.4:-93565510 | MS.gene072928:intron |
| AACCTGCATCTCTTTATCAC+TGG | 0.527373 | 3.4:-93565782 | MS.gene072928:CDS |
| CTTCATTGAAGCTGTTACTG+TGG | 0.527596 | 3.4:+93563769 | None:intergenic |
| GTCCACAACACTACCATCAC+TGG | 0.527804 | 3.4:+93565879 | None:intergenic |
| AGGTTCCATTGCACAACCCT+TGG | 0.529505 | 3.4:+93564759 | None:intergenic |
| TCAAGTTCCTGAAGATGGTT+AGG | 0.529736 | 3.4:+93564210 | None:intergenic |
| CTATTATCGATAAACCAATC+AGG | 0.530355 | 3.4:+93564656 | None:intergenic |
| TGCCCCAAATATATAAATCA+CGG | 0.532143 | 3.4:+93565480 | None:intergenic |
| GCCAAACTCTTTGTATGCAT+GGG | 0.535179 | 3.4:+93565168 | None:intergenic |
| AAGTTTCAACTCTCCCCTGT+TGG | 0.535774 | 3.4:+93563872 | None:intergenic |
| ATTTGCAGCTGATCCGAAAG+AGG | 0.538031 | 3.4:-93565039 | MS.gene072928:intron |
| CTTTCCCAGAACTGATTCCC+AGG | 0.538850 | 3.4:+93564559 | None:intergenic |
| TGTGGAAGGACTCCATTTGA+AGG | 0.542425 | 3.4:+93565195 | None:intergenic |
| AGCCCAAGCTAGAAAGAGCT+TGG | 0.543809 | 3.4:+93566568 | None:intergenic |
| TTCCAGTGATGGTAGTGTTG+TGG | 0.547605 | 3.4:-93565881 | MS.gene072928:CDS |
| TAAGTGTACATTATAACAGT+TGG | 0.548681 | 3.4:+93566629 | None:intergenic |
| TCCTCTTCGTCACCCCAAGC+CGG | 0.550263 | 3.4:-93564528 | MS.gene072928:CDS |
| GCCCCAAATATATAAATCAC+GGG | 0.551841 | 3.4:+93565481 | None:intergenic |
| ACCCGTGATTTATATATTTG+GGG | 0.552067 | 3.4:-93565482 | MS.gene072928:CDS |
| TTCCAATGGCGGTATACCAA+TGG | 0.553783 | 3.4:-93566142 | MS.gene072928:CDS |
| TCATAGCGTGGCTTCTCAGA+TGG | 0.555026 | 3.4:-93565416 | MS.gene072928:CDS |
| TAGGAAAACATCATAATGGT+AGG | 0.556385 | 3.4:+93565357 | None:intergenic |
| AGAGTTTGGCAGTTCTTAGG+AGG | 0.556567 | 3.4:-93565155 | MS.gene072928:CDS |
| AGCCTTCTAGGAACACCACT+TGG | 0.556893 | 3.4:+93565825 | None:intergenic |
| TAGGCTTGAATATCTTTGGA+AGG | 0.557117 | 3.4:+93564229 | None:intergenic |
| AAAGCAGAAAAGCAAGATCA+TGG | 0.557963 | 3.4:-93566072 | MS.gene072928:CDS |
| AATGACTGCGAGTAATCCAT+TGG | 0.562499 | 3.4:+93566126 | None:intergenic |
| GACATACTACGTACTGCAGA+TGG | 0.563507 | 3.4:+93564156 | None:intergenic |
| TGGATTTACAGCCTTACAGT+TGG | 0.564075 | 3.4:-93564349 | MS.gene072928:CDS |
| CCACGTGATAGTGATAATGA+TGG | 0.565884 | 3.4:-93563942 | MS.gene072928:CDS |
| ATGAGAAGGAAGAATGGTAG+CGG | 0.566015 | 3.4:+93564270 | None:intergenic |
| AATTGCAATTCCTCCGACGA+AGG | 0.567377 | 3.4:+93566163 | None:intergenic |
| TTGCAGGGTTTGTATTTGGA+CGG | 0.567947 | 3.4:-93566442 | MS.gene072928:intron |
| TGTTCTCCGAAAGCAATGAC+AGG | 0.569284 | 3.4:+93566773 | None:intergenic |
| CTGGGAATCAGTTCTGGGAA+AGG | 0.571040 | 3.4:-93564558 | MS.gene072928:CDS |
| GATCATTGAAGCTGTTACTG+TGG | 0.571270 | 3.4:+93563796 | None:intergenic |
| CTTGAGCACTGTAGAAACAT+TGG | 0.571302 | 3.4:-93566726 | MS.gene072928:CDS |
| TGATACCAAGGGTTGTGCAA+TGG | 0.575807 | 3.4:-93564764 | MS.gene072928:CDS |
| TGGTACTGTCTCCACAAATG+AGG | 0.576656 | 3.4:+93564386 | None:intergenic |
| CAGGAGGGACTGCAATAGGT+TGG | 0.576763 | 3.4:+93564675 | None:intergenic |
| GGAATCATTCAAGATGTCAA+AGG | 0.583983 | 3.4:-93566973 | MS.gene072928:CDS |
| TATCCCCATAAAACCGAGGT+AGG | 0.584080 | 3.4:+93564610 | None:intergenic |
| AGATTATGGTGTTCCAGTGA+TGG | 0.584710 | 3.4:-93565892 | MS.gene072928:CDS |
| CGGAGGAATTGCAATTCCAA+TGG | 0.585619 | 3.4:-93566156 | MS.gene072928:CDS |
| ACATCATAATGGTAGGCAGA+TGG | 0.586423 | 3.4:+93565364 | None:intergenic |
| GCCGGCTTGGGGTGACGAAG+AGG | 0.586471 | 3.4:+93564527 | None:intergenic |
| GGACTCCATTTGAAGGAGGA+AGG | 0.587102 | 3.4:+93565202 | None:intergenic |
| CTAGATTTACAAGAATTGCA+GGG | 0.588173 | 3.4:-93566371 | MS.gene072928:CDS |
| AGTCTTTAGACTCTGATATG+TGG | 0.592532 | 3.4:-93565234 | MS.gene072928:intron |
| TGGCAATTGATAGTCTTCCT+GGG | 0.593727 | 3.4:-93564576 | MS.gene072928:CDS |
| GAAAAGCGCCAAGGAATGCA+TGG | 0.594390 | 3.4:-93565011 | MS.gene072928:CDS |
| TTTGCAGCTGATCCGAAAGA+GGG | 0.595342 | 3.4:-93565038 | MS.gene072928:intron |
| TAAGGCTGTAAATCCAGCTA+TGG | 0.595564 | 3.4:+93564356 | None:intergenic |
| TAGTGATAATGATGGAAGCT+CGG | 0.596596 | 3.4:-93563934 | MS.gene072928:CDS |
| TACTCAATTACTTGTAACGC+CGG | 0.600590 | 3.4:+93564509 | None:intergenic |
| GCTTGAATATCTTTGGAAGG+AGG | 0.601711 | 3.4:+93564232 | None:intergenic |
| AAGAGCTTGGTACCCAGTTG+AGG | 0.604187 | 3.4:+93566581 | None:intergenic |
| AGGCGAGTTCAGCACTCCCA+AGG | 0.604329 | 3.4:-93566194 | MS.gene072928:CDS |
| TTTGAACCACAGGGACTGGT+AGG | 0.604416 | 3.4:-93566214 | MS.gene072928:intron |
| GGAAACAATATTCCACCTAT+CGG | 0.607030 | 3.4:+93564291 | None:intergenic |
| GATCATTGAAGCTGTTACTG+CGG | 0.608964 | 3.4:+93563823 | None:intergenic |
| ATTATTCACTCAATTATAGG+TGG | 0.609337 | 3.4:-93566683 | MS.gene072928:CDS |
| CAAGGTTGAAAATCCTTCGT+CGG | 0.611167 | 3.4:-93566176 | MS.gene072928:CDS |
| TGAATTAAATTACCTAACGC+CGG | 0.611783 | 3.4:+93566906 | None:intergenic |
| GGATGAGATGACAACCAACA+GGG | 0.624263 | 3.4:-93563886 | MS.gene072928:CDS |
| TAAAGAGATGCAGGTTCCCA+GGG | 0.625123 | 3.4:+93565789 | None:intergenic |
| GTTCTCTGAGAATTATGAGA+AGG | 0.627074 | 3.4:+93564256 | None:intergenic |
| TTATCACTGGACAGTAGTGA+AGG | 0.627297 | 3.4:-93565769 | MS.gene072928:intron |
| CAACTTAGTAGGGATACAGA+TGG | 0.633505 | 3.4:-93566752 | MS.gene072928:CDS |
| TAGATTTACAAGAATTGCAG+GGG | 0.635506 | 3.4:-93566370 | MS.gene072928:CDS |
| GGTTGAAAATCCTTCGTCGG+AGG | 0.639194 | 3.4:-93566173 | MS.gene072928:CDS |
| GGGGTCACATGGATACCGAT+AGG | 0.640094 | 3.4:-93564306 | MS.gene072928:CDS |
| TTTGTATGCATGGGAGACTG+TGG | 0.640494 | 3.4:+93565177 | None:intergenic |
| TTCAATTCAGGGAGGCTACG+AGG | 0.640834 | 3.4:-93565924 | MS.gene072928:intron |
| TATCAAAAGGATACCTACCT+CGG | 0.648218 | 3.4:-93564623 | MS.gene072928:CDS |
| TTATCGATAAACCAATCAGG+AGG | 0.649930 | 3.4:+93564659 | None:intergenic |
| TTACTTGTAACGCCGGCTTG+GGG | 0.651277 | 3.4:+93564516 | None:intergenic |
| CAAACTGCAGGATATGTGGA+AGG | 0.653071 | 3.4:-93565506 | MS.gene072928:intron |
| GCAACTCCTAAAATCAACAA+AGG | 0.653603 | 3.4:+93566656 | None:intergenic |
| CATTTGAAGGAGGAAGGCCA+AGG | 0.657670 | 3.4:+93565208 | None:intergenic |
| GTCACATGGATACCGATAGG+TGG | 0.659868 | 3.4:-93564303 | MS.gene072928:CDS |
| AACAGACCATTATTCCAAGT+AGG | 0.662683 | 3.4:+93565338 | None:intergenic |
| TATCGATAAACCAATCAGGA+GGG | 0.666981 | 3.4:+93564660 | None:intergenic |
| GAAAGCAATGACAGGAAGCG+CGG | 0.670114 | 3.4:+93566781 | None:intergenic |
| ATGCCTGACGACGTTCCAAG+TGG | 0.671559 | 3.4:-93565840 | MS.gene072928:CDS |
| AGGAATTGCAATTCCAATGG+CGG | 0.673504 | 3.4:-93566153 | MS.gene072928:CDS |
| AGTACGTAGTATGTCACTCA+GGG | 0.676575 | 3.4:-93564148 | MS.gene072928:intron |
| GGAAGGACTCCATTTGAAGG+AGG | 0.676893 | 3.4:+93565198 | None:intergenic |
| TATGCATGGGAGACTGTGGA+AGG | 0.677272 | 3.4:+93565181 | None:intergenic |
| GTAATGAAATCTGATACCAA+GGG | 0.682765 | 3.4:-93564775 | MS.gene072928:CDS |
| AAAATATCCCCATAAAACCG+AGG | 0.688473 | 3.4:+93564606 | None:intergenic |
| GAGGGTTGTGAAAAGCGCCA+AGG | 0.688617 | 3.4:-93565020 | MS.gene072928:CDS |
| CCTAACAATACATACAGTAG+GGG | 0.689459 | 3.4:+93564922 | None:intergenic |
| CCATCATTATCACTATCACG+TGG | 0.692316 | 3.4:+93563942 | None:intergenic |
| GATGAGATGACAACCAACAG+GGG | 0.715278 | 3.4:-93563885 | MS.gene072928:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAATTGCTTA+AGG | + | chr3.4:93564747-93564766 | None:intergenic | 10.0% |
| !!! | TAAATGCTTAAATATATTTT+TGG | + | chr3.4:93566709-93566728 | None:intergenic | 10.0% |
| !!! | TTAAGCAATTTTTTTTTTTT+TGG | - | chr3.4:93564746-93564765 | MS.gene072928:CDS | 10.0% |
| !! | AAATACATTGTGTATTTAAT+TGG | - | chr3.4:93564488-93564507 | MS.gene072928:intron | 15.0% |
| !! | ATTCTTTAAATTTCTGTTTA+AGG | - | chr3.4:93564226-93564245 | MS.gene072928:CDS | 15.0% |
| !! | TTCTTTAAATTTCTGTTTAA+GGG | - | chr3.4:93564227-93564246 | MS.gene072928:CDS | 15.0% |
| !! | ATAACATAAATCCAAATTCT+AGG | + | chr3.4:93565447-93565466 | None:intergenic | 20.0% |
| !! | ATTATAACAGGTTAAAGAAT+TGG | - | chr3.4:93565931-93565950 | MS.gene072928:intron | 20.0% |
| !! | CTACATTGAAAAAAAAGTTT+AGG | + | chr3.4:93566271-93566290 | None:intergenic | 20.0% |
| !! | TAAATGCTATAAACAAGATT+GGG | - | chr3.4:93563802-93563821 | MS.gene072928:CDS | 20.0% |
| !! | TAATAATAATGACAGCATAT+TGG | - | chr3.4:93563915-93563934 | MS.gene072928:CDS | 20.0% |
| !! | TTAAATGCTATAAACAAGAT+TGG | - | chr3.4:93563801-93563820 | MS.gene072928:CDS | 20.0% |
| !!! | GTTGGTTTTTAAATTATAAC+AGG | - | chr3.4:93565919-93565938 | MS.gene072928:intron | 20.0% |
| !!! | TGTATAAAAAGAAAGCATTT+TGG | + | chr3.4:93565040-93565059 | None:intergenic | 20.0% |
| !!! | TTCTTATTTTTGTTAGAAAG+AGG | + | chr3.4:93564469-93564488 | None:intergenic | 20.0% |
| ! | AATGCAAGAATAAAGATCAT+TGG | + | chr3.4:93564803-93564822 | None:intergenic | 25.0% |
| ! | ACACCTTGAATATTAAGTAT+TGG | + | chr3.4:93565117-93565136 | None:intergenic | 25.0% |
| ! | ATTATTCACTCAATTATAGG+TGG | - | chr3.4:93564063-93564082 | MS.gene072928:intron | 25.0% |
| ! | GATTGACATAATTATCTCTA+TGG | - | chr3.4:93565487-93565506 | MS.gene072928:CDS | 25.0% |
| ! | GGAATTATTCACTCAATTAT+AGG | - | chr3.4:93564060-93564079 | MS.gene072928:intron | 25.0% |
| ! | GTTAGACTTATATGGATATT+AGG | + | chr3.4:93565212-93565231 | None:intergenic | 25.0% |
| ! | TAAGTATCTATGTATTTCTC+AGG | + | chr3.4:93566019-93566038 | None:intergenic | 25.0% |
| ! | TAAGTGTACATTATAACAGT+TGG | + | chr3.4:93564120-93564139 | None:intergenic | 25.0% |
| ! | TACCCGTGATTTATATATTT+GGG | - | chr3.4:93565263-93565282 | MS.gene072928:intron | 25.0% |
| ! | TATTCTTGCATTTCAATTCA+GGG | - | chr3.4:93564811-93564830 | MS.gene072928:intron | 25.0% |
| ! | TCATTCTTTGTTCATTAACT+CGG | + | chr3.4:93566051-93566070 | None:intergenic | 25.0% |
| ! | TTATTCTTGCATTTCAATTC+AGG | - | chr3.4:93564810-93564829 | MS.gene072928:intron | 25.0% |
| !!! | AGTCGTGATCATTTTAATTT+AGG | - | chr3.4:93565181-93565200 | MS.gene072928:CDS | 25.0% |
| !!! | TTTGTTTTCTTCCTAGAATT+TGG | - | chr3.4:93565433-93565452 | MS.gene072928:CDS | 25.0% |
| AAATTGCTTAAGGTCTAATG+TGG | + | chr3.4:93564737-93564756 | None:intergenic | 30.0% | |
| AACCTAACAATACATACAGT+AGG | + | chr3.4:93565829-93565848 | None:intergenic | 30.0% | |
| ACAAAAATTGTTTGAACCAC+AGG | - | chr3.4:93564522-93564541 | MS.gene072928:CDS | 30.0% | |
| ACCAAATTCAAATCCTAAGT+TGG | + | chr3.4:93566768-93566787 | None:intergenic | 30.0% | |
| ACCCGTGATTTATATATTTG+GGG | - | chr3.4:93565264-93565283 | MS.gene072928:intron | 30.0% | |
| ACCTAACAATACATACAGTA+GGG | + | chr3.4:93565828-93565847 | None:intergenic | 30.0% | |
| ACTAGATTTACAAGAATTGC+AGG | - | chr3.4:93564374-93564393 | MS.gene072928:CDS | 30.0% | |
| AGAATTATGAGAAGGAAGAA+TGG | + | chr3.4:93566485-93566504 | None:intergenic | 30.0% | |
| ATGTATTTCTCAGGATCAAA+AGG | + | chr3.4:93566010-93566029 | None:intergenic | 30.0% | |
| CAAAAATTGTTTGAACCACA+GGG | - | chr3.4:93564523-93564542 | MS.gene072928:CDS | 30.0% | |
| CAAGTAGGAAAACATCATAA+TGG | + | chr3.4:93565396-93565415 | None:intergenic | 30.0% | |
| CTAGATTTACAAGAATTGCA+GGG | - | chr3.4:93564375-93564394 | MS.gene072928:CDS | 30.0% | |
| CTATTATCGATAAACCAATC+AGG | + | chr3.4:93566093-93566112 | None:intergenic | 30.0% | |
| GAAAAAAAAGTTTAGGCACA+AGG | + | chr3.4:93566264-93566283 | None:intergenic | 30.0% | |
| GATACTAATACACATAGTGT+TGG | - | chr3.4:93565901-93565920 | MS.gene072928:CDS | 30.0% | |
| GCAAAGAATATGTAGAAAGT+TGG | + | chr3.4:93563943-93563962 | None:intergenic | 30.0% | |
| GCACCAATACTTAATATTCA+AGG | - | chr3.4:93565111-93565130 | MS.gene072928:intron | 30.0% | |
| GTAATGAAATCTGATACCAA+GGG | - | chr3.4:93565971-93565990 | MS.gene072928:intron | 30.0% | |
| GTACCCGTGATTTATATATT+TGG | - | chr3.4:93565262-93565281 | MS.gene072928:intron | 30.0% | |
| TAAAGATCATTGGAGTGATA+AGG | + | chr3.4:93564793-93564812 | None:intergenic | 30.0% | |
| TAGAAGCTGTTAGACTTATA+TGG | + | chr3.4:93565220-93565239 | None:intergenic | 30.0% | |
| TAGATTTACAAGAATTGCAG+GGG | - | chr3.4:93564376-93564395 | MS.gene072928:CDS | 30.0% | |
| TAGGAAAACATCATAATGGT+AGG | + | chr3.4:93565392-93565411 | None:intergenic | 30.0% | |
| TCCAACTTAGGATTTGAATT+TGG | - | chr3.4:93566764-93566783 | MS.gene072928:CDS | 30.0% | |
| TCTGAGTATGAGGAAATTAT+CGG | - | chr3.4:93566563-93566582 | MS.gene072928:CDS | 30.0% | |
| TGAATTAAATTACCTAACGC+CGG | + | chr3.4:93563843-93563862 | None:intergenic | 30.0% | |
| TGAGTGAATAATTCCACAAA+TGG | + | chr3.4:93564055-93564074 | None:intergenic | 30.0% | |
| TGCCCCAAATATATAAATCA+CGG | + | chr3.4:93565269-93565288 | None:intergenic | 30.0% | |
| TGTAATGAAATCTGATACCA+AGG | - | chr3.4:93565970-93565989 | MS.gene072928:intron | 30.0% | |
| TTACTATGATGCAGAGATAT+TGG | - | chr3.4:93566839-93566858 | MS.gene072928:intron | 30.0% | |
| TTGAGAAGAAATTAAGAACC+AGG | + | chr3.4:93565650-93565669 | None:intergenic | 30.0% | |
| TTTCTTTCAAGAGGCTATAA+AGG | - | chr3.4:93564427-93564446 | MS.gene072928:intron | 30.0% | |
| ! | ACGAACATTTTAGATCGATA+CGG | + | chr3.4:93564277-93564296 | None:intergenic | 30.0% |
| ! | ATATTTTCTGTTCTGTTTCG+GGG | - | chr3.4:93566421-93566440 | MS.gene072928:CDS | 30.0% |
| ! | CATATTTTCTGTTCTGTTTC+GGG | - | chr3.4:93566420-93566439 | MS.gene072928:CDS | 30.0% |
| ! | CATCGATATATTTTGCATCA+AGG | - | chr3.4:93565622-93565641 | MS.gene072928:intron | 30.0% |
| ! | CATTATGATGTTTTCCTACT+TGG | - | chr3.4:93565394-93565413 | MS.gene072928:CDS | 30.0% |
| ! | GCATATTTTCTGTTCTGTTT+CGG | - | chr3.4:93566419-93566438 | MS.gene072928:CDS | 30.0% |
| ! | GTCATTGTCTTGTATGTTTT+GGG | - | chr3.4:93566314-93566333 | MS.gene072928:intron | 30.0% |
| ! | TGTCATTGTCTTGTATGTTT+TGG | - | chr3.4:93566313-93566332 | MS.gene072928:intron | 30.0% |
| ! | TGTTTTCCTACTTGGAATAA+TGG | - | chr3.4:93565402-93565421 | MS.gene072928:CDS | 30.0% |
| ! | TTTTCCATATAATTCAGAGC+TGG | + | chr3.4:93565773-93565792 | None:intergenic | 30.0% |
| !! | CTAATGTGGTATTGGATTTT+TGG | + | chr3.4:93564723-93564742 | None:intergenic | 30.0% |
| !! | CTGATTGGTTTATCGATAAT+AGG | - | chr3.4:93566091-93566110 | MS.gene072928:CDS | 30.0% |
| !!! | TCGCAGTCATTTTTTCTTTT+GGG | - | chr3.4:93564632-93564651 | MS.gene072928:CDS | 30.0% |
| AAAATATCCCCATAAAACCG+AGG | + | chr3.4:93566143-93566162 | None:intergenic | 35.0% | |
| AAAGCAGAAAAGCAAGATCA+TGG | - | chr3.4:93564674-93564693 | MS.gene072928:CDS | 35.0% | |
| AACAGACCATTATTCCAAGT+AGG | + | chr3.4:93565411-93565430 | None:intergenic | 35.0% | |
| AATGTTCGTATTTGTGTTGC+AGG | - | chr3.4:93564288-93564307 | MS.gene072928:CDS | 35.0% | |
| AGTCTTTAGACTCTGATATG+TGG | - | chr3.4:93565512-93565531 | MS.gene072928:intron | 35.0% | |
| ATGTTCGTATTTGTGTTGCA+GGG | - | chr3.4:93564289-93564308 | MS.gene072928:CDS | 35.0% | |
| CAGAAAATATGCCAACTGTA+AGG | + | chr3.4:93566411-93566430 | None:intergenic | 35.0% | |
| CCTAACAATACATACAGTAG+GGG | + | chr3.4:93565827-93565846 | None:intergenic | 35.0% | |
| CTCCTAAAATCAACAAAGGT+TGG | + | chr3.4:93564089-93564108 | None:intergenic | 35.0% | |
| CTCTACAGACATACATTACA+TGG | + | chr3.4:93565092-93565111 | None:intergenic | 35.0% | |
| CTTAAGGTCTAATGTGGTAT+TGG | + | chr3.4:93564731-93564750 | None:intergenic | 35.0% | |
| GAATTTGGTTGATCAGGATA+GGG | - | chr3.4:93566779-93566798 | MS.gene072928:CDS | 35.0% | |
| GCAACTCCTAAAATCAACAA+AGG | + | chr3.4:93564093-93564112 | None:intergenic | 35.0% | |
| GCCCCAAATATATAAATCAC+GGG | + | chr3.4:93565268-93565287 | None:intergenic | 35.0% | |
| GGAAACAATATTCCACCTAT+CGG | + | chr3.4:93566458-93566477 | None:intergenic | 35.0% | |
| GGAATCATTCAAGATGTCAA+AGG | - | chr3.4:93563773-93563792 | MS.gene072928:CDS | 35.0% | |
| GGATTTGAATTTGGTTGATC+AGG | - | chr3.4:93566773-93566792 | MS.gene072928:CDS | 35.0% | |
| TACTCAATTACTTGTAACGC+CGG | + | chr3.4:93566240-93566259 | None:intergenic | 35.0% | |
| TAGGCTTGAATATCTTTGGA+AGG | + | chr3.4:93566520-93566539 | None:intergenic | 35.0% | |
| TATCAAAAGGATACCTACCT+CGG | - | chr3.4:93566123-93566142 | MS.gene072928:CDS | 35.0% | |
| TATCGATAAACCAATCAGGA+GGG | + | chr3.4:93566089-93566108 | None:intergenic | 35.0% | |
| TCTTGAATGATTCCCTCAAA+TGG | + | chr3.4:93563767-93563786 | None:intergenic | 35.0% | |
| TGAATTTGGTTGATCAGGAT+AGG | - | chr3.4:93566778-93566797 | MS.gene072928:CDS | 35.0% | |
| TGCAAAAATACACCTCAACT+GGG | - | chr3.4:93564153-93564172 | MS.gene072928:CDS | 35.0% | |
| TGGTTAGGCTTGAATATCTT+TGG | + | chr3.4:93566524-93566543 | None:intergenic | 35.0% | |
| TTATCGATAAACCAATCAGG+AGG | + | chr3.4:93566090-93566109 | None:intergenic | 35.0% | |
| TTTCGGAGAACAACTTAGTA+GGG | - | chr3.4:93563984-93564003 | MS.gene072928:intron | 35.0% | |
| ! | AAATCCTAAGTTGGAAAGCT+TGG | + | chr3.4:93566759-93566778 | None:intergenic | 35.0% |
| ! | ATGGGGATATTTTGCTTACA+TGG | - | chr3.4:93566150-93566169 | MS.gene072928:CDS | 35.0% |
| ! | CACTGTTCTTTTCTTTCAAG+AGG | - | chr3.4:93564418-93564437 | MS.gene072928:intron | 35.0% |
| ! | GGTAGGTATCCTTTTGATAA+CGG | + | chr3.4:93566122-93566141 | None:intergenic | 35.0% |
| ! | GTTCTCTGAGAATTATGAGA+AGG | + | chr3.4:93566493-93566512 | None:intergenic | 35.0% |
| ! | TAGTGATAATGATGGAAGCT+CGG | - | chr3.4:93566812-93566831 | MS.gene072928:CDS | 35.0% |
| !! | AGTACCAGCTCTGAATTATA+TGG | - | chr3.4:93565766-93565785 | MS.gene072928:intron | 35.0% |
| !!! | ATACTTTTTCGATCATAGCG+TGG | - | chr3.4:93565318-93565337 | MS.gene072928:intron | 35.0% |
| !!! | CTCGCAGTCATTTTTTCTTT+TGG | - | chr3.4:93564631-93564650 | MS.gene072928:CDS | 35.0% |
| AAACCTGCTATCATCAAAGC+TGG | + | chr3.4:93565298-93565317 | None:intergenic | 40.0% | |
| AAAGCAAGATCATGGCGATA+TGG | - | chr3.4:93564682-93564701 | MS.gene072928:CDS | 40.0% | |
| AACCTGCATCTCTTTATCAC+TGG | - | chr3.4:93564964-93564983 | MS.gene072928:CDS | 40.0% | |
| AAGCATCAAGTTCCTGAAGA+TGG | + | chr3.4:93566544-93566563 | None:intergenic | 40.0% | |
| AATGACTGCGAGTAATCCAT+TGG | + | chr3.4:93564623-93564642 | None:intergenic | 40.0% | |
| ACATCATAATGGTAGGCAGA+TGG | + | chr3.4:93565385-93565404 | None:intergenic | 40.0% | |
| ACTTGATGCTTCTGAGTATG+AGG | - | chr3.4:93566553-93566572 | MS.gene072928:intron | 40.0% | |
| AGAATTGCAGGGGAGTTATT+TGG | - | chr3.4:93564386-93564405 | MS.gene072928:CDS | 40.0% | |
| AGATACACATGCCTCATTTG+TGG | - | chr3.4:93566349-93566368 | MS.gene072928:CDS | 40.0% | |
| AGATTATGGTGTTCCAGTGA+TGG | - | chr3.4:93564854-93564873 | MS.gene072928:intron | 40.0% | |
| AGGAATTGCAATTCCAATGG+CGG | - | chr3.4:93564593-93564612 | MS.gene072928:CDS | 40.0% | |
| AGTACGTAGTATGTCACTCA+GGG | - | chr3.4:93566598-93566617 | MS.gene072928:CDS | 40.0% | |
| ATGAGAAGGAAGAATGGTAG+CGG | + | chr3.4:93566479-93566498 | None:intergenic | 40.0% | |
| ATTCAAGCCTAACCATCTTC+AGG | - | chr3.4:93566529-93566548 | MS.gene072928:intron | 40.0% | |
| CAAAGAGTTTGGCAGTTCTT+AGG | - | chr3.4:93565588-93565607 | MS.gene072928:intron | 40.0% | |
| CAAATCAATGGTGCAACACA+AGG | + | chr3.4:93565692-93565711 | None:intergenic | 40.0% | |
| CAACTTAGTAGGGATACAGA+TGG | - | chr3.4:93563994-93564013 | MS.gene072928:intron | 40.0% | |
| CAAGGTTGAAAATCCTTCGT+CGG | - | chr3.4:93564570-93564589 | MS.gene072928:CDS | 40.0% | |
| CACTAACACGTGTCATACAT+CGG | + | chr3.4:93565142-93565161 | None:intergenic | 40.0% | |
| CCATCATTATCACTATCACG+TGG | + | chr3.4:93566807-93566826 | None:intergenic | 40.0% | |
| CCCCTACTGTATGTATTGTT+AGG | - | chr3.4:93565824-93565843 | MS.gene072928:CDS | 40.0% | |
| CTGCAAAAATACACCTCAAC+TGG | - | chr3.4:93564152-93564171 | MS.gene072928:CDS | 40.0% | |
| CTTCATTGAAGCTGTTACTG+TGG | + | chr3.4:93566980-93566999 | None:intergenic | 40.0% | |
| CTTTCGGAGAACAACTTAGT+AGG | - | chr3.4:93563983-93564002 | MS.gene072928:intron | 40.0% | |
| CTTTGTTCATTAACTCGGAC+TGG | + | chr3.4:93566046-93566065 | None:intergenic | 40.0% | |
| GATCATTGAAGCTGTTACTG+CGG | + | chr3.4:93566926-93566945 | None:intergenic | 40.0% | |
| GATCATTGAAGCTGTTACTG+TGG | + | chr3.4:93566926-93566945 | None:intergenic | 40.0% | |
| GCAAGCTGTGTTCATTGAAA+TGG | - | chr3.4:93565795-93565814 | MS.gene072928:CDS | 40.0% | |
| GCCAAACTCTTTGTATGCAT+GGG | + | chr3.4:93565581-93565600 | None:intergenic | 40.0% | |
| TAACAGCTTCTACAAACTGC+AGG | - | chr3.4:93565228-93565247 | MS.gene072928:CDS | 40.0% | |
| TAAGGCTGTAAATCCAGCTA+TGG | + | chr3.4:93566393-93566412 | None:intergenic | 40.0% | |
| TACTCCAAGCTTTCCAACTT+AGG | - | chr3.4:93566752-93566771 | MS.gene072928:CDS | 40.0% | |
| TAGGCATCTCCGTTATCAAA+AGG | - | chr3.4:93566110-93566129 | MS.gene072928:CDS | 40.0% | |
| TCAAGTTCCTGAAGATGGTT+AGG | + | chr3.4:93566539-93566558 | None:intergenic | 40.0% | |
| TCCCATGCATACAAAGAGTT+TGG | - | chr3.4:93565577-93565596 | MS.gene072928:intron | 40.0% | |
| TCTACAAACTGCAGGATATG+TGG | - | chr3.4:93565236-93565255 | MS.gene072928:intron | 40.0% | |
| TCTTGCATTTCAATTCAGGG+AGG | - | chr3.4:93564814-93564833 | MS.gene072928:intron | 40.0% | |
| TGCCAAACTCTTTGTATGCA+TGG | + | chr3.4:93565582-93565601 | None:intergenic | 40.0% | |
| TGGATTTACAGCCTTACAGT+TGG | - | chr3.4:93566397-93566416 | MS.gene072928:CDS | 40.0% | |
| TGTGTTGCAGGGTTTGTATT+TGG | - | chr3.4:93564300-93564319 | MS.gene072928:CDS | 40.0% | |
| TTATCACTGGACAGTAGTGA+AGG | - | chr3.4:93564977-93564996 | MS.gene072928:CDS | 40.0% | |
| TTGCAGGGTTTGTATTTGGA+CGG | - | chr3.4:93564304-93564323 | MS.gene072928:CDS | 40.0% | |
| ! | AATCCAGCTATGGTCTTGAA+TGG | + | chr3.4:93566383-93566402 | None:intergenic | 40.0% |
| ! | ATATTTTGCATCAAGGCTCC+TGG | - | chr3.4:93565629-93565648 | MS.gene072928:intron | 40.0% |
| ! | ATGGCAATTGATAGTCTTCC+TGG | - | chr3.4:93566169-93566188 | MS.gene072928:CDS | 40.0% |
| ! | ATTCCAGCTTTGATGATAGC+AGG | - | chr3.4:93565292-93565311 | MS.gene072928:intron | 40.0% |
| ! | CCACGTGATAGTGATAATGA+TGG | - | chr3.4:93566804-93566823 | MS.gene072928:CDS | 40.0% |
| ! | CTTGAGCACTGTAGAAACAT+TGG | - | chr3.4:93564020-93564039 | MS.gene072928:intron | 40.0% |
| ! | GACGAAGGATTTTCAACCTT+GGG | + | chr3.4:93564571-93564590 | None:intergenic | 40.0% |
| ! | GCTTGAATATCTTTGGAAGG+AGG | + | chr3.4:93566517-93566536 | None:intergenic | 40.0% |
| ! | TGGCAATTGATAGTCTTCCT+GGG | - | chr3.4:93566170-93566189 | MS.gene072928:CDS | 40.0% |
| !! | ATACCTACCTCGGTTTTATG+GGG | - | chr3.4:93566133-93566152 | MS.gene072928:CDS | 40.0% |
| !! | CGAGGCTTTATTGCAGATTA+TGG | - | chr3.4:93564840-93564859 | MS.gene072928:intron | 40.0% |
| !! | GATACCTACCTCGGTTTTAT+GGG | - | chr3.4:93566132-93566151 | MS.gene072928:CDS | 40.0% |
| !! | TACCAAGCTCTTTCTAGCTT+GGG | - | chr3.4:93564176-93564195 | MS.gene072928:CDS | 40.0% |
| !!! | GGCCAACCTTTGTTGATTTT+AGG | - | chr3.4:93564084-93564103 | MS.gene072928:intron | 40.0% |
| AAGTTTCAACTCTCCCCTGT+TGG | + | chr3.4:93566877-93566896 | None:intergenic | 45.0% | |
| AATTGCAATTCCTCCGACGA+AGG | + | chr3.4:93564586-93564605 | None:intergenic | 45.0% | |
| ACTCTGATATGTGGTCTCCT+TGG | - | chr3.4:93565521-93565540 | MS.gene072928:intron | 45.0% | |
| AGAGTTTGGCAGTTCTTAGG+AGG | - | chr3.4:93565591-93565610 | MS.gene072928:intron | 45.0% | |
| AGTGGACAAAACAGCCTTCT+AGG | + | chr3.4:93564936-93564955 | None:intergenic | 45.0% | |
| ATAAAGAGATGCAGGTTCCC+AGG | + | chr3.4:93564961-93564980 | None:intergenic | 45.0% | |
| ATCCATTGGTATACCGCCAT+TGG | + | chr3.4:93564609-93564628 | None:intergenic | 45.0% | |
| ATTGTTTGAACCACAGGGAC+TGG | - | chr3.4:93564528-93564547 | MS.gene072928:CDS | 45.0% | |
| ATTTGCAGCTGATCCGAAAG+AGG | - | chr3.4:93565707-93565726 | MS.gene072928:intron | 45.0% | |
| CAAACTGCAGGATATGTGGA+AGG | - | chr3.4:93565240-93565259 | MS.gene072928:intron | 45.0% | |
| CAGTACGTAGTATGTCACTC+AGG | - | chr3.4:93566597-93566616 | MS.gene072928:CDS | 45.0% | |
| CGGAGGAATTGCAATTCCAA+TGG | - | chr3.4:93564590-93564609 | MS.gene072928:CDS | 45.0% | |
| CTGTTGTTCCATGCATTCCT+TGG | + | chr3.4:93565746-93565765 | None:intergenic | 45.0% | |
| GACATACTACGTACTGCAGA+TGG | + | chr3.4:93566593-93566612 | None:intergenic | 45.0% | |
| GATGAGATGACAACCAACAG+GGG | - | chr3.4:93566861-93566880 | MS.gene072928:intron | 45.0% | |
| GGATGAGATGACAACCAACA+GGG | - | chr3.4:93566860-93566879 | MS.gene072928:intron | 45.0% | |
| GTACCATTCAAGACCATAGC+TGG | - | chr3.4:93566377-93566396 | MS.gene072928:CDS | 45.0% | |
| GTCCAGTGATAAAGAGATGC+AGG | + | chr3.4:93564969-93564988 | None:intergenic | 45.0% | |
| TAAAGAGATGCAGGTTCCCA+GGG | + | chr3.4:93564960-93564979 | None:intergenic | 45.0% | |
| TATCCCCATAAAACCGAGGT+AGG | + | chr3.4:93566139-93566158 | None:intergenic | 45.0% | |
| TCGGATCAGCTGCAAATCAA+TGG | + | chr3.4:93565704-93565723 | None:intergenic | 45.0% | |
| TCTTCCTGGGAATCAGTTCT+GGG | - | chr3.4:93566183-93566202 | MS.gene072928:CDS | 45.0% | |
| TCTTGAACAAGTCTCGTGTC+TGG | + | chr3.4:93565879-93565898 | None:intergenic | 45.0% | |
| TGATACCAAGGGTTGTGCAA+TGG | - | chr3.4:93565982-93566001 | MS.gene072928:intron | 45.0% | |
| TGGATGAGATGACAACCAAC+AGG | - | chr3.4:93566859-93566878 | MS.gene072928:intron | 45.0% | |
| TGGTACTGTCTCCACAAATG+AGG | + | chr3.4:93566363-93566382 | None:intergenic | 45.0% | |
| TGTGGAAGGACTCCATTTGA+AGG | + | chr3.4:93565554-93565573 | None:intergenic | 45.0% | |
| TGTTCTCCGAAAGCAATGAC+AGG | + | chr3.4:93563976-93563995 | None:intergenic | 45.0% | |
| TTCCAAGTGGTGTTCCTAGA+AGG | - | chr3.4:93564919-93564938 | MS.gene072928:intron | 45.0% | |
| TTCCAATGGCGGTATACCAA+TGG | - | chr3.4:93564604-93564623 | MS.gene072928:CDS | 45.0% | |
| TTTGCAGCTGATCCGAAAGA+GGG | - | chr3.4:93565708-93565727 | MS.gene072928:intron | 45.0% | |
| TTTGTATGCATGGGAGACTG+TGG | + | chr3.4:93565572-93565591 | None:intergenic | 45.0% | |
| ! | AATTACTTGTAACGCCGGCT+TGG | + | chr3.4:93566235-93566254 | None:intergenic | 45.0% |
| ! | CGACGAAGGATTTTCAACCT+TGG | + | chr3.4:93564572-93564591 | None:intergenic | 45.0% |
| ! | CGCTTTTCACAACCCTCTTT+CGG | + | chr3.4:93565723-93565742 | None:intergenic | 45.0% |
| ! | GGATACCTACCTCGGTTTTA+TGG | - | chr3.4:93566131-93566150 | MS.gene072928:CDS | 45.0% |
| ! | TTCCAGTGATGGTAGTGTTG+TGG | - | chr3.4:93564865-93564884 | MS.gene072928:intron | 45.0% |
| ! | TTGGCATCTACTGCCATTTG+TGG | - | chr3.4:93564039-93564058 | MS.gene072928:intron | 45.0% |
| !! | ATTACTTGTAACGCCGGCTT+GGG | + | chr3.4:93566234-93566253 | None:intergenic | 45.0% |
| !! | GTACCAAGCTCTTTCTAGCT+TGG | - | chr3.4:93564175-93564194 | MS.gene072928:CDS | 45.0% |
| AAGAGCTTGGTACCCAGTTG+AGG | + | chr3.4:93564168-93564187 | None:intergenic | 50.0% | |
| AGCCCAAGCTAGAAAGAGCT+TGG | + | chr3.4:93564181-93564200 | None:intergenic | 50.0% | |
| AGGTTCCATTGCACAACCCT+TGG | + | chr3.4:93565990-93566009 | None:intergenic | 50.0% | |
| CAATCAGGAGGGACTGCAAT+AGG | + | chr3.4:93566078-93566097 | None:intergenic | 50.0% | |
| CATTTGAAGGAGGAAGGCCA+AGG | + | chr3.4:93565541-93565560 | None:intergenic | 50.0% | |
| CTATTGCAGTCCCTCCTGAT+TGG | - | chr3.4:93566076-93566095 | MS.gene072928:CDS | 50.0% | |
| GAAAGCAATGACAGGAAGCG+CGG | + | chr3.4:93563968-93563987 | None:intergenic | 50.0% | |
| GCGCTTCCTGTCATTGCTTT+CGG | - | chr3.4:93563967-93563986 | MS.gene072928:intron | 50.0% | |
| GGAAGGACTCCATTTGAAGG+AGG | + | chr3.4:93565551-93565570 | None:intergenic | 50.0% | |
| GGACTCCATTTGAAGGAGGA+AGG | + | chr3.4:93565547-93565566 | None:intergenic | 50.0% | |
| GGTTGAAAATCCTTCGTCGG+AGG | - | chr3.4:93564573-93564592 | MS.gene072928:CDS | 50.0% | |
| GTCACATGGATACCGATAGG+TGG | - | chr3.4:93566443-93566462 | MS.gene072928:intron | 50.0% | |
| GTCCACAACACTACCATCAC+TGG | + | chr3.4:93564870-93564889 | None:intergenic | 50.0% | |
| GTCTTCCTGGGAATCAGTTC+TGG | - | chr3.4:93566182-93566201 | MS.gene072928:CDS | 50.0% | |
| TATGCATGGGAGACTGTGGA+AGG | + | chr3.4:93565568-93565587 | None:intergenic | 50.0% | |
| TCATAGCGTGGCTTCTCAGA+TGG | - | chr3.4:93565330-93565349 | MS.gene072928:intron | 50.0% | |
| TGTTCTGTTTCGGGGTCACA+TGG | - | chr3.4:93566429-93566448 | MS.gene072928:CDS | 50.0% | |
| TTCAATTCAGGGAGGCTACG+AGG | - | chr3.4:93564822-93564841 | MS.gene072928:intron | 50.0% | |
| TTTGGCAGTTCTTAGGAGGC+AGG | - | chr3.4:93565595-93565614 | MS.gene072928:intron | 50.0% | |
| ! | AGCCTTCTAGGAACACCACT+TGG | + | chr3.4:93564924-93564943 | None:intergenic | 50.0% |
| ! | CTTGGCCTTCCTCCTTCAAA+TGG | - | chr3.4:93565539-93565558 | MS.gene072928:intron | 50.0% |
| ! | CTTTCCCAGAACTGATTCCC+AGG | + | chr3.4:93566190-93566209 | None:intergenic | 50.0% |
| ! | GGTAGGCAGATGGCTTTTGA+AGG | + | chr3.4:93565375-93565394 | None:intergenic | 50.0% |
| ! | TTTGAACCACAGGGACTGGT+AGG | - | chr3.4:93564532-93564551 | MS.gene072928:CDS | 50.0% |
| !! | AAGCTCTTTCTAGCTTGGGC+TGG | - | chr3.4:93564180-93564199 | MS.gene072928:CDS | 50.0% |
| !! | CTGGGAATCAGTTCTGGGAA+AGG | - | chr3.4:93566188-93566207 | MS.gene072928:CDS | 50.0% |
| !! | GAAAAGCGCCAAGGAATGCA+TGG | - | chr3.4:93565735-93565754 | MS.gene072928:intron | 50.0% |
| !! | GCTGTTTTGTCCACTTCCCT+GGG | - | chr3.4:93564941-93564960 | MS.gene072928:CDS | 50.0% |
| !! | TCTTTCTAGCTTGGGCTGGT+TGG | - | chr3.4:93564184-93564203 | MS.gene072928:CDS | 50.0% |
| !! | TTACTTGTAACGCCGGCTTG+GGG | + | chr3.4:93566233-93566252 | None:intergenic | 50.0% |
| ACACCACTTGGAACGTCGTC+AGG | + | chr3.4:93564912-93564931 | None:intergenic | 55.0% | |
| ATGCCTGACGACGTTCCAAG+TGG | - | chr3.4:93564906-93564925 | MS.gene072928:intron | 55.0% | |
| CAGGAGGGACTGCAATAGGT+TGG | + | chr3.4:93566074-93566093 | None:intergenic | 55.0% | |
| GGGGTCACATGGATACCGAT+AGG | - | chr3.4:93566440-93566459 | MS.gene072928:intron | 55.0% | |
| TGGGTCTGCGCAATCTGTTC+CGG | - | chr3.4:93563821-93563840 | MS.gene072928:CDS | 55.0% | |
| !! | GAGGGTTGTGAAAAGCGCCA+AGG | - | chr3.4:93565726-93565745 | MS.gene072928:intron | 55.0% |
| !! | GGCTGTTTTGTCCACTTCCC+TGG | - | chr3.4:93564940-93564959 | MS.gene072928:CDS | 55.0% |
| AACTCGCCTACCAGTCCCTG+TGG | + | chr3.4:93564541-93564560 | None:intergenic | 60.0% | |
| AGGCGAGTTCAGCACTCCCA+AGG | - | chr3.4:93564552-93564571 | MS.gene072928:CDS | 60.0% | |
| GATGCAGGTTCCCAGGGAAG+TGG | + | chr3.4:93564954-93564973 | None:intergenic | 60.0% | |
| GCGCAATCTGTTCCGGCGTT+AGG | - | chr3.4:93563828-93563847 | MS.gene072928:CDS | 60.0% | |
| TCCTCTTCGTCACCCCAAGC+CGG | - | chr3.4:93566218-93566237 | MS.gene072928:intron | 60.0% | |
| !! | GCCGGCTTGGGGTGACGAAG+AGG | + | chr3.4:93566222-93566241 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93563755 | 93567013 | 93563755 | ID=MS.gene072928 |
| chr3.4 | mRNA | 93563755 | 93567013 | 93563755 | ID=MS.gene072928.t1;Parent=MS.gene072928 |
| chr3.4 | exon | 93566919 | 93567013 | 93566919 | ID=MS.gene072928.t1.exon1;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93566919 | 93567013 | 93566919 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93566563 | 93566838 | 93566563 | ID=MS.gene072928.t1.exon2;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93566563 | 93566838 | 93566563 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93566320 | 93566458 | 93566320 | ID=MS.gene072928.t1.exon3;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93566320 | 93566458 | 93566320 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93566059 | 93566224 | 93566059 | ID=MS.gene072928.t1.exon4;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93566059 | 93566224 | 93566059 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93565770 | 93565936 | 93565770 | ID=MS.gene072928.t1.exon5;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93565770 | 93565936 | 93565770 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93565345 | 93565518 | 93565345 | ID=MS.gene072928.t1.exon6;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93565345 | 93565518 | 93565345 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93565152 | 93565247 | 93565152 | ID=MS.gene072928.t1.exon7;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93565152 | 93565247 | 93565152 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93564937 | 93565053 | 93564937 | ID=MS.gene072928.t1.exon8;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93564937 | 93565053 | 93564937 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93564520 | 93564827 | 93564520 | ID=MS.gene072928.t1.exon9;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93564520 | 93564827 | 93564520 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93564149 | 93564428 | 93564149 | ID=MS.gene072928.t1.exon10;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93564149 | 93564428 | 93564149 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| chr3.4 | exon | 93563755 | 93563973 | 93563755 | ID=MS.gene072928.t1.exon11;Parent=MS.gene072928.t1 |
| chr3.4 | CDS | 93563755 | 93563973 | 93563755 | ID=cds.MS.gene072928.t1;Parent=MS.gene072928.t1 |
| Gene Sequence |
| Protein sequence |
