Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09085.t1 | XP_003629722.2 | 68.3 | 334 | 16 | 1 | 1 | 244 | 1 | 334 | 7.60E-83 | 317 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09085.t1 | Q9Y3A4 | 37.0 | 138 | 77 | 4 | 110 | 244 | 150 | 280 | 1.8e-11 | 71.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09085.t1 | G7LIM3 | 68.3 | 334 | 16 | 1 | 1 | 244 | 1 | 334 | 5.5e-83 | 317.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050303 | MS.gene09085 | 0.804553 | 2.04E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene09085 | 0.841411 | 4.83E-58 | -1.69E-46 |
| MS.gene052434 | MS.gene09085 | 0.802448 | 5.58E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene09085 | 0.804076 | 2.57E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene09085 | 0.807144 | 5.84E-50 | -1.69E-46 |
| MS.gene05517 | MS.gene09085 | 0.817905 | 2.59E-52 | -1.69E-46 |
| MS.gene056580 | MS.gene09085 | 0.807734 | 4.37E-50 | -1.69E-46 |
| MS.gene056631 | MS.gene09085 | 0.805208 | 1.49E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene09085 | 0.809704 | 1.66E-50 | -1.69E-46 |
| MS.gene057140 | MS.gene09085 | 0.80553 | 1.28E-49 | -1.69E-46 |
| MS.gene058084 | MS.gene09085 | 0.804755 | 1.85E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene09085 | 0.821061 | 4.93E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene09085 | 0.802986 | 4.32E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene09085 | 0.838937 | 2.14E-57 | -1.69E-46 |
| MS.gene060429 | MS.gene09085 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene060586 | MS.gene09085 | 0.828576 | 8.32E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09085.t1 | MTR_8g085800 | 84.211 | 247 | 35 | 2 | 2 | 244 | 88 | 334 | 4.61e-146 | 411 |
| MS.gene09085.t1 | MTR_8g085800 | 65.079 | 63 | 21 | 1 | 1 | 62 | 1 | 63 | 4.32e-15 | 73.9 |
| MS.gene09085.t1 | MTR_4g051625 | 89.855 | 207 | 21 | 0 | 38 | 244 | 126 | 332 | 4.44e-135 | 383 |
| MS.gene09085.t1 | MTR_4g051625 | 89.855 | 207 | 21 | 0 | 38 | 244 | 171 | 377 | 1.33e-134 | 384 |
| MS.gene09085.t1 | MTR_1g090650 | 79.618 | 157 | 32 | 0 | 88 | 244 | 32 | 188 | 2.36e-88 | 259 |
| MS.gene09085.t1 | MTR_8g085830 | 63.636 | 99 | 9 | 2 | 146 | 244 | 2 | 73 | 1.24e-32 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09085.t1 | AT5G38720 | 65.101 | 149 | 51 | 1 | 97 | 244 | 158 | 306 | 1.58e-69 | 216 |
| MS.gene09085.t1 | AT5G38720 | 65.101 | 149 | 51 | 1 | 97 | 244 | 165 | 313 | 1.96e-69 | 216 |
| MS.gene09085.t1 | AT5G38720 | 65.101 | 149 | 51 | 1 | 97 | 244 | 177 | 325 | 8.97e-69 | 214 |
Find 42 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAATCTCTACGCTTCT+TGG | 0.250763 | 4.4:-14227159 | None:intergenic |
| AAAGTTAGTAAAGGAGAAAA+AGG | 0.308720 | 4.4:+14226937 | MS.gene09085:CDS |
| AGCTGCTGCAGAAAATAAAT+TGG | 0.319112 | 4.4:+14229790 | MS.gene09085:CDS |
| GCAATCAACATCATTTAATA+AGG | 0.321323 | 4.4:-14230549 | None:intergenic |
| GACATTCATATTATTTCCTC+TGG | 0.367904 | 4.4:+14227387 | MS.gene09085:CDS |
| CCAACCCTGGTCTACTTTGA+TGG | 0.384521 | 4.4:-14227880 | None:intergenic |
| GGAGATGATGACTGCTCAAA+TGG | 0.443319 | 4.4:+14227408 | MS.gene09085:CDS |
| AAAAGAGAAGCTCAGAGAAA+TGG | 0.446445 | 4.4:+14229860 | MS.gene09085:CDS |
| AAAGAGAGAACAAAATCATC+AGG | 0.460936 | 4.4:+14227362 | MS.gene09085:CDS |
| TCCTTTACTAACTTTCATCA+TGG | 0.465522 | 4.4:-14226929 | None:intergenic |
| TCCATCCTCCTTCTGCAGCA+AGG | 0.468377 | 4.4:-14229691 | None:intergenic |
| CATGTCAAGATGAACAATAA+TGG | 0.472762 | 4.4:+14227024 | MS.gene09085:CDS |
| AAGTGGGATTGCTGTGGGCT+CGG | 0.474663 | 4.4:+14229760 | MS.gene09085:CDS |
| CCATCCTCCTTCTGCAGCAA+GGG | 0.496362 | 4.4:-14229690 | None:intergenic |
| CGCTGAAAGTGGGATTGCTG+TGG | 0.507910 | 4.4:+14229754 | MS.gene09085:CDS |
| GCCATGATGAAAGTTAGTAA+AGG | 0.525855 | 4.4:+14226928 | None:intergenic |
| AAAACTACTGACGCTGAAAG+TGG | 0.530432 | 4.4:+14229743 | MS.gene09085:CDS |
| CCATCAAAGTAGACCAGGGT+TGG | 0.532437 | 4.4:+14227880 | MS.gene09085:CDS |
| TGTTGCAAAACCTCCAACCC+TGG | 0.543861 | 4.4:-14227893 | None:intergenic |
| CCCTTGCTGCAGAAGGAGGA+TGG | 0.545811 | 4.4:+14229690 | MS.gene09085:CDS |
| GGAACTGCAGAGCAAATTTG+AGG | 0.547063 | 4.4:+14230479 | MS.gene09085:CDS |
| TCAAACCACAGAGTGGATCA+TGG | 0.547910 | 4.4:+14227853 | MS.gene09085:intron |
| TCAAAGTAGACCAGGGTTGG+AGG | 0.548210 | 4.4:+14227883 | MS.gene09085:CDS |
| AAAGAAGCCCTTGCTGCAGA+AGG | 0.553866 | 4.4:+14229683 | MS.gene09085:CDS |
| TGCTGCAGAAGGAGGATGGA+CGG | 0.572937 | 4.4:+14229694 | MS.gene09085:CDS |
| GAAGCCCTTGCTGCAGAAGG+AGG | 0.575071 | 4.4:+14229686 | MS.gene09085:CDS |
| AAACTACTGACGCTGAAAGT+GGG | 0.579773 | 4.4:+14229744 | MS.gene09085:CDS |
| GCTGAAAGTGGGATTGCTGT+GGG | 0.581833 | 4.4:+14229755 | MS.gene09085:CDS |
| GAATACCATCAAAGTAGACC+AGG | 0.581962 | 4.4:+14227875 | MS.gene09085:CDS |
| TTGTGATTCTAAAGAAGAGA+AGG | 0.583202 | 4.4:+14227127 | MS.gene09085:CDS |
| TCTAAAGAAGAGAAGGTCAA+AGG | 0.593515 | 4.4:+14227134 | MS.gene09085:CDS |
| GACGGTGGTTCAGCACCACA+AGG | 0.611340 | 4.4:+14229712 | MS.gene09085:CDS |
| TGGTTCAGCACCACAAGGGT+AGG | 0.619462 | 4.4:+14229717 | MS.gene09085:CDS |
| ATATAAATCAGATGGAGTAG+TGG | 0.628041 | 4.4:+14227100 | MS.gene09085:intron |
| TAGAGATTCTGATATTGAAG+CGG | 0.633558 | 4.4:+14227169 | MS.gene09085:CDS |
| TGCAACAGTTGAGAGCTGCT+AGG | 0.650823 | 4.4:+14230517 | MS.gene09085:CDS |
| TGAGCAGTCATCATCTCCAG+AGG | 0.681253 | 4.4:-14227403 | None:intergenic |
| ACTGCAGAGCAAATTTGAGG+AGG | 0.684181 | 4.4:+14230482 | MS.gene09085:CDS |
| AGAGTTTATATCTACTTACG+AGG | 0.689415 | 4.4:+14227925 | MS.gene09085:CDS |
| TGCAGAAGGAGGATGGACGG+TGG | 0.709610 | 4.4:+14229697 | MS.gene09085:CDS |
| AATACCATCAAAGTAGACCA+GGG | 0.721380 | 4.4:+14227876 | MS.gene09085:CDS |
| ACGGTGGTTCAGCACCACAA+GGG | 0.735362 | 4.4:+14229713 | MS.gene09085:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTATAATAAAATTCA+TGG | - | chr4.4:14228106-14228125 | None:intergenic | 10.0% |
| !! | TTAATATTTATTGTTATACA+TGG | + | chr4.4:14227768-14227787 | MS.gene09085:intron | 10.0% |
| !!! | TTTTAGTTTAAGAAATATTA+GGG | + | chr4.4:14230101-14230120 | MS.gene09085:intron | 10.0% |
| !! | ATAATTCAGTTTGTATTTAT+AGG | + | chr4.4:14228400-14228419 | MS.gene09085:intron | 15.0% |
| !! | ATTAAATATACAATAGCATA+TGG | - | chr4.4:14227753-14227772 | None:intergenic | 15.0% |
| !! | TAATTCAGTTTGTATTTATA+GGG | + | chr4.4:14228401-14228420 | MS.gene09085:intron | 15.0% |
| !! | TTAAATATACAATAGCATAT+GGG | - | chr4.4:14227752-14227771 | None:intergenic | 15.0% |
| !!! | AATGATTTTTTTTGTAATGT+CGG | + | chr4.4:14227511-14227530 | MS.gene09085:intron | 15.0% |
| !!! | CTTTTAGTTTAAGAAATATT+AGG | + | chr4.4:14230100-14230119 | MS.gene09085:intron | 15.0% |
| !!! | TAAAGGAAATTAATTTTGAA+AGG | - | chr4.4:14229317-14229336 | None:intergenic | 15.0% |
| !! | CAAGTTATTATAGTTGTATA+AGG | + | chr4.4:14228259-14228278 | MS.gene09085:intron | 20.0% |
| !! | CTTATACAACTATAATAACT+TGG | - | chr4.4:14228261-14228280 | None:intergenic | 20.0% |
| !! | TCATAACTGAATATTGAATA+AGG | - | chr4.4:14229592-14229611 | None:intergenic | 20.0% |
| !! | TTAAGAAATATTAGGGTTAT+TGG | + | chr4.4:14230108-14230127 | MS.gene09085:intron | 20.0% |
| !!! | AAAAGTTATTTTCCTTCATA+AGG | + | chr4.4:14228208-14228227 | MS.gene09085:intron | 20.0% |
| !!! | AAAGTTATTTTCCTTCATAA+GGG | + | chr4.4:14228209-14228228 | MS.gene09085:intron | 20.0% |
| !!! | AAATTATATGATTTTATGCG+AGG | + | chr4.4:14230320-14230339 | MS.gene09085:intron | 20.0% |
| !!! | AACAGTTTTGGTTTAAATAA+TGG | + | chr4.4:14229993-14230012 | MS.gene09085:intron | 20.0% |
| !!! | AATAATGGAAGATGTTAATT+AGG | + | chr4.4:14230008-14230027 | MS.gene09085:intron | 20.0% |
| !!! | ATAATGGAAGATGTTAATTA+GGG | + | chr4.4:14230009-14230028 | MS.gene09085:intron | 20.0% |
| !!! | CTTTTACATGTTATTTTTCA+AGG | - | chr4.4:14228193-14228212 | None:intergenic | 20.0% |
| !!! | GTATTTTATGAGTAAGAATA+GGG | + | chr4.4:14228665-14228684 | MS.gene09085:intron | 20.0% |
| !!! | TAAATTTAAACGAACAGTTT+TGG | + | chr4.4:14229981-14230000 | MS.gene09085:intron | 20.0% |
| !!! | TTGTATAATTACTAGTTCTA+TGG | + | chr4.4:14228167-14228186 | MS.gene09085:intron | 20.0% |
| !!! | TTTTTGATGTTGATGTTTTT+TGG | + | chr4.4:14228544-14228563 | MS.gene09085:intron | 20.0% |
| ! | AAACAAAGATAACTTCTATG+AGG | - | chr4.4:14227282-14227301 | None:intergenic | 25.0% |
| ! | AAAGTTAGTAAAGGAGAAAA+AGG | + | chr4.4:14226937-14226956 | MS.gene09085:CDS | 25.0% |
| ! | AGAATAATGCAAAATCATGA+AGG | + | chr4.4:14228709-14228728 | MS.gene09085:intron | 25.0% |
| ! | AGCTAAGAAAAAAAGAAGAA+AGG | + | chr4.4:14227320-14227339 | MS.gene09085:CDS | 25.0% |
| ! | ATCATAGAAACCAAGATATT+AGG | - | chr4.4:14230194-14230213 | None:intergenic | 25.0% |
| ! | CAAAATTAATTTCCTTTAGC+AGG | + | chr4.4:14229319-14229338 | MS.gene09085:intron | 25.0% |
| ! | GAGAGTAATTGATAGAAATA+TGG | + | chr4.4:14228643-14228662 | MS.gene09085:intron | 25.0% |
| ! | TAAGAAAAAAAGAAGAAAGG+AGG | + | chr4.4:14227323-14227342 | MS.gene09085:CDS | 25.0% |
| ! | TAATGGAAGATGTTAATTAG+GGG | + | chr4.4:14230010-14230029 | MS.gene09085:intron | 25.0% |
| ! | TCATAGAAACCAAGATATTA+GGG | - | chr4.4:14230193-14230212 | None:intergenic | 25.0% |
| ! | TCATCTACGATATGAATATA+TGG | - | chr4.4:14229912-14229931 | None:intergenic | 25.0% |
| ! | TGGATACTGAATATTGAATA+TGG | - | chr4.4:14229454-14229473 | None:intergenic | 25.0% |
| ! | TTGAGATGAGAGATTATAAA+GGG | - | chr4.4:14229514-14229533 | None:intergenic | 25.0% |
| ! | TTTCTCTGATATAAATCAGA+TGG | + | chr4.4:14227092-14227111 | MS.gene09085:intron | 25.0% |
| !! | AAATACAAGGAGAACATTTT+GGG | - | chr4.4:14228848-14228867 | None:intergenic | 25.0% |
| !! | ATATTTGTGTGTTTTTCTCT+TGG | + | chr4.4:14229043-14229062 | MS.gene09085:intron | 25.0% |
| !! | ATTAATAAGCCGTTTAGTTT+GGG | - | chr4.4:14229539-14229558 | None:intergenic | 25.0% |
| !! | GGTATTTTATGAGTAAGAAT+AGG | + | chr4.4:14228664-14228683 | MS.gene09085:intron | 25.0% |
| !! | TAATGTTTTCAGCAAATACA+AGG | - | chr4.4:14228861-14228880 | None:intergenic | 25.0% |
| !! | TTTGAGATGAGAGATTATAA+AGG | - | chr4.4:14229515-14229534 | None:intergenic | 25.0% |
| !! | TTTTGTGAATCTTAACTTAC+TGG | - | chr4.4:14230231-14230250 | None:intergenic | 25.0% |
| !!! | AGAAAGTGCTTTTTATTACA+AGG | - | chr4.4:14227203-14227222 | None:intergenic | 25.0% |
| !!! | AGAAGTTATCTTTGTTTTGT+AGG | + | chr4.4:14227285-14227304 | MS.gene09085:intron | 25.0% |
| !!! | CATTATTTAGTTTTTGACTG+GGG | + | chr4.4:14227825-14227844 | MS.gene09085:intron | 25.0% |
| !!! | GCATTATTTAGTTTTTGACT+GGG | + | chr4.4:14227824-14227843 | MS.gene09085:intron | 25.0% |
| !!! | GTTTCCATGCAATTATTTTT+CGG | + | chr4.4:14229639-14229658 | MS.gene09085:intron | 25.0% |
| !!! | TGCATTATTTAGTTTTTGAC+TGG | + | chr4.4:14227823-14227842 | MS.gene09085:intron | 25.0% |
| AAAAAGAAACAAACAGGAGT+TGG | + | chr4.4:14229815-14229834 | MS.gene09085:CDS | 30.0% | |
| AAAGAGAGAACAAAATCATC+AGG | + | chr4.4:14227362-14227381 | MS.gene09085:CDS | 30.0% | |
| AACACTTAAGTATCACAAAG+TGG | - | chr4.4:14229562-14229581 | None:intergenic | 30.0% | |
| AACTTCTAATACTGTGTCTA+TGG | - | chr4.4:14228465-14228484 | None:intergenic | 30.0% | |
| AATGGAAGATGTTAATTAGG+GGG | + | chr4.4:14230011-14230030 | MS.gene09085:intron | 30.0% | |
| AATTACTGTATGTATATGCG+TGG | - | chr4.4:14227580-14227599 | None:intergenic | 30.0% | |
| ACCAAAATAAGTAACAGATG+TGG | - | chr4.4:14229621-14229640 | None:intergenic | 30.0% | |
| AGAGTTTATATCTACTTACG+AGG | + | chr4.4:14227925-14227944 | MS.gene09085:CDS | 30.0% | |
| AGTTAGTAAGTCTGTTAGTT+TGG | - | chr4.4:14229402-14229421 | None:intergenic | 30.0% | |
| ATATAAATCAGATGGAGTAG+TGG | + | chr4.4:14227100-14227119 | MS.gene09085:intron | 30.0% | |
| ATCAATTACTCTCTTTCTTG+AGG | - | chr4.4:14228636-14228655 | None:intergenic | 30.0% | |
| ATCTACTTACGAGGAAAAAT+TGG | + | chr4.4:14227934-14227953 | MS.gene09085:CDS | 30.0% | |
| ATGATCGTTATCTTGTTGAT+TGG | + | chr4.4:14230287-14230306 | MS.gene09085:intron | 30.0% | |
| CATGTCAAGATGAACAATAA+TGG | + | chr4.4:14227024-14227043 | MS.gene09085:CDS | 30.0% | |
| CCAAAATAAGTAACAGATGT+GGG | - | chr4.4:14229620-14229639 | None:intergenic | 30.0% | |
| CTATGAGGAAAATGAATGTA+TGG | - | chr4.4:14227267-14227286 | None:intergenic | 30.0% | |
| GAAAATGAATGTATGGCTTT+AGG | - | chr4.4:14227260-14227279 | None:intergenic | 30.0% | |
| GACATTCATATTATTTCCTC+TGG | + | chr4.4:14227387-14227406 | MS.gene09085:CDS | 30.0% | |
| GATTAATAAGCCGTTTAGTT+TGG | - | chr4.4:14229540-14229559 | None:intergenic | 30.0% | |
| GCATAAAAAGTGACTTTATC+TGG | + | chr4.4:14228575-14228594 | MS.gene09085:intron | 30.0% | |
| TAGAGATTCTGATATTGAAG+CGG | + | chr4.4:14227169-14227188 | MS.gene09085:CDS | 30.0% | |
| TATAAGGTTTAACGATGCTT+TGG | + | chr4.4:14228275-14228294 | MS.gene09085:intron | 30.0% | |
| TATTCAAATTATACGCATGC+AGG | - | chr4.4:14228506-14228525 | None:intergenic | 30.0% | |
| TCAGGATTTCTGAATTAGTT+AGG | - | chr4.4:14228792-14228811 | None:intergenic | 30.0% | |
| TCTTCCTTAAAGCAAAATAG+AGG | + | chr4.4:14227980-14227999 | MS.gene09085:intron | 30.0% | |
| TTGACCGAAAAATAATTGCA+TGG | - | chr4.4:14229646-14229665 | None:intergenic | 30.0% | |
| ! | AAAGCTTTTCTGTTGCTAAT+GGG | + | chr4.4:14228336-14228355 | MS.gene09085:intron | 30.0% |
| ! | AATACAAGGAGAACATTTTG+GGG | - | chr4.4:14228847-14228866 | None:intergenic | 30.0% |
| ! | AATCTTTTTCTTCTTTTCCC+CGG | - | chr4.4:14226971-14226990 | None:intergenic | 30.0% |
| ! | CAAATACAAGGAGAACATTT+TGG | - | chr4.4:14228849-14228868 | None:intergenic | 30.0% |
| ! | CATGCTAATGCAAATTTTGA+TGG | - | chr4.4:14230047-14230066 | None:intergenic | 30.0% |
| ! | TCTCTCTTTTCTGATGATTT+TGG | - | chr4.4:14227351-14227370 | None:intergenic | 30.0% |
| ! | TTATTTTCCTTCATAAGGGA+GGG | + | chr4.4:14228213-14228232 | MS.gene09085:intron | 30.0% |
| ! | TTGTGATTCTAAAGAAGAGA+AGG | + | chr4.4:14227127-14227146 | MS.gene09085:CDS | 30.0% |
| !! | AACTCCTGTTTGTTTCTTTT+TGG | - | chr4.4:14229816-14229835 | None:intergenic | 30.0% |
| !! | AATTATTTTTCGGTCAATGC+AGG | + | chr4.4:14229649-14229668 | MS.gene09085:intron | 30.0% |
| !! | AGAAAGGTGTTAGAACTTTA+GGG | - | chr4.4:14229274-14229293 | None:intergenic | 30.0% |
| !! | ATTATAAAGGGCATTGTTGT+GGG | - | chr4.4:14229502-14229521 | None:intergenic | 30.0% |
| !! | TTAATAAGCCGTTTAGTTTG+GGG | - | chr4.4:14229538-14229557 | None:intergenic | 30.0% |
| !!! | AGCTAGCTAAATAGTTTTAG+AGG | + | chr4.4:14228980-14228999 | MS.gene09085:intron | 30.0% |
| !!! | ATGTTGATGTTTTTTGGCTT+AGG | + | chr4.4:14228550-14228569 | MS.gene09085:intron | 30.0% |
| !!! | TAGCTAAATAGTTTTAGAGG+TGG | + | chr4.4:14228983-14229002 | MS.gene09085:intron | 30.0% |
| AAAAGAGAAGCTCAGAGAAA+TGG | + | chr4.4:14229860-14229879 | MS.gene09085:CDS | 35.0% | |
| AATACCATCAAAGTAGACCA+GGG | + | chr4.4:14227876-14227895 | MS.gene09085:CDS | 35.0% | |
| AATCTTAACTTACTGGCAGA+AGG | - | chr4.4:14230224-14230243 | None:intergenic | 35.0% | |
| ACCTTTCTCTTCCTTAAGTT+GGG | + | chr4.4:14229286-14229305 | MS.gene09085:intron | 35.0% | |
| ACTATTGTTAGATGTCCATC+AGG | - | chr4.4:14228823-14228842 | None:intergenic | 35.0% | |
| AGCCATGGAACAAACAAAAA+GGG | + | chr4.4:14229192-14229211 | MS.gene09085:intron | 35.0% | |
| AGCTGCTGCAGAAAATAAAT+TGG | + | chr4.4:14229790-14229809 | MS.gene09085:CDS | 35.0% | |
| AGGGTTATCTGACTATAATC+AGG | - | chr4.4:14228061-14228080 | None:intergenic | 35.0% | |
| ATACAGATGAGAGCCAATAA+TGG | + | chr4.4:14228920-14228939 | MS.gene09085:intron | 35.0% | |
| ATCTCAAACCCCAAACTAAA+CGG | + | chr4.4:14229527-14229546 | MS.gene09085:intron | 35.0% | |
| ATCTTAACTTACTGGCAGAA+GGG | - | chr4.4:14230223-14230242 | None:intergenic | 35.0% | |
| ATGGAAGATGTTAATTAGGG+GGG | + | chr4.4:14230012-14230031 | MS.gene09085:intron | 35.0% | |
| CATTATTCTTCTGCAATCAG+GGG | - | chr4.4:14228698-14228717 | None:intergenic | 35.0% | |
| CCTTAAAGCAAAATAGAGGT+TGG | + | chr4.4:14227984-14228003 | MS.gene09085:intron | 35.0% | |
| CTAAATATGCTGTTAGGATG+TGG | + | chr4.4:14228374-14228393 | MS.gene09085:intron | 35.0% | |
| GAGAAACATCACAGAAGATA+AGG | - | chr4.4:14230166-14230185 | None:intergenic | 35.0% | |
| GAGTGAACTCATAGATAACT+TGG | + | chr4.4:14229104-14229123 | MS.gene09085:intron | 35.0% | |
| GATTATCCCCACTGATAAAA+GGG | - | chr4.4:14228080-14228099 | None:intergenic | 35.0% | |
| GCATTATTCTTCTGCAATCA+GGG | - | chr4.4:14228699-14228718 | None:intergenic | 35.0% | |
| GGTAATCATGTATCACAGAT+TGG | - | chr4.4:14228897-14228916 | None:intergenic | 35.0% | |
| GTATGCAAAATGAAGCTTGA+AGG | - | chr4.4:14229244-14229263 | None:intergenic | 35.0% | |
| GTGAGATGAGAGATTATGAA+GGG | - | chr4.4:14229376-14229395 | None:intergenic | 35.0% | |
| TCAATATTCAGTATCCAAGC+AGG | + | chr4.4:14229457-14229476 | MS.gene09085:intron | 35.0% | |
| TCTAAAGAAGAGAAGGTCAA+AGG | + | chr4.4:14227134-14227153 | MS.gene09085:CDS | 35.0% | |
| TGAGATAGTTGGAAGAAACA+TGG | - | chr4.4:14228759-14228778 | None:intergenic | 35.0% | |
| TGATTATCCCCACTGATAAA+AGG | - | chr4.4:14228081-14228100 | None:intergenic | 35.0% | |
| TGCATTATTCTTCTGCAATC+AGG | - | chr4.4:14228700-14228719 | None:intergenic | 35.0% | |
| TGTGAGATGAGAGATTATGA+AGG | - | chr4.4:14229377-14229396 | None:intergenic | 35.0% | |
| TTACGAGGAAAAATTGGAAG+AGG | + | chr4.4:14227940-14227959 | MS.gene09085:CDS | 35.0% | |
| TTCTCACTTCCCTAATATCT+TGG | + | chr4.4:14230181-14230200 | MS.gene09085:intron | 35.0% | |
| TTGGCCAAAAAGAAACAAAC+AGG | + | chr4.4:14229809-14229828 | MS.gene09085:CDS | 35.0% | |
| ! | AAGCTTTTCTGTTGCTAATG+GGG | + | chr4.4:14228337-14228356 | MS.gene09085:intron | 35.0% |
| ! | AGATAACCCTTTTATCAGTG+GGG | + | chr4.4:14228071-14228090 | MS.gene09085:intron | 35.0% |
| ! | ATACAAGGAGAACATTTTGG+GGG | - | chr4.4:14228846-14228865 | None:intergenic | 35.0% |
| ! | ATTTCTTTAGAGACATCCAC+GGG | - | chr4.4:14229019-14229038 | None:intergenic | 35.0% |
| ! | CAAAGCTTTTCTGTTGCTAA+TGG | + | chr4.4:14228335-14228354 | MS.gene09085:intron | 35.0% |
| ! | CAGATAACCCTTTTATCAGT+GGG | + | chr4.4:14228070-14228089 | MS.gene09085:intron | 35.0% |
| ! | CCAACCTCTATTTTGCTTTA+AGG | - | chr4.4:14227987-14228006 | None:intergenic | 35.0% |
| ! | GATTTCTTTAGAGACATCCA+CGG | - | chr4.4:14229020-14229039 | None:intergenic | 35.0% |
| ! | GCTCATTAAAGTACCCATTT+CGG | - | chr4.4:14229175-14229194 | None:intergenic | 35.0% |
| ! | GTAAAGGAGAAAAAGGCATA+CGG | + | chr4.4:14226944-14226963 | MS.gene09085:CDS | 35.0% |
| ! | TCAACATCAAAAAGCACGTA+AGG | - | chr4.4:14228537-14228556 | None:intergenic | 35.0% |
| ! | TCAGATAACCCTTTTATCAG+TGG | + | chr4.4:14228069-14228088 | MS.gene09085:intron | 35.0% |
| !! | CCCACATCTGTTACTTATTT+TGG | + | chr4.4:14229617-14229636 | MS.gene09085:intron | 35.0% |
| !! | GAGAAAGGTGTTAGAACTTT+AGG | - | chr4.4:14229275-14229294 | None:intergenic | 35.0% |
| !! | GATTATAAAGGGCATTGTTG+TGG | - | chr4.4:14229503-14229522 | None:intergenic | 35.0% |
| !! | GTTATTTTCCTTCATAAGGG+AGG | + | chr4.4:14228212-14228231 | MS.gene09085:intron | 35.0% |
| !! | TTCCCTTTTTGTTTGTTCCA+TGG | - | chr4.4:14229197-14229216 | None:intergenic | 35.0% |
| !! | TTGGTGCTAAATATGCTGTT+AGG | + | chr4.4:14228368-14228387 | MS.gene09085:intron | 35.0% |
| !!! | GAGCTTCTCTTTTTTGAAAG+CGG | - | chr4.4:14229853-14229872 | None:intergenic | 35.0% |
| AAAACTACTGACGCTGAAAG+TGG | + | chr4.4:14229743-14229762 | MS.gene09085:CDS | 40.0% | |
| AAACTACTGACGCTGAAAGT+GGG | + | chr4.4:14229744-14229763 | MS.gene09085:CDS | 40.0% | |
| AAGATGTTAATTAGGGGGGT+TGG | + | chr4.4:14230016-14230035 | MS.gene09085:intron | 40.0% | |
| AAGGAGGAATAGGTCTGTAT+TGG | - | chr4.4:14229225-14229244 | None:intergenic | 40.0% | |
| AATATGCTGTTAGGATGTGG+AGG | + | chr4.4:14228377-14228396 | MS.gene09085:intron | 40.0% | |
| AGAAAGTTCAACAATGTGCG+AGG | - | chr4.4:14227077-14227096 | None:intergenic | 40.0% | |
| AGATGTTAATTAGGGGGGTT+GGG | + | chr4.4:14230017-14230036 | MS.gene09085:intron | 40.0% | |
| AGGAGGAATAGGTCTGTATT+GGG | - | chr4.4:14229224-14229243 | None:intergenic | 40.0% | |
| ATCAGAATCTCTACGCTTCT+TGG | - | chr4.4:14227162-14227181 | None:intergenic | 40.0% | |
| ATGAAGCTTGAAGGAGGAAT+AGG | - | chr4.4:14229235-14229254 | None:intergenic | 40.0% | |
| ATGGGTACTTTAATGAGCCA+TGG | + | chr4.4:14229177-14229196 | MS.gene09085:intron | 40.0% | |
| ATGTCTACATGCTCACTGAT+AGG | - | chr4.4:14227680-14227699 | None:intergenic | 40.0% | |
| ATTTCCTTTAGCAGGACGAA+TGG | + | chr4.4:14229327-14229346 | MS.gene09085:intron | 40.0% | |
| CACCTTTCTCTTCCTTAAGT+TGG | + | chr4.4:14229285-14229304 | MS.gene09085:intron | 40.0% | |
| CTGAAAACATTATTCCGCCA+AGG | + | chr4.4:14228869-14228888 | MS.gene09085:intron | 40.0% | |
| GAATACCATCAAAGTAGACC+AGG | + | chr4.4:14227875-14227894 | MS.gene09085:CDS | 40.0% | |
| GAGCCATGGAACAAACAAAA+AGG | + | chr4.4:14229191-14229210 | MS.gene09085:intron | 40.0% | |
| GCGTGGCAACTATTGTAAAT+TGG | - | chr4.4:14227563-14227582 | None:intergenic | 40.0% | |
| GCTGTGTTAGTCATATAAGC+AGG | + | chr4.4:14230132-14230151 | MS.gene09085:intron | 40.0% | |
| GTTAGTTGAGCTGAGATAGT+TGG | - | chr4.4:14228770-14228789 | None:intergenic | 40.0% | |
| TGCAAAATGAAGCTTGAAGG+AGG | - | chr4.4:14229241-14229260 | None:intergenic | 40.0% | |
| TGCTAATGGGGTATGTTAGT+TGG | + | chr4.4:14228349-14228368 | MS.gene09085:intron | 40.0% | |
| TGGAAGAAACATGGCATGTT+GGG | - | chr4.4:14228750-14228769 | None:intergenic | 40.0% | |
| TGTATCACAGATTGGAACCT+TGG | - | chr4.4:14228889-14228908 | None:intergenic | 40.0% | |
| TTGACCATGACATCCGAAAT+GGG | + | chr4.4:14229159-14229178 | MS.gene09085:intron | 40.0% | |
| TTGGAAGAAACATGGCATGT+TGG | - | chr4.4:14228751-14228770 | None:intergenic | 40.0% | |
| ! | ATTGGCTCTCATCTGTATCT+TGG | - | chr4.4:14228918-14228937 | None:intergenic | 40.0% |
| ! | CTGATTTAAGACAGCGTCTA+GGG | - | chr4.4:14230385-14230404 | None:intergenic | 40.0% |
| ! | TAGTTTTCTTCCTACCCTTG+TGG | - | chr4.4:14229730-14229749 | None:intergenic | 40.0% |
| ! | TCTTTCAACCTGTTGACTAC+TGG | + | chr4.4:14227715-14227734 | MS.gene09085:intron | 40.0% |
| ! | TGATTTAAGACAGCGTCTAG+GGG | - | chr4.4:14230384-14230403 | None:intergenic | 40.0% |
| ! | TGTTTTGCTTGCAGAGCTAA+TGG | + | chr4.4:14230458-14230477 | MS.gene09085:intron | 40.0% |
| !! | ATTATGAAGGGCATTGTCGT+GGG | - | chr4.4:14229364-14229383 | None:intergenic | 40.0% |
| ACCACATTCCAGTAGTCAAC+AGG | - | chr4.4:14227726-14227745 | None:intergenic | 45.0% | |
| ACTGCAGAGCAAATTTGAGG+AGG | + | chr4.4:14230482-14230501 | MS.gene09085:CDS | 45.0% | |
| AGCATCAAGTGCTAAGCACA+TGG | - | chr4.4:14228303-14228322 | None:intergenic | 45.0% | |
| AGTACCCATTTCGGATGTCA+TGG | - | chr4.4:14229166-14229185 | None:intergenic | 45.0% | |
| ATCACAGATTGGAACCTTGG+CGG | - | chr4.4:14228886-14228905 | None:intergenic | 45.0% | |
| ATGCTCACTGATAGGCAGTA+GGG | - | chr4.4:14227672-14227691 | None:intergenic | 45.0% | |
| ATGTTAATTAGGGGGGTTGG+GGG | + | chr4.4:14230019-14230038 | MS.gene09085:intron | 45.0% | |
| CATTTCGGATGTCATGGTCA+AGG | - | chr4.4:14229160-14229179 | None:intergenic | 45.0% | |
| CGAGGCTCATTCATGCTTTA+CGG | + | chr4.4:14230338-14230357 | MS.gene09085:intron | 45.0% | |
| CTTGACCATGACATCCGAAA+TGG | + | chr4.4:14229158-14229177 | MS.gene09085:intron | 45.0% | |
| GAAACATGGCATGTTGGGTA+AGG | - | chr4.4:14228745-14228764 | None:intergenic | 45.0% | |
| GAAAGGTGAAGCCCAACTTA+AGG | - | chr4.4:14229300-14229319 | None:intergenic | 45.0% | |
| GATGTTAATTAGGGGGGTTG+GGG | + | chr4.4:14230018-14230037 | MS.gene09085:intron | 45.0% | |
| GCCCAACTTAAGGAAGAGAA+AGG | - | chr4.4:14229290-14229309 | None:intergenic | 45.0% | |
| GCTATCGTTGTGAGCAATGA+AGG | - | chr4.4:14228963-14228982 | None:intergenic | 45.0% | |
| GGAACTGCAGAGCAAATTTG+AGG | + | chr4.4:14230479-14230498 | MS.gene09085:CDS | 45.0% | |
| GGAATACTCAAACCACAGAG+TGG | + | chr4.4:14227846-14227865 | MS.gene09085:intron | 45.0% | |
| GGAGATGATGACTGCTCAAA+TGG | + | chr4.4:14227408-14227427 | MS.gene09085:CDS | 45.0% | |
| GTATTCCATGATCCACTCTG+TGG | - | chr4.4:14227861-14227880 | None:intergenic | 45.0% | |
| TAGATGTCCATCAGGACTGT+TGG | - | chr4.4:14228815-14228834 | None:intergenic | 45.0% | |
| TCAAACCACAGAGTGGATCA+TGG | + | chr4.4:14227853-14227872 | MS.gene09085:intron | 45.0% | |
| TTGTGAGCAATGAAGGTCTG+TGG | - | chr4.4:14228956-14228975 | None:intergenic | 45.0% | |
| ! | ACCTGTTGACTACTGGAATG+TGG | + | chr4.4:14227722-14227741 | MS.gene09085:intron | 45.0% |
| ! | GCTGATTTAAGACAGCGTCT+AGG | - | chr4.4:14230386-14230405 | None:intergenic | 45.0% |
| !! | CATTGTTGTGGGAGAGTACT+AGG | - | chr4.4:14229491-14229510 | None:intergenic | 45.0% |
| !! | GATTATGAAGGGCATTGTCG+TGG | - | chr4.4:14229365-14229384 | None:intergenic | 45.0% |
| !!! | ATAAAATCATATAATTTTTA+AGG | - | chr4.4:14230317-14230336 | None:intergenic | 5.0% |
| AAAGAAGCCCTTGCTGCAGA+AGG | + | chr4.4:14229683-14229702 | MS.gene09085:CDS | 50.0% | |
| ACATGGCATGTTGGGTAAGG+AGG | - | chr4.4:14228742-14228761 | None:intergenic | 50.0% | |
| ACTAGGTCTTTCGTCCTGCT+TGG | - | chr4.4:14229474-14229493 | None:intergenic | 50.0% | |
| AGAGCCAATAATGGCCTCTG+GGG | + | chr4.4:14228929-14228948 | MS.gene09085:intron | 50.0% | |
| AGTAGGGTGGATGTTGGCAA+AGG | - | chr4.4:14227656-14227675 | None:intergenic | 50.0% | |
| ATAGGCAGTAGGGTGGATGT+TGG | - | chr4.4:14227662-14227681 | None:intergenic | 50.0% | |
| ATCCTGACCAACAGTCCTGA+TGG | + | chr4.4:14228805-14228824 | MS.gene09085:intron | 50.0% | |
| CATGCTCACTGATAGGCAGT+AGG | - | chr4.4:14227673-14227692 | None:intergenic | 50.0% | |
| CCAACCCTGGTCTACTTTGA+TGG | - | chr4.4:14227883-14227902 | None:intergenic | 50.0% | |
| CCATCAAAGTAGACCAGGGT+TGG | + | chr4.4:14227880-14227899 | MS.gene09085:CDS | 50.0% | |
| CCTTCATAAGGGAGGGCTAA+GGG | + | chr4.4:14228220-14228239 | MS.gene09085:intron | 50.0% | |
| GAGAGCCAATAATGGCCTCT+GGG | + | chr4.4:14228928-14228947 | MS.gene09085:intron | 50.0% | |
| GCTGAAAGTGGGATTGCTGT+GGG | + | chr4.4:14229755-14229774 | MS.gene09085:CDS | 50.0% | |
| GTCTAGGGGTGAGGGAAAAT+GGG | - | chr4.4:14230370-14230389 | None:intergenic | 50.0% | |
| GTGGCACATGTTTCAGCAAG+AGG | + | chr4.4:14229079-14229098 | MS.gene09085:intron | 50.0% | |
| TAGGCCATTCGTCCTGCTAA+AGG | - | chr4.4:14229334-14229353 | None:intergenic | 50.0% | |
| TCAAAGTAGACCAGGGTTGG+AGG | + | chr4.4:14227883-14227902 | MS.gene09085:CDS | 50.0% | |
| TCCTTCATAAGGGAGGGCTA+AGG | + | chr4.4:14228219-14228238 | MS.gene09085:intron | 50.0% | |
| TCTAGGGGTGAGGGAAAATG+GGG | - | chr4.4:14230369-14230388 | None:intergenic | 50.0% | |
| TGAGAGCCAATAATGGCCTC+TGG | + | chr4.4:14228927-14228946 | MS.gene09085:intron | 50.0% | |
| TGAGCAGTCATCATCTCCAG+AGG | - | chr4.4:14227406-14227425 | None:intergenic | 50.0% | |
| TGCAACAGTTGAGAGCTGCT+AGG | + | chr4.4:14230517-14230536 | MS.gene09085:CDS | 50.0% | |
| TGTTGCAAAACCTCCAACCC+TGG | - | chr4.4:14227896-14227915 | None:intergenic | 50.0% | |
| ! | AGAAAAAGGCATACGGACCG+GGG | + | chr4.4:14226951-14226970 | MS.gene09085:CDS | 50.0% |
| ! | AGGTGGCTTCTATTTTCCCG+TGG | + | chr4.4:14229000-14229019 | MS.gene09085:intron | 50.0% |
| ! | GAGAAAAAGGCATACGGACC+GGG | + | chr4.4:14226950-14226969 | MS.gene09085:CDS | 50.0% |
| ! | GGAGAAAAAGGCATACGGAC+CGG | + | chr4.4:14226949-14226968 | MS.gene09085:CDS | 50.0% |
| !! | CATTGTCGTGGGAGAGTACT+AGG | - | chr4.4:14229353-14229372 | None:intergenic | 50.0% |
| AAGACAGCGTCTAGGGGTGA+GGG | - | chr4.4:14230378-14230397 | None:intergenic | 55.0% | |
| AAGTGGGATTGCTGTGGGCT+CGG | + | chr4.4:14229760-14229779 | MS.gene09085:CDS | 55.0% | |
| ACGGTGGTTCAGCACCACAA+GGG | + | chr4.4:14229713-14229732 | MS.gene09085:CDS | 55.0% | |
| CCATCCTCCTTCTGCAGCAA+GGG | - | chr4.4:14229693-14229712 | None:intergenic | 55.0% | |
| CCCTTAGCCCTCCCTTATGA+AGG | - | chr4.4:14228223-14228242 | None:intergenic | 55.0% | |
| CGCTGAAAGTGGGATTGCTG+TGG | + | chr4.4:14229754-14229773 | MS.gene09085:CDS | 55.0% | |
| CGTCTAGGGGTGAGGGAAAA+TGG | - | chr4.4:14230371-14230390 | None:intergenic | 55.0% | |
| CTCACTGATAGGCAGTAGGG+TGG | - | chr4.4:14227669-14227688 | None:intergenic | 55.0% | |
| GTCCATCAGGACTGTTGGTC+AGG | - | chr4.4:14228810-14228829 | None:intergenic | 55.0% | |
| TAAGACAGCGTCTAGGGGTG+AGG | - | chr4.4:14230379-14230398 | None:intergenic | 55.0% | |
| TCCATCCTCCTTCTGCAGCA+AGG | - | chr4.4:14229694-14229713 | None:intergenic | 55.0% | |
| TGCTGCAGAAGGAGGATGGA+CGG | + | chr4.4:14229694-14229713 | MS.gene09085:CDS | 55.0% | |
| TGGACCCCAGAGGCCATTAT+TGG | - | chr4.4:14228936-14228955 | None:intergenic | 55.0% | |
| TGGTTCAGCACCACAAGGGT+AGG | + | chr4.4:14229717-14229736 | MS.gene09085:CDS | 55.0% | |
| CCCTTGCTGCAGAAGGAGGA+TGG | + | chr4.4:14229690-14229709 | MS.gene09085:CDS | 60.0% | |
| GAAGCCCTTGCTGCAGAAGG+AGG | + | chr4.4:14229686-14229705 | MS.gene09085:CDS | 60.0% | |
| GACGGTGGTTCAGCACCACA+AGG | + | chr4.4:14229712-14229731 | MS.gene09085:CDS | 60.0% | |
| TCTTGGTCGTTGCTGCAGCG+TGG | + | chr4.4:14229060-14229079 | MS.gene09085:intron | 60.0% | |
| TGAAGGTCTGTGGACCCCAG+AGG | - | chr4.4:14228946-14228965 | None:intergenic | 60.0% | |
| TGCAGAAGGAGGATGGACGG+TGG | + | chr4.4:14229697-14229716 | MS.gene09085:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 14226931 | 14230557 | 14226931 | ID=MS.gene09085 |
| chr4.4 | mRNA | 14226931 | 14230557 | 14226931 | ID=MS.gene09085.t1;Parent=MS.gene09085 |
| chr4.4 | exon | 14226931 | 14227045 | 14226931 | ID=MS.gene09085.t1.exon1;Parent=MS.gene09085.t1 |
| chr4.4 | CDS | 14226931 | 14227045 | 14226931 | ID=cds.MS.gene09085.t1;Parent=MS.gene09085.t1 |
| chr4.4 | exon | 14227111 | 14227203 | 14227111 | ID=MS.gene09085.t1.exon2;Parent=MS.gene09085.t1 |
| chr4.4 | CDS | 14227111 | 14227203 | 14227111 | ID=cds.MS.gene09085.t1;Parent=MS.gene09085.t1 |
| chr4.4 | exon | 14227307 | 14227438 | 14227307 | ID=MS.gene09085.t1.exon3;Parent=MS.gene09085.t1 |
| chr4.4 | CDS | 14227307 | 14227438 | 14227307 | ID=cds.MS.gene09085.t1;Parent=MS.gene09085.t1 |
| chr4.4 | exon | 14227864 | 14227961 | 14227864 | ID=MS.gene09085.t1.exon4;Parent=MS.gene09085.t1 |
| chr4.4 | CDS | 14227864 | 14227961 | 14227864 | ID=cds.MS.gene09085.t1;Parent=MS.gene09085.t1 |
| chr4.4 | exon | 14229671 | 14229881 | 14229671 | ID=MS.gene09085.t1.exon5;Parent=MS.gene09085.t1 |
| chr4.4 | CDS | 14229671 | 14229881 | 14229671 | ID=cds.MS.gene09085.t1;Parent=MS.gene09085.t1 |
| chr4.4 | exon | 14230472 | 14230557 | 14230472 | ID=MS.gene09085.t1.exon6;Parent=MS.gene09085.t1 |
| chr4.4 | CDS | 14230472 | 14230557 | 14230472 | ID=cds.MS.gene09085.t1;Parent=MS.gene09085.t1 |
| Gene Sequence |
| Protein sequence |
