Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073884.t1 | XP_024632154.1 | 96.2 | 292 | 11 | 0 | 1 | 292 | 1 | 292 | 1.10E-139 | 506.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073884.t1 | Q6NM73 | 60.3 | 302 | 101 | 4 | 9 | 292 | 7 | 307 | 6.4e-85 | 315.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073884.t1 | A0A396JQZ9 | 96.2 | 292 | 11 | 0 | 1 | 292 | 1 | 292 | 7.6e-140 | 506.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049341 | MS.gene073884 | 0.803089 | 4.12E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene073884 | 0.801784 | 7.65E-49 | -1.69E-46 |
| MS.gene050586 | MS.gene073884 | 0.808196 | 3.49E-50 | -1.69E-46 |
| MS.gene050778 | MS.gene073884 | 0.827185 | 1.80E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene073884 | 0.823785 | 1.15E-53 | -1.69E-46 |
| MS.gene052133 | MS.gene073884 | 0.805196 | 1.50E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene073884 | 0.828945 | 6.78E-55 | -1.69E-46 |
| MS.gene052732 | MS.gene073884 | 0.805351 | 1.39E-49 | -1.69E-46 |
| MS.gene053132 | MS.gene073884 | 0.815347 | 9.69E-52 | -1.69E-46 |
| MS.gene053437 | MS.gene073884 | 0.836824 | 7.46E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene073884 | 0.806591 | 7.64E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene073884 | 0.815604 | 8.49E-52 | -1.69E-46 |
| MS.gene056432 | MS.gene073884 | 0.804817 | 1.80E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene073884 | 0.808145 | 3.58E-50 | -1.69E-46 |
| MS.gene058851 | MS.gene073884 | 0.831366 | 1.74E-55 | -1.69E-46 |
| MS.gene058906 | MS.gene073884 | 0.84079 | 7.03E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene073884 | 0.801055 | 1.08E-48 | -1.69E-46 |
| MS.gene060619 | MS.gene073884 | 0.810835 | 9.46E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073884.t1 | MTR_1g044580 | 96.552 | 290 | 10 | 0 | 1 | 290 | 1 | 290 | 0.0 | 574 |
| MS.gene073884.t1 | MTR_1g073320 | 73.835 | 279 | 61 | 2 | 24 | 290 | 20 | 298 | 2.46e-136 | 389 |
| MS.gene073884.t1 | MTR_7g098410 | 46.996 | 283 | 138 | 5 | 10 | 290 | 10 | 282 | 5.50e-82 | 249 |
| MS.gene073884.t1 | MTR_1g080350 | 36.986 | 292 | 168 | 7 | 9 | 292 | 12 | 295 | 1.60e-58 | 189 |
| MS.gene073884.t1 | MTR_8g104990 | 33.333 | 267 | 171 | 6 | 28 | 290 | 18 | 281 | 9.38e-36 | 130 |
| MS.gene073884.t1 | MTR_5g078030 | 31.271 | 291 | 175 | 9 | 5 | 289 | 5 | 276 | 2.36e-29 | 113 |
| MS.gene073884.t1 | MTR_3g065370 | 29.032 | 279 | 181 | 7 | 12 | 287 | 8 | 272 | 2.80e-26 | 104 |
| MS.gene073884.t1 | MTR_1g044560 | 43.689 | 103 | 58 | 0 | 142 | 244 | 24 | 126 | 1.55e-20 | 85.5 |
| MS.gene073884.t1 | MTR_7g052020 | 26.291 | 213 | 147 | 3 | 40 | 243 | 28 | 239 | 2.98e-17 | 79.7 |
| MS.gene073884.t1 | MTR_1g104890 | 25.191 | 262 | 171 | 8 | 40 | 281 | 45 | 301 | 2.85e-15 | 75.1 |
| MS.gene073884.t1 | MTR_1g105655 | 23.551 | 276 | 182 | 5 | 39 | 292 | 40 | 308 | 4.41e-15 | 75.9 |
| MS.gene073884.t1 | MTR_1g104890 | 25.483 | 259 | 176 | 7 | 40 | 282 | 45 | 302 | 9.28e-15 | 74.3 |
| MS.gene073884.t1 | MTR_1g104890 | 25.095 | 263 | 172 | 8 | 40 | 282 | 45 | 302 | 1.59e-14 | 73.9 |
| MS.gene073884.t1 | MTR_1g104890 | 25.095 | 263 | 172 | 8 | 40 | 282 | 45 | 302 | 1.85e-14 | 73.9 |
| MS.gene073884.t1 | MTR_5g005480 | 27.103 | 214 | 141 | 4 | 40 | 239 | 35 | 247 | 3.65e-14 | 72.8 |
| MS.gene073884.t1 | MTR_6g055960 | 25.424 | 236 | 150 | 4 | 49 | 258 | 36 | 271 | 4.13e-14 | 72.8 |
| MS.gene073884.t1 | MTR_6g463400 | 25.121 | 207 | 139 | 5 | 48 | 239 | 42 | 247 | 4.49e-13 | 69.7 |
| MS.gene073884.t1 | MTR_5g068260 | 26.238 | 202 | 135 | 5 | 49 | 238 | 42 | 241 | 7.29e-13 | 68.9 |
| MS.gene073884.t1 | MTR_2g010710 | 23.504 | 234 | 165 | 5 | 13 | 238 | 11 | 238 | 8.63e-12 | 64.7 |
| MS.gene073884.t1 | MTR_2g010730 | 25.993 | 277 | 174 | 10 | 13 | 266 | 11 | 279 | 9.70e-12 | 64.7 |
| MS.gene073884.t1 | MTR_6g463830 | 24.528 | 265 | 165 | 9 | 25 | 258 | 18 | 278 | 1.22e-11 | 65.5 |
| MS.gene073884.t1 | MTR_1g105755 | 24.066 | 241 | 129 | 6 | 49 | 262 | 46 | 259 | 2.15e-11 | 64.7 |
| MS.gene073884.t1 | MTR_1g105820 | 23.451 | 226 | 152 | 5 | 49 | 262 | 46 | 262 | 2.90e-11 | 64.3 |
| MS.gene073884.t1 | MTR_2g010720 | 25.210 | 238 | 155 | 7 | 13 | 238 | 75 | 301 | 3.42e-11 | 63.5 |
| MS.gene073884.t1 | MTR_1g105650 | 26.407 | 231 | 133 | 8 | 34 | 239 | 33 | 251 | 3.76e-11 | 63.9 |
| MS.gene073884.t1 | MTR_6g463660 | 23.913 | 184 | 126 | 3 | 70 | 239 | 65 | 248 | 5.51e-11 | 63.2 |
| MS.gene073884.t1 | MTR_6g057680 | 23.913 | 184 | 126 | 3 | 70 | 239 | 65 | 248 | 5.51e-11 | 63.2 |
| MS.gene073884.t1 | MTR_5g068190 | 24.201 | 219 | 148 | 6 | 36 | 238 | 28 | 244 | 6.82e-11 | 63.2 |
| MS.gene073884.t1 | MTR_6g053000 | 28.079 | 203 | 128 | 7 | 25 | 214 | 18 | 215 | 7.84e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073884.t1 | AT1G04520 | 64.238 | 302 | 89 | 5 | 9 | 292 | 7 | 307 | 1.53e-127 | 365 |
| MS.gene073884.t1 | AT2G33330 | 60.726 | 303 | 104 | 5 | 3 | 292 | 4 | 304 | 3.77e-122 | 352 |
| MS.gene073884.t1 | AT5G43980 | 42.143 | 280 | 145 | 5 | 29 | 292 | 22 | 300 | 7.28e-68 | 213 |
| MS.gene073884.t1 | AT3G04370 | 35.577 | 312 | 170 | 5 | 9 | 291 | 8 | 317 | 6.22e-60 | 194 |
| MS.gene073884.t1 | AT3G04370 | 35.783 | 313 | 169 | 6 | 9 | 291 | 8 | 318 | 7.20e-60 | 193 |
| MS.gene073884.t1 | AT3G60720 | 31.439 | 264 | 159 | 7 | 35 | 288 | 29 | 280 | 7.70e-33 | 122 |
| MS.gene073884.t1 | AT3G60720 | 31.538 | 260 | 156 | 7 | 35 | 284 | 29 | 276 | 2.77e-32 | 120 |
| MS.gene073884.t1 | AT5G37660 | 31.618 | 272 | 177 | 4 | 23 | 292 | 25 | 289 | 2.74e-29 | 113 |
| MS.gene073884.t1 | AT2G01660 | 30.916 | 262 | 168 | 7 | 28 | 281 | 20 | 276 | 1.08e-28 | 111 |
| MS.gene073884.t1 | AT2G01660 | 30.916 | 262 | 168 | 7 | 28 | 281 | 20 | 276 | 1.24e-28 | 111 |
| MS.gene073884.t1 | AT5G37660 | 30.224 | 268 | 175 | 5 | 5 | 270 | 10 | 267 | 1.40e-28 | 111 |
| MS.gene073884.t1 | AT3G60720 | 30.131 | 229 | 140 | 6 | 35 | 256 | 29 | 244 | 2.70e-25 | 101 |
| MS.gene073884.t1 | AT2G01660 | 28.634 | 227 | 152 | 6 | 28 | 249 | 20 | 241 | 6.57e-23 | 95.5 |
| MS.gene073884.t1 | AT1G70690 | 27.365 | 296 | 192 | 10 | 9 | 291 | 9 | 294 | 6.73e-22 | 93.6 |
| MS.gene073884.t1 | AT5G48540 | 25.969 | 258 | 148 | 7 | 36 | 272 | 24 | 259 | 1.60e-17 | 80.9 |
| MS.gene073884.t1 | AT5G41290 | 24.701 | 251 | 164 | 5 | 4 | 238 | 3 | 244 | 1.97e-16 | 78.2 |
| MS.gene073884.t1 | AT5G41300 | 27.126 | 247 | 156 | 8 | 5 | 235 | 7 | 245 | 1.33e-12 | 67.0 |
| MS.gene073884.t1 | AT4G05200 | 25.498 | 251 | 162 | 6 | 2 | 239 | 8 | 246 | 1.94e-12 | 67.8 |
| MS.gene073884.t1 | AT4G05200 | 25.498 | 251 | 162 | 6 | 2 | 239 | 26 | 264 | 2.19e-12 | 67.8 |
Find 54 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCTGCATACCTGATATT+TGG | 0.124670 | 1.3:+26602083 | None:intergenic |
| CAAAATTTGTTGGACAAAAT+TGG | 0.141322 | 1.3:+26602175 | None:intergenic |
| GCTTTATCAGCGATGGAAAA+TGG | 0.195405 | 1.3:-26601168 | MS.gene073884:CDS |
| TAGAATAAATGAAAGAAATA+TGG | 0.209647 | 1.3:+26602474 | None:intergenic |
| GCTGCTAGAGTTCAACTTCT+TGG | 0.243055 | 1.3:-26602139 | MS.gene073884:CDS |
| GAATGTGGCAACTCTATTTC+TGG | 0.253750 | 1.3:-26601015 | MS.gene073884:CDS |
| ACAAACCAGTTATACTGTTT+TGG | 0.290553 | 1.3:+26602254 | None:intergenic |
| CATAAGTGTTTCATTAGTTA+TGG | 0.313486 | 1.3:-26600979 | MS.gene073884:CDS |
| TGTCTAGATGGAACTCCATT+AGG | 0.322448 | 1.3:+26600949 | None:intergenic |
| GCACAATGTGAAGGTGATAT+TGG | 0.371110 | 1.3:-26601090 | MS.gene073884:CDS |
| CTTTATCAGCGATGGAAAAT+GGG | 0.376842 | 1.3:-26601167 | MS.gene073884:CDS |
| AATCTGCATACCTGATATTT+GGG | 0.379186 | 1.3:+26602084 | None:intergenic |
| AATGTTGCTGGAAGTGGTTT+TGG | 0.382953 | 1.3:-26601207 | MS.gene073884:CDS |
| GCTGGTTATACCCAAATATC+AGG | 0.389407 | 1.3:-26602094 | MS.gene073884:intron |
| AGTGGCCAAAACAGTATAAC+TGG | 0.391004 | 1.3:-26602259 | MS.gene073884:CDS |
| GTTTGTGAGTATATTCCATT+TGG | 0.392368 | 1.3:+26602352 | None:intergenic |
| TATCTACTATATGAAGTTGC+TGG | 0.393316 | 1.3:-26602112 | MS.gene073884:CDS |
| AATGGGGTTGTTAGTGGTCA+TGG | 0.418001 | 1.3:-26601150 | MS.gene073884:CDS |
| TATCTTGCACAGATTATTGA+AGG | 0.421513 | 1.3:-26600176 | None:intergenic |
| AGTTATGGCTATTACCCTAA+TGG | 0.430880 | 1.3:-26600964 | MS.gene073884:CDS |
| CAAACACTTTCTACACTCCT+TGG | 0.431163 | 1.3:-26602334 | MS.gene073884:CDS |
| AGAATAAATGAAAGAAATAT+GGG | 0.443988 | 1.3:+26602475 | None:intergenic |
| GCAATGACAGGGCAAGATCC+AGG | 0.447894 | 1.3:-26600379 | MS.gene073884:intron |
| GTCTAGATGGAACTCCATTA+GGG | 0.462347 | 1.3:+26600950 | None:intergenic |
| ATAATACTAGGAGGAATTGC+TGG | 0.462780 | 1.3:-26600343 | MS.gene073884:CDS |
| TGTGGGATAACAAATGTTGC+TGG | 0.470043 | 1.3:-26601219 | MS.gene073884:CDS |
| GAGTATGAAGAATGTCTAGA+TGG | 0.479428 | 1.3:+26600937 | None:intergenic |
| ATGGAAAATGGGGTTGTTAG+TGG | 0.485449 | 1.3:-26601156 | MS.gene073884:CDS |
| GTTCTTACCTGAAGAAAATG+AGG | 0.492494 | 1.3:+26600915 | None:intergenic |
| TTATATTCTTGCTATTTGCT+AGG | 0.498339 | 1.3:-26600306 | MS.gene073884:CDS |
| AAGTTCTATAAAACCACTAC+TGG | 0.500206 | 1.3:-26602283 | MS.gene073884:CDS |
| CTGGTTTGTTCCAATGTAGA+GGG | 0.509794 | 1.3:-26602240 | MS.gene073884:CDS |
| ATAACAAATGTTGCTGGAAG+TGG | 0.510378 | 1.3:-26601213 | MS.gene073884:CDS |
| TTCTTCAGATTACACTACAT+TGG | 0.514719 | 1.3:-26602410 | MS.gene073884:CDS |
| GATATTGGTGATTCTGATTG+TGG | 0.528519 | 1.3:-26601075 | MS.gene073884:CDS |
| AAAACAGCTGCTATAATACT+AGG | 0.532912 | 1.3:-26600355 | MS.gene073884:CDS |
| CAGATGCTCTATAAGACTTG+TGG | 0.533238 | 1.3:-26601237 | MS.gene073884:CDS |
| AGATGCTCTATAAGACTTGT+GGG | 0.545982 | 1.3:-26601236 | MS.gene073884:CDS |
| TATAAAACCACTACTGGTAG+TGG | 0.547424 | 1.3:-26602277 | MS.gene073884:CDS |
| ACTGGTTTGTTCCAATGTAG+AGG | 0.558068 | 1.3:-26602241 | MS.gene073884:CDS |
| AAGATACTGCAAAATGAGGT+GGG | 0.564436 | 1.3:+26602431 | None:intergenic |
| AGACGCTGCTTTATCAGCGA+TGG | 0.565779 | 1.3:-26601175 | MS.gene073884:CDS |
| GAAGAAGATACTGCAAAATG+AGG | 0.566459 | 1.3:+26602427 | None:intergenic |
| GAAGATACTGCAAAATGAGG+TGG | 0.573407 | 1.3:+26602430 | None:intergenic |
| TAGTGAGATCCCCTCTACAT+TGG | 0.590991 | 1.3:+26602230 | None:intergenic |
| ACTAGGAGGAATTGCTGGAG+TGG | 0.599765 | 1.3:-26600338 | MS.gene073884:CDS |
| CAATGACAGGGCAAGATCCA+GGG | 0.608246 | 1.3:-26600378 | MS.gene073884:intron |
| CAGAGAGCTCAAGTTGAATG+TGG | 0.627327 | 1.3:-26601030 | MS.gene073884:CDS |
| ACAGCTGCTATAATACTAGG+AGG | 0.630493 | 1.3:-26600352 | MS.gene073884:CDS |
| TACACTACATTGGTCTACAA+AGG | 0.630549 | 1.3:-26602400 | MS.gene073884:CDS |
| TTTATCAGCGATGGAAAATG+GGG | 0.640047 | 1.3:-26601166 | MS.gene073884:CDS |
| TGGTTTGTTCCAATGTAGAG+GGG | 0.663909 | 1.3:-26602239 | MS.gene073884:CDS |
| AATTTGACAAAGAAACACAA+TGG | 0.727029 | 1.3:-26600283 | MS.gene073884:intron |
| ATTGTGAAACTAGTGAACCA+AGG | 0.728041 | 1.3:+26602317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAAATATAATAAGTAG+GGG | - | chr1.3:26600847-26600866 | MS.gene073884:intron | 10.0% |
| !! | AGAATAAATGAAAGAAATAT+GGG | + | chr1.3:26600200-26600219 | None:intergenic | 15.0% |
| !! | TAGAATAAATGAAAGAAATA+TGG | + | chr1.3:26600201-26600220 | None:intergenic | 15.0% |
| !!! | ATATCATGAATTTTTATTTC+TGG | + | chr1.3:26600917-26600936 | None:intergenic | 15.0% |
| !!! | TAAAATATCAATTTAGTTCA+TGG | - | chr1.3:26601953-26601972 | MS.gene073884:intron | 15.0% |
| !!! | TTTTTATACAACTAACTATA+TGG | - | chr1.3:26601545-26601564 | MS.gene073884:intron | 15.0% |
| !! | AAAATAAGTGTCAATTTGTA+TGG | - | chr1.3:26601831-26601850 | MS.gene073884:intron | 20.0% |
| !! | AGAGATTAAATTAAAGATAG+TGG | + | chr1.3:26600823-26600842 | None:intergenic | 20.0% |
| !! | TATCAATTTGATCATAACAA+TGG | + | chr1.3:26601008-26601027 | None:intergenic | 20.0% |
| !! | TTCCAATTGTAAAAATGATT+AGG | - | chr1.3:26601043-26601062 | MS.gene073884:CDS | 20.0% |
| !!! | ATTTTGAAATATTGATGATG+TGG | - | chr1.3:26602171-26602190 | MS.gene073884:CDS | 20.0% |
| ! | AAATAAGTAAGTGGATGTAA+TGG | - | chr1.3:26602005-26602024 | MS.gene073884:intron | 25.0% |
| ! | AATTTGACAAAGAAACACAA+TGG | - | chr1.3:26602389-26602408 | MS.gene073884:CDS | 25.0% |
| ! | ATAAAATCGGTCAAAATAGT+CGG | + | chr1.3:26601232-26601251 | None:intergenic | 25.0% |
| ! | CATAAGTGTTTCATTAGTTA+TGG | - | chr1.3:26601693-26601712 | MS.gene073884:intron | 25.0% |
| ! | CTTAACCATTGGAAAATTTA+GGG | + | chr1.3:26602226-26602245 | None:intergenic | 25.0% |
| ! | GCGTATGAAGTATATAAAAT+CGG | + | chr1.3:26601245-26601264 | None:intergenic | 25.0% |
| ! | TAACCAACATTTGTCATAAA+GGG | + | chr1.3:26601889-26601908 | None:intergenic | 25.0% |
| ! | TATGGACAACTGATTAAAAT+AGG | + | chr1.3:26601127-26601146 | None:intergenic | 25.0% |
| ! | TGATAATAATTTCAAACCGA+GGG | - | chr1.3:26602113-26602132 | MS.gene073884:CDS | 25.0% |
| ! | TTAACCAACATTTGTCATAA+AGG | + | chr1.3:26601890-26601909 | None:intergenic | 25.0% |
| !! | ATGTAATGGTTGATATTTGT+AGG | - | chr1.3:26602019-26602038 | MS.gene073884:intron | 25.0% |
| !! | ATTTTGTCCAACAAATTTTG+TGG | - | chr1.3:26600500-26600519 | MS.gene073884:intron | 25.0% |
| !! | CTATATGGCATTTTATGTTT+TGG | - | chr1.3:26601560-26601579 | MS.gene073884:intron | 25.0% |
| !! | GAAACTTTTATAGATCCAAA+TGG | - | chr1.3:26600305-26600324 | MS.gene073884:CDS | 25.0% |
| !! | TGAAAGAAATATGGGTTTTA+AGG | + | chr1.3:26600192-26600211 | None:intergenic | 25.0% |
| !! | TTGATAATAATTTCAAACCG+AGG | - | chr1.3:26602112-26602131 | MS.gene073884:CDS | 25.0% |
| !!! | ACAAGTTTTGTACAAATGTT+AGG | - | chr1.3:26601408-26601427 | MS.gene073884:intron | 25.0% |
| !!! | CAAAATTTGTTGGACAAAAT+TGG | + | chr1.3:26600500-26600519 | None:intergenic | 25.0% |
| !!! | CTTATTTTTGGTGATCAATT+TGG | + | chr1.3:26601992-26602011 | None:intergenic | 25.0% |
| !!! | GGTTTTATAGAACTTTGTTT+TGG | + | chr1.3:26600384-26600403 | None:intergenic | 25.0% |
| !!! | GTCCTAATCATTTTTACAAT+TGG | + | chr1.3:26601048-26601067 | None:intergenic | 25.0% |
| !!! | TACATCCACTTACTTATTTT+TGG | + | chr1.3:26602004-26602023 | None:intergenic | 25.0% |
| !!! | TTATATTCTTGCTATTTGCT+AGG | - | chr1.3:26602366-26602385 | MS.gene073884:CDS | 25.0% |
| !!! | TTTATAGAACTTTGTTTTGG+TGG | + | chr1.3:26600381-26600400 | None:intergenic | 25.0% |
| AAAACAGCTGCTATAATACT+AGG | - | chr1.3:26602317-26602336 | MS.gene073884:CDS | 30.0% | |
| AAATCTGCATACCTGATATT+TGG | + | chr1.3:26600592-26600611 | None:intergenic | 30.0% | |
| AAGTTCTATAAAACCACTAC+TGG | - | chr1.3:26600389-26600408 | MS.gene073884:intron | 30.0% | |
| AATCTGCATACCTGATATTT+GGG | + | chr1.3:26600591-26600610 | None:intergenic | 30.0% | |
| CCTTAACCATTGGAAAATTT+AGG | + | chr1.3:26602227-26602246 | None:intergenic | 30.0% | |
| CTACAGATTGAACCAAAATT+TGG | - | chr1.3:26601793-26601812 | MS.gene073884:intron | 30.0% | |
| CTCTTAGTAGTAGATGTTAA+TGG | + | chr1.3:26601070-26601089 | None:intergenic | 30.0% | |
| GATCACCAAAAATAAGTAAG+TGG | - | chr1.3:26601996-26602015 | MS.gene073884:intron | 30.0% | |
| GATGGTGATTAAATTGTTGT+TGG | - | chr1.3:26600956-26600975 | MS.gene073884:CDS | 30.0% | |
| GTTTGTGAGTATATTCCATT+TGG | + | chr1.3:26600323-26600342 | None:intergenic | 30.0% | |
| TAAAATCGGTCAAAATAGTC+GGG | + | chr1.3:26601231-26601250 | None:intergenic | 30.0% | |
| TAGAACGACTCAATTGAAAA+GGG | - | chr1.3:26601280-26601299 | MS.gene073884:intron | 30.0% | |
| TATCTACTATATGAAGTTGC+TGG | - | chr1.3:26600560-26600579 | MS.gene073884:intron | 30.0% | |
| TTCTTCAGATTACACTACAT+TGG | - | chr1.3:26600262-26600281 | MS.gene073884:intron | 30.0% | |
| TTTCATAATTGCTGCTAAGA+TGG | - | chr1.3:26600938-26600957 | MS.gene073884:CDS | 30.0% | |
| TTTCCAATGGTTAAGGAAAA+AGG | - | chr1.3:26602231-26602250 | MS.gene073884:CDS | 30.0% | |
| ! | ACAAACCAGTTATACTGTTT+TGG | + | chr1.3:26600421-26600440 | None:intergenic | 30.0% |
| ! | AGTTTTGCCACAAAATTTGT+TGG | + | chr1.3:26600510-26600529 | None:intergenic | 30.0% |
| ! | CCTAAATTTTCCAATGGTTA+AGG | - | chr1.3:26602224-26602243 | MS.gene073884:CDS | 30.0% |
| ! | GAGATGAATTTGAAACTAAG+TGG | - | chr1.3:26602071-26602090 | MS.gene073884:intron | 30.0% |
| ! | TTTTAATCAGTTGTCCATAG+TGG | - | chr1.3:26601128-26601147 | MS.gene073884:CDS | 30.0% |
| !! | ATTGAACCAAAATTTGGTGT+TGG | - | chr1.3:26601799-26601818 | MS.gene073884:intron | 30.0% |
| !! | ATTGATTTGATGCAATGACA+GGG | - | chr1.3:26602282-26602301 | MS.gene073884:CDS | 30.0% |
| !! | TACTAGTCTTCTATCTAAGT+AGG | - | chr1.3:26602254-26602273 | MS.gene073884:CDS | 30.0% |
| !! | TATTGATTTGATGCAATGAC+AGG | - | chr1.3:26602281-26602300 | MS.gene073884:CDS | 30.0% |
| !! | TTGAACCAAAATTTGGTGTT+GGG | - | chr1.3:26601800-26601819 | MS.gene073884:intron | 30.0% |
| !!! | CAAATTTTGGTTCAATCTGT+AGG | + | chr1.3:26601795-26601814 | None:intergenic | 30.0% |
| AACATTTGTCATAAAGGGCA+AGG | + | chr1.3:26601884-26601903 | None:intergenic | 35.0% | |
| AAGATACTGCAAAATGAGGT+GGG | + | chr1.3:26600244-26600263 | None:intergenic | 35.0% | |
| ACATAGTTCAAATTCTCTCG+AGG | + | chr1.3:26601348-26601367 | None:intergenic | 35.0% | |
| AGAACGACTCAATTGAAAAG+GGG | - | chr1.3:26601281-26601300 | MS.gene073884:intron | 35.0% | |
| AGATGCTCTATAAGACTTGT+GGG | - | chr1.3:26601436-26601455 | MS.gene073884:intron | 35.0% | |
| AGTTATGGCTATTACCCTAA+TGG | - | chr1.3:26601708-26601727 | MS.gene073884:intron | 35.0% | |
| ATAACAAATGTTGCTGGAAG+TGG | - | chr1.3:26601459-26601478 | MS.gene073884:intron | 35.0% | |
| ATAATACTAGGAGGAATTGC+TGG | - | chr1.3:26602329-26602348 | MS.gene073884:CDS | 35.0% | |
| ATATAGACCTCCTTCATAAG+TGG | + | chr1.3:26601155-26601174 | None:intergenic | 35.0% | |
| ATATCAACATGTTAGTGTCG+TGG | + | chr1.3:26600712-26600731 | None:intergenic | 35.0% | |
| ATTGTGAAACTAGTGAACCA+AGG | + | chr1.3:26600358-26600377 | None:intergenic | 35.0% | |
| CTTTATCAGCGATGGAAAAT+GGG | - | chr1.3:26601505-26601524 | MS.gene073884:intron | 35.0% | |
| GAAGAAGATACTGCAAAATG+AGG | + | chr1.3:26600248-26600267 | None:intergenic | 35.0% | |
| GAATGTGTAATCGGTCAATT+TGG | - | chr1.3:26601204-26601223 | MS.gene073884:CDS | 35.0% | |
| GAGTATGAAGAATGTCTAGA+TGG | + | chr1.3:26601738-26601757 | None:intergenic | 35.0% | |
| GTAGAACGACTCAATTGAAA+AGG | - | chr1.3:26601279-26601298 | MS.gene073884:intron | 35.0% | |
| GTTCTTACCTGAAGAAAATG+AGG | + | chr1.3:26601760-26601779 | None:intergenic | 35.0% | |
| TATAAAACCACTACTGGTAG+TGG | - | chr1.3:26600395-26600414 | MS.gene073884:intron | 35.0% | |
| TTGCCCTTTATGACAAATGT+TGG | - | chr1.3:26601883-26601902 | MS.gene073884:intron | 35.0% | |
| TTTATCAGCGATGGAAAATG+GGG | - | chr1.3:26601506-26601525 | MS.gene073884:intron | 35.0% | |
| ! | AAACTATCAGTGGTGGAAAA+TGG | - | chr1.3:26600645-26600664 | MS.gene073884:intron | 35.0% |
| ! | AACTATCAGTGGTGGAAAAT+GGG | - | chr1.3:26600646-26600665 | MS.gene073884:intron | 35.0% |
| ! | CTTACAAGATCGAACTCTTT+TGG | - | chr1.3:26601377-26601396 | MS.gene073884:intron | 35.0% |
| ! | CTTTTCCCAACACCAAATTT+TGG | + | chr1.3:26601808-26601827 | None:intergenic | 35.0% |
| ! | GATATTGGTGATTCTGATTG+TGG | - | chr1.3:26601597-26601616 | MS.gene073884:intron | 35.0% |
| ! | GTACCTTTTTCCTTAACCAT+TGG | + | chr1.3:26602237-26602256 | None:intergenic | 35.0% |
| ! | GTCTCTGAAGAATGTGTAAT+CGG | - | chr1.3:26601195-26601214 | MS.gene073884:CDS | 35.0% |
| ! | TACACTACATTGGTCTACAA+AGG | - | chr1.3:26600272-26600291 | MS.gene073884:intron | 35.0% |
| ! | TCATACTCCTCATTTTCTTC+AGG | - | chr1.3:26601750-26601769 | MS.gene073884:intron | 35.0% |
| ! | TTTTAATCGAGTTTGTCCCT+CGG | + | chr1.3:26602132-26602151 | None:intergenic | 35.0% |
| !! | CAAAATTTGGTGTTGGGAAA+AGG | - | chr1.3:26601806-26601825 | MS.gene073884:intron | 35.0% |
| !! | TTTGGTGCTTAAACTATCAG+TGG | - | chr1.3:26600635-26600654 | MS.gene073884:intron | 35.0% |
| !!! | TATGTTTTGGCACAATGTGA+AGG | - | chr1.3:26601573-26601592 | MS.gene073884:intron | 35.0% |
| AACGACTCAATTGAAAAGGG+GGG | - | chr1.3:26601283-26601302 | MS.gene073884:intron | 40.0% | |
| AATGGGGTTGTTAATGGTCA+TGG | - | chr1.3:26600663-26600682 | MS.gene073884:intron | 40.0% | |
| ACAGCTGCTATAATACTAGG+AGG | - | chr1.3:26602320-26602339 | MS.gene073884:CDS | 40.0% | |
| AGTGGCCAAAACAGTATAAC+TGG | - | chr1.3:26600413-26600432 | MS.gene073884:intron | 40.0% | |
| ATGGAAAATGGGGTTGTTAG+TGG | - | chr1.3:26601516-26601535 | MS.gene073884:intron | 40.0% | |
| CAAACACTTTCTACACTCCT+TGG | - | chr1.3:26600338-26600357 | MS.gene073884:CDS | 40.0% | |
| CAGATGCTCTATAAGACTTG+TGG | - | chr1.3:26601435-26601454 | MS.gene073884:intron | 40.0% | |
| GAACGACTCAATTGAAAAGG+GGG | - | chr1.3:26601282-26601301 | MS.gene073884:intron | 40.0% | |
| GAAGATACTGCAAAATGAGG+TGG | + | chr1.3:26600245-26600264 | None:intergenic | 40.0% | |
| GAATGTGGCAACTCTATTTC+TGG | - | chr1.3:26601657-26601676 | MS.gene073884:intron | 40.0% | |
| GCACAATGTGAAGGTGATAT+TGG | - | chr1.3:26601582-26601601 | MS.gene073884:intron | 40.0% | |
| GCTGGTTATACCCAAATATC+AGG | - | chr1.3:26600578-26600597 | MS.gene073884:intron | 40.0% | |
| GCTTTATCAGCGATGGAAAA+TGG | - | chr1.3:26601504-26601523 | MS.gene073884:intron | 40.0% | |
| GTCTAGATGGAACTCCATTA+GGG | + | chr1.3:26601725-26601744 | None:intergenic | 40.0% | |
| GTGGAAAATGGGGTTGTTAA+TGG | - | chr1.3:26600657-26600676 | MS.gene073884:intron | 40.0% | |
| TGTCTAGATGGAACTCCATT+AGG | + | chr1.3:26601726-26601745 | None:intergenic | 40.0% | |
| TGTGATGTCTGTTGTAGATG+AGG | - | chr1.3:26601094-26601113 | MS.gene073884:CDS | 40.0% | |
| TGTGGGATAACAAATGTTGC+TGG | - | chr1.3:26601453-26601472 | MS.gene073884:intron | 40.0% | |
| ! | AATGTTGCTGGAAGTGGTTT+TGG | - | chr1.3:26601465-26601484 | MS.gene073884:intron | 40.0% |
| ! | ACGTCATCCATCAAAAGTGT+TGG | - | chr1.3:26600792-26600811 | MS.gene073884:intron | 40.0% |
| ! | ACTATCAGTGGTGGAAAATG+GGG | - | chr1.3:26600647-26600666 | MS.gene073884:intron | 40.0% |
| ! | CTGCTCCCTAAATTTTCCAA+TGG | - | chr1.3:26602218-26602237 | MS.gene073884:CDS | 40.0% |
| !! | ACTGGTTTGTTCCAATGTAG+AGG | - | chr1.3:26600431-26600450 | MS.gene073884:intron | 40.0% |
| !! | ATTATAGCAGCTGTTTTCCC+TGG | + | chr1.3:26602314-26602333 | None:intergenic | 40.0% |
| !! | CGTCATCCATCAAAAGTGTT+GGG | - | chr1.3:26600793-26600812 | MS.gene073884:intron | 40.0% |
| !! | CTGGTTTGTTCCAATGTAGA+GGG | - | chr1.3:26600432-26600451 | MS.gene073884:intron | 40.0% |
| !! | GTCATCCATCAAAAGTGTTG+GGG | - | chr1.3:26600794-26600813 | MS.gene073884:intron | 40.0% |
| !! | TGGTTTGTTCCAATGTAGAG+GGG | - | chr1.3:26600433-26600452 | MS.gene073884:intron | 40.0% |
| AATGGGGTTGTTAGTGGTCA+TGG | - | chr1.3:26601522-26601541 | MS.gene073884:intron | 45.0% | |
| CAACATGTTAGTGTCGTGGT+TGG | + | chr1.3:26600708-26600727 | None:intergenic | 45.0% | |
| CCTTCATAAGTGGTCCACTA+TGG | + | chr1.3:26601145-26601164 | None:intergenic | 45.0% | |
| GCTGCTAGAGTTCAACTTCT+TGG | - | chr1.3:26600533-26600552 | MS.gene073884:intron | 45.0% | |
| GGTGCTTAAACTATCAGTGG+TGG | - | chr1.3:26600638-26600657 | MS.gene073884:intron | 45.0% | |
| TAGTGAGATCCCCTCTACAT+TGG | + | chr1.3:26600445-26600464 | None:intergenic | 45.0% | |
| ! | TAGTGGACCACTTATGAAGG+AGG | - | chr1.3:26601145-26601164 | MS.gene073884:CDS | 45.0% |
| !! | CAGAGAGCTCAAGTTGAATG+TGG | - | chr1.3:26601642-26601661 | MS.gene073884:intron | 45.0% |
| !! | CCATAGTGGACCACTTATGA+AGG | - | chr1.3:26601142-26601161 | MS.gene073884:CDS | 45.0% |
| !! | AATATATAAATATAATAAGT+AGG | - | chr1.3:26600845-26600864 | MS.gene073884:intron | 5.0% |
| !! | ATATATAAATATAATAAGTA+GGG | - | chr1.3:26600846-26600865 | MS.gene073884:intron | 5.0% |
| !!! | ATTTTTTTTTTATATCTATT+TGG | - | chr1.3:26600617-26600636 | MS.gene073884:intron | 5.0% |
| ACTAGGAGGAATTGCTGGAG+TGG | - | chr1.3:26602334-26602353 | MS.gene073884:CDS | 50.0% | |
| CAATGACAGGGCAAGATCCA+GGG | - | chr1.3:26602294-26602313 | MS.gene073884:CDS | 50.0% | |
| ! | AGACGCTGCTTTATCAGCGA+TGG | - | chr1.3:26601497-26601516 | MS.gene073884:intron | 50.0% |
| ! | GGTAGCCCCAACACTTTTGA+TGG | + | chr1.3:26600802-26600821 | None:intergenic | 50.0% |
| !! | GTTTTGGCCACTACCAGTAG+TGG | + | chr1.3:26600405-26600424 | None:intergenic | 50.0% |
| GCAATGACAGGGCAAGATCC+AGG | - | chr1.3:26602293-26602312 | MS.gene073884:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 26600179 | 26602515 | 26600179 | ID=MS.gene073884 |
| chr1.3 | mRNA | 26600179 | 26602515 | 26600179 | ID=MS.gene073884.t1;Parent=MS.gene073884 |
| chr1.3 | exon | 26602095 | 26602515 | 26602095 | ID=MS.gene073884.t1.exon1;Parent=MS.gene073884.t1 |
| chr1.3 | CDS | 26602095 | 26602515 | 26602095 | ID=cds.MS.gene073884.t1;Parent=MS.gene073884.t1 |
| chr1.3 | exon | 26600923 | 26601264 | 26600923 | ID=MS.gene073884.t1.exon2;Parent=MS.gene073884.t1 |
| chr1.3 | CDS | 26600923 | 26601264 | 26600923 | ID=cds.MS.gene073884.t1;Parent=MS.gene073884.t1 |
| chr1.3 | exon | 26600284 | 26600391 | 26600284 | ID=MS.gene073884.t1.exon3;Parent=MS.gene073884.t1 |
| chr1.3 | CDS | 26600284 | 26600391 | 26600284 | ID=cds.MS.gene073884.t1;Parent=MS.gene073884.t1 |
| chr1.3 | exon | 26600179 | 26600186 | 26600179 | ID=MS.gene073884.t1.exon4;Parent=MS.gene073884.t1 |
| chr1.3 | CDS | 26600179 | 26600186 | 26600179 | ID=cds.MS.gene073884.t1;Parent=MS.gene073884.t1 |
| Gene Sequence |
| Protein sequence |
