Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08964.t1 | XP_013446625.1 | 90.6 | 160 | 15 | 0 | 1 | 160 | 34 | 193 | 1.10E-74 | 289.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08964.t1 | Q9SDN0 | 58.2 | 158 | 60 | 3 | 2 | 157 | 40 | 193 | 8.7e-44 | 177.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08964.t1 | A0A072TT90 | 90.6 | 160 | 15 | 0 | 1 | 160 | 34 | 193 | 8.0e-75 | 289.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049232 | MS.gene08964 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene049657 | MS.gene08964 | 0.827326 | 1.66E-54 | -1.69E-46 |
| MS.gene050170 | MS.gene08964 | 0.845043 | 5.19E-59 | -1.69E-46 |
| MS.gene050323 | MS.gene08964 | 0.802685 | 4.99E-49 | -1.69E-46 |
| MS.gene050496 | MS.gene08964 | 0.822607 | 2.16E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene08964 | 0.815047 | 1.13E-51 | -1.69E-46 |
| MS.gene051963 | MS.gene08964 | -0.82017 | 7.90E-53 | -1.69E-46 |
| MS.gene052066 | MS.gene08964 | 0.82348 | 1.35E-53 | -1.69E-46 |
| MS.gene052823 | MS.gene08964 | 0.809434 | 1.90E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene08964 | 0.801021 | 1.10E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene08964 | 0.802011 | 6.87E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene08964 | 0.822808 | 1.94E-53 | -1.69E-46 |
| MS.gene056266 | MS.gene08964 | 0.802721 | 4.90E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene08964 | 0.832107 | 1.14E-55 | -1.69E-46 |
| MS.gene05787 | MS.gene08964 | 0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene059837 | MS.gene08964 | 0.868262 | 7.44E-66 | -1.69E-46 |
| MS.gene059865 | MS.gene08964 | 0.809906 | 1.50E-50 | -1.69E-46 |
| MS.gene05996 | MS.gene08964 | 0.841108 | 5.80E-58 | -1.69E-46 |
| MS.gene06000 | MS.gene08964 | 0.838369 | 3.00E-57 | -1.69E-46 |
| MS.gene060187 | MS.gene08964 | -0.800041 | 1.74E-48 | -1.69E-46 |
| MS.gene060778 | MS.gene08964 | 0.815223 | 1.03E-51 | -1.69E-46 |
| MS.gene06077 | MS.gene08964 | 0.814519 | 1.48E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene08964 | 0.836298 | 1.02E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08964.t1 | MTR_8g081620 | 96.250 | 160 | 6 | 0 | 1 | 160 | 34 | 193 | 7.93e-115 | 323 |
| MS.gene08964.t1 | MTR_4g094275 | 34.848 | 132 | 75 | 4 | 27 | 156 | 51 | 173 | 7.58e-18 | 76.6 |
| MS.gene08964.t1 | MTR_5g022210 | 48.485 | 66 | 34 | 0 | 29 | 94 | 74 | 139 | 9.31e-15 | 68.2 |
| MS.gene08964.t1 | MTR_5g022180 | 45.714 | 70 | 38 | 0 | 27 | 96 | 71 | 140 | 3.56e-14 | 66.6 |
| MS.gene08964.t1 | MTR_5g022130 | 44.928 | 69 | 38 | 0 | 28 | 96 | 72 | 140 | 4.58e-14 | 66.2 |
| MS.gene08964.t1 | MTR_8g075780 | 42.857 | 70 | 40 | 0 | 27 | 96 | 47 | 116 | 2.09e-13 | 63.9 |
| MS.gene08964.t1 | MTR_7g112360 | 46.970 | 66 | 33 | 1 | 28 | 91 | 17 | 82 | 4.91e-13 | 62.4 |
| MS.gene08964.t1 | MTR_2g104030 | 35.644 | 101 | 54 | 2 | 6 | 98 | 41 | 138 | 5.66e-13 | 65.9 |
| MS.gene08964.t1 | MTR_7g112360 | 46.970 | 66 | 33 | 1 | 28 | 91 | 17 | 82 | 6.75e-13 | 63.2 |
| MS.gene08964.t1 | MTR_3g061170 | 47.692 | 65 | 34 | 0 | 27 | 91 | 59 | 123 | 7.16e-13 | 63.2 |
| MS.gene08964.t1 | MTR_2g008520 | 44.000 | 75 | 38 | 3 | 27 | 98 | 55 | 128 | 1.04e-12 | 62.8 |
| MS.gene08964.t1 | MTR_2g008540 | 44.000 | 75 | 38 | 3 | 27 | 98 | 55 | 128 | 1.04e-12 | 62.8 |
| MS.gene08964.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 3.14e-12 | 62.0 |
| MS.gene08964.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 3.76e-12 | 61.6 |
| MS.gene08964.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 5.66e-12 | 62.0 |
| MS.gene08964.t1 | MTR_7g109340 | 42.466 | 73 | 40 | 1 | 26 | 98 | 25 | 95 | 6.80e-12 | 62.4 |
| MS.gene08964.t1 | MTR_8g022310 | 44.118 | 68 | 34 | 1 | 28 | 91 | 11 | 78 | 7.13e-12 | 61.2 |
| MS.gene08964.t1 | MTR_2g097690 | 44.444 | 63 | 32 | 1 | 29 | 91 | 77 | 136 | 2.04e-11 | 60.1 |
| MS.gene08964.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 80 | 150 | 3.53e-11 | 60.5 |
| MS.gene08964.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 81 | 151 | 3.64e-11 | 60.5 |
| MS.gene08964.t1 | MTR_3g087030 | 33.028 | 109 | 52 | 3 | 2 | 92 | 39 | 144 | 3.90e-11 | 60.5 |
| MS.gene08964.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 74 | 144 | 4.01e-11 | 60.5 |
| MS.gene08964.t1 | MTR_2g097690 | 44.444 | 63 | 32 | 1 | 29 | 91 | 77 | 136 | 4.65e-11 | 59.7 |
| MS.gene08964.t1 | MTR_7g085600 | 45.455 | 66 | 33 | 1 | 29 | 94 | 56 | 118 | 4.91e-11 | 59.7 |
| MS.gene08964.t1 | MTR_5g065160 | 42.466 | 73 | 40 | 1 | 25 | 97 | 81 | 151 | 4.97e-11 | 60.1 |
| MS.gene08964.t1 | MTR_3g108020 | 40.845 | 71 | 41 | 1 | 28 | 98 | 5 | 74 | 7.53e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08964.t1 | AT4G13830 | 58.228 | 158 | 60 | 3 | 2 | 157 | 40 | 193 | 1.07e-57 | 179 |
| MS.gene08964.t1 | AT4G13830 | 61.404 | 114 | 42 | 2 | 2 | 114 | 40 | 152 | 8.37e-41 | 134 |
| MS.gene08964.t1 | AT4G13830 | 60.526 | 114 | 43 | 2 | 2 | 114 | 40 | 152 | 1.72e-40 | 134 |
| MS.gene08964.t1 | AT4G36040 | 47.887 | 71 | 36 | 1 | 27 | 96 | 65 | 135 | 9.93e-15 | 67.8 |
| MS.gene08964.t1 | AT1G56300 | 46.269 | 67 | 34 | 1 | 27 | 91 | 13 | 79 | 1.13e-13 | 64.3 |
| MS.gene08964.t1 | AT1G56300 | 46.269 | 67 | 34 | 1 | 27 | 91 | 13 | 79 | 2.21e-13 | 64.3 |
| MS.gene08964.t1 | AT3G13310 | 42.647 | 68 | 34 | 1 | 27 | 94 | 64 | 126 | 2.38e-13 | 64.3 |
| MS.gene08964.t1 | AT2G17880 | 45.455 | 66 | 36 | 0 | 27 | 92 | 68 | 133 | 1.81e-12 | 62.0 |
| MS.gene08964.t1 | AT1G59980 | 42.466 | 73 | 40 | 1 | 26 | 98 | 22 | 92 | 8.36e-12 | 62.4 |
| MS.gene08964.t1 | AT1G59980 | 42.466 | 73 | 40 | 1 | 26 | 98 | 22 | 92 | 8.53e-12 | 62.4 |
| MS.gene08964.t1 | AT4G39960 | 41.892 | 74 | 40 | 1 | 28 | 101 | 86 | 156 | 1.18e-11 | 62.0 |
| MS.gene08964.t1 | AT4G39960 | 41.892 | 74 | 40 | 1 | 28 | 101 | 86 | 156 | 1.18e-11 | 62.0 |
| MS.gene08964.t1 | AT2G22360 | 36.957 | 92 | 52 | 2 | 1 | 92 | 63 | 148 | 1.51e-11 | 61.6 |
| MS.gene08964.t1 | AT3G62600 | 39.744 | 78 | 45 | 1 | 21 | 98 | 20 | 95 | 1.61e-11 | 61.6 |
| MS.gene08964.t1 | AT3G14200 | 43.939 | 66 | 36 | 1 | 27 | 91 | 12 | 77 | 1.98e-11 | 60.5 |
| MS.gene08964.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 5.33e-11 | 60.1 |
| MS.gene08964.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 5.33e-11 | 60.1 |
| MS.gene08964.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 5.33e-11 | 60.1 |
| MS.gene08964.t1 | AT1G80030 | 38.462 | 78 | 45 | 1 | 21 | 98 | 69 | 143 | 5.56e-11 | 60.1 |
| MS.gene08964.t1 | AT5G25530 | 40.845 | 71 | 41 | 1 | 28 | 98 | 5 | 74 | 7.11e-11 | 59.7 |
| MS.gene08964.t1 | AT4G37480 | 39.062 | 64 | 39 | 0 | 29 | 92 | 58 | 121 | 7.28e-11 | 59.7 |
| MS.gene08964.t1 | AT2G35720 | 33.000 | 100 | 66 | 1 | 26 | 124 | 14 | 113 | 7.51e-11 | 59.7 |
| MS.gene08964.t1 | AT1G59725 | 40.000 | 65 | 39 | 0 | 28 | 92 | 5 | 69 | 8.87e-11 | 59.3 |
Find 58 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGGAGCTTCTACGATCTTC+TGG | 0.253540 | 4.4:+14789912 | MS.gene08964:CDS |
| TGCTATCACTTCTTCTCTTC+AGG | 0.257402 | 4.4:-14792626 | None:intergenic |
| TCCATCAATGAACCGGATTC+TGG | 0.328084 | 4.4:-14789940 | None:intergenic |
| GTATACCAAGAGGTTTATTC+AGG | 0.341476 | 4.4:+14790035 | MS.gene08964:CDS |
| TTGAAGGTGGCTTTAAGCTT+TGG | 0.356103 | 4.4:-14789868 | None:intergenic |
| TGAAGGTGGCTTTAAGCTTT+GGG | 0.376965 | 4.4:-14789867 | None:intergenic |
| CCCATGACCCGAATCTCATT+CGG | 0.404157 | 4.4:+14789835 | None:intergenic |
| ACCAGAATCCGGTTCATTGA+TGG | 0.409355 | 4.4:+14789939 | MS.gene08964:CDS |
| CGCCACAACGCCGTCGTTGA+AGG | 0.409679 | 4.4:-14789884 | None:intergenic |
| TTTGATATCCATCAATGAAC+CGG | 0.418110 | 4.4:-14789947 | None:intergenic |
| GTATGACCCGAATGAGATTC+GGG | 0.427087 | 4.4:-14789842 | None:intergenic |
| AGTATGACCCGAATGAGATT+CGG | 0.429483 | 4.4:-14789843 | None:intergenic |
| ATGCTATAATCATTCTGATC+AGG | 0.431312 | 4.4:+14790155 | MS.gene08964:CDS |
| AAACTTTGTCTGATCCTTCA+AGG | 0.443921 | 4.4:+14790073 | MS.gene08964:CDS |
| GGATGTTTCACCACCGGATC+GGG | 0.463368 | 4.4:+14790005 | MS.gene08964:CDS |
| CCCGAATGAGATTCGGGTCA+TGG | 0.464892 | 4.4:-14789836 | None:intergenic |
| CTCGAATACGCCAGCAGAGG+GGG | 0.466457 | 4.4:+14792685 | MS.gene08964:CDS |
| TTATTAGGTGAGTGAACAAA+AGG | 0.466965 | 4.4:+14792566 | MS.gene08964:intron |
| CCATGACCCGAATCTCATTC+GGG | 0.467417 | 4.4:+14789836 | None:intergenic |
| TCATACATAATCCTCCTTGA+AGG | 0.468151 | 4.4:-14790087 | None:intergenic |
| CGGAGCTTCTACGATCTTCT+GGG | 0.475758 | 4.4:+14789913 | MS.gene08964:CDS |
| CAAGAGGTTTATTCAGGTGC+AGG | 0.475899 | 4.4:+14790041 | MS.gene08964:CDS |
| TGAGTGAACAAAAGGATGAA+TGG | 0.478243 | 4.4:+14792574 | MS.gene08964:CDS |
| CAACGACGGCGTTGTGGCGG+AGG | 0.487062 | 4.4:+14789888 | MS.gene08964:CDS |
| GATTATGTATGATAGAGATA+TGG | 0.488939 | 4.4:+14790098 | MS.gene08964:CDS |
| CGATCCGGTGGTGAAACATC+CGG | 0.500626 | 4.4:-14790003 | None:intergenic |
| GGCTCGAATACGCCAGCAGA+GGG | 0.500705 | 4.4:+14792683 | MS.gene08964:CDS |
| GTATACTCTTCCACCCGATC+CGG | 0.515930 | 4.4:-14790018 | None:intergenic |
| TCGAATACGCCAGCAGAGGG+GGG | 0.524687 | 4.4:+14792686 | MS.gene08964:CDS |
| GATCCGGTGGTGAAACATCC+GGG | 0.526103 | 4.4:-14790002 | None:intergenic |
| CCGAATGAGATTCGGGTCAT+GGG | 0.531452 | 4.4:-14789835 | None:intergenic |
| AAGAAGTGATAGCAAGGTCA+TGG | 0.532505 | 4.4:+14792635 | MS.gene08964:CDS |
| CTTCTGGGCATACCAGAATC+CGG | 0.533025 | 4.4:+14789928 | MS.gene08964:CDS |
| CGAATACGCCAGCAGAGGGG+GGG | 0.536867 | 4.4:+14792687 | MS.gene08964:CDS |
| CGGATGTTTCACCACCGGAT+CGG | 0.539387 | 4.4:+14790004 | MS.gene08964:CDS |
| CTTAAAGCCACCTTCAACGA+CGG | 0.544649 | 4.4:+14789874 | MS.gene08964:CDS |
| CTGCACCTGAATAAACCTCT+TGG | 0.549933 | 4.4:-14790040 | None:intergenic |
| CGGCTCGAATACGCCAGCAG+AGG | 0.554435 | 4.4:+14792682 | MS.gene08964:CDS |
| CACCTTCAACGACGGCGTTG+TGG | 0.564399 | 4.4:+14789882 | MS.gene08964:CDS |
| ACGGCGTTGTGGCGGAGGAA+CGG | 0.572751 | 4.4:+14789893 | MS.gene08964:CDS |
| TGCTGCTGATAATACGTCAT+GGG | 0.573906 | 4.4:+14792659 | MS.gene08964:CDS |
| CACAACGCCGTCGTTGAAGG+TGG | 0.575442 | 4.4:-14789881 | None:intergenic |
| CTTCAACGACGGCGTTGTGG+CGG | 0.582226 | 4.4:+14789885 | MS.gene08964:CDS |
| TACTCTTCCACCCGATCCGG+TGG | 0.594060 | 4.4:-14790015 | None:intergenic |
| AGGATGAATGGAAATCTCGT+TGG | 0.596088 | 4.4:+14792586 | MS.gene08964:CDS |
| GAAGAGAAGAAGTGATAGCA+AGG | 0.602140 | 4.4:+14792629 | MS.gene08964:CDS |
| GAGGTTTATTCAGGTGCAGG+AGG | 0.604858 | 4.4:+14790044 | MS.gene08964:CDS |
| TGTTTCACCACCGGATCGGG+TGG | 0.605740 | 4.4:+14790008 | MS.gene08964:CDS |
| ATGATAGAGATATGGCTAGA+GGG | 0.609573 | 4.4:+14790106 | MS.gene08964:CDS |
| GCTCGAATACGCCAGCAGAG+GGG | 0.614172 | 4.4:+14792684 | MS.gene08964:CDS |
| TATGATAGAGATATGGCTAG+AGG | 0.622164 | 4.4:+14790105 | MS.gene08964:CDS |
| CGTTGGCAAACTCAACTCGA+TGG | 0.631038 | 4.4:+14792603 | MS.gene08964:CDS |
| TCACCCGGATGTTTCACCAC+CGG | 0.635031 | 4.4:+14789999 | MS.gene08964:CDS |
| TGCTGATAATACGTCATGGG+CGG | 0.647620 | 4.4:+14792662 | MS.gene08964:CDS |
| CTTTGTCTGATCCTTCAAGG+AGG | 0.657466 | 4.4:+14790076 | MS.gene08964:CDS |
| ATGCTGCTGATAATACGTCA+TGG | 0.662327 | 4.4:+14792658 | MS.gene08964:CDS |
| ACTTGCAAGAAAGTATCACC+CGG | 0.704249 | 4.4:+14789984 | MS.gene08964:CDS |
| GGGTGGAAGAGTATACCAAG+AGG | 0.760271 | 4.4:+14790025 | MS.gene08964:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAAAAATATAATTGATTA+TGG | - | chr4.4:14792186-14792205 | None:intergenic | 10.0% |
| !! | ATTATAATGAAATAAAAAAC+AGG | + | chr4.4:14792069-14792088 | MS.gene08964:intron | 10.0% |
| !! | TTATGAAATATAAGAAAAAA+TGG | - | chr4.4:14790201-14790220 | None:intergenic | 10.0% |
| !!! | TAATCAATTATATTTTTTCT+TGG | + | chr4.4:14792186-14792205 | MS.gene08964:intron | 10.0% |
| !! | AAAATATAATTGATTATGGA+AGG | - | chr4.4:14792182-14792201 | None:intergenic | 15.0% |
| !! | AAATATAATTGATTATGGAA+GGG | - | chr4.4:14792181-14792200 | None:intergenic | 15.0% |
| !! | GATTGTTAAGAAATTTAAAA+TGG | + | chr4.4:14792468-14792487 | MS.gene08964:intron | 15.0% |
| !! | GCTATTAATTATTATTTGTT+AGG | + | chr4.4:14790818-14790837 | MS.gene08964:intron | 15.0% |
| !! | TTACTTTGATTCTTATTAAA+AGG | - | chr4.4:14791985-14792004 | None:intergenic | 15.0% |
| !! | TTGCTTAAAAATATCTTATA+TGG | + | chr4.4:14791148-14791167 | MS.gene08964:intron | 15.0% |
| !!! | ATTTGATTTATACATACTAT+CGG | - | chr4.4:14790463-14790482 | None:intergenic | 15.0% |
| !!! | CAGTTTTTTGTAATAAAAAA+TGG | - | chr4.4:14791931-14791950 | None:intergenic | 15.0% |
| !!! | TTTATGTTGATTTTTTGTTT+TGG | + | chr4.4:14790298-14790317 | MS.gene08964:intron | 15.0% |
| !! | TAAGTTATTGCTTTCTTATT+AGG | + | chr4.4:14792551-14792570 | MS.gene08964:intron | 20.0% |
| !! | TGTTAAAGAGTTAATTGATA+TGG | + | chr4.4:14790388-14790407 | MS.gene08964:intron | 20.0% |
| !! | TTACAATTTATCAATCTGTT+CGG | + | chr4.4:14791405-14791424 | MS.gene08964:intron | 20.0% |
| !!! | AGTTGTTTTAAATGTTAAGT+TGG | + | chr4.4:14792381-14792400 | MS.gene08964:intron | 20.0% |
| !!! | ATTTTTTTCTTCTTCTTATG+GGG | + | chr4.4:14790228-14790247 | MS.gene08964:intron | 20.0% |
| !!! | GATTTTTTTCTTCTTCTTAT+GGG | + | chr4.4:14790227-14790246 | MS.gene08964:intron | 20.0% |
| !!! | GTTTATGTTTGTTATTGTTA+TGG | + | chr4.4:14790360-14790379 | MS.gene08964:intron | 20.0% |
| !!! | TGATTTTTTTCTTCTTCTTA+TGG | + | chr4.4:14790226-14790245 | MS.gene08964:intron | 20.0% |
| !!! | TTTTTGAACTGATATATGAT+TGG | + | chr4.4:14790413-14790432 | MS.gene08964:intron | 20.0% |
| ! | AAAAGCTTCTCAAACAAAAA+AGG | - | chr4.4:14790943-14790962 | None:intergenic | 25.0% |
| ! | AACAAATTACAACCTCAAAA+AGG | - | chr4.4:14790857-14790876 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAATAGCTTA+TGG | + | chr4.4:14790627-14790646 | MS.gene08964:intron | 25.0% |
| ! | ACAAATTACAACCTCAAAAA+GGG | - | chr4.4:14790856-14790875 | None:intergenic | 25.0% |
| ! | ACATTAATAATTGAAGAGCT+TGG | + | chr4.4:14791355-14791374 | MS.gene08964:intron | 25.0% |
| ! | CAAAGTAAAAACAAAGTGAT+AGG | + | chr4.4:14791997-14792016 | MS.gene08964:intron | 25.0% |
| ! | GAACAAATATATATCAGAAC+TGG | + | chr4.4:14791720-14791739 | MS.gene08964:intron | 25.0% |
| ! | GATTATGTATGATAGAGATA+TGG | + | chr4.4:14790098-14790117 | MS.gene08964:CDS | 25.0% |
| ! | GGTAAGTTGTCTATTTAAAA+TGG | + | chr4.4:14792489-14792508 | MS.gene08964:intron | 25.0% |
| ! | TACAATTTATCAATCTGTTC+GGG | + | chr4.4:14791406-14791425 | MS.gene08964:intron | 25.0% |
| ! | TCAATTATTAATGTGAGCTA+TGG | - | chr4.4:14791349-14791368 | None:intergenic | 25.0% |
| ! | TTAAACTAATCACATAATCC+AGG | + | chr4.4:14792433-14792452 | MS.gene08964:intron | 25.0% |
| !! | ATAAATTGTAAGCTTTTCAG+GGG | - | chr4.4:14791396-14791415 | None:intergenic | 25.0% |
| !! | CTCTTAGGTTCAAATATTTT+AGG | + | chr4.4:14791855-14791874 | MS.gene08964:intron | 25.0% |
| !! | GATAAATTGTAAGCTTTTCA+GGG | - | chr4.4:14791397-14791416 | None:intergenic | 25.0% |
| !! | TGATAAATTGTAAGCTTTTC+AGG | - | chr4.4:14791398-14791417 | None:intergenic | 25.0% |
| !! | TTGTCAAGTTAGATCATTTT+TGG | + | chr4.4:14790486-14790505 | MS.gene08964:intron | 25.0% |
| !!! | AAGTTATTTTCCTACTGATT+TGG | + | chr4.4:14791688-14791707 | MS.gene08964:intron | 25.0% |
| !!! | ATGTTAAAATTAGTTTTGCC+TGG | + | chr4.4:14791178-14791197 | MS.gene08964:intron | 25.0% |
| !!! | TATTTTTTTCTCCCTTTTTG+AGG | + | chr4.4:14790842-14790861 | MS.gene08964:intron | 25.0% |
| !!! | TCCTTAAATTGATTTTGCAT+GGG | + | chr4.4:14791028-14791047 | MS.gene08964:intron | 25.0% |
| !!! | TGTGGTTTTATCATCATTTA+AGG | + | chr4.4:14791533-14791552 | MS.gene08964:intron | 25.0% |
| !!! | TGTTAAAATTAGTTTTGCCT+GGG | + | chr4.4:14791179-14791198 | MS.gene08964:intron | 25.0% |
| !!! | TTTTTTGTTTGAGAAGCTTT+TGG | + | chr4.4:14790942-14790961 | MS.gene08964:intron | 25.0% |
| AACACAAGAATCATCTATGA+TGG | - | chr4.4:14791088-14791107 | None:intergenic | 30.0% | |
| ACAATTTATCAATCTGTTCG+GGG | + | chr4.4:14791407-14791426 | MS.gene08964:intron | 30.0% | |
| AGCAAAATGTCTTCAAGAAA+AGG | - | chr4.4:14792231-14792250 | None:intergenic | 30.0% | |
| ATGCTATAATCATTCTGATC+AGG | + | chr4.4:14790155-14790174 | MS.gene08964:CDS | 30.0% | |
| ATTTGAACCTAAGAGAAAGA+AGG | - | chr4.4:14791850-14791869 | None:intergenic | 30.0% | |
| CATATACACACAAAAGGAAA+TGG | - | chr4.4:14792304-14792323 | None:intergenic | 30.0% | |
| GAAATAAAAAACAGGCAACT+TGG | + | chr4.4:14792077-14792096 | MS.gene08964:intron | 30.0% | |
| TACATACTATCGGTGTAAAA+AGG | - | chr4.4:14790453-14790472 | None:intergenic | 30.0% | |
| TGCCATGCAAAATCAATTTA+AGG | - | chr4.4:14791032-14791051 | None:intergenic | 30.0% | |
| TTAGGATGATGAAACACTTT+AGG | + | chr4.4:14791873-14791892 | MS.gene08964:intron | 30.0% | |
| TTATTAGGTGAGTGAACAAA+AGG | + | chr4.4:14792566-14792585 | MS.gene08964:intron | 30.0% | |
| TTATTGTGCAACTTCTATGT+TGG | + | chr4.4:14790902-14790921 | MS.gene08964:intron | 30.0% | |
| TTGCTTGTATGAGTATGTTA+CGG | + | chr4.4:14792246-14792265 | MS.gene08964:intron | 30.0% | |
| TTTGATATCCATCAATGAAC+CGG | - | chr4.4:14789950-14789969 | None:intergenic | 30.0% | |
| TTTGATTACATGACATTGTG+TGG | + | chr4.4:14791515-14791534 | MS.gene08964:intron | 30.0% | |
| ! | ACTGTTTTCATAAGCTATTC+TGG | + | chr4.4:14790592-14790611 | MS.gene08964:intron | 30.0% |
| ! | CAAAGTGATAGGTACATTTT+AGG | + | chr4.4:14792008-14792027 | MS.gene08964:intron | 30.0% |
| !! | AGTATCGTAATATTTTGAGG+AGG | + | chr4.4:14791752-14791771 | MS.gene08964:intron | 30.0% |
| !! | CCTTAAATTGATTTTGCATG+GGG | + | chr4.4:14791029-14791048 | MS.gene08964:intron | 30.0% |
| !! | GTCCTTAAATTGATTTTGCA+TGG | + | chr4.4:14791027-14791046 | MS.gene08964:intron | 30.0% |
| !! | TTCTGGTTCCTGATATTTAT+CGG | + | chr4.4:14791798-14791817 | MS.gene08964:intron | 30.0% |
| !!! | AGTGTTAATTTTTTCAACCC+AGG | - | chr4.4:14791199-14791218 | None:intergenic | 30.0% |
| !!! | TTTGTTTTGGAATTAGTGTG+TGG | + | chr4.4:14790311-14790330 | MS.gene08964:intron | 30.0% |
| AAAAACAGGCAACTTGGTTT+AGG | + | chr4.4:14792083-14792102 | MS.gene08964:intron | 35.0% | |
| AAAACAATGAAGGGTCTCTT+TGG | - | chr4.4:14790736-14790755 | None:intergenic | 35.0% | |
| AAAACAGGCAACTTGGTTTA+GGG | + | chr4.4:14792084-14792103 | MS.gene08964:intron | 35.0% | |
| AAACTTTCACAGAACTGAGA+TGG | + | chr4.4:14791613-14791632 | MS.gene08964:intron | 35.0% | |
| AAACTTTGTCTGATCCTTCA+AGG | + | chr4.4:14790073-14790092 | MS.gene08964:CDS | 35.0% | |
| AACACAAGAATCATCCATGA+TGG | - | chr4.4:14791003-14791022 | None:intergenic | 35.0% | |
| ACAATCAGAAAACAACATCC+TGG | - | chr4.4:14792454-14792473 | None:intergenic | 35.0% | |
| ATATATCAGAACTGGACTGT+AGG | + | chr4.4:14791728-14791747 | MS.gene08964:intron | 35.0% | |
| ATGATAGAGATATGGCTAGA+GGG | + | chr4.4:14790106-14790125 | MS.gene08964:CDS | 35.0% | |
| ATTTGCTTAATCGTGACTTC+TGG | + | chr4.4:14791781-14791800 | MS.gene08964:intron | 35.0% | |
| CACACAAAAGGAAATGGATA+TGG | - | chr4.4:14792298-14792317 | None:intergenic | 35.0% | |
| CCCCATGCAAAATCAATTTA+AGG | - | chr4.4:14791117-14791136 | None:intergenic | 35.0% | |
| CCTAAGATAACCAAATCAGT+AGG | - | chr4.4:14791701-14791720 | None:intergenic | 35.0% | |
| CGTTGACATATACACACAAA+AGG | - | chr4.4:14792310-14792329 | None:intergenic | 35.0% | |
| GTATACCAAGAGGTTTATTC+AGG | + | chr4.4:14790035-14790054 | MS.gene08964:CDS | 35.0% | |
| TATATCAGAACTGGACTGTA+GGG | + | chr4.4:14791729-14791748 | MS.gene08964:intron | 35.0% | |
| TATGATAGAGATATGGCTAG+AGG | + | chr4.4:14790105-14790124 | MS.gene08964:CDS | 35.0% | |
| TCATACATAATCCTCCTTGA+AGG | - | chr4.4:14790090-14790109 | None:intergenic | 35.0% | |
| TCCCAGATGAAAACAATGAA+GGG | - | chr4.4:14790745-14790764 | None:intergenic | 35.0% | |
| TGAGTGAACAAAAGGATGAA+TGG | + | chr4.4:14792574-14792593 | MS.gene08964:CDS | 35.0% | |
| ! | ACCCTTCATTGTTTTCATCT+GGG | + | chr4.4:14790741-14790760 | MS.gene08964:intron | 35.0% |
| ! | ATGCTCTTTTTACACCATCA+TGG | + | chr4.4:14790986-14791005 | MS.gene08964:intron | 35.0% |
| ! | TCTCATGTTTTGTCAGTGTA+TGG | + | chr4.4:14790876-14790895 | MS.gene08964:intron | 35.0% |
| ! | TTCATTGTTTTCATCTGGGA+GGG | + | chr4.4:14790745-14790764 | MS.gene08964:intron | 35.0% |
| ! | TTTGTCAAGGTTCTGATTTG+TGG | + | chr4.4:14790772-14790791 | MS.gene08964:intron | 35.0% |
| !! | AGTAACTTGTTCAGTGTTTG+TGG | - | chr4.4:14792350-14792369 | None:intergenic | 35.0% |
| !! | CCTACTGATTTGGTTATCTT+AGG | + | chr4.4:14791698-14791717 | MS.gene08964:intron | 35.0% |
| !! | GTGTAACTGACTTACGTTTT+GGG | + | chr4.4:14792106-14792125 | MS.gene08964:intron | 35.0% |
| !! | TTATTTTGCAGTGGAAAACC+CGG | - | chr4.4:14791451-14791470 | None:intergenic | 35.0% |
| !!! | CAGATTAGCTTATTTTGCAG+TGG | - | chr4.4:14791460-14791479 | None:intergenic | 35.0% |
| !!! | GGGAGTATCGTAATATTTTG+AGG | + | chr4.4:14791749-14791768 | MS.gene08964:intron | 35.0% |
| AAGAAGTGATAGCAAGGTCA+TGG | + | chr4.4:14792635-14792654 | MS.gene08964:CDS | 40.0% | |
| AGGATGAATGGAAATCTCGT+TGG | + | chr4.4:14792586-14792605 | MS.gene08964:CDS | 40.0% | |
| AGTATGACCCGAATGAGATT+CGG | - | chr4.4:14789846-14789865 | None:intergenic | 40.0% | |
| ATGCTGCTGATAATACGTCA+TGG | + | chr4.4:14792658-14792677 | MS.gene08964:CDS | 40.0% | |
| ATGGCATCTCAAGCAAGTTT+AGG | + | chr4.4:14791046-14791065 | MS.gene08964:intron | 40.0% | |
| CTCAGTTCTGTGAAAGTTTC+AGG | - | chr4.4:14791612-14791631 | None:intergenic | 40.0% | |
| CTCCCAGATGAAAACAATGA+AGG | - | chr4.4:14790746-14790765 | None:intergenic | 40.0% | |
| GAAAGAAGGAGATAGCACAA+AGG | - | chr4.4:14791836-14791855 | None:intergenic | 40.0% | |
| GAAGAGAAGAAGTGATAGCA+AGG | + | chr4.4:14792629-14792648 | MS.gene08964:CDS | 40.0% | |
| GCTATCTCCTTCTTTCTCTT+AGG | + | chr4.4:14791840-14791859 | MS.gene08964:intron | 40.0% | |
| GTAGAGCTTATGACTGAAAC+CGG | + | chr4.4:14791429-14791448 | MS.gene08964:intron | 40.0% | |
| TAGAGCTTATGACTGAAACC+GGG | + | chr4.4:14791430-14791449 | MS.gene08964:intron | 40.0% | |
| TGCTATCACTTCTTCTCTTC+AGG | - | chr4.4:14792629-14792648 | None:intergenic | 40.0% | |
| TGCTGCTGATAATACGTCAT+GGG | + | chr4.4:14792659-14792678 | MS.gene08964:CDS | 40.0% | |
| TTAAGGCTTCCTCCTTATCT+TGG | + | chr4.4:14791550-14791569 | MS.gene08964:intron | 40.0% | |
| ! | AACTTGTTCAGTGTTTGTGG+TGG | - | chr4.4:14792347-14792366 | None:intergenic | 40.0% |
| ! | CTGATATTTATCGGTGCTTG+AGG | + | chr4.4:14791807-14791826 | MS.gene08964:intron | 40.0% |
| ! | CTTCATTGTTTTCATCTGGG+AGG | + | chr4.4:14790744-14790763 | MS.gene08964:intron | 40.0% |
| ! | GACCCTTCATTGTTTTCATC+TGG | + | chr4.4:14790740-14790759 | MS.gene08964:intron | 40.0% |
| !! | ACTTGCAAGAAAGTATCACC+CGG | + | chr4.4:14789984-14790003 | MS.gene08964:CDS | 40.0% |
| !! | CTCAAGCACCGATAAATATC+AGG | - | chr4.4:14791809-14791828 | None:intergenic | 40.0% |
| !! | GGTACATTTTAGGTGTGCTT+TGG | + | chr4.4:14792018-14792037 | MS.gene08964:intron | 40.0% |
| !! | GGTGTAACTGACTTACGTTT+TGG | + | chr4.4:14792105-14792124 | MS.gene08964:intron | 40.0% |
| !! | TGAAGGTGGCTTTAAGCTTT+GGG | - | chr4.4:14789870-14789889 | None:intergenic | 40.0% |
| !! | TTGAAGGTGGCTTTAAGCTT+TGG | - | chr4.4:14789871-14789890 | None:intergenic | 40.0% |
| !!! | ATTTTGGCTCAGCCAAGATA+AGG | - | chr4.4:14791565-14791584 | None:intergenic | 40.0% |
| ACCAGAATCCGGTTCATTGA+TGG | + | chr4.4:14789939-14789958 | MS.gene08964:CDS | 45.0% | |
| CAAGAGGTTTATTCAGGTGC+AGG | + | chr4.4:14790041-14790060 | MS.gene08964:CDS | 45.0% | |
| CTGCACCTGAATAAACCTCT+TGG | - | chr4.4:14790043-14790062 | None:intergenic | 45.0% | |
| CTTAAAGCCACCTTCAACGA+CGG | + | chr4.4:14789874-14789893 | MS.gene08964:CDS | 45.0% | |
| CTTTGTCTGATCCTTCAAGG+AGG | + | chr4.4:14790076-14790095 | MS.gene08964:CDS | 45.0% | |
| GTATGACCCGAATGAGATTC+GGG | - | chr4.4:14789845-14789864 | None:intergenic | 45.0% | |
| TCCATCAATGAACCGGATTC+TGG | - | chr4.4:14789943-14789962 | None:intergenic | 45.0% | |
| TGCTGATAATACGTCATGGG+CGG | + | chr4.4:14792662-14792681 | MS.gene08964:CDS | 45.0% | |
| !!! | TAATAAATTATAAATTGTTT+TGG | - | chr4.4:14792050-14792069 | None:intergenic | 5.0% |
| !!! | TTAATAAATTTTCATAATTT+TGG | - | chr4.4:14791581-14791600 | None:intergenic | 5.0% |
| ACGGAGCTTCTACGATCTTC+TGG | + | chr4.4:14789912-14789931 | MS.gene08964:CDS | 50.0% | |
| CGGAGCTTCTACGATCTTCT+GGG | + | chr4.4:14789913-14789932 | MS.gene08964:CDS | 50.0% | |
| CGTTGGCAAACTCAACTCGA+TGG | + | chr4.4:14792603-14792622 | MS.gene08964:CDS | 50.0% | |
| CTTCTGGGCATACCAGAATC+CGG | + | chr4.4:14789928-14789947 | MS.gene08964:CDS | 50.0% | |
| GAGGTTTATTCAGGTGCAGG+AGG | + | chr4.4:14790044-14790063 | MS.gene08964:CDS | 50.0% | |
| GTATACTCTTCCACCCGATC+CGG | - | chr4.4:14790021-14790040 | None:intergenic | 50.0% | |
| TTGGCTCAGCCAAGATAAGG+AGG | - | chr4.4:14791562-14791581 | None:intergenic | 50.0% | |
| ! | AGTGTTTGTGGTGGTGAGCT+GGG | - | chr4.4:14792338-14792357 | None:intergenic | 50.0% |
| ! | GGGTGGAAGAGTATACCAAG+AGG | + | chr4.4:14790025-14790044 | MS.gene08964:CDS | 50.0% |
| !! | CTGGGAGGGTTGATTTGTCA+AGG | + | chr4.4:14790759-14790778 | MS.gene08964:intron | 50.0% |
| CGATCCGGTGGTGAAACATC+CGG | - | chr4.4:14790006-14790025 | None:intergenic | 55.0% | |
| CGGATGTTTCACCACCGGAT+CGG | + | chr4.4:14790004-14790023 | MS.gene08964:CDS | 55.0% | |
| GATCCGGTGGTGAAACATCC+GGG | - | chr4.4:14790005-14790024 | None:intergenic | 55.0% | |
| GGATGTTTCACCACCGGATC+GGG | + | chr4.4:14790005-14790024 | MS.gene08964:CDS | 55.0% | |
| TCACCCGGATGTTTCACCAC+CGG | + | chr4.4:14789999-14790018 | MS.gene08964:CDS | 55.0% | |
| ! | CAGTGTTTGTGGTGGTGAGC+TGG | - | chr4.4:14792339-14792358 | None:intergenic | 55.0% |
| CACAACGCCGTCGTTGAAGG+TGG | - | chr4.4:14789884-14789903 | None:intergenic | 60.0% | |
| CACCTTCAACGACGGCGTTG+TGG | + | chr4.4:14789882-14789901 | MS.gene08964:CDS | 60.0% | |
| CTCGAATACGCCAGCAGAGG+GGG | + | chr4.4:14792685-14792704 | MS.gene08964:CDS | 60.0% | |
| CTTCAACGACGGCGTTGTGG+CGG | + | chr4.4:14789885-14789904 | MS.gene08964:CDS | 60.0% | |
| GCTCGAATACGCCAGCAGAG+GGG | + | chr4.4:14792684-14792703 | MS.gene08964:CDS | 60.0% | |
| GGCTCGAATACGCCAGCAGA+GGG | + | chr4.4:14792683-14792702 | MS.gene08964:CDS | 60.0% | |
| TACTCTTCCACCCGATCCGG+TGG | - | chr4.4:14790018-14790037 | None:intergenic | 60.0% | |
| TCGAATACGCCAGCAGAGGG+GGG | + | chr4.4:14792686-14792705 | MS.gene08964:CDS | 60.0% | |
| TGTTTCACCACCGGATCGGG+TGG | + | chr4.4:14790008-14790027 | MS.gene08964:CDS | 60.0% | |
| CGAATACGCCAGCAGAGGGG+GGG | + | chr4.4:14792687-14792706 | MS.gene08964:CDS | 65.0% | |
| CGCCACAACGCCGTCGTTGA+AGG | - | chr4.4:14789887-14789906 | None:intergenic | 65.0% | |
| CGGCTCGAATACGCCAGCAG+AGG | + | chr4.4:14792682-14792701 | MS.gene08964:CDS | 65.0% | |
| ! | ACGGCGTTGTGGCGGAGGAA+CGG | + | chr4.4:14789893-14789912 | MS.gene08964:CDS | 65.0% |
| CAACGACGGCGTTGTGGCGG+AGG | + | chr4.4:14789888-14789907 | MS.gene08964:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14789838 | 14792716 | 14789838 | ID=MS.gene08964 |
| chr4.4 | mRNA | 14789838 | 14792716 | 14789838 | ID=MS.gene08964.t1;Parent=MS.gene08964 |
| chr4.4 | exon | 14789838 | 14790176 | 14789838 | ID=MS.gene08964.t1.exon1;Parent=MS.gene08964.t1 |
| chr4.4 | CDS | 14789838 | 14790176 | 14789838 | ID=cds.MS.gene08964.t1;Parent=MS.gene08964.t1 |
| chr4.4 | exon | 14792573 | 14792716 | 14792573 | ID=MS.gene08964.t1.exon2;Parent=MS.gene08964.t1 |
| chr4.4 | CDS | 14792573 | 14792716 | 14792573 | ID=cds.MS.gene08964.t1;Parent=MS.gene08964.t1 |
| Gene Sequence |
| Protein sequence |
