Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063697.t1 | XP_003609716.2 | 91.6 | 669 | 50 | 1 | 1 | 669 | 1 | 663 | 0.00E+00 | 1201.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063697.t1 | F4JJT9 | 70.1 | 678 | 178 | 4 | 3 | 670 | 2 | 664 | 1.2e-277 | 957.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063697.t1 | G7JLL8 | 91.6 | 669 | 50 | 1 | 1 | 669 | 1 | 663 | 0.0e+00 | 1201.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049356 | MS.gene063697 | 0.807492 | 4.92E-50 | -1.69E-46 |
| MS.gene049369 | MS.gene063697 | 0.836167 | 1.10E-56 | -1.69E-46 |
| MS.gene051228 | MS.gene063697 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene063697 | 0.802687 | 4.98E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene063697 | 0.805521 | 1.28E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene063697 | 0.802297 | 6.00E-49 | -1.69E-46 |
| MS.gene053384 | MS.gene063697 | 0.817854 | 2.66E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene063697 | 0.849497 | 3.11E-60 | -1.69E-46 |
| MS.gene056609 | MS.gene063697 | 0.837908 | 3.94E-57 | -1.69E-46 |
| MS.gene056719 | MS.gene063697 | 0.807095 | 5.98E-50 | -1.69E-46 |
| MS.gene057927 | MS.gene063697 | 0.827124 | 1.86E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene063697 | 0.813536 | 2.44E-51 | -1.69E-46 |
| MS.gene05959 | MS.gene063697 | 0.94629 | 6.11E-105 | -1.69E-46 |
| MS.gene059676 | MS.gene063697 | 0.839907 | 1.20E-57 | -1.69E-46 |
| MS.gene059708 | MS.gene063697 | 0.829228 | 5.79E-55 | -1.69E-46 |
| MS.gene059711 | MS.gene063697 | 0.81343 | 2.57E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene063697 | 0.805339 | 1.40E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene063697 | 0.804234 | 2.38E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene063697 | 0.803304 | 3.72E-49 | -1.69E-46 |
| MS.gene061051 | MS.gene063697 | -0.812401 | 4.32E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene063697 | MS.gene55470 | PPI |
| MS.gene063697 | MS.gene070324 | PPI |
| MS.gene063697 | MS.gene074123 | PPI |
| MS.gene048788 | MS.gene063697 | PPI |
| MS.gene072797 | MS.gene063697 | PPI |
| MS.gene063697 | MS.gene015567 | PPI |
| MS.gene063697 | MS.gene71948 | PPI |
| MS.gene063697 | MS.gene72164 | PPI |
| MS.gene063697 | MS.gene011533 | PPI |
| MS.gene063697 | MS.gene030419 | PPI |
| MS.gene063697 | MS.gene050373 | PPI |
| MS.gene063697 | MS.gene47111 | PPI |
| MS.gene62901 | MS.gene063697 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063697.t1 | MTR_4g120810 | 94.784 | 671 | 25 | 3 | 1 | 669 | 1 | 663 | 0.0 | 1307 |
| MS.gene063697.t1 | MTR_8g104740 | 93.908 | 673 | 29 | 3 | 1 | 669 | 1 | 665 | 0.0 | 1294 |
| MS.gene063697.t1 | MTR_4g120810 | 95.987 | 598 | 14 | 3 | 1 | 596 | 1 | 590 | 0.0 | 1181 |
| MS.gene063697.t1 | MTR_8g104740 | 95.000 | 600 | 18 | 3 | 1 | 596 | 1 | 592 | 0.0 | 1167 |
| MS.gene063697.t1 | MTR_1g113700 | 84.084 | 622 | 72 | 3 | 57 | 669 | 6 | 609 | 0.0 | 1060 |
| MS.gene063697.t1 | MTR_4g052070 | 76.523 | 673 | 126 | 7 | 1 | 670 | 1 | 644 | 0.0 | 1023 |
| MS.gene063697.t1 | MTR_8g104740 | 96.468 | 453 | 16 | 0 | 217 | 669 | 1 | 453 | 0.0 | 912 |
| MS.gene063697.t1 | MTR_8g104740 | 99.042 | 313 | 3 | 0 | 284 | 596 | 1 | 313 | 0.0 | 650 |
| MS.gene063697.t1 | MTR_5g037520 | 86.792 | 106 | 14 | 0 | 676 | 781 | 247 | 352 | 1.77e-50 | 184 |
| MS.gene063697.t1 | MTR_2g036980 | 69.048 | 126 | 21 | 1 | 656 | 781 | 214 | 321 | 2.08e-43 | 162 |
| MS.gene063697.t1 | MTR_8g007295 | 24.658 | 292 | 182 | 9 | 71 | 345 | 83 | 353 | 1.04e-17 | 87.4 |
| MS.gene063697.t1 | MTR_8g007295 | 24.658 | 292 | 182 | 9 | 71 | 345 | 83 | 353 | 1.31e-17 | 87.8 |
| MS.gene063697.t1 | MTR_4g127770 | 25.694 | 144 | 105 | 2 | 201 | 343 | 728 | 870 | 9.20e-12 | 69.7 |
| MS.gene063697.t1 | MTR_4g127770 | 26.531 | 147 | 100 | 3 | 201 | 343 | 241 | 383 | 2.54e-11 | 68.2 |
| MS.gene063697.t1 | MTR_4g127790 | 25.694 | 144 | 105 | 2 | 201 | 343 | 39 | 181 | 1.53e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063697.t1 | AT4G33760 | 76.795 | 599 | 135 | 1 | 72 | 670 | 70 | 664 | 0.0 | 997 |
| MS.gene063697.t1 | AT4G33760 | 76.316 | 532 | 122 | 1 | 139 | 670 | 1 | 528 | 0.0 | 880 |
| MS.gene063697.t1 | AT3G13490 | 23.913 | 276 | 192 | 7 | 72 | 345 | 116 | 375 | 1.09e-14 | 78.6 |
| MS.gene063697.t1 | AT4G26870 | 27.950 | 322 | 173 | 11 | 84 | 362 | 79 | 384 | 4.09e-11 | 67.0 |
| MS.gene063697.t1 | AT3G11710 | 26.163 | 172 | 121 | 3 | 179 | 345 | 233 | 403 | 5.56e-11 | 66.6 |
Find 192 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTCTGATATGGAAAATT+TGG | 0.049982 | 4.3:+1693259 | None:intergenic |
| TTCCCCTCATGTCAGATATT+TGG | 0.160996 | 4.3:-1695626 | MS.gene063697:intron |
| CGACATCGTTGGAAGTTAAT+TGG | 0.230061 | 4.3:+1705245 | None:intergenic |
| AATTAAAGTTGGAATGGTTT+TGG | 0.232428 | 4.3:+1705411 | None:intergenic |
| GTTTATGTGGCTCATGAATT+AGG | 0.251279 | 4.3:-1700245 | MS.gene063697:CDS |
| TCGTCAAAGGTAATGCTTTA+AGG | 0.270505 | 4.3:+1705476 | None:intergenic |
| TTCCTCTTTAAGAGAATCTT+TGG | 0.271786 | 4.3:+1704907 | None:intergenic |
| ACTTCAGAACTTGATGTATT+AGG | 0.272788 | 4.3:+1695521 | None:intergenic |
| TTCTGCTTTAGTATCAAGTA+TGG | 0.291029 | 4.3:-1700381 | MS.gene063697:CDS |
| GCAAGGTTGTTCATGTCTTC+AGG | 0.297939 | 4.3:+1699902 | None:intergenic |
| GATAGCCAATTTCTCTGATA+TGG | 0.306649 | 4.3:+1693250 | None:intergenic |
| CTACATCCTCCAGTGTTGTT+TGG | 0.315148 | 4.3:+1695455 | None:intergenic |
| TTTCAGGCTGAAGCTAAGTT+TGG | 0.318198 | 4.3:-1698271 | MS.gene063697:intron |
| TCTAGATCAAATCTGGTATC+TGG | 0.318832 | 4.3:+1700913 | None:intergenic |
| GACTTACCAAGATCTCTTAA+AGG | 0.320508 | 4.3:+1695251 | None:intergenic |
| TTGCCATTCAAGGTGTTGTT+AGG | 0.321014 | 4.3:-1705057 | MS.gene063697:CDS |
| TTGTTCATGTCTTCAGGATT+TGG | 0.324171 | 4.3:+1699908 | None:intergenic |
| TTCTCTGATATGGAAAATTT+GGG | 0.325669 | 4.3:+1693260 | None:intergenic |
| AAATAATCCCGGGCACCTTC+TGG | 0.327607 | 4.3:+1702781 | None:intergenic |
| TTTCTCAGGGTCTTCCTTCA+AGG | 0.336742 | 4.3:-1700689 | MS.gene063697:CDS |
| AACACTTCCAGATGAATTTC+CGG | 0.336916 | 4.3:-1705122 | MS.gene063697:CDS |
| CAACTAGAGAGGATTTATTA+AGG | 0.343846 | 4.3:-1700352 | MS.gene063697:CDS |
| GGTATCGATATCTTGATCTA+AGG | 0.345062 | 4.3:-1703036 | MS.gene063697:CDS |
| TTCTTGTTGATTGATTGATT+TGG | 0.350211 | 4.3:+1705028 | None:intergenic |
| AGACCATACCGGCATTGTTC+AGG | 0.353786 | 4.3:-1705149 | MS.gene063697:CDS |
| TCACTTCCTTTAAGAGATCT+TGG | 0.358006 | 4.3:-1695257 | MS.gene063697:intron |
| AGAAGGACAACATCTCTTAT+AGG | 0.364089 | 4.3:+1695311 | None:intergenic |
| AAAGTAATTTGTGTACCTTC+TGG | 0.364160 | 4.3:-1700631 | MS.gene063697:CDS |
| AATGCAGGAGGCATAGCTTT+TGG | 0.364469 | 4.3:-1697520 | MS.gene063697:intron |
| TGCAATCAATAACCTTAGAT+TGG | 0.370097 | 4.3:-1705089 | MS.gene063697:CDS |
| CTAAATACCTGGATTCTTGA+TGG | 0.371339 | 4.3:+1702754 | None:intergenic |
| CGACATACAACAAAAGGTTT+TGG | 0.374977 | 4.3:-1699703 | MS.gene063697:CDS |
| CTGGTTGTGGAAATTAAAGT+TGG | 0.387880 | 4.3:+1705400 | None:intergenic |
| CAACCACATACTCCAATCTA+AGG | 0.390109 | 4.3:+1705077 | None:intergenic |
| GCTATTTAAGCAAATGCTAA+TGG | 0.395004 | 4.3:-1702097 | MS.gene063697:CDS |
| ATCAACAAGAAGATGAAAAC+TGG | 0.395189 | 4.3:-1705016 | MS.gene063697:CDS |
| GGCAAAACTGTTCGTCTTTG+TGG | 0.398786 | 4.3:-1705223 | MS.gene063697:CDS |
| AGATTGGTTATGTTGCTAGC+TGG | 0.406190 | 4.3:-1697490 | MS.gene063697:CDS |
| GATTGGTTATGTTGCTAGCT+GGG | 0.406860 | 4.3:-1697489 | MS.gene063697:CDS |
| CTAGAGAGAAAGAAAATTGA+TGG | 0.416674 | 4.3:+1705439 | None:intergenic |
| TGCTTCAGCATATGTAAGCC+TGG | 0.420918 | 4.3:+1700960 | None:intergenic |
| GCTGAAGCAATGAATAGATA+TGG | 0.425444 | 4.3:-1700946 | MS.gene063697:CDS |
| AATCCACAAAATTGAATGTC+TGG | 0.427154 | 4.3:+1700111 | None:intergenic |
| TAAACGCGACATACAACAAA+AGG | 0.428071 | 4.3:-1699709 | MS.gene063697:CDS |
| TGAGTTCACACAACTAGATA+TGG | 0.428133 | 4.3:-1701429 | MS.gene063697:CDS |
| AAGGGATTCGTTGAGTGGTT+TGG | 0.431189 | 4.3:+1705297 | None:intergenic |
| TTAAATAGCTGAGGGCTTTG+TGG | 0.433840 | 4.3:+1702111 | None:intergenic |
| TAGCTGGGGCTAATTCAATC+AGG | 0.434319 | 4.3:-1697474 | MS.gene063697:CDS |
| ATGTAGTGAAGTTGTAGAAG+AGG | 0.434847 | 4.3:-1695438 | MS.gene063697:CDS |
| CATTGAGATTGCTGCAAATG+AGG | 0.438443 | 4.3:-1704990 | MS.gene063697:CDS |
| CCTTGCATCGGCTCGTGCAT+TGG | 0.439535 | 4.3:-1699885 | MS.gene063697:CDS |
| GTAAGCCTGGGGAAAGGGTT+TGG | 0.441264 | 4.3:+1700973 | None:intergenic |
| AAACTGTTCGTCTTTGTGGA+TGG | 0.443016 | 4.3:-1705219 | MS.gene063697:CDS |
| GAATCATTCCACTCAAACAT+TGG | 0.443454 | 4.3:+1700079 | None:intergenic |
| TTATTAAGGCGATGCTCTGC+AGG | 0.444994 | 4.3:-1700338 | MS.gene063697:CDS |
| CTCTGATTACTGATATGATT+AGG | 0.445203 | 4.3:-1695412 | MS.gene063697:CDS |
| AATGTTTGAGTGGAATGATT+CGG | 0.449218 | 4.3:-1700077 | MS.gene063697:CDS |
| TGCGCAACCGGAAATTCATC+TGG | 0.450378 | 4.3:+1705115 | None:intergenic |
| AGAGGAAAGGGTTCTGGTTG+TGG | 0.451123 | 4.3:+1705387 | None:intergenic |
| TTATACTTTGTCAGATTGGC+GGG | 0.451733 | 4.3:-1699749 | MS.gene063697:intron |
| CACTCAACGAATCCCTTCAA+TGG | 0.452205 | 4.3:-1705291 | MS.gene063697:CDS |
| TTGATTGCAGAATGCGCAAC+CGG | 0.452729 | 4.3:+1705103 | None:intergenic |
| ATCAAGTTCTGAAGTAGAAA+AGG | 0.454482 | 4.3:-1695513 | MS.gene063697:CDS |
| TGTTCAAGAAACCTGCGGTT+TGG | 0.456454 | 4.3:-1693312 | MS.gene063697:CDS |
| TGAAGAGTCGTGCGAGGAAG+TGG | 0.456530 | 4.3:-1695288 | MS.gene063697:CDS |
| TACAACGAAGCACACAAATC+TGG | 0.457051 | 4.3:-1700553 | MS.gene063697:CDS |
| AGGCCTAACAACACCTTGAA+TGG | 0.458898 | 4.3:+1705054 | None:intergenic |
| TTCGTTGAGTGGTTTGGCAG+TGG | 0.459133 | 4.3:+1705303 | None:intergenic |
| TTTCTCAAGATCACGGAGAA+TGG | 0.463469 | 4.3:-1700514 | MS.gene063697:intron |
| CGTGGAACACTTACCTCAAT+CGG | 0.464305 | 4.3:+1704882 | None:intergenic |
| TCTTAAGAAACCTGGTGCAC+AGG | 0.464845 | 4.3:-1700584 | MS.gene063697:CDS |
| AGAACTTGATGTATTAGGCT+TGG | 0.467777 | 4.3:+1695526 | None:intergenic |
| AAGCAAATGCTAATGGTAGC+TGG | 0.467850 | 4.3:-1702090 | MS.gene063697:CDS |
| CATATGTAAGCCTGGGGAAA+GGG | 0.478597 | 4.3:+1700968 | None:intergenic |
| AACTGTTCGTCTTTGTGGAT+GGG | 0.478967 | 4.3:-1705218 | MS.gene063697:CDS |
| CTTATGACATGGTTTACAAT+GGG | 0.479877 | 4.3:-1699862 | MS.gene063697:CDS |
| GATCCACACCAGAAGGTGCC+CGG | 0.482589 | 4.3:-1702789 | MS.gene063697:CDS |
| TGAAGAGTTGTGCGAGAAAG+TGG | 0.485032 | 4.3:-1695342 | MS.gene063697:CDS |
| AAATTGATGGGGTGCGTCGA+AGG | 0.489063 | 4.3:+1705452 | None:intergenic |
| CATTGAAGGGATTCGTTGAG+TGG | 0.489601 | 4.3:+1705292 | None:intergenic |
| TTTAGTTCCATCAAGAATCC+AGG | 0.490512 | 4.3:-1702761 | MS.gene063697:intron |
| AAGAGAATCTTTGGCATCAT+CGG | 0.497970 | 4.3:+1704916 | None:intergenic |
| AGCAATGAATAGATATGGTT+CGG | 0.498070 | 4.3:-1700941 | MS.gene063697:CDS |
| AGAAACAGAGGAAAGGGTTC+TGG | 0.500167 | 4.3:+1705381 | None:intergenic |
| TGCCAAAGATTCTCTTAAAG+AGG | 0.500755 | 4.3:-1704909 | MS.gene063697:CDS |
| ACTCAACGAATCCCTTCAAT+GGG | 0.501431 | 4.3:-1705290 | MS.gene063697:CDS |
| TTCTTGAAGCTCTTGACATG+GGG | 0.505034 | 4.3:-1698243 | MS.gene063697:CDS |
| TAAATACCACCCTGTGCACC+AGG | 0.505577 | 4.3:+1700574 | None:intergenic |
| GCACACAAATCTGGTGCAAA+GGG | 0.506073 | 4.3:-1700544 | MS.gene063697:CDS |
| TGAAGCAGAAACAGAGGAAA+GGG | 0.506946 | 4.3:+1705375 | None:intergenic |
| TTGAACCATGGCCAAACCGC+AGG | 0.508707 | 4.3:+1693301 | None:intergenic |
| AGAAACCTGCGGTTTGGCCA+TGG | 0.510379 | 4.3:-1693306 | MS.gene063697:CDS |
| GAGTATGTGGTTGCCATTCA+AGG | 0.511957 | 4.3:-1705067 | MS.gene063697:CDS |
| GAGTTCTTGAAACCCATTGA+AGG | 0.515807 | 4.3:+1705278 | None:intergenic |
| TAGAGAGAAAGAAAATTGAT+GGG | 0.516501 | 4.3:+1705440 | None:intergenic |
| TTCTCTGATTCCTTGGAGTG+TGG | 0.517839 | 4.3:-1700664 | MS.gene063697:CDS |
| GGAGACTGTAGGCATCTCAA+TGG | 0.520526 | 4.3:-1699682 | MS.gene063697:CDS |
| TAACCTTAGATTGGAGTATG+TGG | 0.520626 | 4.3:-1705080 | MS.gene063697:CDS |
| GGAATCAGAGAAAACCTTGA+AGG | 0.521670 | 4.3:+1700675 | None:intergenic |
| TCAGGATTTGGTGCAGTGAA+AGG | 0.522281 | 4.3:+1699920 | None:intergenic |
| TAATGAAGAGTTGATCAGAA+AGG | 0.523027 | 4.3:-1701369 | MS.gene063697:intron |
| TCGTGCATTGGCTTATGACA+TGG | 0.525618 | 4.3:-1699873 | MS.gene063697:CDS |
| ATTATACTTTGTCAGATTGG+CGG | 0.527189 | 4.3:-1699750 | MS.gene063697:intron |
| GGTGTGGATCTTGACAGTAT+TGG | 0.527300 | 4.3:+1702802 | None:intergenic |
| TTCTCCGTGATCTTGAGAAA+AGG | 0.528267 | 4.3:+1700517 | None:intergenic |
| AGAGACAACATATCCTCTAA+AGG | 0.530071 | 4.3:+1701392 | None:intergenic |
| AGCATTTGCTTAAATAGCTG+AGG | 0.531601 | 4.3:+1702102 | None:intergenic |
| AGATCGTCTTAGAGTTTATG+TGG | 0.532962 | 4.3:-1700258 | MS.gene063697:CDS |
| GCATATGTAAGCCTGGGGAA+AGG | 0.533395 | 4.3:+1700967 | None:intergenic |
| TAACCTGAACAATGCCGGTA+TGG | 0.533768 | 4.3:+1705146 | None:intergenic |
| GCTTCAGCATATGTAAGCCT+GGG | 0.534696 | 4.3:+1700961 | None:intergenic |
| TCGGTTGTAGTAACTAAGAA+TGG | 0.534853 | 4.3:+1704935 | None:intergenic |
| GCTTATGACATGGTTTACAA+TGG | 0.535736 | 4.3:-1699863 | MS.gene063697:CDS |
| TGTGGAAATTAAAGTTGGAA+TGG | 0.536332 | 4.3:+1705405 | None:intergenic |
| CAATTAACTTCCAACGATGT+CGG | 0.540000 | 4.3:-1705244 | MS.gene063697:CDS |
| AGCACACAAATCTGGTGCAA+AGG | 0.540341 | 4.3:-1700545 | MS.gene063697:CDS |
| CTTCTTGAAGCTCTTGACAT+GGG | 0.540430 | 4.3:-1698244 | MS.gene063697:CDS |
| AATTCAGTTCTTAAGAAACC+TGG | 0.540659 | 4.3:-1700592 | MS.gene063697:CDS |
| GTTTCTGTTTCAGAAGGAAG+TGG | 0.543539 | 4.3:+1705334 | None:intergenic |
| TGTAGGCATCTCAATGGAGC+AGG | 0.544534 | 4.3:-1699676 | MS.gene063697:intron |
| TTGATGGAACTAAATAATCC+CGG | 0.544592 | 4.3:+1702770 | None:intergenic |
| TCTGATTCCTTGGAGTGTGG+TGG | 0.548275 | 4.3:-1700661 | MS.gene063697:CDS |
| AATTACCAAACCCTTTCCCC+AGG | 0.550475 | 4.3:-1700978 | MS.gene063697:CDS |
| GCAAATAAAATCAGATCACT+TGG | 0.551349 | 4.3:+1700314 | None:intergenic |
| AGTTCTTGAAACCCATTGAA+GGG | 0.554892 | 4.3:+1705279 | None:intergenic |
| ATGGTCTCTAAGATTGAGAA+AGG | 0.555297 | 4.3:+1705165 | None:intergenic |
| TAGCTGAGGGCTTTGTGGCA+AGG | 0.556212 | 4.3:+1702116 | None:intergenic |
| ATGAGAGTTTCTGTTTCAGA+AGG | 0.556345 | 4.3:+1705328 | None:intergenic |
| CTCAATCTTAGAGACCATAC+CGG | 0.558715 | 4.3:-1705160 | MS.gene063697:CDS |
| ATAAATATTATCAAGTAGCA+AGG | 0.559397 | 4.3:-1702062 | MS.gene063697:intron |
| CTTAAGAAACCTGGTGCACA+GGG | 0.560030 | 4.3:-1700583 | MS.gene063697:CDS |
| GCATTTGCTTAAATAGCTGA+GGG | 0.564155 | 4.3:+1702103 | None:intergenic |
| ATCCCGGGCACCTTCTGGTG+TGG | 0.564930 | 4.3:+1702786 | None:intergenic |
| ATCCACACCAGAAGGTGCCC+GGG | 0.566710 | 4.3:-1702788 | MS.gene063697:CDS |
| CCGACTTTCCAATGTTTGAG+TGG | 0.567755 | 4.3:-1700087 | MS.gene063697:CDS |
| CCAATGCACGAGCCGATGCA+AGG | 0.567886 | 4.3:+1699885 | None:intergenic |
| TCTCGCACAACTCTTCAAGA+AGG | 0.569131 | 4.3:+1695348 | None:intergenic |
| CCACTCAAACATTGGAAAGT+CGG | 0.571037 | 4.3:+1700087 | None:intergenic |
| TTAAAGAGGAAGTCCGATTG+AGG | 0.573366 | 4.3:-1704895 | MS.gene063697:intron |
| AATTGATGGGGTGCGTCGAA+GGG | 0.576335 | 4.3:+1705453 | None:intergenic |
| ATATCTAGTTGTGTGAACTC+AGG | 0.578660 | 4.3:+1701431 | None:intergenic |
| TGTTGTAACCTGAACAATGC+CGG | 0.579719 | 4.3:+1705141 | None:intergenic |
| ATACTTTGTCAGATTGGCGG+GGG | 0.581028 | 4.3:-1699747 | MS.gene063697:intron |
| TGACATGGTTTACAATGGGG+TGG | 0.585116 | 4.3:-1699858 | MS.gene063697:CDS |
| TTGAAGCAGAAACAGAGGAA+AGG | 0.587552 | 4.3:+1705374 | None:intergenic |
| CATGGTTTACAATGGGGTGG+AGG | 0.588103 | 4.3:-1699855 | MS.gene063697:intron |
| TGATATGGAAAATTTGGGAG+AGG | 0.591826 | 4.3:+1693265 | None:intergenic |
| AATAACACCACCACACTCCA+AGG | 0.592452 | 4.3:+1700654 | None:intergenic |
| TCTTCTTGAAGCTCTTGACA+TGG | 0.595100 | 4.3:-1698245 | MS.gene063697:CDS |
| AGTGGAATGATTCGGAGCAG+AGG | 0.597352 | 4.3:-1700069 | MS.gene063697:CDS |
| CCTCGGAAGGTGATCTCGTG+AGG | 0.598148 | 4.3:+1697410 | None:intergenic |
| AGAAGGACAACATCGTTGAA+AGG | 0.600314 | 4.3:+1695365 | None:intergenic |
| AAATCAACTCCAAACAACAC+TGG | 0.601010 | 4.3:-1695464 | MS.gene063697:CDS |
| TCTGTTTCAGAAGGAAGTGG+TGG | 0.602903 | 4.3:+1705337 | None:intergenic |
| CTGTCAAGATCCACACCAGA+AGG | 0.603413 | 4.3:-1702796 | MS.gene063697:CDS |
| TTGATTGATTGATTTGGACG+AGG | 0.603430 | 4.3:+1705034 | None:intergenic |
| TGTTGGGGATCCACCTCGGA+AGG | 0.606271 | 4.3:+1697397 | None:intergenic |
| ATTGGTTATGTTGCTAGCTG+GGG | 0.606846 | 4.3:-1697488 | MS.gene063697:CDS |
| AGCTGGGGCTAATTCAATCA+GGG | 0.612567 | 4.3:-1697473 | MS.gene063697:CDS |
| TGATGGAACTAAATAATCCC+GGG | 0.612782 | 4.3:+1702771 | None:intergenic |
| ATCGATATCTTGATCTAAGG+AGG | 0.613730 | 4.3:-1703033 | MS.gene063697:CDS |
| GTGCGTCGAAGGGTCGTCAA+AGG | 0.615765 | 4.3:+1705463 | None:intergenic |
| TCTTGAAGCTCTTGACATGG+GGG | 0.620703 | 4.3:-1698242 | MS.gene063697:CDS |
| TATGGATTCTGCAACTAGAG+AGG | 0.622469 | 4.3:-1700363 | MS.gene063697:CDS |
| TATACTTTGTCAGATTGGCG+GGG | 0.624951 | 4.3:-1699748 | MS.gene063697:intron |
| CCTCGCACGACTCTTCAAGA+AGG | 0.625648 | 4.3:+1695294 | None:intergenic |
| CATGTTGCTGCGGCATAATG+TGG | 0.628032 | 4.3:-1702993 | MS.gene063697:CDS |
| TGATTCGGAGCAGAGGCTTG+AGG | 0.628865 | 4.3:-1700062 | MS.gene063697:intron |
| CACACAACTAGATATGGAGA+TGG | 0.630880 | 4.3:-1701423 | MS.gene063697:CDS |
| AGACATGAACAACCTTGCAT+CGG | 0.632479 | 4.3:-1699897 | MS.gene063697:CDS |
| CCTTCTTGAAGAGTCGTGCG+AGG | 0.635320 | 4.3:-1695294 | MS.gene063697:CDS |
| GGTTTGGCCATGGTTCAACA+TGG | 0.642281 | 4.3:-1693296 | MS.gene063697:CDS |
| CTCGGAAGGTGATCTCGTGA+GGG | 0.643918 | 4.3:+1697411 | None:intergenic |
| TTGTATTGAAGCAGAAACAG+AGG | 0.644634 | 4.3:+1705369 | None:intergenic |
| TTAGAAGACTTACCATGTGG+CGG | 0.647061 | 4.3:+1698217 | None:intergenic |
| CCTCACGAGATCACCTTCCG+AGG | 0.653984 | 4.3:-1697410 | MS.gene063697:intron |
| CTAATCATATCAGTAATCAG+AGG | 0.658638 | 4.3:+1695413 | None:intergenic |
| GTTGCACTTCACAGAGTCCA+CGG | 0.658925 | 4.3:-1705196 | MS.gene063697:CDS |
| TCAACTCCAAACAACACTGG+AGG | 0.661057 | 4.3:-1695461 | MS.gene063697:CDS |
| TACTTTGTCAGATTGGCGGG+GGG | 0.661761 | 4.3:-1699746 | MS.gene063697:intron |
| GATCAAATCTGGTATCTGGA+CGG | 0.664712 | 4.3:+1700917 | None:intergenic |
| AAGTATGTTCAAGAAACCTG+CGG | 0.672599 | 4.3:-1693317 | MS.gene063697:CDS |
| TGAATTCTAACATGTTGCTG+CGG | 0.674898 | 4.3:-1703003 | MS.gene063697:CDS |
| AGATATCTAGAAGACATACA+TGG | 0.678657 | 4.3:-1702956 | MS.gene063697:CDS |
| GATTAGGTCTAAAGAGACAA+CGG | 0.684940 | 4.3:-1695396 | MS.gene063697:CDS |
| CTTCAGCATATGTAAGCCTG+GGG | 0.689625 | 4.3:+1700962 | None:intergenic |
| AAGAAACCTGGTGCACAGGG+TGG | 0.690711 | 4.3:-1700580 | MS.gene063697:CDS |
| GTTTCAAGAACTCATCATTG+CGG | 0.693107 | 4.3:-1705268 | MS.gene063697:CDS |
| AGAGAGAAAGAAAATTGATG+GGG | 0.704931 | 4.3:+1705441 | None:intergenic |
| TTATGACATGGTTTACAATG+GGG | 0.724188 | 4.3:-1699861 | MS.gene063697:CDS |
| TGAGAAAGGTGAGTCCACCG+TGG | 0.751901 | 4.3:+1705179 | None:intergenic |
| GCACTTCACAGAGTCCACGG+TGG | 0.824126 | 4.3:-1705193 | MS.gene063697:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1693130 | 1705512 | 1693130 | ID=MS.gene063697 |
| chr4.3 | mRNA | 1693130 | 1705512 | 1693130 | ID=MS.gene063697.t1;Parent=MS.gene063697 |
| chr4.3 | exon | 1704896 | 1705512 | 1704896 | ID=MS.gene063697.t1.exon1;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1704896 | 1705512 | 1704896 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1702946 | 1703057 | 1702946 | ID=MS.gene063697.t1.exon2;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1702946 | 1703057 | 1702946 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1702762 | 1702833 | 1702762 | ID=MS.gene063697.t1.exon3;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1702762 | 1702833 | 1702762 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1702063 | 1702154 | 1702063 | ID=MS.gene063697.t1.exon4;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1702063 | 1702154 | 1702063 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1701370 | 1701490 | 1701370 | ID=MS.gene063697.t1.exon5;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1701370 | 1701490 | 1701370 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1700903 | 1701025 | 1700903 | ID=MS.gene063697.t1.exon6;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1700903 | 1701025 | 1700903 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1700515 | 1700722 | 1700515 | ID=MS.gene063697.t1.exon7;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1700515 | 1700722 | 1700515 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1700232 | 1700419 | 1700232 | ID=MS.gene063697.t1.exon8;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1700232 | 1700419 | 1700232 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1700063 | 1700134 | 1700063 | ID=MS.gene063697.t1.exon9;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1700063 | 1700134 | 1700063 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1699856 | 1699954 | 1699856 | ID=MS.gene063697.t1.exon10;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1699856 | 1699954 | 1699856 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1699677 | 1699757 | 1699677 | ID=MS.gene063697.t1.exon11;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1699677 | 1699757 | 1699677 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1698230 | 1698287 | 1698230 | ID=MS.gene063697.t1.exon12;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1698230 | 1698287 | 1698230 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1697411 | 1697535 | 1697411 | ID=MS.gene063697.t1.exon13;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1697411 | 1697535 | 1697411 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1695258 | 1695633 | 1695258 | ID=MS.gene063697.t1.exon14;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1695258 | 1695633 | 1695258 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1693235 | 1693340 | 1693235 | ID=MS.gene063697.t1.exon15;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1693235 | 1693340 | 1693235 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| chr4.3 | exon | 1693130 | 1693142 | 1693130 | ID=MS.gene063697.t1.exon16;Parent=MS.gene063697.t1 |
| chr4.3 | CDS | 1693130 | 1693142 | 1693130 | ID=cds.MS.gene063697.t1;Parent=MS.gene063697.t1 |
| Gene Sequence |
| Protein sequence |
