Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073556.t1 | XP_003626764.1 | 90.5 | 327 | 5 | 2 | 1 | 301 | 14 | 340 | 2.90E-164 | 587.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073556.t1 | Q9LTC0 | 56.0 | 323 | 113 | 4 | 3 | 301 | 31 | 348 | 7.8e-94 | 345.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073556.t1 | G7LCI9 | 90.5 | 327 | 5 | 2 | 1 | 301 | 14 | 340 | 2.1e-164 | 587.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049182 | MS.gene073556 | 0.838656 | 2.53E-57 | -1.69E-46 |
| MS.gene050379 | MS.gene073556 | 0.858397 | 8.47E-63 | -1.69E-46 |
| MS.gene051959 | MS.gene073556 | 0.837819 | 4.15E-57 | -1.69E-46 |
| MS.gene051960 | MS.gene073556 | 0.845904 | 3.03E-59 | -1.69E-46 |
| MS.gene052040 | MS.gene073556 | 0.819248 | 1.28E-52 | -1.69E-46 |
| MS.gene057001 | MS.gene073556 | 0.821806 | 3.32E-53 | -1.69E-46 |
| MS.gene057148 | MS.gene073556 | -0.812774 | 3.58E-51 | -1.69E-46 |
| MS.gene060237 | MS.gene073556 | 0.823209 | 1.57E-53 | -1.69E-46 |
| MS.gene060338 | MS.gene073556 | 0.801982 | 6.96E-49 | -1.69E-46 |
| MS.gene060522 | MS.gene073556 | 0.814028 | 1.90E-51 | -1.69E-46 |
| MS.gene060906 | MS.gene073556 | 0.818265 | 2.15E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAACCTTGTCAAGCTTAT+TGG | 0.094030 | 8.3:-80150465 | MS.gene073556:CDS |
| AAGCCAAAACTTTCTGATTT+TGG | 0.116071 | 8.3:-80149597 | MS.gene073556:CDS |
| CCCTTCTCCTCATAAAGTTT+TGG | 0.270204 | 8.3:+80151656 | None:intergenic |
| TAACTGAAGTTTCAGTTTCT+TGG | 0.278013 | 8.3:-80150501 | MS.gene073556:intron |
| GGATTTGGAAGTGTGTTTAA+AGG | 0.300617 | 8.3:-80151551 | MS.gene073556:CDS |
| GCTAGGGAGGGACCGGAAGC+TGG | 0.307118 | 8.3:-80149570 | MS.gene073556:CDS |
| TGTTGTTTATGTCAGGTAAT+GGG | 0.317576 | 8.3:-80148078 | MS.gene073556:intron |
| ATTCGTACACAAGTAATCTT+TGG | 0.325653 | 8.3:+80150412 | None:intergenic |
| AGTCCAAAATCAGAAAGTTT+TGG | 0.329045 | 8.3:+80149594 | None:intergenic |
| CCAATAAGCTTGACAAGGTT+TGG | 0.331239 | 8.3:+80150465 | None:intergenic |
| AAGATAGGAGAAGGTGGATT+TGG | 0.344267 | 8.3:-80151566 | MS.gene073556:CDS |
| TTCAATAGGCTTCTTAAGAT+AGG | 0.364787 | 8.3:-80151581 | MS.gene073556:CDS |
| TGAGCTTCTAAGCTTCGATT+TGG | 0.377411 | 8.3:+80150384 | None:intergenic |
| TTCTCTTGCTCTTCTAGCTC+AGG | 0.379718 | 8.3:+80151749 | None:intergenic |
| GTGCAACAAGTGATTTCAAT+AGG | 0.381630 | 8.3:-80151595 | MS.gene073556:CDS |
| GCTTAACAAGGATGCATTGC+AGG | 0.387031 | 8.3:-80151474 | MS.gene073556:intron |
| ATTAAACCTGTTGGTGGAAA+TGG | 0.411786 | 8.3:-80151524 | MS.gene073556:CDS |
| GTGCTATACGAAATGCTTAC+CGG | 0.417340 | 8.3:-80147976 | MS.gene073556:CDS |
| TTCATCTACCTCTTCACCTA+GGG | 0.423335 | 8.3:-80151684 | MS.gene073556:CDS |
| TGGCCTGTCTCAATGTAATC+TGG | 0.423526 | 8.3:+80148036 | None:intergenic |
| CTAGGGAGGGACCGGAAGCT+GGG | 0.424957 | 8.3:-80149569 | MS.gene073556:CDS |
| ATTGGATACTGTGCTGTAGA+TGG | 0.428794 | 8.3:-80150447 | MS.gene073556:CDS |
| GGATCACCATTTCCACCAAC+AGG | 0.429307 | 8.3:+80151518 | None:intergenic |
| GAATATTGTCCTTCAAGTCT+TGG | 0.432562 | 8.3:+80147850 | None:intergenic |
| AAGAGTGATGTGTGGAGTTT+CGG | 0.432784 | 8.3:-80148003 | MS.gene073556:CDS |
| ACATGGGTATCCCCAGCTTC+CGG | 0.441365 | 8.3:+80149558 | None:intergenic |
| AATCTTATGATCCTGTTCCT+TGG | 0.443398 | 8.3:-80150350 | MS.gene073556:CDS |
| CTATCTTAGTTGCCATCAAA+AGG | 0.459344 | 8.3:-80151496 | MS.gene073556:CDS |
| AGGAGAAGGGTCATAATTTG+AGG | 0.459825 | 8.3:-80151643 | MS.gene073556:CDS |
| CAGGCAATGATCCGCAAGCT+TGG | 0.463080 | 8.3:+80147804 | None:intergenic |
| CACTTACAGCAGTTGAAACA+TGG | 0.481942 | 8.3:+80149541 | None:intergenic |
| GGCGTTCATTGACAAGAAAC+CGG | 0.490120 | 8.3:-80147951 | MS.gene073556:CDS |
| GTTTCAGTTTCTTGGTGTTG+TGG | 0.491388 | 8.3:-80150493 | MS.gene073556:CDS |
| GTTCATCTACCTCTTCACCT+AGG | 0.495832 | 8.3:-80151685 | MS.gene073556:CDS |
| ACCAAAACTTTATGAGGAGA+AGG | 0.512522 | 8.3:-80151657 | MS.gene073556:CDS |
| GGAGAAGGGTCATAATTTGA+GGG | 0.515091 | 8.3:-80151642 | MS.gene073556:CDS |
| ATAATGGATCCAAGACTTGA+AGG | 0.515952 | 8.3:-80147859 | MS.gene073556:CDS |
| TGGACTCGCTAGGGAGGGAC+CGG | 0.517149 | 8.3:-80149577 | MS.gene073556:CDS |
| CGGAACAGAAACTATTGGAG+TGG | 0.520243 | 8.3:-80147921 | MS.gene073556:CDS |
| GGTTCGATTAAACCTGTTGG+TGG | 0.520335 | 8.3:-80151530 | MS.gene073556:CDS |
| GAAACTCCACACATCACTCT+TGG | 0.520420 | 8.3:+80148005 | None:intergenic |
| CATCACTCTTGGCGGTGAGA+TGG | 0.525282 | 8.3:+80148016 | None:intergenic |
| TCTTGTCAATGAACGCCTAC+CGG | 0.527029 | 8.3:+80147957 | None:intergenic |
| GGGTATACCAAAACTTTATG+AGG | 0.527439 | 8.3:-80151663 | MS.gene073556:CDS |
| GCATGAAGAATTAGAAGTCC+AGG | 0.532299 | 8.3:-80150277 | MS.gene073556:intron |
| GCTCCAGATTACATTGAGAC+AGG | 0.546259 | 8.3:-80148039 | MS.gene073556:CDS |
| AAAGGTTCGATTAAACCTGT+TGG | 0.549905 | 8.3:-80151533 | MS.gene073556:CDS |
| ATCCTGTTCCTTGGAAAACA+AGG | 0.550255 | 8.3:-80150341 | MS.gene073556:CDS |
| ATTGCACTCGGAGCAGCTCA+AGG | 0.555279 | 8.3:-80150312 | MS.gene073556:CDS |
| ACTCCACACATCACTCTTGG+CGG | 0.559361 | 8.3:+80148008 | None:intergenic |
| TATTGAAATCACTTGTTGCA+CGG | 0.561642 | 8.3:+80151597 | None:intergenic |
| GTTGTTTATGTCAGGTAATG+GGG | 0.563509 | 8.3:-80148077 | MS.gene073556:intron |
| TAGGGAGGGACCGGAAGCTG+GGG | 0.563974 | 8.3:-80149568 | MS.gene073556:CDS |
| TGGTATACCCCTAGGTGAAG+AGG | 0.572634 | 8.3:+80151676 | None:intergenic |
| CCAAAACTTTATGAGGAGAA+GGG | 0.578469 | 8.3:-80151656 | MS.gene073556:CDS |
| AGGCTTCTTAAGATAGGAGA+AGG | 0.590045 | 8.3:-80151575 | MS.gene073556:CDS |
| TGCCATCAAAAGGCTTAACA+AGG | 0.595915 | 8.3:-80151486 | MS.gene073556:CDS |
| CTTCTTAAGATAGGAGAAGG+TGG | 0.602567 | 8.3:-80151572 | MS.gene073556:CDS |
| TGTCAGGTAATGGGGACACA+TGG | 0.613419 | 8.3:-80148069 | MS.gene073556:intron |
| TCATCTACCTCTTCACCTAG+GGG | 0.632921 | 8.3:-80151683 | MS.gene073556:CDS |
| GGAACAGAAACTATTGGAGT+GGG | 0.639184 | 8.3:-80147920 | MS.gene073556:CDS |
| ACAAGGCTTGAAATTGCACT+CGG | 0.643426 | 8.3:-80150324 | MS.gene073556:CDS |
| ACTTACAGCAGTTGAAACAT+GGG | 0.651234 | 8.3:+80149542 | None:intergenic |
| TGTGCTGTAGATGGTGAGAG+AGG | 0.664829 | 8.3:-80150438 | MS.gene073556:CDS |
| GTGCTGTAGATGGTGAGAGA+GGG | 0.670705 | 8.3:-80150437 | MS.gene073556:CDS |
| AGTATCCAATAAGCTTGACA+AGG | 0.672904 | 8.3:+80150460 | None:intergenic |
| TGTCTCAATGTAATCTGGAG+CGG | 0.673474 | 8.3:+80148041 | None:intergenic |
| TCACCGCCAAGAGTGATGTG+TGG | 0.681210 | 8.3:-80148011 | MS.gene073556:CDS |
| TATACGAAATGCTTACCGGT+AGG | 0.684684 | 8.3:-80147972 | MS.gene073556:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATATATTATTTTTTT+TGG | - | chr8.3:80149536-80149555 | MS.gene073556:intron | 0.0% |
| !! | GATTGTATATTAAAATTAAT+AGG | + | chr8.3:80150778-80150797 | None:intergenic | 10.0% |
| !!! | AATAAAATTAAGTTTTATCT+TGG | - | chr8.3:80148233-80148252 | MS.gene073556:intron | 10.0% |
| !! | AAACATAAGAATTTGAATAT+TGG | - | chr8.3:80149426-80149445 | MS.gene073556:intron | 15.0% |
| !! | TTTATATAATTTACTAACGA+CGG | - | chr8.3:80149566-80149585 | MS.gene073556:CDS | 15.0% |
| !!! | TTTAAGTGTCATATTTTTAT+TGG | - | chr8.3:80151372-80151391 | MS.gene073556:intron | 15.0% |
| !! | AAACAAATGCAAAGTAAAAA+TGG | + | chr8.3:80150082-80150101 | None:intergenic | 20.0% |
| !! | AAATAACTAAGGTATAGATA+AGG | - | chr8.3:80150159-80150178 | MS.gene073556:intron | 20.0% |
| !! | ATTGTCAAAAACATAAATGA+AGG | - | chr8.3:80148880-80148899 | MS.gene073556:intron | 20.0% |
| !! | TACAACATAAACAAATGATT+TGG | - | chr8.3:80150515-80150534 | MS.gene073556:intron | 20.0% |
| !! | TATAAACAAAGAAACAAATG+TGG | + | chr8.3:80149010-80149029 | None:intergenic | 20.0% |
| !!! | ACTGTAATTTTTGAAAAAAG+AGG | - | chr8.3:80148732-80148751 | MS.gene073556:intron | 20.0% |
| !!! | ATCTATACCTTAGTTATTTT+TGG | + | chr8.3:80150158-80150177 | None:intergenic | 20.0% |
| !!! | TCTATACCTTAGTTATTTTT+GGG | + | chr8.3:80150157-80150176 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | - | chr8.3:80149745-80149764 | MS.gene073556:intron | 20.0% |
| !!! | TTTCTTTGATTCCATTATTT+TGG | - | chr8.3:80150825-80150844 | MS.gene073556:intron | 20.0% |
| ! | AAATTCATGCATTCAAATTG+TGG | + | chr8.3:80149485-80149504 | None:intergenic | 25.0% |
| ! | ACTAAGAATTAGAAACAACA+AGG | - | chr8.3:80148459-80148478 | MS.gene073556:intron | 25.0% |
| ! | AGACCTAATCATTTAAGAAT+TGG | - | chr8.3:80149375-80149394 | MS.gene073556:intron | 25.0% |
| ! | AGCATTAATATATACACTCT+TGG | - | chr8.3:80149600-80149619 | MS.gene073556:intron | 25.0% |
| ! | ATTCTTAAATGATTAGGTCT+AGG | + | chr8.3:80149375-80149394 | None:intergenic | 25.0% |
| ! | CAAAAAGTTTGACATGATAA+TGG | - | chr8.3:80151697-80151716 | MS.gene073556:CDS | 25.0% |
| ! | TAACATGCAGTAATTCTAAA+TGG | - | chr8.3:80151024-80151043 | MS.gene073556:intron | 25.0% |
| ! | TACTTTAGCATGTATCTATT+TGG | - | chr8.3:80151182-80151201 | MS.gene073556:intron | 25.0% |
| ! | TGAGATTCATGAAATTTCTT+AGG | - | chr8.3:80148123-80148142 | MS.gene073556:intron | 25.0% |
| ! | TTAGATTCATCACAATGAAT+CGG | + | chr8.3:80151229-80151248 | None:intergenic | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | + | chr8.3:80149720-80149739 | None:intergenic | 25.0% |
| ! | TTGATGTTCATATTGAATGA+TGG | - | chr8.3:80151311-80151330 | MS.gene073556:intron | 25.0% |
| ! | TTGTATTTCGAAGTCAAATT+TGG | - | chr8.3:80151078-80151097 | MS.gene073556:intron | 25.0% |
| !! | AATGGTAATGAATAAACATC+AGG | + | chr8.3:80150064-80150083 | None:intergenic | 25.0% |
| !! | ATTTTCTCAAATTATTAGCG+GGG | - | chr8.3:80149747-80149766 | MS.gene073556:intron | 25.0% |
| !! | GATTTTCTCAAATTATTAGC+GGG | - | chr8.3:80149746-80149765 | MS.gene073556:intron | 25.0% |
| !! | TACAATTATTTTCCTTGAAG+TGG | + | chr8.3:80151050-80151069 | None:intergenic | 25.0% |
| !! | TCGTTGGATAAAATGTTTTT+GGG | - | chr8.3:80150281-80150300 | MS.gene073556:CDS | 25.0% |
| !! | TTCGTTGGATAAAATGTTTT+TGG | - | chr8.3:80150280-80150299 | MS.gene073556:CDS | 25.0% |
| !!! | AAACATAAATGAAGGCATTA+AGG | - | chr8.3:80148888-80148907 | MS.gene073556:intron | 25.0% |
| !!! | CTATACCTTAGTTATTTTTG+GGG | + | chr8.3:80150156-80150175 | None:intergenic | 25.0% |
| !!! | CTTGGTTTTCATATTTTTAG+TGG | - | chr8.3:80149618-80149637 | MS.gene073556:intron | 25.0% |
| AAAAACGGAACAGAAACTAT+TGG | - | chr8.3:80151646-80151665 | MS.gene073556:CDS | 30.0% | |
| AAACAAGAATATCTAGACCT+AGG | + | chr8.3:80148694-80148713 | None:intergenic | 30.0% | |
| AAACCTTTCATATGATGTGT+TGG | - | chr8.3:80148398-80148417 | MS.gene073556:intron | 30.0% | |
| AACAATTGAGCTATGAAACA+CGG | + | chr8.3:80149817-80149836 | None:intergenic | 30.0% | |
| AACATTTGCAAGATTCTTGT+TGG | - | chr8.3:80150878-80150897 | MS.gene073556:intron | 30.0% | |
| AAGAATCTTGCAAACATGAA+TGG | + | chr8.3:80148945-80148964 | None:intergenic | 30.0% | |
| AGTATGTGCAATCTATATCA+AGG | + | chr8.3:80150469-80150488 | None:intergenic | 30.0% | |
| ATGATAGGTACCAGAAAAAT+TGG | + | chr8.3:80150256-80150275 | None:intergenic | 30.0% | |
| ATTCGTACACAAGTAATCTT+TGG | + | chr8.3:80149163-80149182 | None:intergenic | 30.0% | |
| CATTTAAGAATTGGTCCATA+CGG | - | chr8.3:80149384-80149403 | MS.gene073556:intron | 30.0% | |
| CTTCATAACAATTGAGTGAT+AGG | + | chr8.3:80149652-80149671 | None:intergenic | 30.0% | |
| GCAAGAGATTTCCAAAATAA+TGG | + | chr8.3:80150839-80150858 | None:intergenic | 30.0% | |
| GGACCAATTCTTAAATGATT+AGG | + | chr8.3:80149381-80149400 | None:intergenic | 30.0% | |
| GTAACTTATGTTGTACATGT+TGG | + | chr8.3:80150915-80150934 | None:intergenic | 30.0% | |
| TAACTGAAGTTTCAGTTTCT+TGG | - | chr8.3:80149071-80149090 | MS.gene073556:intron | 30.0% | |
| TAGATTCATCACAATGAATC+GGG | + | chr8.3:80151228-80151247 | None:intergenic | 30.0% | |
| TAGGTCTAGATATTCTTGTT+TGG | - | chr8.3:80148693-80148712 | MS.gene073556:intron | 30.0% | |
| TATCCAACGAAACTAATGAT+AGG | + | chr8.3:80150271-80150290 | None:intergenic | 30.0% | |
| TTAATGTTCAAATGTCTTGC+TGG | - | chr8.3:80149941-80149960 | MS.gene073556:intron | 30.0% | |
| TTCAATAGGCTTCTTAAGAT+AGG | - | chr8.3:80147991-80148010 | MS.gene073556:CDS | 30.0% | |
| ! | AAGCCAAAACTTTCTGATTT+TGG | - | chr8.3:80149975-80149994 | MS.gene073556:intron | 30.0% |
| ! | AATAGTTTCTGTTCCGTTTT+TGG | + | chr8.3:80151647-80151666 | None:intergenic | 30.0% |
| ! | AGTCCAAAATCAGAAAGTTT+TGG | + | chr8.3:80149981-80150000 | None:intergenic | 30.0% |
| ! | ATGTTGTTTATGTCAGGTAA+TGG | - | chr8.3:80151493-80151512 | MS.gene073556:CDS | 30.0% |
| ! | TATTGAAATCACTTGTTGCA+CGG | + | chr8.3:80147978-80147997 | None:intergenic | 30.0% |
| ! | TGATGGATAAGCTTAGAATT+TGG | - | chr8.3:80151328-80151347 | MS.gene073556:intron | 30.0% |
| ! | TGTTGTTTATGTCAGGTAAT+GGG | - | chr8.3:80151494-80151513 | MS.gene073556:CDS | 30.0% |
| ! | TTTATCGTTTTCTTCTTGTG+TGG | - | chr8.3:80150599-80150618 | MS.gene073556:intron | 30.0% |
| !! | AACTCTAAAGTATCATGAAG+GGG | + | chr8.3:80150446-80150465 | None:intergenic | 30.0% |
| !! | AGTTCAGTTTTGTATCGAAT+CGG | + | chr8.3:80151150-80151169 | None:intergenic | 30.0% |
| !! | ATGATTTGGAGTCTAGATTT+TGG | - | chr8.3:80150550-80150569 | MS.gene073556:intron | 30.0% |
| !! | ATGTCAAACTTTTTGCTATC+AGG | + | chr8.3:80151692-80151711 | None:intergenic | 30.0% |
| !! | CGTTGGATAAAATGTTTTTG+GGG | - | chr8.3:80150282-80150301 | MS.gene073556:CDS | 30.0% |
| !! | GAACTCTAAAGTATCATGAA+GGG | + | chr8.3:80150447-80150466 | None:intergenic | 30.0% |
| AAAGGTTCGATTAAACCTGT+TGG | - | chr8.3:80148039-80148058 | MS.gene073556:CDS | 35.0% | |
| AATCTTATGATCCTGTTCCT+TGG | - | chr8.3:80149222-80149241 | MS.gene073556:intron | 35.0% | |
| AATTCTAAATGGCCACTTCA+AGG | - | chr8.3:80151035-80151054 | MS.gene073556:intron | 35.0% | |
| ACCAAAACTTTATGAGGAGA+AGG | - | chr8.3:80147915-80147934 | MS.gene073556:CDS | 35.0% | |
| ACTTACAGCAGTTGAAACAT+GGG | + | chr8.3:80150033-80150052 | None:intergenic | 35.0% | |
| AGATTGCGTTAATTGTAACC+TGG | + | chr8.3:80149316-80149335 | None:intergenic | 35.0% | |
| AGGTATAGATAAGGTGAAAC+AGG | - | chr8.3:80150168-80150187 | MS.gene073556:intron | 35.0% | |
| AGTATCCAATAAGCTTGACA+AGG | + | chr8.3:80149115-80149134 | None:intergenic | 35.0% | |
| ATAGGTACCAGAAAAATTGG+AGG | + | chr8.3:80150253-80150272 | None:intergenic | 35.0% | |
| CACTCAATTGTTATGAAGCA+CGG | - | chr8.3:80149654-80149673 | MS.gene073556:intron | 35.0% | |
| CAGCTAATGTGCAATAAAGT+TGG | + | chr8.3:80150961-80150980 | None:intergenic | 35.0% | |
| CATAAACAACATGTTCGAGA+TGG | + | chr8.3:80151485-80151504 | None:intergenic | 35.0% | |
| CCAAAACTTTATGAGGAGAA+GGG | - | chr8.3:80147916-80147935 | MS.gene073556:CDS | 35.0% | |
| CTATCTTAGTTGCCATCAAA+AGG | - | chr8.3:80148076-80148095 | MS.gene073556:intron | 35.0% | |
| GAATATTGTCCTTCAAGTCT+TGG | + | chr8.3:80151725-80151744 | None:intergenic | 35.0% | |
| GGAGAAGAGATGAAATGATT+TGG | - | chr8.3:80150536-80150555 | MS.gene073556:intron | 35.0% | |
| GGGTATACCAAAACTTTATG+AGG | - | chr8.3:80147909-80147928 | MS.gene073556:CDS | 35.0% | |
| GGTATAGATAAGGTGAAACA+GGG | - | chr8.3:80150169-80150188 | MS.gene073556:intron | 35.0% | |
| GTGAACCCCAAAAATAACTA+AGG | - | chr8.3:80150148-80150167 | MS.gene073556:intron | 35.0% | |
| GTGCAACAAGTGATTTCAAT+AGG | - | chr8.3:80147977-80147996 | MS.gene073556:CDS | 35.0% | |
| GTTGTTTATGTCAGGTAATG+GGG | - | chr8.3:80151495-80151514 | MS.gene073556:CDS | 35.0% | |
| TACTAACGACGGTTATTTGA+AGG | - | chr8.3:80149577-80149596 | MS.gene073556:CDS | 35.0% | |
| TGTCTGACTGTACTAAGTTT+AGG | + | chr8.3:80151273-80151292 | None:intergenic | 35.0% | |
| TTGTGTATCTGTGTGATGTA+GGG | - | chr8.3:80149034-80149053 | MS.gene073556:intron | 35.0% | |
| ! | AATGTTTGAGACCATTGTGT+TGG | - | chr8.3:80150114-80150133 | MS.gene073556:intron | 35.0% |
| ! | ATCCTTGTTAAGCCTTTTGA+TGG | + | chr8.3:80148091-80148110 | None:intergenic | 35.0% |
| ! | ATTAAACCTGTTGGTGGAAA+TGG | - | chr8.3:80148048-80148067 | MS.gene073556:CDS | 35.0% |
| ! | CAAGAGAAACATCAGTTTTC+AGG | - | chr8.3:80147838-80147857 | MS.gene073556:CDS | 35.0% |
| ! | CAAGGGAATTGATTTAGGTA+GGG | + | chr8.3:80148669-80148688 | None:intergenic | 35.0% |
| ! | GGATTTGGAAGTGTGTTTAA+AGG | - | chr8.3:80148021-80148040 | MS.gene073556:CDS | 35.0% |
| ! | GTAATTATATGTGTCGGTGT+CGG | + | chr8.3:80149714-80149733 | None:intergenic | 35.0% |
| ! | GTACCTATCATTAGTTTCGT+TGG | - | chr8.3:80150265-80150284 | MS.gene073556:intron | 35.0% |
| ! | GTCAAATTTGGTCTGAAACA+CGG | - | chr8.3:80151090-80151109 | MS.gene073556:intron | 35.0% |
| ! | TCGAACATGTTGTTTATGTC+AGG | - | chr8.3:80151487-80151506 | MS.gene073556:CDS | 35.0% |
| ! | TCTGTTTCCTCCAATTTTTC+TGG | - | chr8.3:80150243-80150262 | MS.gene073556:intron | 35.0% |
| !! | ATAATGGATCCAAGACTTGA+AGG | - | chr8.3:80151713-80151732 | MS.gene073556:CDS | 35.0% |
| !! | CAAACTTTTTGCTATCAGGA+GGG | + | chr8.3:80151688-80151707 | None:intergenic | 35.0% |
| !! | CTTAATGTCATGTTCTGAAG+TGG | + | chr8.3:80150362-80150381 | None:intergenic | 35.0% |
| !! | CTTTTGATGGCAACTAAGAT+AGG | + | chr8.3:80148078-80148097 | None:intergenic | 35.0% |
| !! | GGAACTCTAAAGTATCATGA+AGG | + | chr8.3:80150448-80150467 | None:intergenic | 35.0% |
| !! | GTTCAGTTTTGTATCGAATC+GGG | + | chr8.3:80151149-80151168 | None:intergenic | 35.0% |
| !! | TAAAGTTTTGGTATACCCCT+AGG | + | chr8.3:80147907-80147926 | None:intergenic | 35.0% |
| !! | TCAAACTTTTTGCTATCAGG+AGG | + | chr8.3:80151689-80151708 | None:intergenic | 35.0% |
| !! | TCTAGATTTTGGCAGAGTTT+TGG | - | chr8.3:80150561-80150580 | MS.gene073556:intron | 35.0% |
| !!! | ATTTCAAGCCTTGTTTTCCA+AGG | + | chr8.3:80149242-80149261 | None:intergenic | 35.0% |
| !!! | GATAAAATGTTTTTGGGGTG+AGG | - | chr8.3:80150287-80150306 | MS.gene073556:CDS | 35.0% |
| !!! | GTAGTTTTGTTTTATCACGC+TGG | - | chr8.3:80150384-80150403 | MS.gene073556:CDS | 35.0% |
| AAATCAATTCCCTTGCACCT+AGG | - | chr8.3:80148674-80148693 | MS.gene073556:intron | 40.0% | |
| AAGAGTGATGTGTGGAGTTT+CGG | - | chr8.3:80151569-80151588 | MS.gene073556:CDS | 40.0% | |
| AATATCTAGACCTAGGTGCA+AGG | + | chr8.3:80148687-80148706 | None:intergenic | 40.0% | |
| ACAAGGCTTGAAATTGCACT+CGG | - | chr8.3:80149248-80149267 | MS.gene073556:intron | 40.0% | |
| ACAATGAATCGGGATTCAAG+AGG | + | chr8.3:80151218-80151237 | None:intergenic | 40.0% | |
| ACACGGTTGTCAGTATCTTA+AGG | - | chr8.3:80151107-80151126 | MS.gene073556:intron | 40.0% | |
| AGGAGAAGGGTCATAATTTG+AGG | - | chr8.3:80147929-80147948 | MS.gene073556:CDS | 40.0% | |
| AGGCTTCTTAAGATAGGAGA+AGG | - | chr8.3:80147997-80148016 | MS.gene073556:CDS | 40.0% | |
| ATATCTAGACCTAGGTGCAA+GGG | + | chr8.3:80148686-80148705 | None:intergenic | 40.0% | |
| ATCCTGTTCCTTGGAAAACA+AGG | - | chr8.3:80149231-80149250 | MS.gene073556:intron | 40.0% | |
| ATTAGGTCTAGGCATGTGAA+GGG | + | chr8.3:80149364-80149383 | None:intergenic | 40.0% | |
| ATTGGATACTGTGCTGTAGA+TGG | - | chr8.3:80149125-80149144 | MS.gene073556:intron | 40.0% | |
| CACAGGAAATTCCAACACAA+TGG | + | chr8.3:80150128-80150147 | None:intergenic | 40.0% | |
| CACTTACAGCAGTTGAAACA+TGG | + | chr8.3:80150034-80150053 | None:intergenic | 40.0% | |
| CATTGTGTTGGAATTTCCTG+TGG | - | chr8.3:80150126-80150145 | MS.gene073556:intron | 40.0% | |
| CCAAACCTTGTCAAGCTTAT+TGG | - | chr8.3:80149107-80149126 | MS.gene073556:intron | 40.0% | |
| CCAATAAGCTTGACAAGGTT+TGG | + | chr8.3:80149110-80149129 | None:intergenic | 40.0% | |
| CCACCAACACATCATATGAA+AGG | + | chr8.3:80148404-80148423 | None:intergenic | 40.0% | |
| CCTTTCATATGATGTGTTGG+TGG | - | chr8.3:80148401-80148420 | MS.gene073556:intron | 40.0% | |
| CTTCAGTTAACCACTGCTTA+TGG | + | chr8.3:80149060-80149079 | None:intergenic | 40.0% | |
| CTTCTTAAGATAGGAGAAGG+TGG | - | chr8.3:80148000-80148019 | MS.gene073556:CDS | 40.0% | |
| CTTGTGTATCTGTGTGATGT+AGG | - | chr8.3:80149033-80149052 | MS.gene073556:intron | 40.0% | |
| GATCAACAACAATAGCTGCA+CGG | + | chr8.3:80148548-80148567 | None:intergenic | 40.0% | |
| GCATGAAGAATTAGAAGTCC+AGG | - | chr8.3:80149295-80149314 | MS.gene073556:intron | 40.0% | |
| GGAACAGAAACTATTGGAGT+GGG | - | chr8.3:80151652-80151671 | MS.gene073556:CDS | 40.0% | |
| GGAGAAGGGTCATAATTTGA+GGG | - | chr8.3:80147930-80147949 | MS.gene073556:CDS | 40.0% | |
| GTGCTATACGAAATGCTTAC+CGG | - | chr8.3:80151596-80151615 | MS.gene073556:CDS | 40.0% | |
| GTTCACAAACACGAGTTCAA+TGG | + | chr8.3:80148758-80148777 | None:intergenic | 40.0% | |
| GTTGATACAAGCCTGAAGTT+TGG | - | chr8.3:80150191-80150210 | MS.gene073556:intron | 40.0% | |
| TAGTTGCACATTACACCGTA+TGG | + | chr8.3:80149402-80149421 | None:intergenic | 40.0% | |
| TATACGAAATGCTTACCGGT+AGG | - | chr8.3:80151600-80151619 | MS.gene073556:CDS | 40.0% | |
| TCAAAAGATGCGTCTCTTCA+TGG | + | chr8.3:80150800-80150819 | None:intergenic | 40.0% | |
| TCTCAAATTATTAGCGGGGT+TGG | - | chr8.3:80149751-80149770 | MS.gene073556:intron | 40.0% | |
| TGAGCTTCTAAGCTTCGATT+TGG | + | chr8.3:80149191-80149210 | None:intergenic | 40.0% | |
| TGCCATCAAAAGGCTTAACA+AGG | - | chr8.3:80148086-80148105 | MS.gene073556:intron | 40.0% | |
| TGTCTCAATGTAATCTGGAG+CGG | + | chr8.3:80151534-80151553 | None:intergenic | 40.0% | |
| TTCATCTACCTCTTCACCTA+GGG | - | chr8.3:80147888-80147907 | MS.gene073556:CDS | 40.0% | |
| TTGAGCTATGAAACACGGTA+CGG | + | chr8.3:80149812-80149831 | None:intergenic | 40.0% | |
| ! | AAGATAGGAGAAGGTGGATT+TGG | - | chr8.3:80148006-80148025 | MS.gene073556:CDS | 40.0% |
| ! | AGGTGCAAGGGAATTGATTT+AGG | + | chr8.3:80148674-80148693 | None:intergenic | 40.0% |
| ! | ATTGATTTAGGTAGGGCTCA+AGG | + | chr8.3:80148662-80148681 | None:intergenic | 40.0% |
| ! | CCCTTCTCCTCATAAAGTTT+TGG | + | chr8.3:80147919-80147938 | None:intergenic | 40.0% |
| ! | GCAAGGGAATTGATTTAGGT+AGG | + | chr8.3:80148670-80148689 | None:intergenic | 40.0% |
| ! | TTCTGATTTTGGACTCGCTA+GGG | - | chr8.3:80149986-80150005 | MS.gene073556:intron | 40.0% |
| ! | TTTCTGATTTTGGACTCGCT+AGG | - | chr8.3:80149985-80150004 | MS.gene073556:intron | 40.0% |
| !! | GTTTCAGTTTCTTGGTGTTG+TGG | - | chr8.3:80149079-80149098 | MS.gene073556:intron | 40.0% |
| !!! | TTATTTTTGGGGTTCACCAC+AGG | + | chr8.3:80150145-80150164 | None:intergenic | 40.0% |
| AACAAGGCTGATGATCCTCA+GGG | - | chr8.3:80148475-80148494 | MS.gene073556:intron | 45.0% | |
| AACAATAGCTGCACGGAGTA+CGG | + | chr8.3:80148541-80148560 | None:intergenic | 45.0% | |
| ATACAAGCCTGAAGTTTGGC+TGG | - | chr8.3:80150195-80150214 | MS.gene073556:intron | 45.0% | |
| CGGAACAGAAACTATTGGAG+TGG | - | chr8.3:80151651-80151670 | MS.gene073556:CDS | 45.0% | |
| GAAACTCCACACATCACTCT+TGG | + | chr8.3:80151570-80151589 | None:intergenic | 45.0% | |
| GACAAGAAACCGGCCAAAAA+CGG | - | chr8.3:80151631-80151650 | MS.gene073556:CDS | 45.0% | |
| GATTAGGTCTAGGCATGTGA+AGG | + | chr8.3:80149365-80149384 | None:intergenic | 45.0% | |
| GCTCCAGATTACATTGAGAC+AGG | - | chr8.3:80151533-80151552 | MS.gene073556:CDS | 45.0% | |
| GCTTAACAAGGATGCATTGC+AGG | - | chr8.3:80148098-80148117 | MS.gene073556:intron | 45.0% | |
| GGCGTTCATTGACAAGAAAC+CGG | - | chr8.3:80151621-80151640 | MS.gene073556:CDS | 45.0% | |
| GGTTCGATTAAACCTGTTGG+TGG | - | chr8.3:80148042-80148061 | MS.gene073556:CDS | 45.0% | |
| GTTCATCTACCTCTTCACCT+AGG | - | chr8.3:80147887-80147906 | MS.gene073556:CDS | 45.0% | |
| TAATGCAGATAGAGACCCTG+AGG | + | chr8.3:80148509-80148528 | None:intergenic | 45.0% | |
| TATGAAACACGGTACGGACA+CGG | + | chr8.3:80149806-80149825 | None:intergenic | 45.0% | |
| TCATCTACCTCTTCACCTAG+GGG | - | chr8.3:80147889-80147908 | MS.gene073556:CDS | 45.0% | |
| TCTTGTCAATGAACGCCTAC+CGG | + | chr8.3:80151618-80151637 | None:intergenic | 45.0% | |
| TGCATCTGTGTGTAGGCAAT+TGG | - | chr8.3:80148793-80148812 | MS.gene073556:intron | 45.0% | |
| TGGCCTGTCTCAATGTAATC+TGG | + | chr8.3:80151539-80151558 | None:intergenic | 45.0% | |
| TTGTCTCTGCATCTGTGTGT+AGG | - | chr8.3:80148786-80148805 | MS.gene073556:intron | 45.0% | |
| ! | GATTTTTCGCGCTGCGTTAA+GGG | + | chr8.3:80151747-80151766 | None:intergenic | 45.0% |
| !! | TCACGCTGGTTTCGTTAAAC+TGG | - | chr8.3:80150398-80150417 | MS.gene073556:CDS | 45.0% |
| !! | TTCTCTTGCTCTTCTAGCTC+AGG | + | chr8.3:80147826-80147845 | None:intergenic | 45.0% |
| !!! | AGCCTTGTTTTCCAAGGAAC+AGG | + | chr8.3:80149236-80149255 | None:intergenic | 45.0% |
| !!! | GTTTCTGTTCCGTTTTTGGC+CGG | + | chr8.3:80151643-80151662 | None:intergenic | 45.0% |
| ACTCCACACATCACTCTTGG+CGG | + | chr8.3:80151567-80151586 | None:intergenic | 50.0% | |
| CAACAAGGCTGATGATCCTC+AGG | - | chr8.3:80148474-80148493 | MS.gene073556:intron | 50.0% | |
| CAGAGACAAAGGAAGCGACT+TGG | - | chr8.3:80148627-80148646 | MS.gene073556:intron | 50.0% | |
| CTCAGGGTTGTTGATCCTCA+GGG | - | chr8.3:80148491-80148510 | MS.gene073556:intron | 50.0% | |
| CTTGATGCCAGCCAAACTTC+AGG | + | chr8.3:80150205-80150224 | None:intergenic | 50.0% | |
| GCGAAAAATCGCCAAGCTTG+CGG | - | chr8.3:80151757-80151776 | MS.gene073556:CDS | 50.0% | |
| GGATCACCATTTCCACCAAC+AGG | + | chr8.3:80148057-80148076 | None:intergenic | 50.0% | |
| GTGCTGTAGATGGTGAGAGA+GGG | - | chr8.3:80149135-80149154 | MS.gene073556:intron | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | chr8.3:80149665-80149684 | MS.gene073556:intron | 50.0% | |
| TGATGTAGGGCCATAAGCAG+TGG | - | chr8.3:80149047-80149066 | MS.gene073556:intron | 50.0% | |
| TGGTATACCCCTAGGTGAAG+AGG | + | chr8.3:80147899-80147918 | None:intergenic | 50.0% | |
| TGTGCTGTAGATGGTGAGAG+AGG | - | chr8.3:80149134-80149153 | MS.gene073556:intron | 50.0% | |
| ! | CGATTTTTCGCGCTGCGTTA+AGG | + | chr8.3:80151748-80151767 | None:intergenic | 50.0% |
| ! | GATTTTGGACTCGCTAGGGA+GGG | - | chr8.3:80149990-80150009 | MS.gene073556:intron | 50.0% |
| ! | TGATTTTGGACTCGCTAGGG+AGG | - | chr8.3:80149989-80150008 | MS.gene073556:intron | 50.0% |
| !! | TGTCAGGTAATGGGGACACA+TGG | - | chr8.3:80151503-80151522 | MS.gene073556:CDS | 50.0% |
| !!! | AGGGTCTTTTGGCTTCCTCA+GGG | - | chr8.3:80148580-80148599 | MS.gene073556:intron | 50.0% |
| AAAAGACCCTCAGGCTCTGC+AGG | + | chr8.3:80148570-80148589 | None:intergenic | 55.0% | |
| ACATGGGTATCCCCAGCTTC+CGG | + | chr8.3:80150017-80150036 | None:intergenic | 55.0% | |
| ATTGCACTCGGAGCAGCTCA+AGG | - | chr8.3:80149260-80149279 | MS.gene073556:intron | 55.0% | |
| CAGGCAATGATCCGCAAGCT+TGG | + | chr8.3:80151771-80151790 | None:intergenic | 55.0% | |
| CATCACTCTTGGCGGTGAGA+TGG | + | chr8.3:80151559-80151578 | None:intergenic | 55.0% | |
| CCTCAGGGTTGTTGATCCTC+AGG | - | chr8.3:80148490-80148509 | MS.gene073556:intron | 55.0% | |
| CCTGAGGATCAACAACCCTG+AGG | + | chr8.3:80148493-80148512 | None:intergenic | 55.0% | |
| GAGGAAGCCAAAAGACCCTC+AGG | + | chr8.3:80148579-80148598 | None:intergenic | 55.0% | |
| GGTGTGAAGCTAGCTGCGTT+CGG | - | chr8.3:80148604-80148623 | MS.gene073556:intron | 55.0% | |
| GTCAGTGTCCGTGTCGTGTT+CGG | - | chr8.3:80149777-80149796 | MS.gene073556:intron | 55.0% | |
| GTTGATCCTGCAGAGCCTGA+GGG | - | chr8.3:80148561-80148580 | MS.gene073556:intron | 55.0% | |
| TCACCGCCAAGAGTGATGTG+TGG | - | chr8.3:80151561-80151580 | MS.gene073556:CDS | 55.0% | |
| TGTTGATCCTGCAGAGCCTG+AGG | - | chr8.3:80148560-80148579 | MS.gene073556:intron | 55.0% | |
| ! | AGGAAGCGACTTGGACATCG+CGG | - | chr8.3:80148636-80148655 | MS.gene073556:intron | 55.0% |
| ! | TGCAGAGCCTGAGGGTCTTT+TGG | - | chr8.3:80148569-80148588 | MS.gene073556:intron | 55.0% |
| !!! | GAGGGTCTTTTGGCTTCCTC+AGG | - | chr8.3:80148579-80148598 | MS.gene073556:intron | 55.0% |
| !!! | GTCTTTTGGCTTCCTCAGGG+CGG | - | chr8.3:80148583-80148602 | MS.gene073556:intron | 55.0% |
| CACGGACACCGAACACGACA+CGG | + | chr8.3:80149788-80149807 | None:intergenic | 60.0% | |
| GCTGCGTTCGGCAGAGACAA+AGG | - | chr8.3:80148616-80148635 | MS.gene073556:intron | 60.0% | |
| ! | CCTCGGATTAGACCGTGTCC+CGG | - | chr8.3:80149682-80149701 | MS.gene073556:intron | 60.0% |
| CCGGGACACGGTCTAATCCG+AGG | + | chr8.3:80149685-80149704 | None:intergenic | 65.0% | |
| CTAGGGAGGGACCGGAAGCT+GGG | - | chr8.3:80150003-80150022 | MS.gene073556:intron | 65.0% | |
| TAGGGAGGGACCGGAAGCTG+GGG | - | chr8.3:80150004-80150023 | MS.gene073556:intron | 65.0% | |
| TGGACTCGCTAGGGAGGGAC+CGG | - | chr8.3:80149995-80150014 | MS.gene073556:intron | 65.0% | |
| TGTCGGACACGACCGGGACA+CGG | + | chr8.3:80149697-80149716 | None:intergenic | 65.0% | |
| ! | GCTAGCTTCACACCGCCCTG+AGG | + | chr8.3:80148598-80148617 | None:intergenic | 65.0% |
| !! | GTGTCGGTGTCGGACACGAC+CGG | + | chr8.3:80149704-80149723 | None:intergenic | 65.0% |
| !! | TGTCGGTGTCGGACACGACC+GGG | + | chr8.3:80149703-80149722 | None:intergenic | 65.0% |
| GCTAGGGAGGGACCGGAAGC+TGG | - | chr8.3:80150002-80150021 | MS.gene073556:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 80147803 | 80151791 | 80147803 | ID=MS.gene073556 |
| chr8.3 | mRNA | 80147803 | 80151791 | 80147803 | ID=MS.gene073556.t1;Parent=MS.gene073556 |
| chr8.3 | exon | 80151475 | 80151791 | 80151475 | ID=MS.gene073556.t1.exon1;Parent=MS.gene073556.t1 |
| chr8.3 | CDS | 80151475 | 80151791 | 80151475 | ID=cds.MS.gene073556.t1;Parent=MS.gene073556.t1 |
| chr8.3 | exon | 80150278 | 80150514 | 80150278 | ID=MS.gene073556.t1.exon2;Parent=MS.gene073556.t1 |
| chr8.3 | CDS | 80150278 | 80150514 | 80150278 | ID=cds.MS.gene073556.t1;Parent=MS.gene073556.t1 |
| chr8.3 | exon | 80149548 | 80149616 | 80149548 | ID=MS.gene073556.t1.exon3;Parent=MS.gene073556.t1 |
| chr8.3 | CDS | 80149548 | 80149616 | 80149548 | ID=cds.MS.gene073556.t1;Parent=MS.gene073556.t1 |
| chr8.3 | exon | 80147803 | 80148085 | 80147803 | ID=MS.gene073556.t1.exon4;Parent=MS.gene073556.t1 |
| chr8.3 | CDS | 80147803 | 80148085 | 80147803 | ID=cds.MS.gene073556.t1;Parent=MS.gene073556.t1 |
| Gene Sequence |
| Protein sequence |
