AlfalfaGEDB | MS.gene09868

M. sativa cultivar XinJiangDaYe / MS.gene09868

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09868.t1	XP_003625486.1	100	55	0	0	1	55	1	55	2.70E-21	111.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09868.t1	Q2HT99	100.0	55	0	0	1	55	1	55	2.0e-21	111.3

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050020	MS.gene09868	0.86417	1.47E-64	-1.69E-46
MS.gene050563	MS.gene09868	0.810204	1.29E-50	-1.69E-46
MS.gene050584	MS.gene09868	0.902138	1.32E-78	-1.69E-46
MS.gene050585	MS.gene09868	0.896862	2.45E-76	-1.69E-46
MS.gene050586	MS.gene09868	0.822367	2.46E-53	-1.69E-46
MS.gene050587	MS.gene09868	0.835072	2.08E-56	-1.69E-46
MS.gene050807	MS.gene09868	0.842371	2.69E-58	-1.69E-46
MS.gene050808	MS.gene09868	0.814234	1.71E-51	-1.69E-46
MS.gene05143	MS.gene09868	0.806803	6.89E-50	-1.69E-46
MS.gene05157	MS.gene09868	0.810165	1.32E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene09868.t1	MTR_7g099670	98.077	104	2	0	1	104	1	104	3.16e-60	179
MS.gene09868.t1	MTR_1g069085	68.000	50	14	2	1	49	1	49	5.67e-14	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 44 sgRNAs with CRISPR-Local

Find 46 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGGTGTATGTTGTTGT+TGG	0.463389	7.3:+12862350	MS.gene09868:CDS
AACTTCATGACATTTGCTGG+TGG	0.621619	7.3:+12862444	MS.gene09868:CDS
AAGAACTTCATGACATTTGC+TGG	0.375624	7.3:+12862441	MS.gene09868:CDS
ACATTTGCTGGTGGTTATTC+AGG	0.231052	7.3:+12862453	MS.gene09868:CDS
ACCAACTGATGCTGGTTTGA+AGG	0.518003	7.3:+12862413	MS.gene09868:CDS
AGAAATGTACCAACTGATGC+TGG	0.575990	7.3:+12862405	MS.gene09868:CDS
ATCGGTGGTGATTTAGGTGG+TGG	0.527781	7.3:+12862519	MS.gene09868:CDS
CAAATGTCATGAAGTTCTTC+TGG	0.354882	7.3:-12862437	None:intergenic
CCACCTCCAATTCCACCAAA+AGG	0.542402	7.3:-12862495	None:intergenic
CTTAGGTGGACTTGGTGGTT+TGG	0.237390	7.3:+12862548	MS.gene09868:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATTCAGGAATAGGAAACAA+TGG	+	chr7.3:12862468-12862487	MS.gene09868:CDS	30.0%
AAAGTGGTGTATGTTGTTGT+TGG	+	chr7.3:12862350-12862369	MS.gene09868:CDS	35.0%
AAGAACTTCATGACATTTGC+TGG	+	chr7.3:12862441-12862460	MS.gene09868:CDS	35.0%
CAAATGTCATGAAGTTCTTC+TGG	-	chr7.3:12862440-12862459	None:intergenic	35.0%
AGAAATGTACCAACTGATGC+TGG	+	chr7.3:12862405-12862424	MS.gene09868:CDS	40.0%
GCTGGTGGTTATTCAGGAAT+AGG	+	chr7.3:12862459-12862478	MS.gene09868:CDS	45.0%
TCCTTCAAACCAGCATCAGT+TGG	-	chr7.3:12862417-12862436	None:intergenic	45.0%
ATCGGTGGTGATTTAGGTGG+TGG	+	chr7.3:12862519-12862538	MS.gene09868:CDS	50.0%
CCACCTCCAATTCCACCAAA+AGG	-	chr7.3:12862498-12862517	None:intergenic	50.0%
GGAATCGGTGGTGATTTAGG+TGG	+	chr7.3:12862516-12862535	MS.gene09868:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	12862345	12862659	12862345	ID=MS.gene09868
chr7.3	mRNA	12862345	12862659	12862345	ID=MS.gene09868.t1;Parent=MS.gene09868
chr7.3	exon	12862345	12862659	12862345	ID=MS.gene09868.t1.exon1;Parent=MS.gene09868.t1
chr7.3	CDS	12862345	12862659	12862345	ID=cds.MS.gene09868.t1;Parent=MS.gene09868.t1

Gene Sequence	>MS.gene09868 ATGGCAAAGTGGTGTATGTTGTTGTTGGTTCTTGCTCTTGTTGTGGCTACAACAAGTGCAAGAAATGTACCAACTGATGCTGGTTTGAAGGACCAGAAGAACTTCATGACATTTGCTGGTGGTTATTCAGGAATAGGAAACAATGGACTTCCTTTTGGTGGAATTGGAGGTGGAATCGGTGGTGATTTAGGTGGTGGTGGTGGCTTAGGTGGACTTGGTGGTTTGGGAGGACTTGGTGGTGTTGGTGGTGGAGCTGGTGGTGGTGTTGGAGGTGGTGTTGGAACTGGTGTTGGTGGTGTTCATCCTTTCCCTTAA
Protein sequence	>MS.gene09868.t1 MAKWCMLLLVLALVVATTSARNVPTDAGLKDQKNFMTFAGGYSGIGNNGLPFGGIGGGIGGDLGGGGGLGGLGGLGGLGGVGGGAGGGVGGGVGTGVGGVHPFP