AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene07382

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07382.t1 MTR_1g075900 97.015 201 6 0 1 201 1 201 7.85e-143 412
MS.gene07382.t1 MTR_1g442840 79.703 202 40 1 1 201 1 202 1.37e-116 345
MS.gene07382.t1 MTR_1g069785 58.416 202 53 3 1 201 1 172 8.76e-79 247
MS.gene07382.t1 MTR_1g442840 87.640 89 11 0 113 201 1 89 1.53e-53 179
MS.gene07382.t1 MTR_5g080720 44.697 132 70 2 71 201 104 233 9.78e-34 127
MS.gene07382.t1 MTR_5g080720 44.697 132 70 2 71 201 104 233 1.40e-33 127
MS.gene07382.t1 MTR_1g051055 36.458 192 101 4 18 201 18 196 1.00e-32 124
MS.gene07382.t1 MTR_3g068990 46.903 113 58 1 89 201 151 261 1.23e-30 119
MS.gene07382.t1 MTR_1g029730 48.673 113 53 3 91 201 141 250 5.95e-30 117
MS.gene07382.t1 MTR_8g100075 48.214 112 54 1 89 200 96 203 6.73e-28 110
MS.gene07382.t1 MTR_4g098890 35.323 201 116 5 2 200 3 191 1.27e-27 110
MS.gene07382.t1 MTR_8g071280 34.694 196 93 4 11 201 11 176 6.71e-27 108
MS.gene07382.t1 MTR_5g083150 53.000 100 41 3 102 200 103 197 1.54e-26 107
MS.gene07382.t1 MTR_8g055840 36.318 201 108 5 6 201 5 190 1.89e-26 106
MS.gene07382.t1 MTR_5g040360 36.585 205 111 7 1 201 1 190 2.38e-26 106
MS.gene07382.t1 MTR_3g040370 34.653 202 115 4 2 200 3 190 5.09e-26 105
MS.gene07382.t1 MTR_7g076170 47.222 108 53 1 92 199 102 205 1.45e-25 104
MS.gene07382.t1 MTR_5g021100 50.980 102 44 3 99 199 328 424 4.67e-25 102
MS.gene07382.t1 MTR_3g088790 46.535 101 50 2 99 199 232 328 2.39e-24 100
MS.gene07382.t1 MTR_3g096480 37.267 161 84 5 41 199 218 363 5.10e-24 100
MS.gene07382.t1 MTR_8g093880 47.959 98 47 2 102 199 300 393 9.06e-24 99.4
MS.gene07382.t1 MTR_7g076150 41.593 113 62 1 89 201 73 181 1.09e-23 99.0
MS.gene07382.t1 MTR_0019s0120 43.243 111 59 1 91 201 105 211 1.31e-23 98.6
MS.gene07382.t1 MTR_0019s0120 43.243 111 59 1 91 201 105 211 1.62e-23 98.6
MS.gene07382.t1 MTR_8g432680 40.909 110 61 1 91 200 105 210 1.91e-23 98.2
MS.gene07382.t1 MTR_1g101370 46.018 113 52 3 90 199 91 197 2.29e-23 97.8
MS.gene07382.t1 MTR_8g432620 41.667 108 59 1 94 201 91 194 5.27e-23 97.1
MS.gene07382.t1 MTR_5g026930 32.821 195 95 5 10 199 13 176 8.32e-23 96.3
MS.gene07382.t1 MTR_5g026930 32.821 195 95 5 10 199 13 176 1.05e-22 95.9
MS.gene07382.t1 MTR_8g076650 40.769 130 70 4 71 199 358 481 2.44e-21 92.4
MS.gene07382.t1 MTR_7g006060 40.367 109 61 1 91 199 43 147 3.29e-21 91.7
MS.gene07382.t1 MTR_3g071530 48.113 106 49 3 100 205 153 252 1.86e-20 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene07382.t1 AT1G04430 74.257 202 43 3 1 201 1 194 9.27e-108 323
MS.gene07382.t1 AT1G04430 74.257 202 43 3 1 201 1 194 9.27e-108 323
MS.gene07382.t1 AT1G04430 74.257 202 43 3 1 201 1 194 9.27e-108 323
MS.gene07382.t1 AT3G23300 67.164 201 51 5 3 201 2 189 1.12e-83 260
MS.gene07382.t1 AT3G23300 67.164 201 51 5 3 201 2 189 1.12e-83 260
MS.gene07382.t1 AT4G14360 68.844 199 48 5 3 201 2 186 2.10e-82 257
MS.gene07382.t1 AT4G14360 68.844 199 48 5 3 201 2 186 2.10e-82 257
MS.gene07382.t1 AT5G14430 58.564 181 62 4 42 215 28 202 3.32e-67 217
MS.gene07382.t1 AT5G14430 56.906 181 65 4 42 215 28 202 4.11e-65 212
MS.gene07382.t1 AT5G04060 51.754 114 54 1 87 199 78 191 6.19e-35 130
MS.gene07382.t1 AT3G10200 51.304 115 55 1 86 199 66 180 7.53e-35 130
MS.gene07382.t1 AT3G10200 51.304 115 55 1 86 199 66 180 7.66e-35 130
MS.gene07382.t1 AT2G39750 42.963 135 73 2 68 201 154 285 7.75e-31 119
MS.gene07382.t1 AT1G33170 48.276 116 56 1 85 200 104 215 3.95e-29 114
MS.gene07382.t1 AT4G10440 46.032 126 63 2 76 200 77 198 7.63e-29 113
MS.gene07382.t1 AT1G77260 38.356 146 82 3 60 201 108 249 8.01e-29 113
MS.gene07382.t1 AT5G06050 39.716 141 71 3 68 201 124 257 9.68e-29 113
MS.gene07382.t1 AT4G19120 37.931 145 86 1 55 199 34 174 2.05e-27 109
MS.gene07382.t1 AT4G19120 37.931 145 86 1 55 199 34 174 2.05e-27 109
MS.gene07382.t1 AT4G19120 37.931 145 86 1 55 199 34 174 2.28e-27 108
MS.gene07382.t1 AT1G31850 31.188 202 114 5 1 199 1 180 5.10e-26 105
MS.gene07382.t1 AT1G31850 31.188 202 114 5 1 199 1 180 5.10e-26 105
MS.gene07382.t1 AT1G31850 31.188 202 114 5 1 199 1 180 5.10e-26 105
MS.gene07382.t1 AT1G31850 31.188 202 114 5 1 199 1 180 5.10e-26 105
MS.gene07382.t1 AT2G45750 45.946 111 56 1 90 200 86 192 5.80e-26 105
MS.gene07382.t1 AT3G51070 40.719 167 85 7 37 199 320 476 1.12e-25 104
MS.gene07382.t1 AT3G51070 40.719 167 85 7 37 199 320 476 1.24e-25 104
MS.gene07382.t1 AT1G26850 36.453 203 104 6 4 201 10 192 1.34e-25 103
MS.gene07382.t1 AT1G26850 36.453 203 104 6 4 201 10 192 1.86e-25 103
MS.gene07382.t1 AT1G26850 36.453 203 104 6 4 201 10 192 1.86e-25 103
MS.gene07382.t1 AT5G64030 48.980 98 46 2 102 199 310 403 5.74e-25 102
MS.gene07382.t1 AT2G40280 50.505 99 43 3 102 199 92 185 2.24e-24 100
MS.gene07382.t1 AT4G00740 31.868 182 107 4 20 201 23 187 6.15e-24 99.8
MS.gene07382.t1 AT4G00740 31.868 182 107 4 20 201 23 187 6.15e-24 99.8
MS.gene07382.t1 AT2G34300 50.505 99 43 3 102 199 252 345 7.21e-24 99.8
MS.gene07382.t1 AT2G34300 50.505 99 43 3 102 199 252 345 7.21e-24 99.8
MS.gene07382.t1 AT2G34300 50.505 99 43 3 102 199 252 345 7.21e-24 99.8
MS.gene07382.t1 AT1G29470 51.515 99 42 3 102 199 252 345 1.06e-23 99.0
MS.gene07382.t1 AT1G29470 51.515 99 42 3 102 199 252 345 1.06e-23 99.0
MS.gene07382.t1 AT3G56080 50.505 99 43 3 102 199 116 209 1.36e-23 98.6
MS.gene07382.t1 AT3G56080 50.505 99 43 3 102 199 116 209 1.44e-23 98.6
MS.gene07382.t1 AT4G18030 44.248 113 59 1 88 200 82 190 2.24e-23 98.2
MS.gene07382.t1 AT4G00750 30.500 200 123 5 3 200 16 201 2.70e-22 95.1
MS.gene07382.t1 AT2G43200 41.379 116 58 4 91 203 91 199 1.09e-21 93.2
MS.gene07382.t1 AT2G43200 41.379 116 58 4 91 203 91 199 1.09e-21 93.2

Find 50 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAACTCGGGTCATCATATT+TGG 0.159182 1.2:+64537721 MS.gene07382:CDS
CTATCAACTGCGGATGAAAT+TGG 0.231856 1.2:+64538324 MS.gene07382:CDS
ATGAATCTTCATCAAGTTTC+GGG 0.251904 1.2:+64537774 MS.gene07382:CDS
TAGAATATGGCAAATCATTA+AGG 0.302605 1.2:+64537699 MS.gene07382:CDS
AGACTTACAGGGAAACTCTT+TGG 0.313437 1.2:-64537824 None:intergenic
GGTTCATCTGCTCTAGAATA+TGG 0.329914 1.2:+64537686 MS.gene07382:CDS
GATGAATCTTCATCAAGTTT+CGG 0.344747 1.2:+64537773 MS.gene07382:CDS
GTGTATGGTGGATCCATCTT+TGG 0.355339 1.2:+64537650 MS.gene07382:CDS
ATTGGTTTATTGTATGTGTA+TGG 0.380007 1.2:+64537635 MS.gene07382:CDS
GGTGAAAAGATAGCGTTTCC+TGG 0.413514 1.2:+64538940 MS.gene07382:CDS
CAGAACTGGATGGTTGAAAA+AGG 0.415347 1.2:+64538919 MS.gene07382:CDS
TGTTCTCTTTCAAGCGCAAC+TGG 0.423724 1.2:+64539552 MS.gene07382:CDS
AGCTTTACCTTGTATCCTGC+TGG 0.439990 1.2:-64538421 None:intergenic
ACCTTGTATCCTGCTGGAGG+TGG 0.447322 1.2:-64538415 None:intergenic
ATCAAGTTTCGGGCAGGTTG+AGG 0.449725 1.2:+64537784 MS.gene07382:CDS
AAAATTTGATAACTTAAGCT+AGG 0.460580 1.2:-64539595 None:intergenic
AAGATAGCGTTTCCTGGAGG+TGG 0.467053 1.2:+64538946 MS.gene07382:CDS
AAACTCGGGTCATCATATTT+GGG 0.469992 1.2:+64537722 MS.gene07382:CDS
CAATTGTAGCGCCTTTCTGC+AGG 0.474236 1.2:-64538385 None:intergenic
GGTTTATTGTATGTGTATGG+TGG 0.491063 1.2:+64537638 MS.gene07382:CDS
GGTTTGTGATGATCGACATT+CGG 0.499002 1.2:+64538270 MS.gene07382:intron
GGCAAATCATTAAGGAAACT+CGG 0.503496 1.2:+64537707 MS.gene07382:CDS
TCATCCGCAGTTGATAGATA+AGG 0.506793 1.2:-64538318 None:intergenic
TGCTTCCATCTGTATTGTGA+CGG 0.510917 1.2:+64537607 MS.gene07382:CDS
ATCTTTGGTTCTCAAAGTAG+TGG 0.519421 1.2:+64537665 MS.gene07382:CDS
TGAAAATGAGTCCCACCTCC+AGG 0.523764 1.2:-64538958 None:intergenic
TGCTTGATTCCACCTCCAGC+AGG 0.528228 1.2:+64538406 MS.gene07382:CDS
TCCACCTCCAGCAGGATACA+AGG 0.532112 1.2:+64538414 MS.gene07382:CDS
ATCTTCATCAAGTTTCGGGC+AGG 0.532250 1.2:+64537778 MS.gene07382:CDS
TATTGCAGGTCCCTGTTAAG+TGG 0.534088 1.2:+64538827 MS.gene07382:intron
ACTACTTTGAGAACCAAAGA+TGG 0.550404 1.2:-64537663 None:intergenic
CATGTGCAAGGTGAGTATGC+GGG 0.554830 1.2:-64538885 None:intergenic
GACATTGTCCTCCTGCAGAA+AGG 0.568006 1.2:+64538374 MS.gene07382:CDS
CGGGTCATCATATTTGGGTG+CGG 0.570443 1.2:+64537727 MS.gene07382:CDS
GCAAATCATTAAGGAAACTC+GGG 0.578611 1.2:+64537708 MS.gene07382:CDS
GAAATTGGACTTGTCTGTGA+TGG 0.590350 1.2:+64538339 MS.gene07382:CDS
TTTACCTTGTATCCTGCTGG+AGG 0.594171 1.2:-64538418 None:intergenic
AAGTTTCGGGCAGGTTGAGG+AGG 0.598476 1.2:+64537787 MS.gene07382:CDS
TCATGTGCAAGGTGAGTATG+CGG 0.601983 1.2:-64538886 None:intergenic
TTGTAGCGCCTTTCTGCAGG+AGG 0.605032 1.2:-64538382 None:intergenic
AGATAGCGTTTCCTGGAGGT+GGG 0.614943 1.2:+64538947 MS.gene07382:CDS
ATAAGGTGTCTATCTAAGCA+AGG 0.619479 1.2:-64538301 None:intergenic
TTTCAGCTAATAAATGTCGA+GGG 0.621039 1.2:+64537550 None:intergenic
GTTTCAGCTAATAAATGTCG+AGG 0.624315 1.2:+64537549 None:intergenic
GGTGCGGATGATGACAATGA+TGG 0.639680 1.2:+64537743 MS.gene07382:CDS
TTCAGCTAATAAATGTCGAG+GGG 0.645373 1.2:+64537551 None:intergenic
AAAATCTGACCAGAACTGGA+TGG 0.669903 1.2:+64538909 MS.gene07382:CDS
GACACCTTATCTATCAACTG+CGG 0.711012 1.2:+64538314 MS.gene07382:CDS
TCAGCTAATAAATGTCGAGG+GGG 0.718230 1.2:+64537552 None:intergenic
GAAAAGATAGCGTTTCCTGG+AGG 0.737306 1.2:+64538943 MS.gene07382:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTGTAAATGATAAAATAT+TGG - chr1.2:64539304-64539323 None:intergenic 15.0%
!! TGCTTAAAATTAAATGTAAA+TGG + chr1.2:64538036-64538055 MS.gene07382:intron 15.0%
!! AAATAATACATATGTATCAG+AGG - chr1.2:64538781-64538800 None:intergenic 20.0%
!! AAGATTAAAAATTGATCCAA+GGG - chr1.2:64538517-64538536 None:intergenic 20.0%
!! ATGTTGTATTTAAAAATGGT+GGG - chr1.2:64539164-64539183 None:intergenic 20.0%
!! GAAGATGTTGTATTTAAAAA+TGG - chr1.2:64539168-64539187 None:intergenic 20.0%
!! TAAGATTAAAAATTGATCCA+AGG - chr1.2:64538518-64538537 None:intergenic 20.0%
!!! AAAGTAATATTGTTGACTTA+AGG - chr1.2:64539437-64539456 None:intergenic 20.0%
!!! CTATTTTTGCTTTTGATATT+TGG + chr1.2:64537879-64537898 MS.gene07382:intron 20.0%
!!! TATAATGTTTCTTCTTTTGA+AGG + chr1.2:64538249-64538268 MS.gene07382:intron 20.0%
! AATACGACATTGTTAATAGA+AGG - chr1.2:64539411-64539430 None:intergenic 25.0%
! ACTCCTAATCTTGAATAAAT+AGG - chr1.2:64538614-64538633 None:intergenic 25.0%
! AGATTAAAAATTGATCCAAG+GGG - chr1.2:64538516-64538535 None:intergenic 25.0%
! ATACGACATTGTTAATAGAA+GGG - chr1.2:64539410-64539429 None:intergenic 25.0%
! ATTGTTTCCTGTATAATATG+TGG + chr1.2:64538153-64538172 MS.gene07382:intron 25.0%
! GAAATATGTAAACTAATCCT+AGG - chr1.2:64538559-64538578 None:intergenic 25.0%
! GATGTTGTATTTAAAAATGG+TGG - chr1.2:64539165-64539184 None:intergenic 25.0%
! GTATAAGCTATTTATCCAAA+CGG + chr1.2:64539119-64539138 MS.gene07382:intron 25.0%
! GTTCCTATTTATTCAAGATT+AGG + chr1.2:64538608-64538627 MS.gene07382:intron 25.0%
! TAGAATATGGCAAATCATTA+AGG + chr1.2:64537699-64537718 MS.gene07382:CDS 25.0%
! TATAAGCTATTTATCCAAAC+GGG + chr1.2:64539120-64539139 MS.gene07382:intron 25.0%
! TATCAAAAGCAAAAATAGAG+TGG - chr1.2:64537877-64537896 None:intergenic 25.0%
! TTGTTAGAATAAGTAGAAGT+TGG + chr1.2:64538635-64538654 MS.gene07382:intron 25.0%
!! AATCACATTTGTTGAAGTTA+TGG - chr1.2:64538748-64538767 None:intergenic 25.0%
!! ACTGATTTAGTTACTATATG+TGG - chr1.2:64538096-64538115 None:intergenic 25.0%
!! ATCACATTTGTTGAAGTTAT+GGG - chr1.2:64538747-64538766 None:intergenic 25.0%
!! ATTGGTTTATTGTATGTGTA+TGG + chr1.2:64537635-64537654 MS.gene07382:CDS 25.0%
!!! AGTTATGGGTTTTAGTTAAA+AGG - chr1.2:64538733-64538752 None:intergenic 25.0%
AATCTTACAAAGAGACTTAC+AGG - chr1.2:64537839-64537858 None:intergenic 30.0%
ATAAGCTATTTATCCAAACG+GGG + chr1.2:64539121-64539140 MS.gene07382:intron 30.0%
ATCTTACAAAGAGACTTACA+GGG - chr1.2:64537838-64537857 None:intergenic 30.0%
ATGAATCTTCATCAAGTTTC+GGG + chr1.2:64537774-64537793 MS.gene07382:CDS 30.0%
ATTGTTAATAGAAGGGCAAT+TGG - chr1.2:64539403-64539422 None:intergenic 30.0%
GATGAATCTTCATCAAGTTT+CGG + chr1.2:64537773-64537792 MS.gene07382:CDS 30.0%
! TAAGCTAGGATACTTCTTTT+TGG - chr1.2:64539584-64539603 None:intergenic 30.0%
! TGTATTGTGACGGTTTTTAT+TGG + chr1.2:64537617-64537636 MS.gene07382:CDS 30.0%
! TTCAGATGCAGCAATATTTT+TGG + chr1.2:64538200-64538219 MS.gene07382:intron 30.0%
!!! GTAGAGTTTTGTTCAATTTC+AGG + chr1.2:64537945-64537964 MS.gene07382:intron 30.0%
!!! TATGGGTTTTAGTTAAAAGG+AGG - chr1.2:64538730-64538749 None:intergenic 30.0%
AAAAACCGTCACAATACAGA+TGG - chr1.2:64537615-64537634 None:intergenic 35.0%
AAAACTCTACACAAGAGACT+TGG - chr1.2:64537935-64537954 None:intergenic 35.0%
AAACTCGGGTCATCATATTT+GGG + chr1.2:64537722-64537741 MS.gene07382:CDS 35.0%
AACTATTGTACACATGAGCT+TGG - chr1.2:64537974-64537993 None:intergenic 35.0%
AATTTCTAAGCTTATCCCCT+TGG + chr1.2:64538498-64538517 MS.gene07382:intron 35.0%
ACTTGACATTCATGCATTCA+TGG - chr1.2:64539203-64539222 None:intergenic 35.0%
ATAGAGTTACTGAGACATAC+AGG + chr1.2:64539486-64539505 MS.gene07382:intron 35.0%
ATGAAAAATCTGACCAGAAC+TGG + chr1.2:64538905-64538924 MS.gene07382:CDS 35.0%
ATTGTGGCCACATATTATAC+AGG - chr1.2:64538163-64538182 None:intergenic 35.0%
CTTCTAACAACATCAACTCT+TGG - chr1.2:64538450-64538469 None:intergenic 35.0%
GATGTGCATAAACTTGATTG+TGG - chr1.2:64538179-64538198 None:intergenic 35.0%
GCAAATCATTAAGGAAACTC+GGG + chr1.2:64537708-64537727 MS.gene07382:CDS 35.0%
GGCAAATCATTAAGGAAACT+CGG + chr1.2:64537707-64537726 MS.gene07382:CDS 35.0%
GGTGGGATAATTGATGAATT+AGG - chr1.2:64539147-64539166 None:intergenic 35.0%
GGTTTATTGTATGTGTATGG+TGG + chr1.2:64537638-64537657 MS.gene07382:CDS 35.0%
! ACTACTTTGAGAACCAAAGA+TGG - chr1.2:64537666-64537685 None:intergenic 35.0%
! ATAAGGTGTCTATCTAAGCA+AGG - chr1.2:64538304-64538323 None:intergenic 35.0%
! CTAGGATACTTCTTTTTGGA+TGG - chr1.2:64539580-64539599 None:intergenic 35.0%
! CTCTAGTCAATAAGCTCTAA+TGG + chr1.2:64539085-64539104 MS.gene07382:intron 35.0%
! TCTTTGTAAGATTAGCCACA+AGG + chr1.2:64537846-64537865 MS.gene07382:intron 35.0%
!! ATCTTTGGTTCTCAAAGTAG+TGG + chr1.2:64537665-64537684 MS.gene07382:CDS 35.0%
AAAATCTGACCAGAACTGGA+TGG + chr1.2:64538909-64538928 MS.gene07382:CDS 40.0%
AATAGAGTGGATGTTCCTTG+TGG - chr1.2:64537864-64537883 None:intergenic 40.0%
AGACTTACAGGGAAACTCTT+TGG - chr1.2:64537827-64537846 None:intergenic 40.0%
AGCATCTCAGATTATCTCCT+AGG + chr1.2:64538539-64538558 MS.gene07382:intron 40.0%
ATTAGGACATGGCAAATGCT+CGG - chr1.2:64538808-64538827 None:intergenic 40.0%
CAGAACTGGATGGTTGAAAA+AGG + chr1.2:64538919-64538938 MS.gene07382:CDS 40.0%
CTATCAACTGCGGATGAAAT+TGG + chr1.2:64538324-64538343 MS.gene07382:CDS 40.0%
GAAACTCGGGTCATCATATT+TGG + chr1.2:64537721-64537740 MS.gene07382:CDS 40.0%
GAAATTGGACTTGTCTGTGA+TGG + chr1.2:64538339-64538358 MS.gene07382:CDS 40.0%
GACACCTTATCTATCAACTG+CGG + chr1.2:64538314-64538333 MS.gene07382:CDS 40.0%
GGTTTGTGATGATCGACATT+CGG + chr1.2:64538270-64538289 MS.gene07382:intron 40.0%
GTGGTTGTATTGTTGAGTGA+TGG - chr1.2:64539371-64539390 None:intergenic 40.0%
TAACAGGGACCTGCAATATT+AGG - chr1.2:64538825-64538844 None:intergenic 40.0%
TGCTTCCATCTGTATTGTGA+CGG + chr1.2:64537607-64537626 MS.gene07382:CDS 40.0%
TTGCCATGTCCTAATATTGC+AGG + chr1.2:64538813-64538832 MS.gene07382:intron 40.0%
! GGTCAGATTTTTCATGTGCA+AGG - chr1.2:64538900-64538919 None:intergenic 40.0%
! GGTGGGACTCATTTTCATTA+TGG + chr1.2:64538964-64538983 MS.gene07382:CDS 40.0%
!! GGTTCATCTGCTCTAGAATA+TGG + chr1.2:64537686-64537705 MS.gene07382:CDS 40.0%
!! TCATCCGCAGTTGATAGATA+AGG - chr1.2:64538321-64538340 None:intergenic 40.0%
!! TGCTTTTTGGCCACTTAACA+GGG - chr1.2:64538840-64538859 None:intergenic 40.0%
!!! CTTTTTCAACCATCCAGTTC+TGG - chr1.2:64538921-64538940 None:intergenic 40.0%
AGCTTTACCTTGTATCCTGC+TGG - chr1.2:64538424-64538443 None:intergenic 45.0%
ATCTTCATCAAGTTTCGGGC+AGG + chr1.2:64537778-64537797 MS.gene07382:CDS 45.0%
CAAAAAGCAGAGATGAGGTG+TGG + chr1.2:64538851-64538870 MS.gene07382:CDS 45.0%
GAAAAGATAGCGTTTCCTGG+AGG + chr1.2:64538943-64538962 MS.gene07382:CDS 45.0%
GGACCTGCAATATTAGGACA+TGG - chr1.2:64538819-64538838 None:intergenic 45.0%
GGGCAATTGGATGTAAGTAG+TGG - chr1.2:64539390-64539409 None:intergenic 45.0%
GGTGAAAAGATAGCGTTTCC+TGG + chr1.2:64538940-64538959 MS.gene07382:CDS 45.0%
TATTGCAGGTCCCTGTTAAG+TGG + chr1.2:64538827-64538846 MS.gene07382:intron 45.0%
TCATGTGCAAGGTGAGTATG+CGG - chr1.2:64538889-64538908 None:intergenic 45.0%
TGTTCTCTTTCAAGCGCAAC+TGG + chr1.2:64539552-64539571 MS.gene07382:CDS 45.0%
TTGATGAATTAGGCCCCGTT+TGG - chr1.2:64539137-64539156 None:intergenic 45.0%
TTTACCTTGTATCCTGCTGG+AGG - chr1.2:64538421-64538440 None:intergenic 45.0%
!! CACACCTCATCTCTGCTTTT+TGG - chr1.2:64538853-64538872 None:intergenic 45.0%
!! GTGTATGGTGGATCCATCTT+TGG + chr1.2:64537650-64537669 MS.gene07382:CDS 45.0%
!!! CTGCTTTTTGGCCACTTAAC+AGG - chr1.2:64538841-64538860 None:intergenic 45.0%
AAGATAGCGTTTCCTGGAGG+TGG + chr1.2:64538946-64538965 MS.gene07382:CDS 50.0%
AGATAGCGTTTCCTGGAGGT+GGG + chr1.2:64538947-64538966 MS.gene07382:CDS 50.0%
ATCAAGTTTCGGGCAGGTTG+AGG + chr1.2:64537784-64537803 MS.gene07382:CDS 50.0%
CAATTGTAGCGCCTTTCTGC+AGG - chr1.2:64538388-64538407 None:intergenic 50.0%
CATGTGCAAGGTGAGTATGC+GGG - chr1.2:64538888-64538907 None:intergenic 50.0%
CGGGTCATCATATTTGGGTG+CGG + chr1.2:64537727-64537746 MS.gene07382:CDS 50.0%
GACATTGTCCTCCTGCAGAA+AGG + chr1.2:64538374-64538393 MS.gene07382:CDS 50.0%
GGTGCGGATGATGACAATGA+TGG + chr1.2:64537743-64537762 MS.gene07382:CDS 50.0%
GTGGCCAAAAAGCAGAGATG+AGG + chr1.2:64538846-64538865 MS.gene07382:CDS 50.0%
TGAAAATGAGTCCCACCTCC+AGG - chr1.2:64538961-64538980 None:intergenic 50.0%
ACCTTGTATCCTGCTGGAGG+TGG - chr1.2:64538418-64538437 None:intergenic 55.0%
ATGTCGAGGGGGAGATCTGA+TGG + chr1.2:64537563-64537582 MS.gene07382:CDS 55.0%
TCCACCTCCAGCAGGATACA+AGG + chr1.2:64538414-64538433 MS.gene07382:CDS 55.0%
TGCTTGATTCCACCTCCAGC+AGG + chr1.2:64538406-64538425 MS.gene07382:CDS 55.0%
TGTCGAGGGGGAGATCTGAT+GGG + chr1.2:64537564-64537583 MS.gene07382:CDS 55.0%
TTGTAGCGCCTTTCTGCAGG+AGG - chr1.2:64538385-64538404 None:intergenic 55.0%
! AAGTTTCGGGCAGGTTGAGG+AGG + chr1.2:64537787-64537806 MS.gene07382:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 64537563 64539604 64537563 ID=MS.gene07382
chr1.2 mRNA 64537563 64539604 64537563 ID=MS.gene07382.t1;Parent=MS.gene07382
chr1.2 exon 64537563 64537838 64537563 ID=MS.gene07382.t1.exon1;Parent=MS.gene07382.t1
chr1.2 CDS 64537563 64537838 64537563 ID=cds.MS.gene07382.t1;Parent=MS.gene07382.t1
chr1.2 exon 64538271 64538435 64538271 ID=MS.gene07382.t1.exon2;Parent=MS.gene07382.t1
chr1.2 CDS 64538271 64538435 64538271 ID=cds.MS.gene07382.t1;Parent=MS.gene07382.t1
chr1.2 exon 64538835 64538995 64538835 ID=MS.gene07382.t1.exon3;Parent=MS.gene07382.t1
chr1.2 CDS 64538835 64538995 64538835 ID=cds.MS.gene07382.t1;Parent=MS.gene07382.t1
chr1.2 exon 64539541 64539604 64539541 ID=MS.gene07382.t1.exon4;Parent=MS.gene07382.t1
chr1.2 CDS 64539541 64539604 64539541 ID=cds.MS.gene07382.t1;Parent=MS.gene07382.t1
Gene Sequence

>MS.gene07382

ATGTCGAGGGGGAGATCTGATGGGTCACAAAAGAAGCGCATAGTTGCTTCCATCTGTATTGTGACGGTTTTTATTGGTTTATTGTATGTGTATGGTGGATCCATCTTTGGTTCTCAAAGTAGTGGTTCATCTGCTCTAGAATATGGCAAATCATTAAGGAAACTCGGGTCATCATATTTGGGTGCGGATGATGACAATGATGGCAAGCAAGATGAATCTTCATCAAGTTTCGGGCAGGTTGAGGAGGACGACAATATTGTTCCAAAGAGTTTCCCTGTAAGTCTCTTTGTAAGATTAGCCACAAGGAACATCCACTCTATTTTTGCTTTTGATATTTGGTTTTATCAGTCTTTGCATTAATAAAAATAACCAAGTCTCTTGTGTAGAGTTTTGTTCAATTTCAGGTTGCCAAGCTCATGTGTACAATAGTTCAATAAATAAATAAATAAATAATAGATGCAAGTTATATAAGATGCTTAAAATTAAATGTAAATGGAAAATTACAAGTTTTGAAAAAACTGATTTAGTGTCCACATATAGTAACTAAATCAGTCAACAAGACTCATGTTTGCATAATGAAAATAAAATTAATTGTTTCCTGTATAATATGTGGCCACAATCAAGTTTATGCACATCATTCAGATGCAGCAATATTTTTGGCTCATTATCAATCATGTGATATTATTTATAATGTTTCTTCTTTTGAAGGTTTGTGATGATCGACATTCGGAGTTGATTCCTTGCTTAGATAGACACCTTATCTATCAACTGCGGATGAAATTGGACTTGTCTGTGATGGAACACTATGAGAGACATTGTCCTCCTGCAGAAAGGCGCTACAATTGCTTGATTCCACCTCCAGCAGGATACAAGGTAAAGCTTTGCCAAGAGTTGATGTTGTTAGAAGATAAAATAATATATTGATATTATGTCAGAATTTCTAAGCTTATCCCCTTGGATCAATTTTTAATCTTAGAGCATCTCAGATTATCTCCTAGGATTAGTTTACATATTTCTTAATTATTATCATGATTTCTTTTCTTACGTTCCTATTTATTCAAGATTAGGAGTCTTGTTAGAATAAGTAGAAGTTGGTGCTTAGTCTTTTGTATTAAGTTAGCATCATGTTATTATTAATACATTCAAAGTTCTTATTATTTCTTTCCTCCTTTTAACTAAAACCCATAACTTCAACAAATGTGATTTTCAATGTATCCTCTGATACATATGTATTATTTTAATCCGAGCATTTGCCATGTCCTAATATTGCAGGTCCCTGTTAAGTGGCCAAAAAGCAGAGATGAGGTGTGGAAAGCAAATATCCCGCATACTCACCTTGCACATGAAAAATCTGACCAGAACTGGATGGTTGAAAAAGGTGAAAAGATAGCGTTTCCTGGAGGTGGGACTCATTTTCATTATGGAGCTGATAAGTACATTGCATCAATATTTATGCAAGTACTTTTTAGTGTACATATTCAAACATAAAGAGCTTATTGAGTACAAGTGTTTCTGATGTAAGCTCTAGTCAATAAGCTCTAATGGTATAAGCATCTGTATAAGCTATTTATCCAAACGGGGCCTAATTCATCAATTATCCCACCATTTTTAAATACAACATCTTCAAATAGACTCGACCATGAATGCATGAATGTCAAGTAGTTACTCATTGATACACATCATTTTATGACTCAACATTACACATCTTTAAATAACTCATCATTAGATAACACATCGTCCAATATTTTATCATTTACACATCATTAAATAATAAATCAATTACATCATTAATTAACACGCACTCACCATCACTCAACAATACAACCACTACTTACATCCAATTGCCCTTCTATTAACAATGTCGTATTCTTCCTTAAGTCAACAATATTACTTTAAAAATTGTGTCATAGAGTAGATGAGTTCATAGAGTTACTGAGACATACAGGTAAATGTTAAAATTATGAAATTAAATATGCAGAAACTACTATATGTTCTCTTTCAAGCGCAACTGGTACCATCCAAAAAGAAGTATCCTAGCTTAA
Protein sequence

>MS.gene07382.t1

MSRGRSDGSQKKRIVASICIVTVFIGLLYVYGGSIFGSQSSGSSALEYGKSLRKLGSSYLGADDDNDGKQDESSSSFGQVEEDDNIVPKSFPVCDDRHSELIPCLDRHLIYQLRMKLDLSVMEHYERHCPPAERRYNCLIPPPAGYKVPVKWPKSRDEVWKANIPHTHLAHEKSDQNWMVEKGEKIAFPGGGTHFHYGADKNYYMFSFKRNWYHPKRSILA