Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09295.t1 | XP_003629676.1 | 95.5 | 287 | 13 | 0 | 1 | 287 | 29 | 315 | 9.40E-141 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09295.t1 | Q8K245 | 25.3 | 289 | 159 | 8 | 3 | 287 | 195 | 430 | 1.5e-06 | 55.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09295.t1 | G7LHV8 | 95.5 | 287 | 13 | 0 | 1 | 287 | 29 | 315 | 6.8e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene09295 | 0.811956 | 5.40E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene09295 | 0.802146 | 6.44E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene09295 | 0.810676 | 1.02E-50 | -1.69E-46 |
| MS.gene051003 | MS.gene09295 | 0.800104 | 1.69E-48 | -1.69E-46 |
| MS.gene051902 | MS.gene09295 | 0.811945 | 5.43E-51 | -1.69E-46 |
| MS.gene051903 | MS.gene09295 | 0.801762 | 7.72E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene09295 | 0.801097 | 1.06E-48 | -1.69E-46 |
| MS.gene052818 | MS.gene09295 | -0.821574 | 3.76E-53 | -1.69E-46 |
| MS.gene053298 | MS.gene09295 | 0.824406 | 8.21E-54 | -1.69E-46 |
| MS.gene053786 | MS.gene09295 | 0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene09295 | 0.843059 | 1.77E-58 | -1.69E-46 |
| MS.gene056605 | MS.gene09295 | 0.834201 | 3.44E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene09295 | 0.82651 | 2.61E-54 | -1.69E-46 |
| MS.gene057094 | MS.gene09295 | 0.803133 | 4.03E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene09295 | 0.814095 | 1.83E-51 | -1.69E-46 |
| MS.gene057890 | MS.gene09295 | -0.806754 | 7.05E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene09295 | 0.843395 | 1.44E-58 | -1.69E-46 |
| MS.gene058074 | MS.gene09295 | 0.822653 | 2.11E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene09295 | 0.807157 | 5.80E-50 | -1.69E-46 |
| MS.gene06011 | MS.gene09295 | 0.834413 | 3.04E-56 | -1.69E-46 |
| MS.gene060763 | MS.gene09295 | 0.848065 | 7.77E-60 | -1.69E-46 |
| MS.gene060830 | MS.gene09295 | 0.805312 | 1.42E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09295.t1 | MTR_8g085350 | 95.470 | 287 | 13 | 0 | 1 | 287 | 29 | 315 | 0.0 | 551 |
| MS.gene09295.t1 | MTR_8g085350 | 95.021 | 241 | 12 | 0 | 47 | 287 | 1 | 241 | 2.94e-167 | 465 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09295.t1 | AT2G32760 | 57.143 | 287 | 119 | 1 | 1 | 287 | 31 | 313 | 5.93e-107 | 315 |
| MS.gene09295.t1 | AT2G32760 | 55.602 | 241 | 103 | 1 | 47 | 287 | 1 | 237 | 2.27e-88 | 265 |
| MS.gene09295.t1 | AT2G32760 | 55.602 | 241 | 103 | 1 | 47 | 287 | 1 | 237 | 2.27e-88 | 265 |
Find 52 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGGATCTTTGACGATTC+AGG | 0.228077 | 4.1:+14241306 | MS.gene09295:CDS |
| GAGCTTGAAGCATATCCTTT+AGG | 0.322768 | 4.1:+14241012 | MS.gene09295:CDS |
| GTCAAAGATCCCTGATTAAC+TGG | 0.323069 | 4.1:-14241298 | None:intergenic |
| CGAACATAAACCAGTTAATC+AGG | 0.328631 | 4.1:+14241288 | MS.gene09295:CDS |
| CTGATTAACTGGTTTATGTT+CGG | 0.346972 | 4.1:-14241287 | None:intergenic |
| AGAATATGTCTATACGTTCT+AGG | 0.347316 | 4.1:+14238840 | MS.gene09295:CDS |
| TGGTGCTTTGCAGTCACTTT+TGG | 0.354409 | 4.1:+14238904 | MS.gene09295:CDS |
| AGATTACTGTCTGAAGAAAA+TGG | 0.354501 | 4.1:+14240874 | MS.gene09295:CDS |
| GAAAATTGCAAAAGATTCTA+AGG | 0.354960 | 4.1:+14240911 | MS.gene09295:CDS |
| AAGGTTTCGTTTCTTCTCCT+TGG | 0.365059 | 4.1:-14238568 | None:intergenic |
| TTTGTCTGTGAGCAGTTTAA+TGG | 0.374286 | 4.1:+14238746 | MS.gene09295:intron |
| TGATTAACTGGTTTATGTTC+GGG | 0.378393 | 4.1:-14241286 | None:intergenic |
| CAGAAATCTGCTACAGCCTT+AGG | 0.383257 | 4.1:+14241391 | MS.gene09295:CDS |
| GCAGTTTAATGGTGAATCAT+TGG | 0.389497 | 4.1:+14238757 | MS.gene09295:intron |
| TGTAACTAGCAGAAACCTTC+AGG | 0.394811 | 4.1:+14238946 | MS.gene09295:CDS |
| TCAAGCTCTTGCTCTTGTGC+TGG | 0.402870 | 4.1:-14240997 | None:intergenic |
| TTCGTTTCTTCTCCTTGGCT+TGG | 0.413812 | 4.1:-14238563 | None:intergenic |
| AAGCTGCTCTTGTTGTGTCT+TGG | 0.428578 | 4.1:-14241906 | None:intergenic |
| CAGGGATCTTTGACGATTCA+GGG | 0.428687 | 4.1:+14241307 | MS.gene09295:CDS |
| CAGTTTAATGGTGAATCATT+GGG | 0.476087 | 4.1:+14238758 | MS.gene09295:intron |
| TAAGGAGGATGCTGGTAAGC+AGG | 0.488908 | 4.1:+14238868 | MS.gene09295:CDS |
| TACCTTGCTTAGTAAGAATA+CGG | 0.490664 | 4.1:-14241932 | None:intergenic |
| GAGACTCGAGTTTGTGCTGA+AGG | 0.493087 | 4.1:-14238587 | None:intergenic |
| CTACGCTATCCCGTACGGTT+GGG | 0.495309 | 4.1:+14241760 | MS.gene09295:CDS |
| TGCCGTATTCTTACTAAGCA+AGG | 0.505027 | 4.1:+14241930 | MS.gene09295:CDS |
| TAGAGGAACTTGCAAGTATG+AGG | 0.508832 | 4.1:-14241740 | None:intergenic |
| GGAATCAAAGAAATTGATCA+TGG | 0.514210 | 4.1:+14238817 | MS.gene09295:CDS |
| TTCCTCTACGCTATCCCGTA+CGG | 0.519170 | 4.1:+14241755 | MS.gene09295:CDS |
| AAGCAGGAGGAGCAACTTAG+TGG | 0.523359 | 4.1:+14238884 | MS.gene09295:CDS |
| TGCAAAAGATTCTAAGGATG+AGG | 0.525190 | 4.1:+14240917 | MS.gene09295:CDS |
| TCTACGCTATCCCGTACGGT+TGG | 0.525579 | 4.1:+14241759 | MS.gene09295:CDS |
| AAGGATGAGGCAACAATACA+TGG | 0.532227 | 4.1:+14240930 | MS.gene09295:CDS |
| ATATGCTTGGCATTTGTGAA+AGG | 0.535167 | 4.1:-14241859 | None:intergenic |
| TATCCTTTAGGTAGTTCAGC+AGG | 0.536534 | 4.1:+14241024 | MS.gene09295:CDS |
| CAAACTCGAGTCTCTCATCC+AGG | 0.545300 | 4.1:+14238596 | MS.gene09295:CDS |
| TATACGTTCTAGGCTGGCTA+AGG | 0.546829 | 4.1:+14238850 | MS.gene09295:CDS |
| GTCAATAATATATGAATGAG+AGG | 0.554475 | 4.1:-14241785 | None:intergenic |
| ACGTTCTAGGCTGGCTAAGG+AGG | 0.558899 | 4.1:+14238853 | MS.gene09295:CDS |
| TATGTCTATACGTTCTAGGC+TGG | 0.561598 | 4.1:+14238844 | MS.gene09295:CDS |
| ATGAGAGGCACCCAACCGTA+CGG | 0.571866 | 4.1:-14241770 | None:intergenic |
| TGAGAGGCACCCAACCGTAC+GGG | 0.574841 | 4.1:-14241769 | None:intergenic |
| TTACCTGCTGAACTACCTAA+AGG | 0.575586 | 4.1:-14241027 | None:intergenic |
| TACATGTGCAACATATCCTA+AGG | 0.579587 | 4.1:-14241407 | None:intergenic |
| TTCTGCTCTTAACCAAGCCA+AGG | 0.604417 | 4.1:+14238551 | MS.gene09295:CDS |
| GATAGAGCTAACTTCTTCTG+AGG | 0.606180 | 4.1:+14241819 | MS.gene09295:CDS |
| GAACATAAACCAGTTAATCA+GGG | 0.606763 | 4.1:+14241289 | MS.gene09295:CDS |
| AGAAGAAGTTAGCTCTATCG+AGG | 0.617283 | 4.1:-14241815 | None:intergenic |
| TTAACTGGTTTATGTTCGGG+AGG | 0.640495 | 4.1:-14241283 | None:intergenic |
| GGAGGATGCTGGTAAGCAGG+AGG | 0.648190 | 4.1:+14238871 | MS.gene09295:CDS |
| AGGCTGGCTAAGGAGGATGC+TGG | 0.655911 | 4.1:+14238860 | MS.gene09295:CDS |
| AACCGTACGGGATAGCGTAG+AGG | 0.681236 | 4.1:-14241757 | None:intergenic |
| GAAGAAGTTAGCTCTATCGA+GGG | 0.683985 | 4.1:-14241814 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTAAATTTTAAAAAT+CGG | + | chr4.1:14239162-14239181 | MS.gene09295:intron | 0.0% |
| !! | TAACTAAAATAAACTATTTA+GGG | + | chr4.1:14238659-14238678 | MS.gene09295:intron | 10.0% |
| !! | TTAACTAAAATAAACTATTT+AGG | + | chr4.1:14238658-14238677 | MS.gene09295:intron | 10.0% |
| !! | AAAAAAAAAAAAAACTCTCA+AGG | + | chr4.1:14240582-14240601 | MS.gene09295:intron | 15.0% |
| !! | AAAAAAAAAAAAACTCTCAA+GGG | + | chr4.1:14240583-14240602 | MS.gene09295:intron | 15.0% |
| !! | TGTAAAAAATATGAACTTAT+TGG | - | chr4.1:14240495-14240514 | None:intergenic | 15.0% |
| !!! | AATTAAATTTTAAAAATCGG+CGG | + | chr4.1:14239165-14239184 | MS.gene09295:intron | 15.0% |
| !! | AATAAAACCAGTGAATATTA+TGG | - | chr4.1:14240613-14240632 | None:intergenic | 20.0% |
| !! | ACTATAAACATAGATAATCT+TGG | - | chr4.1:14239331-14239350 | None:intergenic | 20.0% |
| !! | ACTATACAAATGAAATAGAA+AGG | - | chr4.1:14239514-14239533 | None:intergenic | 20.0% |
| !! | AGCATATTTCAACAATTATT+AGG | - | chr4.1:14241677-14241696 | None:intergenic | 20.0% |
| !! | CATATAAAAGAAGAAATTTG+AGG | + | chr4.1:14241116-14241135 | MS.gene09295:intron | 20.0% |
| !! | TAGTTATAGTATGAGATTTA+AGG | - | chr4.1:14240531-14240550 | None:intergenic | 20.0% |
| !! | TTATATACAGAAAACTTGAT+TGG | + | chr4.1:14241569-14241588 | MS.gene09295:intron | 20.0% |
| !! | TTCTATTTCATTTGTATAGT+TGG | + | chr4.1:14239514-14239533 | MS.gene09295:intron | 20.0% |
| !! | TTGTTAGTTAAATCCATATT+AGG | + | chr4.1:14239908-14239927 | MS.gene09295:intron | 20.0% |
| !!! | AGAATTAGGTTTTTCATATA+GGG | + | chr4.1:14238635-14238654 | MS.gene09295:intron | 20.0% |
| !!! | ATAATATTCACTGGTTTTAT+TGG | + | chr4.1:14240612-14240631 | MS.gene09295:intron | 20.0% |
| !!! | ATGTTTTTATTTAGACTGAA+TGG | + | chr4.1:14239950-14239969 | MS.gene09295:intron | 20.0% |
| !!! | ATTAAATTTTAAAAATCGGC+GGG | + | chr4.1:14239166-14239185 | MS.gene09295:intron | 20.0% |
| !!! | GTTTTCTTGTGATAATATTA+TGG | - | chr4.1:14240402-14240421 | None:intergenic | 20.0% |
| !!! | TAATATTCACTGGTTTTATT+GGG | + | chr4.1:14240613-14240632 | MS.gene09295:intron | 20.0% |
| !!! | TGGAAAATTACTTTCTTTTT+AGG | + | chr4.1:14239839-14239858 | MS.gene09295:intron | 20.0% |
| !!! | TTTTTTTTTTTCTTTCATCC+CGG | + | chr4.1:14239107-14239126 | MS.gene09295:intron | 20.0% |
| ! | AACACACATACTATAAAGTA+TGG | - | chr4.1:14240152-14240171 | None:intergenic | 25.0% |
| ! | AATAGGCATTTAAACTGTTT+AGG | + | chr4.1:14239558-14239577 | MS.gene09295:intron | 25.0% |
| ! | AATATCTGAAAAGAGAACAA+AGG | - | chr4.1:14241599-14241618 | None:intergenic | 25.0% |
| ! | ACTCAAAATGTCAACTAAAA+TGG | - | chr4.1:14239252-14239271 | None:intergenic | 25.0% |
| ! | AGATTTGGAAATTAATGAGT+TGG | + | chr4.1:14239726-14239745 | MS.gene09295:intron | 25.0% |
| ! | AGCAATAAATTTCTCAAAGA+AGG | - | chr4.1:14240076-14240095 | None:intergenic | 25.0% |
| ! | AGCGTATAAGGAATTATAAA+CGG | + | chr4.1:14239286-14239305 | MS.gene09295:intron | 25.0% |
| ! | AGCTTTCAAACTACAATAAT+AGG | - | chr4.1:14240826-14240845 | None:intergenic | 25.0% |
| ! | ATGATGATATTTATTCTGTG+TGG | + | chr4.1:14241061-14241080 | MS.gene09295:intron | 25.0% |
| ! | GAAAATTGCAAAAGATTCTA+AGG | + | chr4.1:14240911-14240930 | MS.gene09295:CDS | 25.0% |
| ! | GATGTAACTATTATGTTCTT+TGG | + | chr4.1:14240452-14240471 | MS.gene09295:intron | 25.0% |
| ! | GATTTGGAAATTAATGAGTT+GGG | + | chr4.1:14239727-14239746 | MS.gene09295:intron | 25.0% |
| ! | GTCAATAATATATGAATGAG+AGG | - | chr4.1:14241788-14241807 | None:intergenic | 25.0% |
| ! | TAGTTAAATCCATATTAGGT+GGG | + | chr4.1:14239912-14239931 | MS.gene09295:intron | 25.0% |
| ! | TGCAAATACAAAAAGTTGTA+CGG | - | chr4.1:14240684-14240703 | None:intergenic | 25.0% |
| ! | TGGAAAAAAGTTATTGGAAA+AGG | - | chr4.1:14239998-14240017 | None:intergenic | 25.0% |
| ! | TGGTTGACATTATGAATAAT+AGG | + | chr4.1:14239541-14239560 | MS.gene09295:intron | 25.0% |
| ! | TGTTGCATATATTAATAGCT+TGG | + | chr4.1:14240430-14240449 | MS.gene09295:intron | 25.0% |
| ! | TTAGTTAAATCCATATTAGG+TGG | + | chr4.1:14239911-14239930 | MS.gene09295:intron | 25.0% |
| ! | TTATACCATACACCATATTT+CGG | - | chr4.1:14239753-14239772 | None:intergenic | 25.0% |
| !! | AAATCGTATCACATGATTTT+TGG | - | chr4.1:14241518-14241537 | None:intergenic | 25.0% |
| !! | AAATTTTGTATTCTCAACTG+TGG | + | chr4.1:14241619-14241638 | MS.gene09295:intron | 25.0% |
| !! | AACTCATGTGTTTTCATAAT+TGG | - | chr4.1:14239060-14239079 | None:intergenic | 25.0% |
| !! | ACCTATAAATTTTGTAGCAA+GGG | + | chr4.1:14239641-14239660 | MS.gene09295:intron | 25.0% |
| !! | ATATGAACTTATTGGTTACA+AGG | - | chr4.1:14240487-14240506 | None:intergenic | 25.0% |
| !! | CAGAATTAGGTTTTTCATAT+AGG | + | chr4.1:14238634-14238653 | MS.gene09295:intron | 25.0% |
| !! | CTGGGTAATTTTTAAACATA+AGG | - | chr4.1:14239598-14239617 | None:intergenic | 25.0% |
| !! | GGTTTTCTATTCCTTAAATT+GGG | + | chr4.1:14241167-14241186 | MS.gene09295:intron | 25.0% |
| !! | TAGTTTGCAATTTCCTAAAT+CGG | + | chr4.1:14239347-14239366 | MS.gene09295:intron | 25.0% |
| !! | TGGTTTTCTATTCCTTAAAT+TGG | + | chr4.1:14241166-14241185 | MS.gene09295:intron | 25.0% |
| !!! | AAACTATTTAGGGTTTTAGT+TGG | + | chr4.1:14238669-14238688 | MS.gene09295:intron | 25.0% |
| !!! | GAGTTTTTTCACAGATAAAA+AGG | + | chr4.1:14241363-14241382 | MS.gene09295:CDS | 25.0% |
| !!! | TCGTGTGATGTTTTATTTTT+GGG | + | chr4.1:14239138-14239157 | MS.gene09295:intron | 25.0% |
| !!! | TTTTAGTTGACATTTTGAGT+AGG | + | chr4.1:14239252-14239271 | MS.gene09295:intron | 25.0% |
| !!! | TTTTTTTTTTCTTTCATCCC+GGG | + | chr4.1:14239108-14239127 | MS.gene09295:intron | 25.0% |
| AAATCACCTAGAAAAACTAC+CGG | + | chr4.1:14239688-14239707 | MS.gene09295:intron | 30.0% | |
| AATTTGTAGACATCCGATTT+AGG | - | chr4.1:14239363-14239382 | None:intergenic | 30.0% | |
| ACTGTTTAGGTGTTTCTTAA+AGG | + | chr4.1:14239571-14239590 | MS.gene09295:intron | 30.0% | |
| AGAATATGTCTATACGTTCT+AGG | + | chr4.1:14238840-14238859 | MS.gene09295:CDS | 30.0% | |
| AGAGACTATTAGGAAAGATT+TGG | + | chr4.1:14239711-14239730 | MS.gene09295:intron | 30.0% | |
| AGATTACTGTCTGAAGAAAA+TGG | + | chr4.1:14240874-14240893 | MS.gene09295:CDS | 30.0% | |
| ATAACTACTCTCAATTCTCA+GGG | + | chr4.1:14240544-14240563 | MS.gene09295:intron | 30.0% | |
| CAAATAACACAGATGTGAAA+TGG | - | chr4.1:14240201-14240220 | None:intergenic | 30.0% | |
| CACATACTATAAAGTATGGA+TGG | - | chr4.1:14240148-14240167 | None:intergenic | 30.0% | |
| CAGTTTAATGGTGAATCATT+GGG | + | chr4.1:14238758-14238777 | MS.gene09295:intron | 30.0% | |
| CCATCAATATAGAAAAGTCT+GGG | - | chr4.1:14239616-14239635 | None:intergenic | 30.0% | |
| CTAAGAAAGGAAAGACAAAA+TGG | - | chr4.1:14239197-14239216 | None:intergenic | 30.0% | |
| GAACATAAACCAGTTAATCA+GGG | + | chr4.1:14241289-14241308 | MS.gene09295:CDS | 30.0% | |
| GAGACATGGAAAAAAGTTAT+TGG | - | chr4.1:14240004-14240023 | None:intergenic | 30.0% | |
| GATATATAGACAAGCGTATA+AGG | + | chr4.1:14239274-14239293 | MS.gene09295:intron | 30.0% | |
| GCATAAAGATATAAGATCTG+AGG | - | chr4.1:14241461-14241480 | None:intergenic | 30.0% | |
| GGAATCAAAGAAATTGATCA+TGG | + | chr4.1:14238817-14238836 | MS.gene09295:CDS | 30.0% | |
| TAAACGGTTGTAGATGTAAA+CGG | + | chr4.1:14239302-14239321 | MS.gene09295:intron | 30.0% | |
| TATAACTACTCTCAATTCTC+AGG | + | chr4.1:14240543-14240562 | MS.gene09295:intron | 30.0% | |
| TGGTGTATGGTATAACATTA+TGG | + | chr4.1:14239758-14239777 | MS.gene09295:intron | 30.0% | |
| TGTGAGTTACAAACTGTAAA+AGG | + | chr4.1:14240647-14240666 | MS.gene09295:intron | 30.0% | |
| ! | ACAACTTTTTGTATTTGCAG+TGG | + | chr4.1:14240685-14240704 | MS.gene09295:intron | 30.0% |
| ! | ACATGTAACTAGGAAGTTTT+AGG | + | chr4.1:14240240-14240259 | MS.gene09295:intron | 30.0% |
| ! | ATCATACTGATAGCACTTTT+GGG | + | chr4.1:14240757-14240776 | MS.gene09295:intron | 30.0% |
| ! | ATGTGTTTTCATAATTGGTG+TGG | - | chr4.1:14239055-14239074 | None:intergenic | 30.0% |
| ! | CCAGACTTTTCTATATTGAT+GGG | + | chr4.1:14239614-14239633 | MS.gene09295:intron | 30.0% |
| ! | CCTATAAATTTTGTAGCAAG+GGG | + | chr4.1:14239642-14239661 | MS.gene09295:intron | 30.0% |
| ! | CTGATTAACTGGTTTATGTT+CGG | - | chr4.1:14241290-14241309 | None:intergenic | 30.0% |
| ! | GACCTATAAATTTTGTAGCA+AGG | + | chr4.1:14239640-14239659 | MS.gene09295:intron | 30.0% |
| ! | TATAAGATCTGAGGTAAAGA+AGG | - | chr4.1:14241452-14241471 | None:intergenic | 30.0% |
| ! | TATCATACTGATAGCACTTT+TGG | + | chr4.1:14240756-14240775 | MS.gene09295:intron | 30.0% |
| ! | TCATTTGTATAGTTGGTACT+TGG | + | chr4.1:14239521-14239540 | MS.gene09295:intron | 30.0% |
| ! | TGATTAACTGGTTTATGTTC+GGG | - | chr4.1:14241289-14241308 | None:intergenic | 30.0% |
| !! | TTTCACATCTGTGTTATTTG+AGG | + | chr4.1:14240201-14240220 | MS.gene09295:intron | 30.0% |
| !!! | CCAAATAAGATTTTGAGGTT+GGG | + | chr4.1:14240284-14240303 | MS.gene09295:intron | 30.0% |
| !!! | GTCGTGTGATGTTTTATTTT+TGG | + | chr4.1:14239137-14239156 | MS.gene09295:intron | 30.0% |
| !!! | TCCAAATAAGATTTTGAGGT+TGG | + | chr4.1:14240283-14240302 | MS.gene09295:intron | 30.0% |
| AAACGGTTGTAGATGTAAAC+GGG | + | chr4.1:14239303-14239322 | MS.gene09295:intron | 35.0% | |
| AATAGAAAACCAAGAGAGAG+TGG | - | chr4.1:14241158-14241177 | None:intergenic | 35.0% | |
| ATAACCATCCGAATTTGTGT+TGG | - | chr4.1:14239486-14239505 | None:intergenic | 35.0% | |
| ATAACTCTCGTTGCTAAGAA+AGG | - | chr4.1:14239210-14239229 | None:intergenic | 35.0% | |
| ATAAGATTTGTGTGTGTAGG+AGG | - | chr4.1:14240028-14240047 | None:intergenic | 35.0% | |
| ATATGCTTGGCATTTGTGAA+AGG | - | chr4.1:14241862-14241881 | None:intergenic | 35.0% | |
| ATCTTTCCTAATAGTCTCTC+CGG | - | chr4.1:14239710-14239729 | None:intergenic | 35.0% | |
| ATGGCTTCATCCTTATGAAA+AGG | - | chr4.1:14240383-14240402 | None:intergenic | 35.0% | |
| CCCAACCTCAAAATCTTATT+TGG | - | chr4.1:14240287-14240306 | None:intergenic | 35.0% | |
| CCCATCAATATAGAAAAGTC+TGG | - | chr4.1:14239617-14239636 | None:intergenic | 35.0% | |
| CCCCTTGCTACAAAATTTAT+AGG | - | chr4.1:14239645-14239664 | None:intergenic | 35.0% | |
| CGAACATAAACCAGTTAATC+AGG | + | chr4.1:14241288-14241307 | MS.gene09295:CDS | 35.0% | |
| CTCAGTCATGTCTTACTTTA+GGG | - | chr4.1:14241094-14241113 | None:intergenic | 35.0% | |
| CTTCATCCTTATGAAAAGGA+AGG | - | chr4.1:14240379-14240398 | None:intergenic | 35.0% | |
| GCAGTTTAATGGTGAATCAT+TGG | + | chr4.1:14238757-14238776 | MS.gene09295:intron | 35.0% | |
| GGTTCAACCAAAAACTTTAC+AGG | - | chr4.1:14240979-14240998 | None:intergenic | 35.0% | |
| TAACTACTCTCAATTCTCAG+GGG | + | chr4.1:14240545-14240564 | MS.gene09295:intron | 35.0% | |
| TAAGATTTGTGTGTGTAGGA+GGG | - | chr4.1:14240027-14240046 | None:intergenic | 35.0% | |
| TAATAGTGTTCATTCACTGC+TGG | + | chr4.1:14240104-14240123 | MS.gene09295:intron | 35.0% | |
| TACATGTGCAACATATCCTA+AGG | - | chr4.1:14241410-14241429 | None:intergenic | 35.0% | |
| TAGACTTTCTTCTTCTTCTC+AGG | + | chr4.1:14241702-14241721 | MS.gene09295:intron | 35.0% | |
| TATACCATAAACTGACCTGA+AGG | - | chr4.1:14238964-14238983 | None:intergenic | 35.0% | |
| TCAGTCATGTCTTACTTTAG+GGG | - | chr4.1:14241093-14241112 | None:intergenic | 35.0% | |
| TCCATAAGATTTGTGTGTGT+AGG | - | chr4.1:14240031-14240050 | None:intergenic | 35.0% | |
| TCCTACACACACAAATCTTA+TGG | + | chr4.1:14240027-14240046 | MS.gene09295:intron | 35.0% | |
| TGAAGAGATGCGTCAAAAAT+TGG | + | chr4.1:14238796-14238815 | MS.gene09295:CDS | 35.0% | |
| TTTGTCTGTGAGCAGTTTAA+TGG | + | chr4.1:14238746-14238765 | MS.gene09295:intron | 35.0% | |
| ! | AGAAATTTGAGGTGCTAAGA+TGG | + | chr4.1:14241127-14241146 | MS.gene09295:intron | 35.0% |
| ! | AGTTTTTGTATGGCTCATGT+GGG | + | chr4.1:14241643-14241662 | MS.gene09295:intron | 35.0% |
| ! | CAACTGTGGTAGTTTTTGTA+TGG | + | chr4.1:14241633-14241652 | MS.gene09295:intron | 35.0% |
| ! | CCCAGACTTTTCTATATTGA+TGG | + | chr4.1:14239613-14239632 | MS.gene09295:intron | 35.0% |
| ! | GCTCTCCAAATAAGATTTTG+AGG | + | chr4.1:14240279-14240298 | MS.gene09295:intron | 35.0% |
| ! | GCTGATGATGCTGTTATTAT+AGG | + | chr4.1:14240843-14240862 | MS.gene09295:intron | 35.0% |
| ! | GCTGTATCCTGTAAAGTTTT+TGG | + | chr4.1:14240969-14240988 | MS.gene09295:CDS | 35.0% |
| ! | GTCTTGGCCTTCTAAAAATA+GGG | - | chr4.1:14241893-14241912 | None:intergenic | 35.0% |
| ! | TAGTTTTTGTATGGCTCATG+TGG | + | chr4.1:14241642-14241661 | MS.gene09295:intron | 35.0% |
| ! | TCATACTGATAGCACTTTTG+GGG | + | chr4.1:14240758-14240777 | MS.gene09295:intron | 35.0% |
| ! | TCTTGGCCTTCTAAAAATAG+GGG | - | chr4.1:14241892-14241911 | None:intergenic | 35.0% |
| ! | TGCAAAAGATTCTAAGGATG+AGG | + | chr4.1:14240917-14240936 | MS.gene09295:CDS | 35.0% |
| ! | TGTCTTGGCCTTCTAAAAAT+AGG | - | chr4.1:14241894-14241913 | None:intergenic | 35.0% |
| !! | GGGTTTTAGCAATCAGAATT+AGG | + | chr4.1:14238621-14238640 | MS.gene09295:intron | 35.0% |
| !!! | GAATTCCCCCTATTTTTAGA+AGG | + | chr4.1:14241883-14241902 | MS.gene09295:CDS | 35.0% |
| !!! | GTATCACATGATTTTTGGTG+TGG | - | chr4.1:14241513-14241532 | None:intergenic | 35.0% |
| !!! | TGTAACTAGGAAGTTTTAGG+AGG | + | chr4.1:14240243-14240262 | MS.gene09295:intron | 35.0% |
| AAACTACCGGAGAGACTATT+AGG | + | chr4.1:14239701-14239720 | MS.gene09295:intron | 40.0% | |
| AAGATTTGTGTGTGTAGGAG+GGG | - | chr4.1:14240026-14240045 | None:intergenic | 40.0% | |
| AAGGATGAGGCAACAATACA+TGG | + | chr4.1:14240930-14240949 | MS.gene09295:CDS | 40.0% | |
| AAGGTTTCGTTTCTTCTCCT+TGG | - | chr4.1:14238571-14238590 | None:intergenic | 40.0% | |
| AATACGCGGGCTCATTAATT+AGG | - | chr4.1:14238713-14238732 | None:intergenic | 40.0% | |
| AGGGTCATTGACATGTAACT+AGG | + | chr4.1:14240230-14240249 | MS.gene09295:intron | 40.0% | |
| ATACGCGGGCTCATTAATTA+GGG | - | chr4.1:14238712-14238731 | None:intergenic | 40.0% | |
| ATCTCATAGCCCACCTAATA+TGG | - | chr4.1:14239924-14239943 | None:intergenic | 40.0% | |
| CAAGTCAGCCAACACAAATT+CGG | + | chr4.1:14239475-14239494 | MS.gene09295:intron | 40.0% | |
| CATCCTTATGAAAAGGAAGG+AGG | - | chr4.1:14240376-14240395 | None:intergenic | 40.0% | |
| CATGCAAGAAAGAGAACAAC+AGG | - | chr4.1:14239869-14239888 | None:intergenic | 40.0% | |
| CTTTGTGAATGTGAGGCTTT+GGG | + | chr4.1:14240327-14240346 | MS.gene09295:intron | 40.0% | |
| GAAACCTTCAGGTCAGTTTA+TGG | + | chr4.1:14238957-14238976 | MS.gene09295:intron | 40.0% | |
| GAACACAACAGCCCAATTTA+AGG | - | chr4.1:14241181-14241200 | None:intergenic | 40.0% | |
| GAGCTTGAAGCATATCCTTT+AGG | + | chr4.1:14241012-14241031 | MS.gene09295:CDS | 40.0% | |
| GATAGAGCTAACTTCTTCTG+AGG | + | chr4.1:14241819-14241838 | MS.gene09295:CDS | 40.0% | |
| GCTCAGTCATGTCTTACTTT+AGG | - | chr4.1:14241095-14241114 | None:intergenic | 40.0% | |
| GGGAAGTCCATAATATTCAC+TGG | + | chr4.1:14240603-14240622 | MS.gene09295:intron | 40.0% | |
| GTCAAAGATCCCTGATTAAC+TGG | - | chr4.1:14241301-14241320 | None:intergenic | 40.0% | |
| TAGAGGAACTTGCAAGTATG+AGG | - | chr4.1:14241743-14241762 | None:intergenic | 40.0% | |
| TAGGGGGAATTCTATATGCT+TGG | - | chr4.1:14241875-14241894 | None:intergenic | 40.0% | |
| TATCCTTTAGGTAGTTCAGC+AGG | + | chr4.1:14241024-14241043 | MS.gene09295:CDS | 40.0% | |
| TGTAACTAGCAGAAACCTTC+AGG | + | chr4.1:14238946-14238965 | MS.gene09295:CDS | 40.0% | |
| TTACCTGCTGAACTACCTAA+AGG | - | chr4.1:14241030-14241049 | None:intergenic | 40.0% | |
| TTAGGTAGTTCAGCAGGTAA+TGG | + | chr4.1:14241030-14241049 | MS.gene09295:intron | 40.0% | |
| TTATGAAAAGGAAGGAGGAC+AGG | - | chr4.1:14240371-14240390 | None:intergenic | 40.0% | |
| TTGTGTTTATATCCTTGCCC+AGG | + | chr4.1:14241256-14241275 | MS.gene09295:intron | 40.0% | |
| ! | AAAGGCTTGGTTGTTGTTGA+TGG | + | chr4.1:14239819-14239838 | MS.gene09295:intron | 40.0% |
| ! | ATCTGAGGTAAAGAAGGCAA+GGG | - | chr4.1:14241446-14241465 | None:intergenic | 40.0% |
| ! | CTTGGCCTTCTAAAAATAGG+GGG | - | chr4.1:14241891-14241910 | None:intergenic | 40.0% |
| ! | TAATGAGTTGGGCCGAAATA+TGG | + | chr4.1:14239738-14239757 | MS.gene09295:intron | 40.0% |
| ! | TATGTCTATACGTTCTAGGC+TGG | + | chr4.1:14238844-14238863 | MS.gene09295:CDS | 40.0% |
| ! | TGTCCTCCTTCCTTTTCATA+AGG | + | chr4.1:14240370-14240389 | MS.gene09295:intron | 40.0% |
| ! | TTAACTGGTTTATGTTCGGG+AGG | - | chr4.1:14241286-14241305 | None:intergenic | 40.0% |
| ! | TTTAGGAGGTGTGCTAATGA+TGG | + | chr4.1:14240257-14240276 | MS.gene09295:intron | 40.0% |
| ! | TTTTTGTATTTGCAGTGGCG+AGG | + | chr4.1:14240690-14240709 | MS.gene09295:intron | 40.0% |
| !! | AGAAGAAGTTAGCTCTATCG+AGG | - | chr4.1:14241818-14241837 | None:intergenic | 40.0% |
| !! | GAAGAAGTTAGCTCTATCGA+GGG | - | chr4.1:14241817-14241836 | None:intergenic | 40.0% |
| !! | GTGTTATTTGAGGTCAGAGA+GGG | + | chr4.1:14240211-14240230 | MS.gene09295:intron | 40.0% |
| !! | TAGGTGGGCTATGAGATAAT+CGG | + | chr4.1:14239927-14239946 | MS.gene09295:intron | 40.0% |
| !! | TGTGTTATTTGAGGTCAGAG+AGG | + | chr4.1:14240210-14240229 | MS.gene09295:intron | 40.0% |
| ACATCACACGACACTAAACC+CGG | - | chr4.1:14239129-14239148 | None:intergenic | 45.0% | |
| CAACATGTCTGCAGTAGTCA+AGG | - | chr4.1:14240724-14240743 | None:intergenic | 45.0% | |
| CAGAAATCTGCTACAGCCTT+AGG | + | chr4.1:14241391-14241410 | MS.gene09295:CDS | 45.0% | |
| CAGGGATCTTTGACGATTCA+GGG | + | chr4.1:14241307-14241326 | MS.gene09295:CDS | 45.0% | |
| CCAAAGCCTCACATTCACAA+AGG | - | chr4.1:14240329-14240348 | None:intergenic | 45.0% | |
| CCTTTGTGAATGTGAGGCTT+TGG | + | chr4.1:14240326-14240345 | MS.gene09295:intron | 45.0% | |
| CTGATTGCTAAAACCCTACC+TGG | - | chr4.1:14238617-14238636 | None:intergenic | 45.0% | |
| TCAGCCAACACAAATTCGGA+TGG | + | chr4.1:14239479-14239498 | MS.gene09295:intron | 45.0% | |
| TCAGGGATCTTTGACGATTC+AGG | + | chr4.1:14241306-14241325 | MS.gene09295:CDS | 45.0% | |
| TTAATGAGCCCGCGTATTAG+CGG | + | chr4.1:14238715-14238734 | MS.gene09295:intron | 45.0% | |
| TTCGTTTCTTCTCCTTGGCT+TGG | - | chr4.1:14238566-14238585 | None:intergenic | 45.0% | |
| TTCTGCTCTTAACCAAGCCA+AGG | + | chr4.1:14238551-14238570 | MS.gene09295:CDS | 45.0% | |
| TTGGGCCGAAATATGGTGTA+TGG | + | chr4.1:14239745-14239764 | MS.gene09295:intron | 45.0% | |
| ! | AAGCCTTTTCCCACTAAGTG+GGG | - | chr4.1:14239807-14239826 | None:intergenic | 45.0% |
| ! | AAGCTGCTCTTGTTGTGTCT+TGG | - | chr4.1:14241909-14241928 | None:intergenic | 45.0% |
| ! | CAAGCCTTTTCCCACTAAGT+GGG | - | chr4.1:14239808-14239827 | None:intergenic | 45.0% |
| ! | GATCTGAGGTAAAGAAGGCA+AGG | - | chr4.1:14241447-14241466 | None:intergenic | 45.0% |
| ! | GTCTCTCCGGTAGTTTTTCT+AGG | - | chr4.1:14239697-14239716 | None:intergenic | 45.0% |
| ! | TATACGTTCTAGGCTGGCTA+AGG | + | chr4.1:14238850-14238869 | MS.gene09295:CDS | 45.0% |
| !! | TGGTGCTTTGCAGTCACTTT+TGG | + | chr4.1:14238904-14238923 | MS.gene09295:CDS | 45.0% |
| !!! | TGCTTTGCAGTCACTTTTGG+TGG | + | chr4.1:14238907-14238926 | MS.gene09295:CDS | 45.0% |
| !!! | TTTGCAGTCACTTTTGGTGG+CGG | + | chr4.1:14238910-14238929 | MS.gene09295:CDS | 45.0% |
| AAGCAGGAGGAGCAACTTAG+TGG | + | chr4.1:14238884-14238903 | MS.gene09295:CDS | 50.0% | |
| AAGGGGAGTAGATCAGATGG+AGG | + | chr4.1:14239659-14239678 | MS.gene09295:intron | 50.0% | |
| AATCATCGCCCGCTAATACG+CGG | - | chr4.1:14238727-14238746 | None:intergenic | 50.0% | |
| ACTAAGTGGGGTCAGCTACA+TGG | - | chr4.1:14239795-14239814 | None:intergenic | 50.0% | |
| AGCAAGGGGAGTAGATCAGA+TGG | + | chr4.1:14239656-14239675 | MS.gene09295:intron | 50.0% | |
| ATGTAGCTGACCCCACTTAG+TGG | + | chr4.1:14239794-14239813 | MS.gene09295:intron | 50.0% | |
| CAAACTCGAGTCTCTCATCC+AGG | + | chr4.1:14238596-14238615 | MS.gene09295:CDS | 50.0% | |
| CATCACACGACACTAAACCC+GGG | - | chr4.1:14239128-14239147 | None:intergenic | 50.0% | |
| CATGTCTGCAGTAGTCAAGG+AGG | - | chr4.1:14240721-14240740 | None:intergenic | 50.0% | |
| CCACTTAGTGGGAAAAGGCT+TGG | + | chr4.1:14239806-14239825 | MS.gene09295:intron | 50.0% | |
| CCTCACATTCACAAAGGCTG+AGG | - | chr4.1:14240323-14240342 | None:intergenic | 50.0% | |
| CCTCAGCCTTTGTGAATGTG+AGG | + | chr4.1:14240320-14240339 | MS.gene09295:intron | 50.0% | |
| CGGGCTCATTAATTAGGGAC+AGG | - | chr4.1:14238707-14238726 | None:intergenic | 50.0% | |
| GAGACTCGAGTTTGTGCTGA+AGG | - | chr4.1:14238590-14238609 | None:intergenic | 50.0% | |
| TAAGGAGGATGCTGGTAAGC+AGG | + | chr4.1:14238868-14238887 | MS.gene09295:CDS | 50.0% | |
| TAATGAGCCCGCGTATTAGC+GGG | + | chr4.1:14238716-14238735 | MS.gene09295:intron | 50.0% | |
| TCAAGCTCTTGCTCTTGTGC+TGG | - | chr4.1:14241000-14241019 | None:intergenic | 50.0% | |
| TCGAGTCTCTCATCCAGGTA+GGG | + | chr4.1:14238601-14238620 | MS.gene09295:intron | 50.0% | |
| TGACCCCACTTAGTGGGAAA+AGG | + | chr4.1:14239801-14239820 | MS.gene09295:intron | 50.0% | |
| TGAGGTAAAGAAGGCAAGGG+AGG | - | chr4.1:14241443-14241462 | None:intergenic | 50.0% | |
| TGTAGCTGACCCCACTTAGT+GGG | + | chr4.1:14239795-14239814 | MS.gene09295:intron | 50.0% | |
| TTCCTCTACGCTATCCCGTA+CGG | + | chr4.1:14241755-14241774 | MS.gene09295:CDS | 50.0% | |
| ! | ATGGTTCTGCCACTCTCTCT+TGG | + | chr4.1:14241146-14241165 | MS.gene09295:intron | 50.0% |
| ! | CCAAGCCTTTTCCCACTAAG+TGG | - | chr4.1:14239809-14239828 | None:intergenic | 50.0% |
| !!! | TTGCAGTCACTTTTGGTGGC+GGG | + | chr4.1:14238911-14238930 | MS.gene09295:CDS | 50.0% |
| AACCGTACGGGATAGCGTAG+AGG | - | chr4.1:14241760-14241779 | None:intergenic | 55.0% | |
| ATCATCGCCCGCTAATACGC+GGG | - | chr4.1:14238726-14238745 | None:intergenic | 55.0% | |
| CTACGCTATCCCGTACGGTT+GGG | + | chr4.1:14241760-14241779 | MS.gene09295:CDS | 55.0% | |
| CTCGAGTCTCTCATCCAGGT+AGG | + | chr4.1:14238600-14238619 | MS.gene09295:intron | 55.0% | |
| GTATGGCTCATGTGGGACTG+TGG | + | chr4.1:14241650-14241669 | MS.gene09295:intron | 55.0% | |
| TCTACGCTATCCCGTACGGT+TGG | + | chr4.1:14241759-14241778 | MS.gene09295:CDS | 55.0% | |
| TGTGTGTAGGAGGGGAGACA+TGG | - | chr4.1:14240018-14240037 | None:intergenic | 55.0% | |
| ! | ACGTTCTAGGCTGGCTAAGG+AGG | + | chr4.1:14238853-14238872 | MS.gene09295:CDS | 55.0% |
| !! | ATGAGAGGCACCCAACCGTA+CGG | - | chr4.1:14241773-14241792 | None:intergenic | 55.0% |
| !! | TATGTTCGGGAGGAGTGCCT+GGG | - | chr4.1:14241276-14241295 | None:intergenic | 55.0% |
| !! | TTATGTTCGGGAGGAGTGCC+TGG | - | chr4.1:14241277-14241296 | None:intergenic | 55.0% |
| GGAGGATGCTGGTAAGCAGG+AGG | + | chr4.1:14238871-14238890 | MS.gene09295:CDS | 60.0% | |
| ! | AGGCTGGCTAAGGAGGATGC+TGG | + | chr4.1:14238860-14238879 | MS.gene09295:CDS | 60.0% |
| !! | TGAGAGGCACCCAACCGTAC+GGG | - | chr4.1:14241772-14241791 | None:intergenic | 60.0% |
| !!! | CAGTCACTTTTGGTGGCGGG+TGG | + | chr4.1:14238914-14238933 | MS.gene09295:CDS | 60.0% |
| !! | TCGGGAGGAGTGCCTGGGCA+AGG | - | chr4.1:14241271-14241290 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 14238522 | 14241951 | 14238522 | ID=MS.gene09295 |
| chr4.1 | mRNA | 14238522 | 14241951 | 14238522 | ID=MS.gene09295.t1;Parent=MS.gene09295 |
| chr4.1 | exon | 14238522 | 14238617 | 14238522 | ID=MS.gene09295.t1.exon1;Parent=MS.gene09295.t1 |
| chr4.1 | CDS | 14238522 | 14238617 | 14238522 | ID=cds.MS.gene09295.t1;Parent=MS.gene09295.t1 |
| chr4.1 | exon | 14238761 | 14238967 | 14238761 | ID=MS.gene09295.t1.exon2;Parent=MS.gene09295.t1 |
| chr4.1 | CDS | 14238761 | 14238967 | 14238761 | ID=cds.MS.gene09295.t1;Parent=MS.gene09295.t1 |
| chr4.1 | exon | 14240865 | 14241045 | 14240865 | ID=MS.gene09295.t1.exon3;Parent=MS.gene09295.t1 |
| chr4.1 | CDS | 14240865 | 14241045 | 14240865 | ID=cds.MS.gene09295.t1;Parent=MS.gene09295.t1 |
| chr4.1 | exon | 14241278 | 14241426 | 14241278 | ID=MS.gene09295.t1.exon4;Parent=MS.gene09295.t1 |
| chr4.1 | CDS | 14241278 | 14241426 | 14241278 | ID=cds.MS.gene09295.t1;Parent=MS.gene09295.t1 |
| chr4.1 | exon | 14241724 | 14241951 | 14241724 | ID=MS.gene09295.t1.exon5;Parent=MS.gene09295.t1 |
| chr4.1 | CDS | 14241724 | 14241951 | 14241724 | ID=cds.MS.gene09295.t1;Parent=MS.gene09295.t1 |
| Gene Sequence |
| Protein sequence |
