Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08553.t1 | AES88750.2 | 61.3 | 238 | 32 | 4 | 1 | 178 | 1125 | 1362 | 6.60E-60 | 240.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08553.t1 | F4JXF9 | 46.5 | 155 | 75 | 2 | 24 | 178 | 1214 | 1360 | 2.6e-28 | 126.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08553.t1 | G7JSK5 | 61.3 | 238 | 32 | 4 | 1 | 178 | 1125 | 1362 | 4.8e-60 | 240.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049473 | MS.gene08553 | 0.80311 | 4.08E-49 | -1.69E-46 |
| MS.gene049824 | MS.gene08553 | 0.874601 | 5.95E-68 | -1.69E-46 |
| MS.gene049825 | MS.gene08553 | 0.922538 | 8.63E-89 | -1.69E-46 |
| MS.gene049873 | MS.gene08553 | 0.968399 | 1.27E-128 | -1.69E-46 |
| MS.gene051719 | MS.gene08553 | 0.801344 | 9.41E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene08553 | -0.813285 | 2.77E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene08553 | 0.820484 | 6.69E-53 | -1.69E-46 |
| MS.gene052584 | MS.gene08553 | 0.811353 | 7.30E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene08553 | 0.834966 | 2.21E-56 | -1.69E-46 |
| MS.gene053294 | MS.gene08553 | 0.814054 | 1.87E-51 | -1.69E-46 |
| MS.gene053599 | MS.gene08553 | 0.80294 | 4.42E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene08553 | 0.833762 | 4.43E-56 | -1.69E-46 |
| MS.gene055555 | MS.gene08553 | 0.823865 | 1.10E-53 | -1.69E-46 |
| MS.gene055778 | MS.gene08553 | 0.81143 | 7.03E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene08553 | 0.850469 | 1.66E-60 | -1.69E-46 |
| MS.gene056091 | MS.gene08553 | 0.854259 | 1.39E-61 | -1.69E-46 |
| MS.gene056642 | MS.gene08553 | 0.815871 | 7.40E-52 | -1.69E-46 |
| MS.gene057027 | MS.gene08553 | 0.804686 | 1.92E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene08553 | 0.82154 | 3.82E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene08553 | 0.836401 | 9.56E-57 | -1.69E-46 |
| MS.gene05953 | MS.gene08553 | 0.801255 | 9.82E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene08553 | 0.859192 | 4.90E-63 | -1.69E-46 |
| MS.gene059935 | MS.gene08553 | 0.800163 | 1.64E-48 | -1.69E-46 |
| MS.gene060429 | MS.gene08553 | 0.814377 | 1.59E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene08553 | -0.811319 | 7.43E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08553.t1 | MTR_4g061800 | 61.765 | 238 | 31 | 4 | 1 | 178 | 1134 | 1371 | 3.30e-77 | 250 |
| MS.gene08553.t1 | MTR_4g061700 | 60.084 | 238 | 35 | 5 | 1 | 178 | 1125 | 1362 | 2.46e-73 | 239 |
| MS.gene08553.t1 | MTR_5g023020 | 35.052 | 97 | 63 | 0 | 75 | 171 | 1363 | 1459 | 8.16e-16 | 74.7 |
| MS.gene08553.t1 | MTR_4g086290 | 35.577 | 104 | 66 | 1 | 75 | 178 | 1523 | 1625 | 1.33e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08553.t1 | AT5G60040 | 46.452 | 155 | 75 | 2 | 24 | 178 | 1214 | 1360 | 2.42e-35 | 130 |
| MS.gene08553.t1 | AT5G60040 | 60.577 | 104 | 41 | 0 | 75 | 178 | 1272 | 1375 | 4.68e-35 | 130 |
| MS.gene08553.t1 | AT4G35800 | 35.644 | 101 | 65 | 0 | 75 | 175 | 1364 | 1464 | 9.04e-17 | 77.8 |
| MS.gene08553.t1 | AT4G35800 | 35.644 | 101 | 65 | 0 | 75 | 175 | 1364 | 1464 | 9.04e-17 | 77.8 |
| MS.gene08553.t1 | AT3G57660 | 35.577 | 104 | 67 | 0 | 75 | 178 | 1551 | 1654 | 1.36e-13 | 68.6 |
| MS.gene08553.t1 | AT3G57660 | 35.577 | 104 | 67 | 0 | 75 | 178 | 1564 | 1667 | 1.36e-13 | 68.6 |
Find 36 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGATTCTTTCACAATAT+TGG | 0.204750 | 4.1:+38332025 | None:intergenic |
| AGTTCTTCTTCATACATATT+TGG | 0.208715 | 4.1:+38331340 | None:intergenic |
| AGCACACTTCTGCATTCTTT+AGG | 0.257185 | 4.1:+38331431 | None:intergenic |
| GCACACTTCTGCATTCTTTA+GGG | 0.279520 | 4.1:+38331432 | None:intergenic |
| CAATCACTCACTCCTTCAAT+TGG | 0.356642 | 4.1:+38330500 | None:intergenic |
| ATTCCAGTGCCTATATGAAT+AGG | 0.375180 | 4.1:+38330461 | None:intergenic |
| CTGATCTATGATACCATATC+TGG | 0.377324 | 4.1:+38330836 | None:intergenic |
| TAGCAGATATGATGACTGTC+AGG | 0.404647 | 4.1:-38330755 | MS.gene08553:CDS |
| TATCTGCTAGAAGCATAATA+TGG | 0.411824 | 4.1:+38330769 | None:intergenic |
| CGATGCATCCTTGCGTGGGA+AGG | 0.413910 | 4.1:-38330528 | MS.gene08553:CDS |
| GGAATTGAGGCTGCCAGATA+TGG | 0.414804 | 4.1:-38330849 | MS.gene08553:intron |
| ATCAACTAGGGTCAAGTCCT+TGG | 0.429586 | 4.1:-38330632 | MS.gene08553:intron |
| ATGGGTAAACCTATTCATAT+AGG | 0.444116 | 4.1:-38330470 | MS.gene08553:CDS |
| AGTGAGTGATTGCATAATCA+TGG | 0.458045 | 4.1:-38330489 | MS.gene08553:CDS |
| TATTATTGTTGCATCATCAC+TGG | 0.478651 | 4.1:-38331381 | MS.gene08553:CDS |
| AAGACATGGAATTCAAAAGA+TGG | 0.509948 | 4.1:-38330603 | MS.gene08553:CDS |
| TTCCATGTCTTGTCATTCCA+AGG | 0.514932 | 4.1:+38330615 | None:intergenic |
| AAACCTATTCATATAGGCAC+TGG | 0.516311 | 4.1:-38330464 | MS.gene08553:CDS |
| GCAGAAGTGTGCTTAGACGC+AGG | 0.516905 | 4.1:-38331421 | MS.gene08553:CDS |
| AGACGCAGGATGATATTGAC+TGG | 0.518296 | 4.1:-38331407 | MS.gene08553:CDS |
| GGGAAGGGTGACCCAATTGA+AGG | 0.525487 | 4.1:-38330512 | MS.gene08553:CDS |
| AATCACTCACTCCTTCAATT+GGG | 0.539564 | 4.1:+38330501 | None:intergenic |
| GATGCATCCTTGCGTGGGAA+GGG | 0.543229 | 4.1:-38330527 | MS.gene08553:CDS |
| GGACATGGGCATAATCGAAA+AGG | 0.545693 | 4.1:-38332066 | None:intergenic |
| CACACTTCTGCATTCTTTAG+GGG | 0.546653 | 4.1:+38331433 | None:intergenic |
| AGACATGGAATTCAAAAGAT+GGG | 0.582691 | 4.1:-38330602 | MS.gene08553:CDS |
| GTGAGTGATTGCATAATCAT+GGG | 0.585359 | 4.1:-38330488 | MS.gene08553:CDS |
| GTCCTTGGAATGACAAGACA+TGG | 0.589188 | 4.1:-38330617 | MS.gene08553:CDS |
| TGGGTCACCCTTCCCACGCA+AGG | 0.590838 | 4.1:+38330520 | None:intergenic |
| ATGGGCATAATCGAAAAGGC+AGG | 0.620316 | 4.1:-38332062 | MS.gene08553:CDS |
| CAGTATACAATGAAACAGCA+TGG | 0.633424 | 4.1:-38330810 | MS.gene08553:CDS |
| GACGCAGGATGATATTGACT+GGG | 0.634541 | 4.1:-38331406 | MS.gene08553:CDS |
| AGCAGATATGATGACTGTCA+GGG | 0.641689 | 4.1:-38330754 | MS.gene08553:intron |
| AAAACTGAAGTTGAAGCCAG+AGG | 0.675074 | 4.1:-38331991 | MS.gene08553:intron |
| TATAGGCACTGGAATGATCG+AGG | 0.686172 | 4.1:-38330453 | MS.gene08553:CDS |
| GAATGATCGAGGTCAAACAA+AGG | 0.700498 | 4.1:-38330442 | MS.gene08553:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAACAAATGA+TGG | - | chr4.1:38330888-38330907 | MS.gene08553:intron | 10.0% |
| !! | GTTATTTGAAAATTACTATA+AGG | - | chr4.1:38331773-38331792 | MS.gene08553:intron | 15.0% |
| !! | ATTAATGTGAAATGAAAATC+AGG | - | chr4.1:38331252-38331271 | MS.gene08553:intron | 20.0% |
| !! | ATTTATGTGATTTATCAACT+AGG | - | chr4.1:38331856-38331875 | MS.gene08553:intron | 20.0% |
| !! | CTTTCATAATATAAAGTGAT+GGG | - | chr4.1:38331191-38331210 | MS.gene08553:intron | 20.0% |
| !! | TCTTTCATAATATAAAGTGA+TGG | - | chr4.1:38331190-38331209 | MS.gene08553:intron | 20.0% |
| !! | TTCAATGATATGATTAGTAA+CGG | + | chr4.1:38331617-38331636 | None:intergenic | 20.0% |
| !! | TTCACATTAATCTGAATATA+CGG | + | chr4.1:38331243-38331262 | None:intergenic | 20.0% |
| !! | TTTATGTGATTTATCAACTA+GGG | - | chr4.1:38331857-38331876 | MS.gene08553:intron | 20.0% |
| !!! | AAAAAAGCTTTGAATATTAG+AGG | + | chr4.1:38330584-38330603 | None:intergenic | 20.0% |
| !!! | AATTGATTCTTTCACAATAT+TGG | + | chr4.1:38330479-38330498 | None:intergenic | 20.0% |
| !!! | CTTTGTATTTTATATTCAGA+TGG | - | chr4.1:38330800-38330819 | MS.gene08553:CDS | 20.0% |
| !!! | GACTTGTAATTTAAACTTTT+TGG | + | chr4.1:38331799-38331818 | None:intergenic | 20.0% |
| !!! | TGAGATTATTAAGTTGAAAA+AGG | + | chr4.1:38330687-38330706 | None:intergenic | 20.0% |
| !!! | TTTTGCAGAATGTTAAATTT+TGG | - | chr4.1:38330612-38330631 | MS.gene08553:CDS | 20.0% |
| ! | AAGTACATAACAAAATACAG+AGG | + | chr4.1:38330959-38330978 | None:intergenic | 25.0% |
| ! | AGTTCTTCTTCATACATATT+TGG | + | chr4.1:38331164-38331183 | None:intergenic | 25.0% |
| ! | ATATTTATCACAAACACACA+TGG | + | chr4.1:38331822-38331841 | None:intergenic | 25.0% |
| ! | TATTTATCACAAACACACAT+GGG | + | chr4.1:38331821-38331840 | None:intergenic | 25.0% |
| !! | TTGAATATTAGAGGCATAAA+TGG | + | chr4.1:38330575-38330594 | None:intergenic | 25.0% |
| !!! | CATTAGTTTTTCTTGATTGA+GGG | - | chr4.1:38331034-38331053 | MS.gene08553:intron | 25.0% |
| !!! | TGTACTTTTAATTTCCACTA+TGG | - | chr4.1:38330972-38330991 | MS.gene08553:intron | 25.0% |
| AAGACATGGAATTCAAAAGA+TGG | - | chr4.1:38331898-38331917 | MS.gene08553:intron | 30.0% | |
| AATCAGGAATATGATTAGAG+AGG | - | chr4.1:38331268-38331287 | MS.gene08553:intron | 30.0% | |
| AGACATGGAATTCAAAAGAT+GGG | - | chr4.1:38331899-38331918 | MS.gene08553:intron | 30.0% | |
| ATAGTCCAGTAAGGTATATA+AGG | + | chr4.1:38331007-38331026 | None:intergenic | 30.0% | |
| ATGGGTAAACCTATTCATAT+AGG | - | chr4.1:38332031-38332050 | MS.gene08553:CDS | 30.0% | |
| ATTAACAAGCAGCAATATAG+TGG | + | chr4.1:38331489-38331508 | None:intergenic | 30.0% | |
| GGATATTAAAAAGCTTCAAG+TGG | - | chr4.1:38330633-38330652 | MS.gene08553:intron | 30.0% | |
| TAAGGAAACATATACCATAG+TGG | + | chr4.1:38330989-38331008 | None:intergenic | 30.0% | |
| TATTATTGTTGCATCATCAC+TGG | - | chr4.1:38331120-38331139 | MS.gene08553:intron | 30.0% | |
| TGCAATAATATAGTCCAGTA+AGG | + | chr4.1:38331016-38331035 | None:intergenic | 30.0% | |
| TGTTTCCTTATATACCTTAC+TGG | - | chr4.1:38330999-38331018 | MS.gene08553:intron | 30.0% | |
| ! | AAAGAATCAATTTTGCAGAC+TGG | - | chr4.1:38330487-38330506 | MS.gene08553:CDS | 30.0% |
| ! | ACTTCTTATTTCTTCTTTGC+AGG | - | chr4.1:38330829-38330848 | MS.gene08553:CDS | 30.0% |
| ! | CTTCTTATTTCTTCTTTGCA+GGG | - | chr4.1:38330830-38330849 | MS.gene08553:CDS | 30.0% |
| ! | TATCTGCTAGAAGCATAATA+TGG | + | chr4.1:38331735-38331754 | None:intergenic | 30.0% |
| ! | TCATAATATAAAGTGATGGG+TGG | - | chr4.1:38331194-38331213 | MS.gene08553:intron | 30.0% |
| ! | TCTCAAAAATTTGCTTCCAT+CGG | - | chr4.1:38330702-38330721 | MS.gene08553:intron | 30.0% |
| !!! | GCATTAGTTTTTCTTGATTG+AGG | - | chr4.1:38331033-38331052 | MS.gene08553:intron | 30.0% |
| !!! | TCATTTTTTCTCATCAGCAA+GGG | - | chr4.1:38331548-38331567 | MS.gene08553:intron | 30.0% |
| !!! | TTCATTTTTTCTCATCAGCA+AGG | - | chr4.1:38331547-38331566 | MS.gene08553:intron | 30.0% |
| AAACCTATTCATATAGGCAC+TGG | - | chr4.1:38332037-38332056 | MS.gene08553:CDS | 35.0% | |
| AAAGAGGTTATGGCAATTGA+AGG | - | chr4.1:38331575-38331594 | MS.gene08553:intron | 35.0% | |
| AAGAGGTTATGGCAATTGAA+GGG | - | chr4.1:38331576-38331595 | MS.gene08553:intron | 35.0% | |
| AATCACTCACTCCTTCAATT+GGG | + | chr4.1:38332003-38332022 | None:intergenic | 35.0% | |
| AGTGAGTGATTGCATAATCA+TGG | - | chr4.1:38332012-38332031 | MS.gene08553:CDS | 35.0% | |
| ATTCCAGTGCCTATATGAAT+AGG | + | chr4.1:38332043-38332062 | None:intergenic | 35.0% | |
| ATTGAACTGATGCACATTCT+GGG | - | chr4.1:38331631-38331650 | MS.gene08553:intron | 35.0% | |
| CAATTGCCATAACCTCTTTA+AGG | + | chr4.1:38331574-38331593 | None:intergenic | 35.0% | |
| CAGTATACAATGAAACAGCA+TGG | - | chr4.1:38331691-38331710 | MS.gene08553:intron | 35.0% | |
| CTGATCTATGATACCATATC+TGG | + | chr4.1:38331668-38331687 | None:intergenic | 35.0% | |
| GTGAGTGATTGCATAATCAT+GGG | - | chr4.1:38332013-38332032 | MS.gene08553:CDS | 35.0% | |
| GTTGAAAAAGGAGTTCACTT+CGG | + | chr4.1:38330675-38330694 | None:intergenic | 35.0% | |
| ! | GTTGTCTGTGTATGCTTTTA+AGG | - | chr4.1:38331398-38331417 | MS.gene08553:CDS | 35.0% |
| !!! | GATACAGTGTTTGTTTTGTC+TGG | - | chr4.1:38330777-38330796 | MS.gene08553:CDS | 35.0% |
| AAAACTGAAGTTGAAGCCAG+AGG | - | chr4.1:38330510-38330529 | MS.gene08553:CDS | 40.0% | |
| AAGTACACATTACTGCGGAA+AGG | - | chr4.1:38330924-38330943 | MS.gene08553:intron | 40.0% | |
| AATACCTTCACTACAACCGA+TGG | + | chr4.1:38330721-38330740 | None:intergenic | 40.0% | |
| AGCACACTTCTGCATTCTTT+AGG | + | chr4.1:38331073-38331092 | None:intergenic | 40.0% | |
| AGCAGATATGATGACTGTCA+GGG | - | chr4.1:38331747-38331766 | MS.gene08553:intron | 40.0% | |
| AGTACACATTACTGCGGAAA+GGG | - | chr4.1:38330925-38330944 | MS.gene08553:intron | 40.0% | |
| CAATCACTCACTCCTTCAAT+TGG | + | chr4.1:38332004-38332023 | None:intergenic | 40.0% | |
| CACACTTCTGCATTCTTTAG+GGG | + | chr4.1:38331071-38331090 | None:intergenic | 40.0% | |
| CATTGAACTGATGCACATTC+TGG | - | chr4.1:38331630-38331649 | MS.gene08553:intron | 40.0% | |
| GAATGATCGAGGTCAAACAA+AGG | - | chr4.1:38332059-38332078 | MS.gene08553:CDS | 40.0% | |
| GCACACTTCTGCATTCTTTA+GGG | + | chr4.1:38331072-38331091 | None:intergenic | 40.0% | |
| TAGCAGATATGATGACTGTC+AGG | - | chr4.1:38331746-38331765 | MS.gene08553:intron | 40.0% | |
| TATGGCAATTGAAGGGTTGA+TGG | - | chr4.1:38331583-38331602 | MS.gene08553:intron | 40.0% | |
| TTCCATGTCTTGTCATTCCA+AGG | + | chr4.1:38331889-38331908 | None:intergenic | 40.0% | |
| ! | ATGGCAATTGAAGGGTTGAT+GGG | - | chr4.1:38331584-38331603 | MS.gene08553:intron | 40.0% |
| ! | CTGAGAAGTACACATTACTG+CGG | - | chr4.1:38330919-38330938 | MS.gene08553:intron | 40.0% |
| ! | GTCCCGTCATGTTTTTCTTT+GGG | + | chr4.1:38331310-38331329 | None:intergenic | 40.0% |
| ! | TGTCCCGTCATGTTTTTCTT+TGG | + | chr4.1:38331311-38331330 | None:intergenic | 40.0% |
| AGACGCAGGATGATATTGAC+TGG | - | chr4.1:38331094-38331113 | MS.gene08553:intron | 45.0% | |
| AGAGAGGAGATTATCCTGCT+GGG | - | chr4.1:38331284-38331303 | MS.gene08553:intron | 45.0% | |
| ATCAACTAGGGTCAAGTCCT+TGG | - | chr4.1:38331869-38331888 | MS.gene08553:intron | 45.0% | |
| ATGGGCATAATCGAAAAGGC+AGG | - | chr4.1:38330439-38330458 | MS.gene08553:CDS | 45.0% | |
| CAAGATGTACTCTTCACCTC+TGG | + | chr4.1:38330529-38330548 | None:intergenic | 45.0% | |
| CAAGGGCCTTAAAGAGGTTA+TGG | - | chr4.1:38331565-38331584 | MS.gene08553:intron | 45.0% | |
| CTGTAAGATTAAGGGGGACT+GGG | - | chr4.1:38331339-38331358 | MS.gene08553:intron | 45.0% | |
| GGCCCAAAGAAAAACATGAC+GGG | - | chr4.1:38331305-38331324 | MS.gene08553:intron | 45.0% | |
| GGGCCCAAAGAAAAACATGA+CGG | - | chr4.1:38331304-38331323 | MS.gene08553:intron | 45.0% | |
| GTCCTTGGAATGACAAGACA+TGG | - | chr4.1:38331884-38331903 | MS.gene08553:intron | 45.0% | |
| TAGAGAGGAGATTATCCTGC+TGG | - | chr4.1:38331283-38331302 | MS.gene08553:intron | 45.0% | |
| TGTAAGATTAAGGGGGACTG+GGG | - | chr4.1:38331340-38331359 | MS.gene08553:intron | 45.0% | |
| TTTGTGTGTGTGTGTGTGTG+TGG | - | chr4.1:38330739-38330758 | MS.gene08553:intron | 45.0% | |
| ! | AAAAACATGACGGGACAGTC+GGG | - | chr4.1:38331314-38331333 | MS.gene08553:intron | 45.0% |
| ! | AGTCGGGTGCTGTAAGATTA+AGG | - | chr4.1:38331330-38331349 | MS.gene08553:intron | 45.0% |
| ! | GAAAAACATGACGGGACAGT+CGG | - | chr4.1:38331313-38331332 | MS.gene08553:intron | 45.0% |
| ! | GACGCAGGATGATATTGACT+GGG | - | chr4.1:38331095-38331114 | MS.gene08553:intron | 45.0% |
| ! | GACTGGGGTTAGTGAAAACT+AGG | - | chr4.1:38331355-38331374 | MS.gene08553:CDS | 45.0% |
| ! | GATGCACATTCTGGGAATTG+AGG | - | chr4.1:38331639-38331658 | MS.gene08553:intron | 45.0% |
| ! | GTCGGGTGCTGTAAGATTAA+GGG | - | chr4.1:38331331-38331350 | MS.gene08553:intron | 45.0% |
| ! | TCGGGTGCTGTAAGATTAAG+GGG | - | chr4.1:38331332-38331351 | MS.gene08553:intron | 45.0% |
| ! | TTTTCGATGCATCCTTGCGT+GGG | - | chr4.1:38331969-38331988 | MS.gene08553:intron | 45.0% |
| !! | TATAGGCACTGGAATGATCG+AGG | - | chr4.1:38332048-38332067 | MS.gene08553:CDS | 45.0% |
| !!! | TTTTTATTTTTTTTATTTCT+AGG | + | chr4.1:38330881-38330900 | None:intergenic | 5.0% |
| AAGCTTCAAGTGGAACCCCA+AGG | - | chr4.1:38330643-38330662 | MS.gene08553:intron | 50.0% | |
| AGCTTCAAGTGGAACCCCAA+GGG | - | chr4.1:38330644-38330663 | MS.gene08553:intron | 50.0% | |
| CATCAGCAAGGGCCTTAAAG+AGG | - | chr4.1:38331559-38331578 | MS.gene08553:intron | 50.0% | |
| GCTGTAAGATTAAGGGGGAC+TGG | - | chr4.1:38331338-38331357 | MS.gene08553:intron | 50.0% | |
| GGAATTGAGGCTGCCAGATA+TGG | - | chr4.1:38331652-38331671 | MS.gene08553:intron | 50.0% | |
| TTCACTTCGGCTAGACCCTT+GGG | + | chr4.1:38330662-38330681 | None:intergenic | 50.0% | |
| ! | CGGGTGCTGTAAGATTAAGG+GGG | - | chr4.1:38331333-38331352 | MS.gene08553:intron | 50.0% |
| ! | CTTTTCGATGCATCCTTGCG+TGG | - | chr4.1:38331968-38331987 | MS.gene08553:intron | 50.0% |
| ! | GCTTCCATCGGTTGTAGTGA+AGG | - | chr4.1:38330714-38330733 | MS.gene08553:intron | 50.0% |
| ! | TGTTTTTCTTTGGGCCCAGC+AGG | + | chr4.1:38331301-38331320 | None:intergenic | 50.0% |
| GATGCATCCTTGCGTGGGAA+GGG | - | chr4.1:38331974-38331993 | MS.gene08553:intron | 55.0% | |
| GGGAAGGGTGACCCAATTGA+AGG | - | chr4.1:38331989-38332008 | MS.gene08553:intron | 55.0% | |
| GTTCACTTCGGCTAGACCCT+TGG | + | chr4.1:38330663-38330682 | None:intergenic | 55.0% | |
| TCACTTCGGCTAGACCCTTG+GGG | + | chr4.1:38330661-38330680 | None:intergenic | 55.0% | |
| ! | GCAGAAGTGTGCTTAGACGC+AGG | - | chr4.1:38331080-38331099 | MS.gene08553:intron | 55.0% |
| CGATGCATCCTTGCGTGGGA+AGG | - | chr4.1:38331973-38331992 | MS.gene08553:intron | 60.0% | |
| TGGGTCACCCTTCCCACGCA+AGG | + | chr4.1:38331984-38332003 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 38330439 | 38332084 | 38330439 | ID=MS.gene08553 |
| chr4.1 | mRNA | 38330439 | 38332084 | 38330439 | ID=MS.gene08553.t1;Parent=MS.gene08553 |
| chr4.1 | exon | 38331992 | 38332084 | 38331992 | ID=MS.gene08553.t1.exon1;Parent=MS.gene08553.t1 |
| chr4.1 | CDS | 38331992 | 38332084 | 38331992 | ID=cds.MS.gene08553.t1;Parent=MS.gene08553.t1 |
| chr4.1 | exon | 38331355 | 38331483 | 38331355 | ID=MS.gene08553.t1.exon2;Parent=MS.gene08553.t1 |
| chr4.1 | CDS | 38331355 | 38331483 | 38331355 | ID=cds.MS.gene08553.t1;Parent=MS.gene08553.t1 |
| chr4.1 | exon | 38330755 | 38330862 | 38330755 | ID=MS.gene08553.t1.exon3;Parent=MS.gene08553.t1 |
| chr4.1 | CDS | 38330755 | 38330862 | 38330755 | ID=cds.MS.gene08553.t1;Parent=MS.gene08553.t1 |
| chr4.1 | exon | 38330439 | 38330645 | 38330439 | ID=MS.gene08553.t1.exon4;Parent=MS.gene08553.t1 |
| chr4.1 | CDS | 38330439 | 38330645 | 38330439 | ID=cds.MS.gene08553.t1;Parent=MS.gene08553.t1 |
| Gene Sequence |
| Protein sequence |
