AlfalfaGEDB | MS.gene08354

M. sativa cultivar XinJiangDaYe / MS.gene08354

KEGG: -
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF03171.23 PF14226.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08354.t1	RHN42329.1	96.9	355	11	0	1	355	1	355	3.80E-200	707.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08354.t1	D4N502	51.5	309	144	3	53	355	52	360	6.1e-90	332.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08354.t1	A0A396GMF6	96.9	355	11	0	1	355	1	355	2.7e-200	707.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene08354	0.807221	5.62E-50	-1.69E-46
MS.gene049813	MS.gene08354	0.819384	1.19E-52	-1.69E-46
MS.gene051044	MS.gene08354	0.8169	4.36E-52	-1.69E-46
MS.gene05240	MS.gene08354	0.820783	5.71E-53	-1.69E-46
MS.gene054277	MS.gene08354	0.808371	3.20E-50	-1.69E-46
MS.gene056590	MS.gene08354	0.806794	6.92E-50	-1.69E-46
MS.gene056591	MS.gene08354	0.808082	3.69E-50	-1.69E-46
MS.gene056748	MS.gene08354	0.801052	1.08E-48	-1.69E-46
MS.gene056856	MS.gene08354	0.802267	6.08E-49	-1.69E-46
MS.gene057261	MS.gene08354	0.800305	1.53E-48	-1.69E-46

Showing 1 to 10 of 15 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08354.t1	MTR_0009s0050	48.837	344	174	2	13	355	6	348	3.44e-119	348
MS.gene08354.t1	MTR_0009s0050	48.837	344	174	2	13	355	6	348	5.28e-119	348
MS.gene08354.t1	MTR_0328s0030	49.387	326	163	2	31	355	22	346	3.39e-118	346
MS.gene08354.t1	MTR_5g055680	47.093	344	180	2	13	355	6	348	7.11e-118	345
MS.gene08354.t1	MTR_5g048570	47.674	344	176	3	13	355	6	346	4.18e-116	340
MS.gene08354.t1	MTR_5g048740	48.318	327	166	3	31	355	22	347	9.89e-116	340
MS.gene08354.t1	MTR_5g055900	47.478	337	175	2	20	355	13	348	1.40e-115	339
MS.gene08354.t1	MTR_5g055800	49.080	326	163	3	31	355	24	347	8.44e-115	337
MS.gene08354.t1	MTR_0009s0480	48.466	326	166	2	31	355	23	347	1.66e-114	337
MS.gene08354.t1	MTR_8g064200	45.217	345	186	3	13	355	11	354	8.06e-114	335

Showing 1 to 10 of 220 entries

Previous1 2 3 4 5…22Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08354.t1	AT1G78550	50.000	340	167	2	19	355	17	356	6.65e-114	335
MS.gene08354.t1	AT1G17020	47.674	344	173	4	18	355	16	358	1.84e-112	332
MS.gene08354.t1	AT4G25310	54.514	288	126	3	70	355	69	353	5.14e-106	315
MS.gene08354.t1	AT4G25300	46.667	330	170	4	31	355	28	356	6.41e-104	310
MS.gene08354.t1	AT1G17010	45.773	343	181	4	18	355	16	358	2.52e-103	308
MS.gene08354.t1	AT1G78550	52.920	274	128	1	83	355	5	278	5.52e-99	294
MS.gene08354.t1	AT4G25310	49.826	287	113	4	70	355	69	325	3.21e-86	263
MS.gene08354.t1	AT3G21420	40.751	346	195	6	20	355	17	362	3.45e-84	259
MS.gene08354.t1	AT3G11180	39.535	301	179	2	54	351	94	394	1.38e-75	239
MS.gene08354.t1	AT5G05600	35.976	328	203	3	31	351	38	365	3.47e-73	231

Showing 1 to 10 of 148 entries

Previous1 2 3 4 5…15Next

Find 69 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGGAATTGATTGCAA+GGG	0.620044	4.1:-17038410	None:intergenic
AACCCTCACTCCGACGGCTC+CGG	0.507522	4.1:+17039359	MS.gene08354:CDS
AATCAACATGGCATCATCTC+AGG	0.499386	4.1:+17038253	None:intergenic
AATCAGCTTAATGGAGTTGA+AGG	0.457519	4.1:+17039395	MS.gene08354:CDS
ACAAAATACAAAATAAGACA+AGG	0.680547	4.1:+17038843	MS.gene08354:CDS
ACCAAATTTGAAGCAGAAAT+TGG	0.176209	4.1:+17040065	MS.gene08354:CDS
ACCATCCTTAATCAGCTTAA+TGG	0.230605	4.1:+17039386	MS.gene08354:CDS
ACGAGCTCCGGTTGCGGGCA+TGG	0.404443	4.1:-17039326	None:intergenic
AGACAAACTTGGAGAGAATG+AGG	0.547939	4.1:+17040189	MS.gene08354:CDS
AGATTAAGAAAGATGGAGTT+TGG	0.278559	4.1:+17039423	MS.gene08354:CDS

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTTTGAAAGTCAAAAAC+GGG	-	chr4.1:17038428-17038447	None:intergenic	30.0%
ACAGGAAGCTTGAAAAAATT+TGG	-	chr4.1:17038813-17038832	None:intergenic	30.0%
AGATTAAGAAAGATGGAGTT+TGG	+	chr4.1:17039423-17039442	MS.gene08354:CDS	30.0%
AGTGATTAATAAACCCGAAA+TGG	+	chr4.1:17038325-17038344	MS.gene08354:CDS	30.0%
AGTTAATATTGGAGACATCA+TGG	+	chr4.1:17039478-17039497	MS.gene08354:CDS	30.0%
CAAGGTTTGAAAGTCAAAAA+CGG	-	chr4.1:17038429-17038448	None:intergenic	30.0%
CATGTGTTATGGTGTAATAA+TGG	+	chr4.1:17039722-17039741	MS.gene08354:intron	30.0%
GAGTTATTAAAAGGAAGATG+AGG	-	chr4.1:17039832-17039851	None:intergenic	30.0%
GGTTTCAGTAAACAAAGAAA+AGG	+	chr4.1:17040013-17040032	MS.gene08354:CDS	30.0%
GTAGAGAATATGTTTGATGA+TGG	+	chr4.1:17039272-17039291	MS.gene08354:CDS	30.0%

Showing 1 to 10 of 124 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	17038260	17040217	17038260	ID=MS.gene08354
chr4.1	mRNA	17038260	17040217	17038260	ID=MS.gene08354.t1;Parent=MS.gene08354
chr4.1	exon	17038260	17038514	17038260	ID=MS.gene08354.t1.exon1;Parent=MS.gene08354.t1
chr4.1	CDS	17038260	17038514	17038260	ID=cds.MS.gene08354.t1;Parent=MS.gene08354.t1
chr4.1	exon	17038756	17039000	17038756	ID=MS.gene08354.t1.exon2;Parent=MS.gene08354.t1
chr4.1	CDS	17038756	17039000	17038756	ID=cds.MS.gene08354.t1;Parent=MS.gene08354.t1
chr4.1	exon	17039178	17039502	17039178	ID=MS.gene08354.t1.exon3;Parent=MS.gene08354.t1
chr4.1	CDS	17039178	17039502	17039178	ID=cds.MS.gene08354.t1;Parent=MS.gene08354.t1
chr4.1	exon	17039975	17040217	17039975	ID=MS.gene08354.t1.exon4;Parent=MS.gene08354.t1
chr4.1	CDS	17039975	17040217	17039975	ID=cds.MS.gene08354.t1;Parent=MS.gene08354.t1

Gene Sequence

>MS.gene08354

ATGGCATCATCTCAGGTGGCTAATATCTTTGAGAGTACTCATTCAATTCTTGGTGTTATGGATGAAGTGATTAATAAACCCGAAATGGGAATACCAAAAATGTTTCTTCGCCCAGATAAAGAACCCTCAATCCTAACAAATGAAACCAATCCCTTGCAATCAATTCCCGTTTTTGACTTTCAAACCTTGATATGTGGTGACAATACTGAACTTGACAAGTTATTCTCAGCATGCAAAGATTGGGGTTTCTTCCAGGTTTATAAACTAGAGTTCAATTCGTGTTCATCTATCGCGTAGAAAAAAATTTGTGCGCATCAAATCACATCTCAAAAAATAGATATTTGAATATATATCTTAAAAATTGGTGTAACATAGTGACACAATGATTGAATATATGTGTACAAATTAAGTTCTCTAGTTAAGTTATTGTTGTTTTTGCATTTTTTTTTTTTATGGTGTACAAAATCATTACTGAAATTGATGCAATTATATGCAGGTGGTGAATCACGGTATTAGCTCTGAATTGCTTGAGAAGCTGAAATTTGAGATTCCAAATTTTTTCAAGCTTCCTGTTGAAGAGAAAACAAAATACAAAATAAGACAAGGAGATTTTCAAGGTTATGGAGCTGTCATTAGATGTGAAGGTCAAAAACTTGATTGGGGTGACAGATTCTTCATGATTACAAATCCTATTGCAAGAAGAAAGCCACATCTTTTTCCTCAACTCCCATCATCACTAAGGTGCTTATCATAATTTCATGTTTCTAATCTATCTAAAATGTTAATATAGTTTTAGATACAAAATTGTTCCATATGTAATTTTTATTCAACTTTGTGATGTGACAACTTTGTGATTTAAACCTAATTAGATACTATATATTATATATATAAATCTCATTTTTGTATGCATATGTGAAGGGATACCTTGGAGTCATATATCTTAGAATTGAAGAAACTTGGCATGACACTTTTTGAATTATTGGGAAAAGCCATAAAGATGGATATGAAGGAAGTAGAGAATATGTTTGATGATGGAAATCAATCAATAAGGATGACATACTATCCGCCATGCCCGCAACCGGAGCTCGTCGACGGCATCAACCCTCACTCCGACGGCTCCGGCATAACCATCCTTAATCAGCTTAATGGAGTTGAAGGACTAGAGATTAAGAAAGATGGAGTTTGGATTCCTGTGACCTTTCTTCCAGATGCTTTTGTAGTTAATATTGGAGACATCATGGAGGTTTGTCATTATTTTCTCTCATTTTCATACTTTTTTTTATTCTTCTTATTTTGACAATGAAATAAAGCACGTGGTGTATTGAACCAGGTCCTACTATACCTATTATATAAATTAATTTGATTCTTCGAATCAATTTATCAATATAAAAGTAGTATTTTCAATGAGTCGTGGGCGTTGTAATCATACCATTATTGTATCAAAAAGATAATGCTAAATCCACATGTGTTATGGTGTAATAATGGCATTATTTGTGGTGCCATTCAATATGCTCCTAAATAGCACATTTTTTATTGGAAACAGATTTTATTTGTCTACTACTACCCATGCCTCATCTTCCTTTTAATAACTCTCTTCTTAGGGTTTCATTAAAAAATGGAGTCTTAAACATGAACAAAAAAAAATCTACTACAAATTAAAACATGTCAAATAGTGTTTTTCATATCTTTAACTCATGTTTTGGGTGATTTTACAGATTCTAAGCAATGGGGTCTACTCTAGCATAGAGCACAGGGTTTCAGTAAACAAAGAAAAGGAGAGAGTTTCTGTTGCTATGTTCTTCAACACCAAATTTGAAGCAGAAATTGGACCAGCAAAGAGTTTGATAAGTTCTGAAAATCCACCTTTGTTCAAAAGCATGTTGATGGAAGAATACTCCAAATACTTTTTTTCAAGAAATCTAAATGGGAAGACAAACTTGGAGAGAATGAGGATTTAA

Protein sequence

>MS.gene08354.t1

MASSQVANIFESTHSILGVMDEVINKPEMGIPKMFLRPDKEPSILTNETNPLQSIPVFDFQTLICGDNTELDKLFSACKDWGFFQVVNHGISSELLEKLKFEIPNFFKLPVEEKTKYKIRQGDFQGYGAVIRCEGQKLDWGDRFFMITNPIARRKPHLFPQLPSSLRDTLESYILELKKLGMTLFELLGKAIKMDMKEVENMFDDGNQSIRMTYYPPCPQPELVDGINPHSDGSGITILNQLNGVEGLEIKKDGVWIPVTFLPDAFVVNIGDIMEILSNGVYSSIEHRVSVNKEKERVSVAMFFNTKFEAEIGPAKSLISSENPPLFKSMLMEEYSKYFFSRNLNGKTNLERMRI