AlfalfaGEDB | MS.gene08634

M. sativa cultivar XinJiangDaYe / MS.gene08634

KEGG: K09872
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0015267 GO:0016020 GO:0022803 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00230.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08634.t1	XP_003606383.1	98.2	285	5	0	1	285	1	285	5.80E-159	570.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08634.t1	Q9ATM4	86.1	287	38	2	1	285	1	287	9.5e-142	504.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08634.t1	G7JPC5	98.2	285	5	0	1	285	1	285	4.2e-159	570.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049757	MS.gene08634	-0.822823	1.93E-53	-1.69E-46
MS.gene050133	MS.gene08634	0.950042	3.72E-108	-1.69E-46
MS.gene050426	MS.gene08634	0.823584	1.28E-53	-1.69E-46
MS.gene051552	MS.gene08634	0.820869	5.46E-53	-1.69E-46
MS.gene052469	MS.gene08634	-0.867067	1.80E-65	-1.69E-46
MS.gene054107	MS.gene08634	-0.839802	1.27E-57	-1.69E-46
MS.gene054884	MS.gene08634	0.806814	6.85E-50	-1.69E-46
MS.gene055159	MS.gene08634	0.815025	1.14E-51	-1.69E-46
MS.gene055539	MS.gene08634	-0.810749	9.87E-51	-1.69E-46
MS.gene05556	MS.gene08634	-0.803365	3.61E-49	-1.69E-46
MS.gene055744	MS.gene08634	-0.801716	7.90E-49	-1.69E-46
MS.gene056633	MS.gene08634	-0.80009	1.70E-48	-1.69E-46
MS.gene058418	MS.gene08634	0.80785	4.13E-50	-1.69E-46
MS.gene059717	MS.gene08634	-0.829624	4.64E-55	-1.69E-46
MS.gene060087	MS.gene08634	0.803436	3.49E-49	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08634.t1	MTR_4g059390	98.246	285	5	0	1	285	1	285	0.0	571
MS.gene08634.t1	MTR_2g094270	85.017	287	41	2	1	285	1	287	1.31e-180	499
MS.gene08634.t1	MTR_7g101190	80.702	285	55	0	1	285	1	285	2.12e-173	480
MS.gene08634.t1	MTR_3g118010	77.695	269	54	1	16	284	14	276	1.50e-155	435
MS.gene08634.t1	MTR_2g094270	84.000	250	38	2	1	248	1	250	2.06e-154	432
MS.gene08634.t1	MTR_4g059390	99.010	202	2	0	1	202	1	202	6.67e-147	410
MS.gene08634.t1	MTR_8g098375	67.293	266	80	2	12	276	25	284	7.04e-132	375
MS.gene08634.t1	MTR_5g082070	68.015	272	80	3	7	277	23	288	4.96e-131	373
MS.gene08634.t1	MTR_5g010150	68.165	267	78	2	12	277	25	285	7.32e-131	373
MS.gene08634.t1	MTR_4g415300	66.171	269	85	1	9	277	26	288	1.22e-130	372
MS.gene08634.t1	MTR_3g070210	65.217	276	89	2	3	277	19	288	2.71e-130	371
MS.gene08634.t1	MTR_1g095070	83.163	196	33	0	89	284	23	218	1.40e-119	342
MS.gene08634.t1	MTR_3g070210	66.000	250	78	2	3	251	19	262	2.36e-116	336
MS.gene08634.t1	MTR_1g095070	84.375	160	25	0	89	248	23	182	8.32e-97	283
MS.gene08634.t1	MTR_8g098375	62.085	211	71	3	12	219	25	229	7.83e-90	267
MS.gene08634.t1	MTR_3g070210	64.179	201	65	2	3	202	19	213	4.05e-88	261
MS.gene08634.t1	MTR_5g010150	67.188	192	56	2	12	202	25	210	4.99e-87	259
MS.gene08634.t1	MTR_4g415300	64.948	194	62	1	9	202	26	213	5.54e-87	259
MS.gene08634.t1	MTR_2g101370	38.494	239	125	6	39	273	20	240	3.52e-39	137
MS.gene08634.t1	MTR_8g013680	39.224	232	119	6	39	266	19	232	3.64e-36	130
MS.gene08634.t1	MTR_5g012810	37.712	236	130	5	39	273	19	238	1.03e-34	126
MS.gene08634.t1	MTR_1g077540	36.052	233	133	6	39	270	21	238	3.87e-32	119
MS.gene08634.t1	MTR_7g103030	33.600	250	149	6	30	278	12	245	1.22e-31	118
MS.gene08634.t1	MTR_1g115405	35.366	246	135	7	30	270	12	238	2.74e-31	117
MS.gene08634.t1	MTR_4g063090	33.610	241	135	7	44	278	26	247	2.51e-30	114
MS.gene08634.t1	MTR_6g069040	36.179	246	135	6	29	270	11	238	4.45e-30	114
MS.gene08634.t1	MTR_1g006590	33.462	260	134	11	30	278	10	241	3.47e-29	111
MS.gene08634.t1	MTR_1g006490	34.263	251	130	11	30	271	10	234	4.28e-28	108
MS.gene08634.t1	MTR_7g023350	34.728	239	132	7	39	272	21	240	4.75e-27	106
MS.gene08634.t1	MTR_2g060360	34.426	244	138	8	30	270	11	235	4.39e-23	95.5
MS.gene08634.t1	MTR_5g079570	30.208	192	114	5	82	269	73	248	2.69e-19	85.5
MS.gene08634.t1	MTR_8g087710	30.222	225	132	7	37	259	37	238	5.83e-19	84.7
MS.gene08634.t1	MTR_4g075570	26.641	259	156	8	22	259	27	272	9.05e-18	82.4
MS.gene08634.t1	MTR_4g075590	27.309	249	154	8	27	261	25	260	1.11e-17	81.6
MS.gene08634.t1	MTR_5g063930	29.381	194	124	4	78	269	65	247	1.40e-17	80.9
MS.gene08634.t1	MTR_2g017660	29.487	234	138	7	39	269	39	248	2.81e-17	80.1
MS.gene08634.t1	MTR_4g084880	30.220	182	107	4	82	259	71	236	4.35e-17	79.7
MS.gene08634.t1	MTR_3g008920	28.646	192	117	5	82	269	59	234	3.56e-16	77.0
MS.gene08634.t1	MTR_8g087720	28.452	239	143	7	36	271	35	248	7.75e-16	75.9
MS.gene08634.t1	MTR_2g104940	28.899	218	131	7	43	259	84	278	1.70e-15	75.5
MS.gene08634.t1	MTR_7g010650	27.753	227	134	6	37	259	35	235	2.64e-15	74.7
MS.gene08634.t1	MTR_4g006730	27.206	272	153	9	21	282	68	304	2.71e-15	75.1
MS.gene08634.t1	MTR_2g017620	28.444	225	136	6	37	259	22	223	6.78e-15	73.2
MS.gene08634.t1	MTR_2g017620	28.444	225	136	6	37	259	36	237	8.40e-15	73.2
MS.gene08634.t1	MTR_2g017590	29.412	238	140	8	37	271	34	246	1.34e-14	72.4
MS.gene08634.t1	MTR_4g006630	28.889	180	115	4	80	259	20	186	1.84e-13	68.6
MS.gene08634.t1	MTR_4g006730	28.889	180	115	4	80	259	20	186	1.84e-13	68.6
MS.gene08634.t1	MTR_2g017610	30.928	194	113	7	82	271	72	248	2.12e-13	68.9
MS.gene08634.t1	MTR_1g097840	26.506	249	160	7	36	283	71	297	2.94e-13	68.9
MS.gene08634.t1	MTR_2g017570	29.534	193	117	6	82	271	72	248	4.73e-13	68.2
MS.gene08634.t1	MTR_2g017620	30.588	170	102	4	92	259	1	156	9.15e-13	65.9
MS.gene08634.t1	MTR_1g070385	26.050	238	149	6	36	271	59	271	3.66e-12	67.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene08634.t1	AT2G37170	79.649	285	56	1	1	285	44	326	1.30e-168	470
MS.gene08634.t1	AT5G60660	79.152	283	59	0	1	283	1	283	1.43e-168	468
MS.gene08634.t1	AT2G37170	79.649	285	56	1	1	285	1	283	5.46e-168	467
MS.gene08634.t1	AT2G37180	78.596	285	59	1	1	285	1	283	3.79e-165	459
MS.gene08634.t1	AT3G53420	77.895	285	63	0	1	285	1	285	1.14e-163	456
MS.gene08634.t1	AT3G53420	77.895	285	63	0	1	285	1	285	1.14e-163	456
MS.gene08634.t1	AT4G35100	77.224	281	57	2	6	285	4	278	4.50e-159	444
MS.gene08634.t1	AT4G35100	77.224	281	57	2	6	285	4	278	4.50e-159	444
MS.gene08634.t1	AT2G39010	74.296	284	72	1	1	284	1	283	9.75e-159	443
MS.gene08634.t1	AT3G54820	74.648	284	71	1	1	284	1	283	4.15e-158	442
MS.gene08634.t1	AT2G16850	76.344	279	59	2	6	284	4	275	5.01e-155	434
MS.gene08634.t1	AT4G00430	67.897	271	81	1	7	277	21	285	9.23e-133	377
MS.gene08634.t1	AT2G45960	68.182	264	78	1	14	277	27	284	3.10e-130	371
MS.gene08634.t1	AT4G23400	67.669	266	80	1	12	277	26	285	3.70e-124	356
MS.gene08634.t1	AT1G01620	69.084	262	75	1	16	277	29	284	5.36e-124	355
MS.gene08634.t1	AT3G61430	67.424	264	80	1	14	277	27	284	1.94e-122	351
MS.gene08634.t1	AT3G61430	67.424	264	80	1	14	277	27	284	1.94e-122	351
MS.gene08634.t1	AT2G45960	70.213	235	64	1	14	248	27	255	2.91e-117	338
MS.gene08634.t1	AT2G45960	70.213	235	64	1	14	248	27	255	3.73e-116	336
MS.gene08634.t1	AT1G01620	73.892	203	53	0	75	277	10	212	2.23e-107	310
MS.gene08634.t1	AT2G39010	72.772	202	54	1	1	202	1	201	4.78e-106	307
MS.gene08634.t1	AT4G00430	67.692	195	57	1	12	206	26	214	6.80e-90	266
MS.gene08634.t1	AT3G16240	39.669	242	120	7	39	274	19	240	5.27e-37	132
MS.gene08634.t1	AT5G47450	37.959	245	124	7	36	273	16	239	4.55e-36	129
MS.gene08634.t1	AT3G26520	35.510	245	136	8	30	270	13	239	4.81e-33	122
MS.gene08634.t1	AT1G73190	36.290	248	135	7	30	270	15	246	1.06e-32	121
MS.gene08634.t1	AT4G17340	36.842	247	118	7	39	273	19	239	2.81e-32	119
MS.gene08634.t1	AT4G01470	34.677	248	138	6	31	273	13	241	8.54e-32	118
MS.gene08634.t1	AT1G17810	35.484	248	137	7	30	270	15	246	5.03e-31	117
MS.gene08634.t1	AT2G36830	34.156	243	136	7	30	267	12	235	1.21e-30	115
MS.gene08634.t1	AT2G25810	35.081	248	129	11	30	270	10	232	3.20e-26	103
MS.gene08634.t1	AT3G47440	31.780	236	138	7	39	270	23	239	4.25e-24	98.6
MS.gene08634.t1	AT4G19030	28.030	264	159	8	3	259	22	261	3.47e-17	80.1
MS.gene08634.t1	AT1G31885	28.794	257	148	8	24	273	34	262	4.04e-17	80.5
MS.gene08634.t1	AT5G37820	28.571	189	121	4	82	269	77	252	6.96e-15	73.6
MS.gene08634.t1	AT5G37810	27.128	188	125	3	82	269	77	252	8.38e-15	73.2
MS.gene08634.t1	AT5G37820	28.571	189	121	4	82	269	113	288	1.05e-14	73.6
MS.gene08634.t1	AT1G31885	29.557	203	123	6	78	273	19	208	4.76e-14	70.9
MS.gene08634.t1	AT2G34390	26.616	263	155	10	15	269	31	263	5.27e-14	71.2
MS.gene08634.t1	AT4G10380	26.877	253	155	9	36	282	75	303	7.32e-14	70.9
MS.gene08634.t1	AT2G34390	28.141	199	123	5	78	269	36	221	1.83e-13	68.9
MS.gene08634.t1	AT3G06100	28.205	234	141	8	39	269	46	255	4.53e-12	65.5
MS.gene08634.t1	AT4G18910	25.483	259	171	6	5	259	18	258	6.47e-12	65.1
MS.gene08634.t1	AT3G06100	29.185	233	134	10	42	269	1	207	7.69e-11	61.2

Find 92 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGGGTATTGCTTGGGCTTT+TGG	0.189425	4.1:-39226985	MS.gene08634:CDS
CTGTGATGGTGTTGGAATTT+TGG	0.191069	4.1:-39227004	MS.gene08634:CDS
TCTACAACGACGGCAAAATT+TGG	0.232790	4.1:-39226079	MS.gene08634:CDS
GAAGGATCCAAGAGCTTTAA+TGG	0.276736	4.1:+39225709	None:intergenic
GTGATGAACAGTGGATATTC+TGG	0.300046	4.1:-39225796	MS.gene08634:intron
ATCAACCCTGCCGTGACATT+CGG	0.336178	4.1:-39226579	MS.gene08634:CDS
ATTAACCCGGCAAGAAGTTT+CGG	0.346372	4.1:-39226113	MS.gene08634:CDS
TTCTGGGTTGGTCCAATGAT+TGG	0.360668	4.1:-39225779	MS.gene08634:CDS
AAAGCATACTTTGACAGATA+TGG	0.361824	4.1:-39226453	MS.gene08634:CDS
TTAAAGCTCTTGGATCCTTC+AGG	0.374939	4.1:-39225706	MS.gene08634:CDS
CAGTCAGTACCACCAGCTTT+AGG	0.379125	4.1:+39227024	None:intergenic
ACGGAAGGTGTCCTTGATTA+GGG	0.379672	4.1:-39226544	MS.gene08634:CDS
GACGGAAGGTGTCCTTGATT+AGG	0.381530	4.1:-39226545	MS.gene08634:CDS
TTAATACCGGTGCCGGTAAT+CGG	0.383368	4.1:+39226131	None:intergenic
TACAACAAAGGCACAGCTTT+AGG	0.394600	4.1:-39226402	MS.gene08634:CDS
GCTGATCCGAAACTTCTTGC+CGG	0.395043	4.1:+39226107	None:intergenic
GCCACAGCAGCTCCAATCAT+TGG	0.399751	4.1:+39225767	None:intergenic
TCAACCCTGCCGTGACATTC+GGG	0.401248	4.1:-39226578	MS.gene08634:CDS
TACTGCACCGCCGGTATCTC+TGG	0.401254	4.1:-39226940	MS.gene08634:intron
GAGTCCCTAGCGTTCCTCTT+AGG	0.403026	4.1:+39226324	None:intergenic
CTACAACGACGGCAAAATTT+GGG	0.406415	4.1:-39226078	MS.gene08634:CDS
GGTTCAGCCATTAAAGCTCT+TGG	0.411321	4.1:-39225716	MS.gene08634:CDS
TAATACCGGTGCCGGTAATC+GGG	0.412842	4.1:+39226132	None:intergenic
ATGATTGGAGCTGCTGTGGC+TGG	0.418679	4.1:-39225764	MS.gene08634:CDS
TGGTTAAAACAGTGACATAA+AGG	0.426278	4.1:+39227073	None:intergenic
CGGCAAAATTTGGGATGATC+AGG	0.438644	4.1:-39226069	MS.gene08634:intron
TTGGAAACCTTTGGCAAGTC+CGG	0.439461	4.1:+39226476	None:intergenic
TTGGCTACTATCCCGATTAC+CGG	0.446732	4.1:-39226143	MS.gene08634:CDS
TCTATCAATGGTGCTGGAGG+TGG	0.446868	4.1:+39227165	None:intergenic
CTGGTGGCTATAACCAATAA+TGG	0.454400	4.1:+39227053	None:intergenic
GCTTTAGGTGCTGAAATCAT+TGG	0.457763	4.1:-39226387	MS.gene08634:CDS
ACTTCTTGCCGGGTTAATAC+CGG	0.464164	4.1:+39226118	None:intergenic
ATTCATGATGGCTACAACAA+AGG	0.473294	4.1:-39226414	MS.gene08634:CDS
ATGGTGCTGGAGGTGGGTCT+TGG	0.480203	4.1:+39227172	None:intergenic
TGATGAACAGTGGATATTCT+GGG	0.485567	4.1:-39225795	MS.gene08634:intron
CTGAACCTCTTAGAATGTAT+TGG	0.489928	4.1:+39225732	None:intergenic
TACATGGCAGCACAGTGTGC+CGG	0.490463	4.1:-39226513	MS.gene08634:CDS
CTGATCCGAAACTTCTTGCC+GGG	0.491559	4.1:+39226108	None:intergenic
ATCCTTGTTTACTGCACCGC+CGG	0.495855	4.1:-39226949	MS.gene08634:CDS
TGCCGGGTTAATACCGGTGC+CGG	0.514335	4.1:+39226124	None:intergenic
GCCGGCGCAATCTGTGGTAC+CGG	0.516181	4.1:-39226495	MS.gene08634:CDS
CGTGACATTCGGGCTATTCG+TGG	0.516571	4.1:-39226568	MS.gene08634:CDS
AGCTCCTCAACATCTATCAA+TGG	0.522427	4.1:+39227153	None:intergenic
TCAACATCTATCAATGGTGC+TGG	0.524124	4.1:+39227159	None:intergenic
GTAAAACACTGCCCTAATCA+AGG	0.525985	4.1:+39226533	None:intergenic
CTGATCCTAAGAGGAACGCT+AGG	0.529650	4.1:-39226329	MS.gene08634:CDS
TACCACCAATACATTCTAAG+AGG	0.529657	4.1:-39225737	MS.gene08634:CDS
TCCAATGATTGGAGCTGCTG+TGG	0.531304	4.1:-39225768	MS.gene08634:CDS
GTAGCCATCATGAATAAAGT+TGG	0.531597	4.1:+39226422	None:intergenic
GGTGCCAACTTTATTCATGA+TGG	0.535166	4.1:-39226426	MS.gene08634:CDS
TTATAGCATACCAGAGATAC+CGG	0.539251	4.1:+39226930	None:intergenic
CTATCAATGGTGCTGGAGGT+GGG	0.552912	4.1:+39227166	None:intergenic
AATAGCCCGAATGTCACGGC+AGG	0.553742	4.1:+39226573	None:intergenic
ATGAAAACAGCAAATCCAAT+GGG	0.555341	4.1:+39226173	None:intergenic
CACCAGTCTGATCCTAAAGC+TGG	0.557436	4.1:-39227036	MS.gene08634:CDS
TAATTAAGCATTGCTCCTGA+AGG	0.559103	4.1:+39225691	None:intergenic
AACCTCTTAGAATGTATTGG+TGG	0.561973	4.1:+39225735	None:intergenic
CGGGCTATTCGTGGGACGGA+AGG	0.562748	4.1:-39226559	MS.gene08634:CDS
GGTACTGACTGTGATGGTGT+TGG	0.572709	4.1:-39227012	MS.gene08634:CDS
ACAGCAAATCCAATGGGAAG+TGG	0.574194	4.1:+39226179	None:intergenic
TCTCTGCCACTGATCCTAAG+AGG	0.575062	4.1:-39226338	MS.gene08634:CDS
AGCACCATTGATAGATGTTG+AGG	0.575497	4.1:-39227157	MS.gene08634:CDS
TACCGGCGGTGCAGTAAACA+AGG	0.576199	4.1:+39226947	None:intergenic
GATGTTGAGGTTCAAGAACA+AGG	0.576725	4.1:-39227216	MS.gene08634:CDS
CAGTGTGCCGGCGCAATCTG+TGG	0.577018	4.1:-39226501	MS.gene08634:CDS
TTTGCCGTCGTTGTAGATCA+CGG	0.578627	4.1:+39226085	None:intergenic
CACGAATAGCCCGAATGTCA+CGG	0.582521	4.1:+39226569	None:intergenic
ATTATATGCTTACAGGAACA+TGG	0.583004	4.1:+39226301	None:intergenic
CAATATGGCTAAAGATGTTG+AGG	0.583700	4.1:-39227229	None:intergenic
AGCGTTCCTCTTAGGATCAG+TGG	0.589665	4.1:+39226332	None:intergenic
ACATCTATCAATGGTGCTGG+AGG	0.589837	4.1:+39227162	None:intergenic
TACCGGCACCGGTATTAACC+CGG	0.590468	4.1:-39226126	MS.gene08634:CDS
TGTGGTACCGGACTTGCCAA+AGG	0.598591	4.1:-39226483	MS.gene08634:CDS
CATGAAAACAGCAAATCCAA+TGG	0.600094	4.1:+39226172	None:intergenic
TACTTTGACAGATATGGAGG+TGG	0.607215	4.1:-39226447	MS.gene08634:CDS
GTGACATTCGGGCTATTCGT+GGG	0.608893	4.1:-39226567	MS.gene08634:CDS
CACCAGCTTTAGGATCAGAC+TGG	0.622507	4.1:+39227034	None:intergenic
TCCGGTACCACAGATTGCGC+CGG	0.626783	4.1:+39226494	None:intergenic
TCAGCCGTGATCTACAACGA+CGG	0.628333	4.1:-39226089	MS.gene08634:CDS
GACAGTGTAGACAAGAACAA+AGG	0.629321	4.1:+39226362	None:intergenic
GCATACTTTGACAGATATGG+AGG	0.633916	4.1:-39226450	MS.gene08634:CDS
CATTCGGGCTATTCGTGGGA+CGG	0.637960	4.1:-39226563	MS.gene08634:CDS
TTATATGCTTACAGGAACAT+GGG	0.643732	4.1:+39226302	None:intergenic
CAGTCTGATCCTAAAGCTGG+TGG	0.645930	4.1:-39227033	MS.gene08634:CDS
GCTGGTGGTACTGACTGTGA+TGG	0.654915	4.1:-39227018	MS.gene08634:CDS
ACTATCCCGATTACCGGCAC+CGG	0.654923	4.1:-39226137	MS.gene08634:CDS
TGATCCTAAGAGGAACGCTA+GGG	0.663624	4.1:-39226328	MS.gene08634:CDS
GAACAGTGGATATTCTGGGT+TGG	0.667916	4.1:-39225791	MS.gene08634:intron
CAGCTTTAGGATCAGACTGG+TGG	0.671442	4.1:+39227037	None:intergenic
ATAGCCCGAATGTCACGGCA+GGG	0.681726	4.1:+39226574	None:intergenic
ATGTTGAGGAGCTAACAAAG+TGG	0.735999	4.1:-39227143	MS.gene08634:CDS
TAGCATACCAGAGATACCGG+CGG	0.755151	4.1:+39226933	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TGATAAAATACAAACAAATA+TGG	+	chr4.1:39226093-39226112	None:intergenic	15.0%
!!!	ATTTTTCAGTTTTTTGTTTT+TGG	-	chr4.1:39226994-39227013	MS.gene08634:CDS	15.0%
!!	GTTTATAATTATATGCTTAC+AGG	+	chr4.1:39226628-39226647	None:intergenic	20.0%
!!	TATTTAAGGAGACTTTAATT+AGG	-	chr4.1:39226934-39226953	MS.gene08634:intron	20.0%
!!	TTAAAGTCTCCTTAAATAAA+CGG	+	chr4.1:39226932-39226951	None:intergenic	20.0%
!!!	ATTTTACAACCGTTTATTTA+AGG	-	chr4.1:39226920-39226939	MS.gene08634:intron	20.0%
!	AGCACTTATTATGAAGAAAA+AGG	+	chr4.1:39226670-39226689	None:intergenic	25.0%
!	TATATTAACGAGTTTATGTG+TGG	-	chr4.1:39226295-39226314	MS.gene08634:intron	25.0%
	AAAGCATACTTTGACAGATA+TGG	-	chr4.1:39226466-39226485	MS.gene08634:CDS	30.0%
	AGCATAACTAACTATGTGTT+TGG	-	chr4.1:39226693-39226712	MS.gene08634:intron	30.0%
	AGGAGACTTTAATTAGGTTT+AGG	-	chr4.1:39226940-39226959	MS.gene08634:intron	30.0%
	ATGAAAACAGCAAATCCAAT+GGG	+	chr4.1:39226749-39226768	None:intergenic	30.0%
	ATTATATGCTTACAGGAACA+TGG	+	chr4.1:39226621-39226640	None:intergenic	30.0%
	TGGTTAAAACAGTGACATAA+AGG	+	chr4.1:39225849-39225868	None:intergenic	30.0%
	TTATATGCTTACAGGAACAT+GGG	+	chr4.1:39226620-39226639	None:intergenic	30.0%
!	ATCTGTCAAAGTATGCTTTT+TGG	+	chr4.1:39226465-39226484	None:intergenic	30.0%
!	GTGAAATGATGAAAAGGTTT+TGG	-	chr4.1:39226715-39226734	MS.gene08634:intron	30.0%
!	TGTTTGGTGAAATGATGAAA+AGG	-	chr4.1:39226709-39226728	MS.gene08634:intron	30.0%
!!!	ATTGTTTTTGTGATGAACAG+TGG	-	chr4.1:39227114-39227133	MS.gene08634:CDS	30.0%
!!!	GTCACTGTTTTAACCATTAT+TGG	-	chr4.1:39225853-39225872	MS.gene08634:intron	30.0%
	AACCTCTTAGAATGTATTGG+TGG	+	chr4.1:39227187-39227206	None:intergenic	35.0%
	ATTCATGATGGCTACAACAA+AGG	-	chr4.1:39226505-39226524	MS.gene08634:CDS	35.0%
	CATGAAAACAGCAAATCCAA+TGG	+	chr4.1:39226750-39226769	None:intergenic	35.0%
	CTGAACCTCTTAGAATGTAT+TGG	+	chr4.1:39227190-39227209	None:intergenic	35.0%
	GTAGCCATCATGAATAAAGT+TGG	+	chr4.1:39226500-39226519	None:intergenic	35.0%
	TACACATGCAAGGACTTTAT+AGG	-	chr4.1:39226028-39226047	MS.gene08634:intron	35.0%
	TACCACCAATACATTCTAAG+AGG	-	chr4.1:39227182-39227201	MS.gene08634:CDS	35.0%
	TGATGAACAGTGGATATTCT+GGG	-	chr4.1:39227124-39227143	MS.gene08634:CDS	35.0%
	TTATAGCATACCAGAGATAC+CGG	+	chr4.1:39225992-39226011	None:intergenic	35.0%
!!	GTATGCTTTTTGGAAACCTT+TGG	+	chr4.1:39226455-39226474	None:intergenic	35.0%
!!	TGGAATTTTGGGTATTGCTT+GGG	-	chr4.1:39225927-39225946	MS.gene08634:intron	35.0%
!!	TGTGATGGTGTTGGAATTTT+GGG	-	chr4.1:39225916-39225935	MS.gene08634:intron	35.0%
!!	TTGGAATTTTGGGTATTGCT+TGG	-	chr4.1:39225926-39225945	MS.gene08634:intron	35.0%
!!!	CATTGGATTTGCTGTTTTCA+TGG	-	chr4.1:39226748-39226767	MS.gene08634:intron	35.0%
	AGCACCATTGATAGATGTTG+AGG	-	chr4.1:39225762-39225781	MS.gene08634:CDS	40.0%
	AGCTCCTCAACATCTATCAA+TGG	+	chr4.1:39225769-39225788	None:intergenic	40.0%
	ATGTGTGGAATTGTGATCAC+AGG	-	chr4.1:39226310-39226329	MS.gene08634:intron	40.0%
	ATGTTGAGGAGCTAACAAAG+TGG	-	chr4.1:39225776-39225795	MS.gene08634:CDS	40.0%
	ATTAACCCGGCAAGAAGTTT+CGG	-	chr4.1:39226806-39226825	MS.gene08634:intron	40.0%
	CTACAACGACGGCAAAATTT+GGG	-	chr4.1:39226841-39226860	MS.gene08634:intron	40.0%
	CTGGTGGCTATAACCAATAA+TGG	+	chr4.1:39225869-39225888	None:intergenic	40.0%
	GACAGTGTAGACAAGAACAA+AGG	+	chr4.1:39226560-39226579	None:intergenic	40.0%
	GATGTTGAGGTTCAAGAACA+AGG	-	chr4.1:39225703-39225722	MS.gene08634:CDS	40.0%
	GCATACTTTGACAGATATGG+AGG	-	chr4.1:39226469-39226488	MS.gene08634:CDS	40.0%
	GGTGCCAACTTTATTCATGA+TGG	-	chr4.1:39226493-39226512	MS.gene08634:CDS	40.0%
	GTAAAACACTGCCCTAATCA+AGG	+	chr4.1:39226389-39226408	None:intergenic	40.0%
	GTGATGAACAGTGGATATTC+TGG	-	chr4.1:39227123-39227142	MS.gene08634:CDS	40.0%
	TACTTTGACAGATATGGAGG+TGG	-	chr4.1:39226472-39226491	MS.gene08634:CDS	40.0%
	TCAACATCTATCAATGGTGC+TGG	+	chr4.1:39225763-39225782	None:intergenic	40.0%
	TCTACAACGACGGCAAAATT+TGG	-	chr4.1:39226840-39226859	MS.gene08634:intron	40.0%
	TTAAAGCTCTTGGATCCTTC+AGG	-	chr4.1:39227213-39227232	MS.gene08634:CDS	40.0%
!	GAAGGATCCAAGAGCTTTAA+TGG	+	chr4.1:39227213-39227232	None:intergenic	40.0%
!	GATTAGGGCAGTGTTTTACA+TGG	-	chr4.1:39226390-39226409	MS.gene08634:CDS	40.0%
!	TACAACAAAGGCACAGCTTT+AGG	-	chr4.1:39226517-39226536	MS.gene08634:CDS	40.0%
!!	CTGTGATGGTGTTGGAATTT+TGG	-	chr4.1:39225915-39225934	MS.gene08634:intron	40.0%
!!	GCTTTAGGTGCTGAAATCAT+TGG	-	chr4.1:39226532-39226551	MS.gene08634:CDS	40.0%
!!!	TGCTGTTTTCATGGTTCACT+TGG	-	chr4.1:39226757-39226776	MS.gene08634:intron	40.0%
	ACAGCAAATCCAATGGGAAG+TGG	+	chr4.1:39226743-39226762	None:intergenic	45.0%
	ACTTCTTGCCGGGTTAATAC+CGG	+	chr4.1:39226804-39226823	None:intergenic	45.0%
	ATGGCATGCAACCCTAGTTA+GGG	+	chr4.1:39226074-39226093	None:intergenic	45.0%
	CTCACTCTCATACACATGCA+AGG	-	chr4.1:39226018-39226037	MS.gene08634:intron	45.0%
	GAACAGTGGATATTCTGGGT+TGG	-	chr4.1:39227128-39227147	MS.gene08634:CDS	45.0%
	GGTTCAGCCATTAAAGCTCT+TGG	-	chr4.1:39227203-39227222	MS.gene08634:CDS	45.0%
	TATGGCATGCAACCCTAGTT+AGG	+	chr4.1:39226075-39226094	None:intergenic	45.0%
	TGATCCTAAGAGGAACGCTA+GGG	-	chr4.1:39226591-39226610	MS.gene08634:intron	45.0%
	TGCATGTGTATGAGAGTGAG+AGG	+	chr4.1:39226018-39226037	None:intergenic	45.0%
	TGTGGAATTGTGATCACAGG+AGG	-	chr4.1:39226313-39226332	MS.gene08634:intron	45.0%
	TTGGAAACCTTTGGCAAGTC+CGG	+	chr4.1:39226446-39226465	None:intergenic	45.0%
	TTGGCTACTATCCCGATTAC+CGG	-	chr4.1:39226776-39226795	MS.gene08634:intron	45.0%
	TTTGCCGTCGTTGTAGATCA+CGG	+	chr4.1:39226837-39226856	None:intergenic	45.0%
!	ACATCTATCAATGGTGCTGG+AGG	+	chr4.1:39225760-39225779	None:intergenic	45.0%
!	CGGCAAAATTTGGGATGATC+AGG	-	chr4.1:39226850-39226869	MS.gene08634:intron	45.0%
!!	ACGGAAGGTGTCCTTGATTA+GGG	-	chr4.1:39226375-39226394	MS.gene08634:CDS	45.0%
!!	TTAATACCGGTGCCGGTAAT+CGG	+	chr4.1:39226791-39226810	None:intergenic	45.0%
!!	TTCTGGGTTGGTCCAATGAT+TGG	-	chr4.1:39227140-39227159	MS.gene08634:CDS	45.0%
!!	TTGGGTATTGCTTGGGCTTT+TGG	-	chr4.1:39225934-39225953	MS.gene08634:intron	45.0%
!!	TAATTAATAATTTAATGATA+TGG	+	chr4.1:39226883-39226902	None:intergenic	5.0%
	AGCGTTCCTCTTAGGATCAG+TGG	+	chr4.1:39226590-39226609	None:intergenic	50.0%
	ATCAACCCTGCCGTGACATT+CGG	-	chr4.1:39226340-39226359	MS.gene08634:CDS	50.0%
	CACCAGTCTGATCCTAAAGC+TGG	-	chr4.1:39225883-39225902	MS.gene08634:intron	50.0%
	CACGAATAGCCCGAATGTCA+CGG	+	chr4.1:39226353-39226372	None:intergenic	50.0%
	CAGTCAGTACCACCAGCTTT+AGG	+	chr4.1:39225898-39225917	None:intergenic	50.0%
	CAGTCTGATCCTAAAGCTGG+TGG	-	chr4.1:39225886-39225905	MS.gene08634:intron	50.0%
	CTGATCCGAAACTTCTTGCC+GGG	+	chr4.1:39226814-39226833	None:intergenic	50.0%
	CTGATCCTAAGAGGAACGCT+AGG	-	chr4.1:39226590-39226609	MS.gene08634:CDS	50.0%
	GCTGATCCGAAACTTCTTGC+CGG	+	chr4.1:39226815-39226834	None:intergenic	50.0%
	GTGACATTCGGGCTATTCGT+GGG	-	chr4.1:39226352-39226371	MS.gene08634:CDS	50.0%
	TAGCATACCAGAGATACCGG+CGG	+	chr4.1:39225989-39226008	None:intergenic	50.0%
	TCAGCCGTGATCTACAACGA+CGG	-	chr4.1:39226830-39226849	MS.gene08634:intron	50.0%
	TCCAATGATTGGAGCTGCTG+TGG	-	chr4.1:39227151-39227170	MS.gene08634:CDS	50.0%
	TCTCTGCCACTGATCCTAAG+AGG	-	chr4.1:39226581-39226600	MS.gene08634:CDS	50.0%
!	ATCCTTGTTTACTGCACCGC+CGG	-	chr4.1:39225970-39225989	MS.gene08634:intron	50.0%
!	CTATCAATGGTGCTGGAGGT+GGG	+	chr4.1:39225756-39225775	None:intergenic	50.0%
!	GGTATTGCTTGGGCTTTTGG+TGG	-	chr4.1:39225937-39225956	MS.gene08634:intron	50.0%
!	TCTATCAATGGTGCTGGAGG+TGG	+	chr4.1:39225757-39225776	None:intergenic	50.0%
!!	CACCAGCTTTAGGATCAGAC+TGG	+	chr4.1:39225888-39225907	None:intergenic	50.0%
!!	CAGCTTTAGGATCAGACTGG+TGG	+	chr4.1:39225885-39225904	None:intergenic	50.0%
!!	GACGGAAGGTGTCCTTGATT+AGG	-	chr4.1:39226374-39226393	MS.gene08634:CDS	50.0%
!!	GGTACTGACTGTGATGGTGT+TGG	-	chr4.1:39225907-39225926	MS.gene08634:intron	50.0%
!!	GTTTTGGCACCACTTCCCAT+TGG	-	chr4.1:39226731-39226750	MS.gene08634:intron	50.0%
!!	TAATACCGGTGCCGGTAATC+GGG	+	chr4.1:39226790-39226809	None:intergenic	50.0%
	AATAGCCCGAATGTCACGGC+AGG	+	chr4.1:39226349-39226368	None:intergenic	55.0%
	ACGACGCAGCAACCCTAACT+AGG	-	chr4.1:39226059-39226078	MS.gene08634:intron	55.0%
	ACTATCCCGATTACCGGCAC+CGG	-	chr4.1:39226782-39226801	MS.gene08634:intron	55.0%
	ATAGCCCGAATGTCACGGCA+GGG	+	chr4.1:39226348-39226367	None:intergenic	55.0%
	ATGATTGGAGCTGCTGTGGC+TGG	-	chr4.1:39227155-39227174	MS.gene08634:CDS	55.0%
	CATTCGGGCTATTCGTGGGA+CGG	-	chr4.1:39226356-39226375	MS.gene08634:CDS	55.0%
	CGACGCAGCAACCCTAACTA+GGG	-	chr4.1:39226060-39226079	MS.gene08634:intron	55.0%
	CGTGACATTCGGGCTATTCG+TGG	-	chr4.1:39226351-39226370	MS.gene08634:CDS	55.0%
	GAGTCCCTAGCGTTCCTCTT+AGG	+	chr4.1:39226598-39226617	None:intergenic	55.0%
	GCCACAGCAGCTCCAATCAT+TGG	+	chr4.1:39227155-39227174	None:intergenic	55.0%
	TACATGGCAGCACAGTGTGC+CGG	-	chr4.1:39226406-39226425	MS.gene08634:CDS	55.0%
	TACCGGCGGTGCAGTAAACA+AGG	+	chr4.1:39225975-39225994	None:intergenic	55.0%
	TCAACCCTGCCGTGACATTC+GGG	-	chr4.1:39226341-39226360	MS.gene08634:CDS	55.0%
!	TGTGGTACCGGACTTGCCAA+AGG	-	chr4.1:39226436-39226455	MS.gene08634:CDS	55.0%
!!	GCTGGTGGTACTGACTGTGA+TGG	-	chr4.1:39225901-39225920	MS.gene08634:intron	55.0%
!!	TACCGGCACCGGTATTAACC+CGG	-	chr4.1:39226793-39226812	MS.gene08634:intron	55.0%
	TACTGCACCGCCGGTATCTC+TGG	-	chr4.1:39225979-39225998	MS.gene08634:intron	60.0%
	TCCGGTACCACAGATTGCGC+CGG	+	chr4.1:39226428-39226447	None:intergenic	60.0%
	TGCCGGGTTAATACCGGTGC+CGG	+	chr4.1:39226798-39226817	None:intergenic	60.0%
!	ATGGTGCTGGAGGTGGGTCT+TGG	+	chr4.1:39225750-39225769	None:intergenic	60.0%
	CGGGCTATTCGTGGGACGGA+AGG	-	chr4.1:39226360-39226379	MS.gene08634:CDS	65.0%
	GCCGGCGCAATCTGTGGTAC+CGG	-	chr4.1:39226424-39226443	MS.gene08634:CDS	65.0%
!	CAGTGTGCCGGCGCAATCTG+TGG	-	chr4.1:39226418-39226437	MS.gene08634:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	39225694	39227247	39225694	ID=MS.gene08634
chr4.1	mRNA	39225694	39227247	39225694	ID=MS.gene08634.t1;Parent=MS.gene08634
chr4.1	exon	39226941	39227247	39226941	ID=MS.gene08634.t1.exon1;Parent=MS.gene08634.t1
chr4.1	CDS	39226941	39227247	39226941	ID=cds.MS.gene08634.t1;Parent=MS.gene08634.t1
chr4.1	exon	39226314	39226609	39226314	ID=MS.gene08634.t1.exon2;Parent=MS.gene08634.t1
chr4.1	CDS	39226314	39226609	39226314	ID=cds.MS.gene08634.t1;Parent=MS.gene08634.t1
chr4.1	exon	39226070	39226210	39226070	ID=MS.gene08634.t1.exon3;Parent=MS.gene08634.t1
chr4.1	CDS	39226070	39226210	39226070	ID=cds.MS.gene08634.t1;Parent=MS.gene08634.t1
chr4.1	exon	39225694	39225807	39225694	ID=MS.gene08634.t1.exon4;Parent=MS.gene08634.t1
chr4.1	CDS	39225694	39225807	39225694	ID=cds.MS.gene08634.t1;Parent=MS.gene08634.t1

Gene Sequence

>MS.gene08634

ATGGCTAAAGATGTTGAGGTTCAAGAACAAGGAGAATACTCAGCAAAAGATTACCAAGACCCACCTCCAGCACCATTGATAGATGTTGAGGAGCTAACAAAGTGGTCATTTTATAGAGCTCTTATAGCTGAGTTTGTAGCAACACTTCTCTTCCTTTATGTCACTGTTTTAACCATTATTGGTTATAGCCACCAGTCTGATCCTAAAGCTGGTGGTACTGACTGTGATGGTGTTGGAATTTTGGGTATTGCTTGGGCTTTTGGTGGCATGATTTTCATCCTTGTTTACTGCACCGCCGGTATCTCTGGTATGCTATAACTTCCTCTCACTCTCATACACATGCAAGGACTTTATAGGTCTTTGCAACGACGCAGCAACCCTAACTAGGGTTGCATGCCATATTTGTTTGTATTTTATCAAAATATCAAAGTTCTAAGCTTAATTGTAACTACAACTAAAAATTATGTTTTTAAGTAACTTTTTATACGCTATTAGAAATAGTTTACTAAAATTAGATGAGAAGAGTTTATGAAAATGTTGCAAGCTATTTTTTTTATAAGTTTACTCGTATTTTATAGATAAATGTTAGTCGCTAGTATGTTATATTAACGAGTTTATGTGTGGAATTGTGATCACAGGAGGACATATCAACCCTGCCGTGACATTCGGGCTATTCGTGGGACGGAAGGTGTCCTTGATTAGGGCAGTGTTTTACATGGCAGCACAGTGTGCCGGCGCAATCTGTGGTACCGGACTTGCCAAAGGTTTCCAAAAAGCATACTTTGACAGATATGGAGGTGGTGCCAACTTTATTCATGATGGCTACAACAAAGGCACAGCTTTAGGTGCTGAAATCATTGGTACCTTTGTTCTTGTCTACACTGTCTTCTCTGCCACTGATCCTAAGAGGAACGCTAGGGACTCCCATGTTCCTGTAAGCATATAATTATAAACTCAATTAACACACTCATCACCTTTTTCTTCATAATAAGTGCTTTAAGCATAACTAACTATGTGTTTGGTGAAATGATGAAAAGGTTTTGGCACCACTTCCCATTGGATTTGCTGTTTTCATGGTTCACTTGGCTACTATCCCGATTACCGGCACCGGTATTAACCCGGCAAGAAGTTTCGGATCAGCCGTGATCTACAACGACGGCAAAATTTGGGATGATCAGGTAAACATCCATATCATTAAATTATTAATTAAAGTGACACTAATAACTATTTTACAACCGTTTATTTAAGGAGACTTTAATTAGGTTTAGGTCTCTTGTCTTATATTAGAGACAAACTTTATATTTTTCAGTTTTTTGTTTTTGGTTTAGTGCTAAAACAATCGTTTTCTTGAATTTTACAATAGTCTTGAATTTATTTTTAAATATGTTGATGATTCTAATACATAATTAACTTTTGTTGAATTGTTTTTGTGATGAACAGTGGATATTCTGGGTTGGTCCAATGATTGGAGCTGCTGTGGCTGGAATCTACCACCAATACATTCTAAGAGGTTCAGCCATTAAAGCTCTTGGATCCTTCAGGAGCAATGCTTAA

Protein sequence

>MS.gene08634.t1

MAKDVEVQEQGEYSAKDYQDPPPAPLIDVEELTKWSFYRALIAEFVATLLFLYVTVLTIIGYSHQSDPKAGGTDCDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFVGRKVSLIRAVFYMAAQCAGAICGTGLAKGFQKAYFDRYGGGANFIHDGYNKGTALGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGSAVIYNDGKIWDDQWIFWVGPMIGAAVAGIYHQYILRGSAIKALGSFRSNA