AlfalfaGEDB | MS.gene07615

M. sativa cultivar XinJiangDaYe / MS.gene07615

KEGG: -
GO: GO:0003674 GO:0003824
PFAM: PF03190.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07615.t1	XP_003625880.2	98.5	755	11	0	1	755	44	798	0.00E+00	1513.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07615.t1	Q8TB22	42.7	762	385	14	7	749	56	784	1.5e-170	601.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07615.t1	G7KRS7	98.5	755	11	0	1	755	44	798	0.0e+00	1513.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051360	MS.gene07615	0.800188	1.62E-48	-1.69E-46
MS.gene051525	MS.gene07615	0.820433	6.88E-53	-1.69E-46
MS.gene051568	MS.gene07615	0.834379	3.10E-56	-1.69E-46
MS.gene051588	MS.gene07615	0.814002	1.92E-51	-1.69E-46
MS.gene052011	MS.gene07615	-0.830253	3.26E-55	-1.69E-46
MS.gene052159	MS.gene07615	0.814278	1.67E-51	-1.69E-46
MS.gene053169	MS.gene07615	0.831875	1.30E-55	-1.69E-46
MS.gene053176	MS.gene07615	0.802216	6.23E-49	-1.69E-46
MS.gene054183	MS.gene07615	0.839769	1.30E-57	-1.69E-46
MS.gene054548	MS.gene07615	0.811307	7.48E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07615.t1	MTR_7g108310	98.543	755	11	0	1	755	44	798	0.0	1549
MS.gene07615.t1	MTR_3g438040	97.917	48	1	0	1	48	1	48	8.54e-27	104
MS.gene07615.t1	MTR_5g010890	84.000	50	2	1	1	50	1	44	1.07e-20	86.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene07615.t1	AT4G03200	74.528	742	189	0	10	751	77	818	0.0	1192
MS.gene07615.t1	AT4G03200	73.431	685	182	0	67	751	1	685	0.0	1078

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Find 182 sgRNAs with CRISPR-Local

Find 441 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATCATTTAACAACT+TGG	0.479813	7.1:+5622160	None:intergenic
AAAGCCACATTTGGATGATA+AGG	0.465549	7.1:-5618663	MS.gene07615:intron
AAATTCAACTTTCCTGTTGT+CGG	0.407243	7.1:-5618324	MS.gene07615:CDS
AACTATGACTCAGAATACGG+TGG	0.724711	7.1:-5620897	MS.gene07615:CDS
AACTTCACTCACTGTTCTAT+TGG	0.220073	7.1:+5617018	None:intergenic
AAGAAACCAGGAGCTTTGGA+TGG	0.568767	7.1:+5617753	None:intergenic
AAGAAATTCTTGGAGAATGC+AGG	0.527305	7.1:-5618718	MS.gene07615:CDS
AAGAGGCTTGGGAAAATAAG+AGG	0.470199	7.1:-5621367	MS.gene07615:CDS
AAGAGTCCTTTCTCTCAATC+AGG	0.432050	7.1:+5618783	None:intergenic
AAGATAAGGGCTTTGTTCTG+AGG	0.551809	7.1:+5622870	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTCAACTTTCCTGTTGT+CGG	-	chr7.1:5621341-5621360	MS.gene07615:CDS	30.0%
AAGAATTAGAAGATACGTAC+AGG	+	chr7.1:5616839-5616858	None:intergenic	30.0%
AAGATGCTTATAGAGACTAT+AGG	-	chr7.1:5617883-5617902	MS.gene07615:intron	30.0%
AAGCTGGAATAAAACATCAA+AGG	+	chr7.1:5621510-5621529	None:intergenic	30.0%
AATACCTTATCATCCAAATG+TGG	+	chr7.1:5621009-5621028	None:intergenic	30.0%
AATATAAGTCAGGCTATCTA+CGG	+	chr7.1:5620506-5620525	None:intergenic	30.0%
AATTCTGATAAGTTACCTGA+TGG	-	chr7.1:5618387-5618406	MS.gene07615:CDS	30.0%
AATTTGGAAGTCCAATAAAG+GGG	+	chr7.1:5620531-5620550	None:intergenic	30.0%
ACTTATATTCACCCCTTTAT+TGG	-	chr7.1:5620517-5620536	MS.gene07615:intron	30.0%
AGAAGATGCTTTATGATCAA+GGG	-	chr7.1:5619203-5619222	MS.gene07615:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	5616746	5622941	5616746	ID=MS.gene07615
chr7.1	mRNA	5616746	5622941	5616746	ID=MS.gene07615.t1;Parent=MS.gene07615
chr7.1	exon	5622849	5622941	5622849	ID=MS.gene07615.t1.exon1;Parent=MS.gene07615.t1
chr7.1	CDS	5622849	5622941	5622849	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5622679	5622751	5622679	ID=MS.gene07615.t1.exon2;Parent=MS.gene07615.t1
chr7.1	CDS	5622679	5622751	5622679	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5622315	5622336	5622315	ID=MS.gene07615.t1.exon3;Parent=MS.gene07615.t1
chr7.1	CDS	5622315	5622336	5622315	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5622148	5622226	5622148	ID=MS.gene07615.t1.exon4;Parent=MS.gene07615.t1
chr7.1	CDS	5622148	5622226	5622148	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5622005	5622037	5622005	ID=MS.gene07615.t1.exon5;Parent=MS.gene07615.t1
chr7.1	CDS	5622005	5622037	5622005	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5621584	5621732	5621584	ID=MS.gene07615.t1.exon6;Parent=MS.gene07615.t1
chr7.1	CDS	5621584	5621732	5621584	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5621241	5621397	5621241	ID=MS.gene07615.t1.exon7;Parent=MS.gene07615.t1
chr7.1	CDS	5621241	5621397	5621241	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5620688	5620928	5620688	ID=MS.gene07615.t1.exon8;Parent=MS.gene07615.t1
chr7.1	CDS	5620688	5620928	5620688	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5620255	5620496	5620255	ID=MS.gene07615.t1.exon9;Parent=MS.gene07615.t1
chr7.1	CDS	5620255	5620496	5620255	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5618664	5618927	5618664	ID=MS.gene07615.t1.exon10;Parent=MS.gene07615.t1
chr7.1	CDS	5618664	5618927	5618664	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5618317	5618427	5618317	ID=MS.gene07615.t1.exon11;Parent=MS.gene07615.t1
chr7.1	CDS	5618317	5618427	5618317	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5617653	5617877	5617653	ID=MS.gene07615.t1.exon12;Parent=MS.gene07615.t1
chr7.1	CDS	5617653	5617877	5617653	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5617364	5617567	5617364	ID=MS.gene07615.t1.exon13;Parent=MS.gene07615.t1
chr7.1	CDS	5617364	5617567	5617364	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5617030	5617206	5617030	ID=MS.gene07615.t1.exon14;Parent=MS.gene07615.t1
chr7.1	CDS	5617030	5617206	5617030	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1
chr7.1	exon	5616746	5616943	5616746	ID=MS.gene07615.t1.exon15;Parent=MS.gene07615.t1
chr7.1	CDS	5616746	5616943	5616746	ID=cds.MS.gene07615.t1;Parent=MS.gene07615.t1

Gene Sequence

>MS.gene07615

ATGGCTACATCATCTCATTCCAATCAACACAAGTTTACCAATCGACTTGCCTCAGAACAAAGCCCTTATCTTCTTCAACACGCTCATAACCCTGTACGTATCTTCTAATTCTTCCCTAATTTCATTTTTATTTTTTTCAATCTCACTTTGTTTTCGTTGATTAATTAATAACTCGTTCATTTGATTTAAGGTTGATTGGTATCCATGGGGTGAAGAAGCTTTCGCTGAAGCTCGCCGCAGAGATGCTCCTATCTTCTTATCAAGTATATATAATTCTCTACTTTTCCTAATTTAGTTTTTTTTTTTTTCTTAAATATATTTTTAGTCCCAATAAAATTCTCTACTTAGTCCTACCTAAGTTTTATTCAATTCAGTCCCTATATTCAAAAAATTAAACTTAATCCGTTTATGTATTACTATTTAGTTCTAGGGACTAAAATTGAAAGAAGAAGAAAATTATATAGTGATGATGAAACTTGCAAAATCGTGAATTTTATAGAGGTTAAAAATATATTTAACTCTTTATATTGAGAAAAACTTGGTTGTGTAATTAACCTCTGGTTTTGTATGTGGTGATGTGGTTCTAATGCCAATTTGATTTGAAGTTGGGTACAGCACTTGTCATTGGTATGTGTGGATCAAAACTGCTACATTTGATGTCAATTTTTTAATAAGTTTATTTTGACATTTGATATTTTGGAAATTTTGATTTAAGGTGTCATGTTATGGAGGTTGAGTCTTTTGAGGATGAGGGAATTGCCAAGTTGTTAAATGATTGGTTTGTTAGCATTAAGGTAAATCACCCCTTTATGTTTTTCTATTGCTTTGAGTTCTTACATTATATCAACAATCACCATTACTTAACAAGTTGCTCTACCTTGTTCCATACCAATGCTTCCAATAGGTGGATCGAGAGGAGCGACCAGATGTTGATAAGGTAACTTAATTTTCCATTTAATTTATACTTATATAAGGTTTTATCAGGTTAGAGCATGATCTATCTATTTATCAATCTATATATATAATGACAATCAGAAGGATAATAACTGTTCTATATTAAGGGATAGAATAGATGGTTTTTAACTTTTTAATAAACTATCCTTAATTTTTGTAAAAGTCTCTGGAATTTGAATGGTTAAGATGCTTATAGAGACTATAGGGTGTTCCACTGCTAATAAGATGCACTAAAAGATTTTTTTCTCTGCGCAGGTATACATGACGTATGTGCAGGCTTTGTATGGTGGAGGAGGTTGGCCCCTGACTGTGTTTCTTTCACCCGACTTGAAACCTTTAATGGGTGGAACTTACTTTCCCCCTGAAGATAAATATGGCCGGCCTGGATTTAAGACTATACTCAGGTTAGAATTATTGTATATGTTTGCTTAAATCATCAACATACTTGCGCTCTCGTTCTCAATAACTTCGGTGGATTGCTTGTCACTGTTTGCTAAGTTATAGAACTTAAGGTCAATGGTTTAAAATCATTGTTCTGGCTCTTGGAGTTCTTACTTGTATACTATTTGTTTTGTTCCTATTTTATCCAGAAAGGTAAAAGAGGCTTGGGAAAATAAGAGGGATATGCTAGTTAAGAGTGGAACATTTGCAATTGAACAGCTTTCTGAGGCACTGTCTAGTAGTTCGAATTCTGATAAGTTACCTGATGGTGTTTCTGAAGATGCATTACGTCTATGCTCAGAGCAGGTAAGGCTATGTGCATCGGCTTTTTTTGACTATTTCAATTTCAAATTCAAATTTGTTAGCATTTTCCCCTCCATTTCTTAGACACAAGGGAATGTAAGGAAAAGGAAAAAATGGTTTCTGTGAATTGAGTCTTGCTATCCTGCGTTTTCTCTTTTCTGTATATGAGGAACAGGGGAAAGTAGGGAATTGTCAAAAACACAACAATCTTGTTTTCTCATTTATAAAAGTTTATTAAATTTAAGGCTGATAAATACTAGTGTTTGTAACTTGTAAGAATCTTGAGTATAATTCTATCTTACTATTTTCTTTAAGCTCTCTGAGAACTATGACTCAGAATACGGTGGTTTTGGATCTGCACCAAAATTTCCAAGACCGGTTGAGATCAACTTGATGCTTTACAAATCTAAAAAGTTGGAGGATACCGAAAAGTTAGATGGAGCTAACAAAAGTCAGAAAATGGTTTTCTTTACCTTGCAATGCATGGCAAAAGGAGGCGTCCACGATCATGTTGGAGGAGGGTTTCACAGATATAGCGTGGATGAATGCTGGCATGGTAATTTTTTCTTGAACAACCATCAGTTGTATCTGATAAGTCTATGAGCTATAGAATGTATATATAGTATACATATGCTAATTTCTGAGCATTTTGATTTTTCCATGTTAATTAGGATGTGCTGTACTATTCAGTGCTCTCTATTCTCAAATGTTAAGATATTTATTCATTGAGCTCTTATACCCTTGCAGTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATTTAGATGCTTTTTCTATCACAAAAGACAACTTCTATTCATATTTATCACGGGATATCCTGGACTATTTGAGGAGAGACATGATTGGTCCAGAAGGTGAAATTTTTTCAGCAGAGGATGCTGACAGTGCGGAGAATGAAGGGGATACGCGAAAAAAGGAAGGAGCATTTTACGTATGGACCAGCAAAGAGGTCTGTCATTCAAGTTTTATCTGCATTTCCGTAATATATTTCTTATGGCTAATTGCATTTTAGGTCTCTGAAAACACAATATTTATAGAATAAATTAGACCATGAATTTGTAAAAAAAAAAACAATTCAATAGTCTAAACTTCAAATCACCGTATTGTTGTTTTACTTGTGAGTCATGATCCGTCAACAAACTTTGACTATTTTATATGTTTTCAATCGGCTGTTTTGGTCACCTACATATGTTGTGCTACACAACCTTGGATACAAATATTTATATTTGTTTGGTTGCAATATCTTTAATAGGAATGGGAGGGTAGGCTTTGCTTAAATAGGTCAGGCCTGTTTTAAAATTCAAACCCCATGTTTGTCTTGATTATCATAACTCATAAGCTTGTTTTTAGGCCTGGCCTGTTAGCATGTTTAAAGGAATGATATCCAATCTATCTCTAAGTTCTAAGTGCGTTCAAGCGCTAATAGGCGAACATGGACAAGATAAATAAGGGTCAAGTAGTGGAGTGATGAGGAGGTGGAGAGTTCAATCCCTACTCCCAGCATAATATGAAGAATGCTAACACTGACCGTTTAAAAAAAAATAGGCGTCAAGGCATGATAAGTGAGGGTCGAAATTGAGTGGGTTAAGTTGAATATTCTCTAAGATTGTGATTGTCTTGTTTATATGATAAAAGTGTTTTTTGATGTCTGACTTTTTAAAAGTATATTTTGCAATCATTCCATAAACATATCGCTAAATAATCTGAAGTGTTTTTATGTATGCCATTTTGCTGATTTTTTTAATAAAAAAATTCTTATTTCTTTAAAAGGGTAAATAGTTAAGCAAATGATTTGAACACATTATAAAAATCTTACTATATTATGAACAGAAATATTATAATACTATTTATATTCATTTAAATAGGTCAGCCTATTAGGCCTATGAGGCTTTTTAGATAGCTTGTAGCTTGACCTTTTTAGCTGAATAGGTTTATAAAAAAAAAATTAAAAAAAAAAAAAACTTTGTCTTCTCTATTTAAAAAAAATCTAGCTGCCTAATGTAGGCTTGGTCCGTAATCCCGTAGATAGCCTGACTTATATTCACCCCTTTATTGGACTTCCAAATTGAATATTAAAGTTAATAATGACTAATGAGCAAATAAATCATGGAGATCATTTTTCCTTTATAAAAATTTTGGTTTAAACTTTGATGTTCGTTTTTCGGAACATATCTACGTCTTTTCCTACATTGTTTTAATTTCTCATAAGGTGTGGTGTAATTATGATCAAATTTCCAAATTTTTAACTGGCACTTAACCTGGTTTGTTCTCTTTAGATTGAAGACTTACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATAAAACAGATGGGTAACTGTGACCTATCTGAAATGAGTGATCCTCACAATGAATTCAAAGGAAAGAATGTCCTGATTGAGAGAAAGGACTCTTCAGAAATGGCGTCAAAATATGGCATGTCAATTGAGACATATCAAGAAATTCTTGGAGAATGCAGGCGTAAGTTGTTTGAAGTAAGGTTGAAGCGCCCAAAGCCACATTTGGATGATAAGGTATTAGGTATTTCCCTTAGGCAGTCTATTTATTTAGGTTCCACCAGTAGCGATTTAGGTTTGAATCTTTTAATCTAGCTCCTCTAAAGTGAGCAACTCACTTAGGAGTGTAAAGTGAGTAATGTAACTGTTGATGAACAAACTATGGTTAATATTATATTTACATGCATCACAAGATTTTTCTCATTTTTTTTGTATGGTCGCAACTCTCAAGACAAAATACCCTATGCTTGTAGGTTATTGTATCTTGGAATGGACTGGTTATCTCATCTTTTGCTAGGGCTTCTAAGATTCTAAAGGGTGAAGCTGAAGGAATCAAATTCAACTTTCCTGTTGTCGGCACTGAAGTAAGTTTTGTCCTCAATTATTACAGTTGTAATTTTGATAAAACAGTAATTAATATTACTTTGAAAATGACAATTAAAACGAACAAAAAAATTACAAAAGCCCGACACTTAATTAGGAAAAGAGGGAGTGAGAAAGCCTTTGATGTTTTATTCCAGCTTAATGACTACCAATATTTAAAAAGATGGGAAACGGTCCTCTTATTATGTTGCTTCTGGAAGATGTCTGTAAACTATTGTCGCCATAAGTGTACAATTTTATACTGTTAATCATAATTCTTGCTTTGGACAACGAGTGGTTTCTGGCTTTCTTGATGGGAATTGCCAGTTGAAAGTATGAAGAAATTGTGGGTGAGGCTGTTGGGCAGCAAAATTGACTCTTTTCTGTTCAGTAATTAATTATGTATTTAATTTTCTCCTCCTTTTGATTGTGAAATTCCAGCCAAAGGAGTACTTGAGAATAGCAGATAAAGCAGCATCCTTTATTAGGAATCAACTTTACAACACAGAGACTCGCAGACTACAACATAGTTTCAGAAATTCTCCATCCAAAGCTCCTGGTTTCTTGGATGATTATGCCTTTTTGATATCTGGATTACTCGATCTCTATGAATTTGGAGGTGAAATCAACTGGCTTTTATGGGCCATTGAATTGCAGGAAACCCAGGTAAAGATTGATGTCTGGACTTGATGGAAGTTTCGGTGATTTTCTTGCCAGGACTTCTGTTGCTAATGAGATGAACTGCTTGCAGGATACTTTGTTTCTTGACAAGGATGGTGGTGGGTATTTCAATAATACAGGAGAAGATTCTTCGGTTCTTCTCCGTGTGAAGGAAGATCATGACGGGGCAGAACCCTCAGGGAACTCGGTCTCCGCGTTAAATCTTATAAGGTTGGCTTCATTGGTTTCTGGAAGTAAAGCTGAGCATTATAAGCGAAACGCGGAACGTCTATTGGTATGTAAACCCCTCCTCTCTTTCCTCATGAAAAAACAGTTTCTCCTTGTTTATGCGCTAGTTGGATAGGATTATTATCGGGAATGAATATATTATCTACCAGGTGATCACTAGATCAGTTGCAACTAACTAGGATTCCCTTTAAACGGTATTGCAGGCAGTTTTTGAGAAAAGATTGAAAGATACGGCTATGGCGGTGCCTTTAATGTGTTGTGCAGCAGACATGCTGCGTGTACCTTCCCGTAAGCAAGTGGTACTGGTGGGTGAAAGGACTTCCGAGGAATTTGAAAGCATGCTTGCTGCAGCTCACGCATTATATGATCCCAATAGAACAGTGAGTGAAGTTATTTTTATAAAGTTAATGTCTCCATGTTTCTGCATGGTTGTCAACAATAATATTTGTGTTGGTGTTAATTGCAGGTTATCCATATAGATCCCAACAACAAAGAAGAGATGGATTTTTGGGAAGTGAATAACAGCAATATTGCTTTGATGGCGAAGAATAACTATTCATGCAGCAAGGTTGTAGCTCTTGTATGCCAAAACTTCACTTGTAGTGCCCCTGTCACTGATCATTCGTCGCTTGAAGCTTTGCTCTCCCAAAAATTCTCTTCATAG

Protein sequence

>MS.gene07615.t1

MATSSHSNQHKFTNRLASEQSPYLLQHAHNPVDWYPWGEEAFAEARRRDAPIFLSIGYSTCHWCHVMEVESFEDEGIAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLTVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKEAWENKRDMLVKSGTFAIEQLSEALSSSSNSDKLPDGVSEDALRLCSEQLSENYDSEYGGFGSAPKFPRPVEINLMLYKSKKLEDTEKLDGANKSQKMVFFTLQCMAKGGVHDHVGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDAFSITKDNFYSYLSRDILDYLRRDMIGPEGEIFSAEDADSAENEGDTRKKEGAFYVWTSKEIEDLLGEHAALFEEHYYIKQMGNCDLSEMSDPHNEFKGKNVLIERKDSSEMASKYGMSIETYQEILGECRRKLFEVRLKRPKPHLDDKVIVSWNGLVISSFARASKILKGEAEGIKFNFPVVGTEPKEYLRIADKAASFIRNQLYNTETRRLQHSFRNSPSKAPGFLDDYAFLISGLLDLYEFGGEINWLLWAIELQETQDTLFLDKDGGGYFNNTGEDSSVLLRVKEDHDGAEPSGNSVSALNLIRLASLVSGSKAEHYKRNAERLLAVFEKRLKDTAMAVPLMCCAADMLRVPSRKQVVLVGERTSEEFESMLAAAHALYDPNRTVIHIDPNNKEEMDFWEVNNSNIALMAKNNYSCSKVVALVCQNFTCSAPVTDHSSLEALLSQKFSS