Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20262.t1 | XP_003611639.1 | 98.5 | 1033 | 16 | 0 | 1 | 1033 | 1 | 1033 | 0.00E+00 | 1435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20262.t1 | F4JS25 | 65.5 | 1064 | 319 | 9 | 3 | 1033 | 4 | 1052 | 2.6e-229 | 797.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20262.t1 | G7K3X6 | 98.5 | 1033 | 16 | 0 | 1 | 1033 | 1 | 1033 | 0.0e+00 | 1435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049193 | MS.gene20262 | 0.80569 | 1.18E-49 | -1.69E-46 |
| MS.gene050084 | MS.gene20262 | 0.833662 | 4.69E-56 | -1.69E-46 |
| MS.gene050085 | MS.gene20262 | 0.838992 | 2.07E-57 | -1.69E-46 |
| MS.gene050359 | MS.gene20262 | 0.803795 | 2.94E-49 | -1.69E-46 |
| MS.gene050646 | MS.gene20262 | 0.801991 | 6.93E-49 | -1.69E-46 |
| MS.gene050931 | MS.gene20262 | 0.824592 | 7.43E-54 | -1.69E-46 |
| MS.gene051209 | MS.gene20262 | 0.805385 | 1.37E-49 | -1.69E-46 |
| MS.gene051381 | MS.gene20262 | 0.839703 | 1.35E-57 | -1.69E-46 |
| MS.gene051382 | MS.gene20262 | 0.803768 | 2.98E-49 | -1.69E-46 |
| MS.gene051642 | MS.gene20262 | 0.803041 | 4.21E-49 | -1.69E-46 |
| MS.gene052072 | MS.gene20262 | 0.810297 | 1.24E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene20262 | -0.81126 | 7.65E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene20262 | 0.844122 | 9.19E-59 | -1.69E-46 |
| MS.gene052609 | MS.gene20262 | 0.837394 | 5.33E-57 | -1.69E-46 |
| MS.gene052776 | MS.gene20262 | 0.800793 | 1.22E-48 | -1.69E-46 |
| MS.gene053143 | MS.gene20262 | 0.835201 | 1.93E-56 | -1.69E-46 |
| MS.gene056097 | MS.gene20262 | 0.804949 | 1.69E-49 | -1.69E-46 |
| MS.gene056519 | MS.gene20262 | 0.804632 | 1.97E-49 | -1.69E-46 |
| MS.gene056578 | MS.gene20262 | 0.823282 | 1.51E-53 | -1.69E-46 |
| MS.gene056881 | MS.gene20262 | 0.801826 | 7.50E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene20262 | 0.815613 | 8.45E-52 | -1.69E-46 |
| MS.gene059007 | MS.gene20262 | 0.862679 | 4.27E-64 | -1.69E-46 |
| MS.gene060933 | MS.gene20262 | 0.839822 | 1.26E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene20262 | 0.806279 | 8.89E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20262.t1 | MTR_5g016190 | 98.354 | 1033 | 17 | 0 | 1 | 1033 | 1 | 1033 | 0.0 | 2119 |
| MS.gene20262.t1 | MTR_5g016190 | 97.922 | 770 | 16 | 0 | 1 | 770 | 1 | 770 | 0.0 | 1558 |
| MS.gene20262.t1 | MTR_1g079510 | 22.568 | 257 | 199 | 0 | 289 | 545 | 246 | 502 | 1.71e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20262.t1 | AT4G37460 | 63.202 | 1068 | 337 | 14 | 3 | 1033 | 4 | 1052 | 0.0 | 1345 |
| MS.gene20262.t1 | AT4G37460 | 61.032 | 911 | 294 | 14 | 3 | 874 | 4 | 892 | 0.0 | 1088 |
| MS.gene20262.t1 | AT3G04240 | 24.561 | 228 | 154 | 3 | 324 | 542 | 5 | 223 | 5.31e-12 | 70.5 |
| MS.gene20262.t1 | AT3G04240 | 24.561 | 228 | 154 | 3 | 324 | 542 | 238 | 456 | 7.19e-12 | 70.5 |
Find 229 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAATCCACAAAAGAATT+TGG | 0.161405 | 5.1:-8479392 | None:intergenic |
| AAGTTGTTGGCGAGGATTTC+TGG | 0.167689 | 5.1:+8478344 | MS.gene20262:CDS |
| TTCTCACACACCCATGATTC+TGG | 0.213242 | 5.1:+8477222 | MS.gene20262:CDS |
| CTCTTCTAATTTCCCATCAT+TGG | 0.248614 | 5.1:-8477432 | None:intergenic |
| TCTCTTCACCTTTCATAGTT+TGG | 0.257090 | 5.1:-8477271 | None:intergenic |
| CTCAAATTATCAATAATATC+AGG | 0.268966 | 5.1:-8467198 | None:intergenic |
| TGCAGCGAGGAGTTTAATTC+TGG | 0.274412 | 5.1:+8477193 | MS.gene20262:intron |
| GCTGCATAAGCACGTGATTA+AGG | 0.277328 | 5.1:+8466081 | MS.gene20262:CDS |
| ATTTGGATCCAAGTTTAAAA+TGG | 0.278214 | 5.1:-8479375 | None:intergenic |
| TTACGATGCTGCACTGGATT+TGG | 0.282905 | 5.1:+8470706 | MS.gene20262:CDS |
| TTTGTTACTTGCTGCTAATA+TGG | 0.285236 | 5.1:+8479307 | MS.gene20262:CDS |
| GATCAGATTCTTCAAGTAAT+AGG | 0.287314 | 5.1:+8467016 | MS.gene20262:CDS |
| GGTCAGGCTCGGGCAGCCTT+GGG | 0.289219 | 5.1:+8467924 | MS.gene20262:CDS |
| AATTGCCTTGGACCAGTCTT+TGG | 0.290419 | 5.1:-8465881 | None:intergenic |
| GATAGAACTTGAAGAGCTTT+TGG | 0.292557 | 5.1:+8466930 | MS.gene20262:CDS |
| GCTTACTGTGGTGAAAATTA+TGG | 0.299897 | 5.1:+8479071 | MS.gene20262:CDS |
| GAGGAGTTTAATTCTGGATT+TGG | 0.307287 | 5.1:+8477199 | MS.gene20262:CDS |
| TAAGTCTGCCTACACATATT+TGG | 0.309097 | 5.1:+8469334 | MS.gene20262:CDS |
| CACAGGGTTTCCAAGTTGAT+TGG | 0.320928 | 5.1:+8479348 | MS.gene20262:CDS |
| AGGTCAGGCTCGGGCAGCCT+TGG | 0.328686 | 5.1:+8467923 | MS.gene20262:CDS |
| GGTCATGCACTTTCGGCTTT+GGG | 0.330622 | 5.1:+8466829 | MS.gene20262:intron |
| TGCTGCACTGGATTTGGAAT+TGG | 0.330853 | 5.1:+8470712 | MS.gene20262:CDS |
| CTGCTTGTGTGCAGCTGGAC+AGG | 0.334796 | 5.1:+8469306 | MS.gene20262:CDS |
| AGGTCATGCACTTTCGGCTT+TGG | 0.343493 | 5.1:+8466828 | MS.gene20262:intron |
| AGGGAAAGTGAACTTAAAAC+TGG | 0.343623 | 5.1:-8467319 | None:intergenic |
| TCATCTAGGTCATGCACTTT+CGG | 0.345299 | 5.1:+8466822 | MS.gene20262:intron |
| ATCATTCATCTTTCCAATGA+TGG | 0.347390 | 5.1:+8477419 | MS.gene20262:CDS |
| TAATTTGCCCAGTCAGAATA+GGG | 0.347592 | 5.1:+8474671 | MS.gene20262:CDS |
| CACAAAAGGTCTCCAAGATT+TGG | 0.355594 | 5.1:+8474562 | MS.gene20262:CDS |
| AGCTTGTTCACCCACACAAC+AGG | 0.362890 | 5.1:-8474837 | None:intergenic |
| TCTGACCTTTATAAAGTTGT+TGG | 0.363759 | 5.1:+8478331 | MS.gene20262:CDS |
| TTTACTCGATAGCTGTTAGA+TGG | 0.373102 | 5.1:+8474790 | MS.gene20262:CDS |
| AGGATTTCTGGTCGTCTACT+TGG | 0.376562 | 5.1:+8478356 | MS.gene20262:CDS |
| TCGGTTCGTTGCGAAGTTGC+AGG | 0.380303 | 5.1:-8465838 | None:intergenic |
| AATTCATCGAATGAAACTAA+TGG | 0.383335 | 5.1:+8466973 | MS.gene20262:CDS |
| AGCTTTCTGTTATAGTCAAT+TGG | 0.386717 | 5.1:+8466057 | MS.gene20262:CDS |
| AGTTGGATTTGCAGTTATGC+TGG | 0.389585 | 5.1:+8479283 | MS.gene20262:CDS |
| TGCTATTGAAGTTGCACAAA+AGG | 0.391958 | 5.1:+8474548 | MS.gene20262:CDS |
| CCTTTCTGCTTGTGTGCAGC+TGG | 0.395168 | 5.1:+8469301 | MS.gene20262:CDS |
| GGAAACCAGGGCAATCATAT+TGG | 0.396108 | 5.1:-8473430 | None:intergenic |
| GCATGCAGCTCGTAAATATA+AGG | 0.396667 | 5.1:-8470568 | None:intergenic |
| TTCCATGCCTCACCAGCAGC+TGG | 0.397972 | 5.1:-8467894 | None:intergenic |
| AGTGTGACAAACCTGATAAA+AGG | 0.402050 | 5.1:-8470768 | None:intergenic |
| GACAGTCTTTGCAATATCTA+AGG | 0.403332 | 5.1:-8477357 | None:intergenic |
| GCTATCAAAGATTTGACAAC+GGG | 0.407291 | 5.1:+8470516 | MS.gene20262:CDS |
| CTGATATTATTGATAATTTG+AGG | 0.412387 | 5.1:+8467199 | MS.gene20262:CDS |
| AAGATTTCCATTCCGCTTGA+AGG | 0.413667 | 5.1:-8474590 | None:intergenic |
| GCCTTTGAAACATCTTCATC+TGG | 0.413960 | 5.1:+8474720 | MS.gene20262:CDS |
| AAACTCACTGTTAAACTTTG+AGG | 0.415379 | 5.1:-8472906 | None:intergenic |
| TTTGCGTGAATCTTTAAGAA+AGG | 0.415664 | 5.1:+8473325 | MS.gene20262:CDS |
| TTAATTTGCCCAGTCAGAAT+AGG | 0.417331 | 5.1:+8474670 | MS.gene20262:CDS |
| CCATGCTTAGAGTTTGAGTT+GGG | 0.419373 | 5.1:-8474621 | None:intergenic |
| GGATTTGGAATTGGACTCAA+TGG | 0.420957 | 5.1:+8470721 | MS.gene20262:CDS |
| CCTCTTCCTATCAGTGCCTC+AGG | 0.422373 | 5.1:-8467713 | None:intergenic |
| GTGTAAAATGTCTGCTGTGT+TGG | 0.424119 | 5.1:-8468918 | None:intergenic |
| TTTGGCTTGTCCCAGAATCA+TGG | 0.425319 | 5.1:-8477233 | None:intergenic |
| TATTGCCACTTGACTTAGCT+TGG | 0.428624 | 5.1:-8467062 | None:intergenic |
| CCTCGCCAACAACTTTATAA+AGG | 0.431082 | 5.1:-8478336 | None:intergenic |
| TTCATTCATCATAAGAGCTC+AGG | 0.431356 | 5.1:-8479514 | None:intergenic |
| ACAACGGGGTTGAGCATTGA+TGG | 0.433032 | 5.1:+8470531 | MS.gene20262:CDS |
| TTCGGCTTTGGGAAGGAAAA+CGG | 0.436548 | 5.1:+8466840 | MS.gene20262:CDS |
| ACTCAAGTGCTGCAAATTGA+TGG | 0.437008 | 5.1:+8469945 | MS.gene20262:CDS |
| ATTACTTGAAGAATCTGATC+TGG | 0.438659 | 5.1:-8467013 | None:intergenic |
| AAACGGATGCTTTAGTGGTA+TGG | 0.440660 | 5.1:+8466857 | MS.gene20262:CDS |
| TGCATCATAGTCTTCCCATC+TGG | 0.440660 | 5.1:-8478719 | None:intergenic |
| CACTGTACCTGACGTCTATT+AGG | 0.441743 | 5.1:-8473455 | None:intergenic |
| AAGGAAAACGGATGCTTTAG+TGG | 0.445404 | 5.1:+8466852 | MS.gene20262:CDS |
| GCAGAAGTCTGCTCTTATAC+AGG | 0.446954 | 5.1:+8473382 | MS.gene20262:CDS |
| ATCGAGGATTCGAATTGCCT+TGG | 0.449257 | 5.1:-8465893 | None:intergenic |
| TGTAAAATGTCTGCTGTGTT+GGG | 0.449376 | 5.1:-8468917 | None:intergenic |
| AAATGGCTTCCCAATCAACT+TGG | 0.449609 | 5.1:-8479358 | None:intergenic |
| GTCAGGCTCGGGCAGCCTTG+GGG | 0.451685 | 5.1:+8467925 | MS.gene20262:CDS |
| GGCGTTCTGTTCCATGCAAT+GGG | 0.453824 | 5.1:+8470116 | MS.gene20262:CDS |
| ACAGGGTTTCCAAGTTGATT+GGG | 0.454700 | 5.1:+8479349 | MS.gene20262:CDS |
| TTGCGTGAATCTTTAAGAAA+GGG | 0.458380 | 5.1:+8473326 | MS.gene20262:CDS |
| TCCCATCTGGCAGGTGTACA+AGG | 0.461353 | 5.1:-8478706 | None:intergenic |
| GAAGATTGAACCAGATGTCT+TGG | 0.463030 | 5.1:-8465942 | None:intergenic |
| GGTCTGGCATTGTCTTCAAT+TGG | 0.463090 | 5.1:+8469455 | MS.gene20262:CDS |
| GTAAGAAATTCTCTGTTGCT+CGG | 0.464767 | 5.1:+8467370 | MS.gene20262:CDS |
| TTGAAGGATACGCCAAATCT+TGG | 0.467124 | 5.1:-8474574 | None:intergenic |
| CGTCTATTAGGCAGGAAACC+AGG | 0.467863 | 5.1:-8473443 | None:intergenic |
| TAAGAAATTCTCTGTTGCTC+GGG | 0.470291 | 5.1:+8467371 | MS.gene20262:CDS |
| GATCATTTGCAGGTTAATGA+AGG | 0.470810 | 5.1:+8467511 | MS.gene20262:intron |
| ATTTATCAGCATCGTATGGC+AGG | 0.473906 | 5.1:+8474519 | MS.gene20262:intron |
| TCAGGCTCGGGCAGCCTTGG+GGG | 0.476210 | 5.1:+8467926 | MS.gene20262:CDS |
| GGAAGACTATGATGCAGAAA+TGG | 0.482699 | 5.1:+8478726 | MS.gene20262:CDS |
| GCATACCCTGAGGCACTGAT+AGG | 0.487195 | 5.1:+8467707 | MS.gene20262:CDS |
| TCAGGTGTCCCCATGCTTCA+AGG | 0.487898 | 5.1:-8469535 | None:intergenic |
| TTTGCTGGTTTGATATTGAT+GGG | 0.487906 | 5.1:+8472927 | MS.gene20262:CDS |
| GAAGAGGAGAGGTCAGGCTC+GGG | 0.488598 | 5.1:+8467914 | MS.gene20262:CDS |
| TCTCACACACCCATGATTCT+GGG | 0.489880 | 5.1:+8477223 | MS.gene20262:CDS |
| TAAAAGTTTCCTTGAAGCAT+GGG | 0.490945 | 5.1:+8469526 | MS.gene20262:CDS |
| CACAACAGGGTCACAAGGCT+CGG | 0.491285 | 5.1:-8474823 | None:intergenic |
| TGCAACAGTACTGCATTTGA+AGG | 0.491467 | 5.1:+8478379 | MS.gene20262:CDS |
| CCACCGCTATCCAAGACATC+TGG | 0.491651 | 5.1:+8465932 | MS.gene20262:CDS |
| TGGCGTTCTGTTCCATGCAA+TGG | 0.492835 | 5.1:+8470115 | MS.gene20262:CDS |
| GCCATGCTTAGAGTTTGAGT+TGG | 0.492933 | 5.1:-8474622 | None:intergenic |
| AAACTCTAAGCATGGCAAAC+GGG | 0.494302 | 5.1:+8474629 | MS.gene20262:CDS |
| TCATTCATCTTTCCAATGAT+GGG | 0.494468 | 5.1:+8477420 | MS.gene20262:CDS |
| AAGAATCTGATCTGGCTTGT+GGG | 0.496871 | 5.1:-8467005 | None:intergenic |
| TCCAAAGAATGTATGCGAAA+AGG | 0.497750 | 5.1:+8473286 | MS.gene20262:CDS |
| TCTAGAGGAACTGCTGTAGT+TGG | 0.498898 | 5.1:+8479266 | MS.gene20262:CDS |
| TGCACCTCCCCTATTCTGAC+TGG | 0.501045 | 5.1:-8474679 | None:intergenic |
| CAAACTCTAAGCATGGCAAA+CGG | 0.502444 | 5.1:+8474628 | MS.gene20262:CDS |
| TGCTTGTGTGCAGCTGGACA+GGG | 0.503059 | 5.1:+8469307 | MS.gene20262:CDS |
| TGGAAAGTAACGGACAACTT+TGG | 0.503878 | 5.1:-8477251 | None:intergenic |
| CCTGATAAAAGGCAAGGCAC+TGG | 0.505143 | 5.1:-8470757 | None:intergenic |
| CTCTGAAGGTGACAACCTCA+TGG | 0.507207 | 5.1:+8479435 | MS.gene20262:CDS |
| CAAGGATTACGATGCTGCAC+TGG | 0.508364 | 5.1:+8470700 | MS.gene20262:CDS |
| CTTCAAGCTTATATTCTGAA+AGG | 0.508679 | 5.1:+8466139 | MS.gene20262:CDS |
| GTTGGATTTGCAGTTATGCT+GGG | 0.511092 | 5.1:+8479284 | MS.gene20262:CDS |
| TTGTGGATTCAGTGAAGAGT+TGG | 0.511148 | 5.1:+8479402 | MS.gene20262:CDS |
| ATAAAAGTTTCCTTGAAGCA+TGG | 0.511831 | 5.1:+8469525 | MS.gene20262:CDS |
| AACGGATGCTTTAGTGGTAT+GGG | 0.512135 | 5.1:+8466858 | MS.gene20262:CDS |
| GCTACAGAGCTTCGCTAGCT+CGG | 0.513986 | 5.1:-8465857 | None:intergenic |
| AGTCAGAATAGGGGAGGTGC+AGG | 0.514865 | 5.1:+8474681 | MS.gene20262:CDS |
| AGACATTCAAGAGCCTTTGT+CGG | 0.515197 | 5.1:-8469921 | None:intergenic |
| TTTCCAGCCGTCACATGTCA+TGG | 0.516975 | 5.1:+8474760 | MS.gene20262:CDS |
| TAAATATAAGGACTCAATGT+TGG | 0.517773 | 5.1:-8470556 | None:intergenic |
| AAATGTGATGGCCAAGTGAA+TGG | 0.518122 | 5.1:+8467171 | MS.gene20262:CDS |
| GGAAGAGGAGAGGTCAGGCT+CGG | 0.524536 | 5.1:+8467913 | MS.gene20262:CDS |
| TTATACAGGAAACAGCTTGA+AGG | 0.524963 | 5.1:+8478480 | MS.gene20262:intron |
| GGCGTATCCTTCAAGCGGAA+TGG | 0.525729 | 5.1:+8474583 | MS.gene20262:CDS |
| ACCTTGTACACCTGCCAGAT+GGG | 0.528463 | 5.1:+8478705 | MS.gene20262:CDS |
| GCCTTGTGACCCTGTTGTGT+GGG | 0.530489 | 5.1:+8474827 | MS.gene20262:CDS |
| TTGGCTTGTCCCAGAATCAT+GGG | 0.530934 | 5.1:-8477232 | None:intergenic |
| TTTCCATGACATGTGACGGC+TGG | 0.531208 | 5.1:-8474763 | None:intergenic |
| ACAGCAGTTCCTCTAGATAG+TGG | 0.532325 | 5.1:-8479260 | None:intergenic |
| TCATAGTCTTCCCATCTGGC+AGG | 0.533339 | 5.1:-8478715 | None:intergenic |
| CACCTTGTACACCTGCCAGA+TGG | 0.533844 | 5.1:+8478704 | MS.gene20262:CDS |
| TCAAATTATCAATAATATCA+GGG | 0.534762 | 5.1:-8467197 | None:intergenic |
| GAAGAATCTGATCTGGCTTG+TGG | 0.535513 | 5.1:-8467006 | None:intergenic |
| AGTTCATAGATACCTGAGTC+AGG | 0.535673 | 5.1:-8469553 | None:intergenic |
| TATACAGGAAACAGCTTGAA+GGG | 0.535976 | 5.1:+8478481 | MS.gene20262:intron |
| AGCTCTGTAGCACCAAAGAC+TGG | 0.536173 | 5.1:+8465869 | MS.gene20262:CDS |
| ACACAATCAGATATTGAAAG+AGG | 0.538111 | 5.1:+8467679 | MS.gene20262:intron |
| AAAATCCAATATGATTGCCC+TGG | 0.542859 | 5.1:+8473425 | MS.gene20262:CDS |
| TTTCTTAAAGATTCACGCAA+AGG | 0.543748 | 5.1:-8473323 | None:intergenic |
| ATACAATATAATCCAGCTGC+TGG | 0.544254 | 5.1:+8467882 | MS.gene20262:CDS |
| ACCTATGCTCTCCCATTGCA+TGG | 0.547341 | 5.1:-8470127 | None:intergenic |
| CTTTGTATTGTCCGACAGCA+TGG | 0.547502 | 5.1:-8470593 | None:intergenic |
| GTTCACAGGAAGCATCCCAC+AGG | 0.548703 | 5.1:+8479331 | MS.gene20262:CDS |
| ATCCAGCTGCTGGTGAGGCA+TGG | 0.550015 | 5.1:+8467892 | MS.gene20262:CDS |
| ATACAGGCTGCAGACTCCAT+TGG | 0.550428 | 5.1:+8473398 | MS.gene20262:CDS |
| CTCAAGTGCTGCAAATTGAT+GGG | 0.552009 | 5.1:+8469946 | MS.gene20262:CDS |
| TTTCCTGCCTAATAGACGTC+AGG | 0.552298 | 5.1:+8473448 | MS.gene20262:CDS |
| GTCTATTAGGCAGGAAACCA+GGG | 0.555704 | 5.1:-8473442 | None:intergenic |
| GGCATGGAAGAGGAGAGGTC+AGG | 0.555821 | 5.1:+8467908 | MS.gene20262:CDS |
| ATGCACTTTCGGCTTTGGGA+AGG | 0.556315 | 5.1:+8466833 | MS.gene20262:CDS |
| GTACCTGACGTCTATTAGGC+AGG | 0.559295 | 5.1:-8473451 | None:intergenic |
| ATCATTTGCAGGTTAATGAA+GGG | 0.559538 | 5.1:+8467512 | MS.gene20262:intron |
| AGGTTGTCACCTTCAGAGAC+GGG | 0.559701 | 5.1:-8479430 | None:intergenic |
| GCTTTAGTGGTATGGGAGCA+AGG | 0.560849 | 5.1:+8466865 | MS.gene20262:CDS |
| CTGCTGGTGAGGCATGGAAG+AGG | 0.561340 | 5.1:+8467898 | MS.gene20262:CDS |
| CTCTTCCTATCAGTGCCTCA+GGG | 0.561531 | 5.1:-8467712 | None:intergenic |
| TTTCATAGTTTGGAAAGTAA+CGG | 0.561725 | 5.1:-8477261 | None:intergenic |
| GTTACTTTCCAAACTATGAA+AGG | 0.565328 | 5.1:+8477263 | MS.gene20262:CDS |
| TATCAGGGCTTCCATTCACT+TGG | 0.566692 | 5.1:-8467182 | None:intergenic |
| CCTGAGGCACTGATAGGAAG+AGG | 0.568213 | 5.1:+8467713 | MS.gene20262:CDS |
| CTGCTGATAAATTTGATGCA+AGG | 0.572001 | 5.1:+8467115 | MS.gene20262:CDS |
| AGGAATGAATTAAATAGTGA+AGG | 0.572498 | 5.1:+8467135 | MS.gene20262:CDS |
| AGCATGGCAAACGGGTTCGA+AGG | 0.574319 | 5.1:+8474637 | MS.gene20262:CDS |
| ATATAATCCAGCTGCTGGTG+AGG | 0.576474 | 5.1:+8467887 | MS.gene20262:CDS |
| GCCAGATGAAGATGTTTCAA+AGG | 0.578336 | 5.1:-8474721 | None:intergenic |
| TGGCAAACGGGTTCGAAGGA+GGG | 0.578933 | 5.1:+8474641 | MS.gene20262:CDS |
| AGCCTTGTGACCCTGTTGTG+TGG | 0.579095 | 5.1:+8474826 | MS.gene20262:CDS |
| GAGGTTGTCACCTTCAGAGA+CGG | 0.579821 | 5.1:-8479431 | None:intergenic |
| TCTTATTTATCAGCATCGTA+TGG | 0.580406 | 5.1:+8474515 | MS.gene20262:intron |
| CCAGCTGCACACAAGCAGAA+AGG | 0.582032 | 5.1:-8469301 | None:intergenic |
| ATGGCAAACGGGTTCGAAGG+AGG | 0.583605 | 5.1:+8474640 | MS.gene20262:CDS |
| CTTAAAGATTCACGCAAAGG+AGG | 0.585713 | 5.1:-8473320 | None:intergenic |
| GGAAACAGCTTGAAGGGACA+AGG | 0.586249 | 5.1:+8478487 | MS.gene20262:intron |
| ACCCACACAACAGGGTCACA+AGG | 0.586433 | 5.1:-8474828 | None:intergenic |
| AAAGAGAGATCTTATGTCCA+CGG | 0.587772 | 5.1:+8477383 | MS.gene20262:CDS |
| CCCAACTCAAACTCTAAGCA+TGG | 0.589222 | 5.1:+8474621 | MS.gene20262:CDS |
| CCTTTATAAAGTTGTTGGCG+AGG | 0.589554 | 5.1:+8478336 | MS.gene20262:CDS |
| TATCTTTCCATGACATGTGA+CGG | 0.590789 | 5.1:-8474767 | None:intergenic |
| GGCTATCGAAGACTTGACTA+AGG | 0.590992 | 5.1:+8468880 | MS.gene20262:intron |
| AATACAAGTGATAAATCTGA+GGG | 0.598222 | 5.1:+8467081 | MS.gene20262:CDS |
| ATGCAGAAATGGCGATGGCG+TGG | 0.598667 | 5.1:+8478737 | MS.gene20262:CDS |
| ATATAAGCTTGAAGAAGCAA+AGG | 0.599589 | 5.1:-8466130 | None:intergenic |
| TTGGCTATACCCGTCTCTGA+AGG | 0.599613 | 5.1:+8479421 | MS.gene20262:CDS |
| CCAGATGTCTTGGATAGCGG+TGG | 0.603078 | 5.1:-8465932 | None:intergenic |
| AATGAATTAAATAGTGAAGG+CGG | 0.603968 | 5.1:+8467138 | MS.gene20262:CDS |
| GCACCTCCCCTATTCTGACT+GGG | 0.604886 | 5.1:-8474678 | None:intergenic |
| CAATGATGGGAAATTAGAAG+AGG | 0.605924 | 5.1:+8477433 | MS.gene20262:CDS |
| GCTTTCACGGGGAATAGCAG+AGG | 0.609159 | 5.1:+8467428 | MS.gene20262:CDS |
| TGCAGAAATGGCGATGGCGT+GGG | 0.610537 | 5.1:+8478738 | MS.gene20262:CDS |
| TCATTCATCATAAGAGCTCA+GGG | 0.611864 | 5.1:-8479513 | None:intergenic |
| AGAGTTCAACACTGCAGTTG+AGG | 0.614458 | 5.1:+8469277 | MS.gene20262:CDS |
| CAATACAAGTGATAAATCTG+AGG | 0.616137 | 5.1:+8467080 | MS.gene20262:CDS |
| TCCATGCAATGGGAGAGCAT+AGG | 0.616757 | 5.1:+8470126 | MS.gene20262:CDS |
| GCTAGAGCTTATCATTTGCG+TGG | 0.623608 | 5.1:+8470095 | MS.gene20262:CDS |
| TTGTGTGGGTGAACAAGCTA+AGG | 0.624390 | 5.1:+8474841 | MS.gene20262:CDS |
| GCTGCTAATATGGAGTTCAC+AGG | 0.626051 | 5.1:+8479317 | MS.gene20262:CDS |
| CTATGATGCAGAAATGGCGA+TGG | 0.628482 | 5.1:+8478732 | MS.gene20262:CDS |
| GATAAAGTGTTAAATAATAG+CGG | 0.631353 | 5.1:+8467252 | MS.gene20262:CDS |
| GAGAGCCAAGCTAAGTCAAG+TGG | 0.633271 | 5.1:+8467057 | MS.gene20262:CDS |
| GAACCAGATGTCTTGGATAG+CGG | 0.635331 | 5.1:-8465935 | None:intergenic |
| GATTTGGCGTATCCTTCAAG+CGG | 0.636875 | 5.1:+8474578 | MS.gene20262:CDS |
| AGCATGGGGACACCTGACTC+AGG | 0.637621 | 5.1:+8469541 | MS.gene20262:CDS |
| AATTTGCCCAGTCAGAATAG+GGG | 0.637642 | 5.1:+8474672 | MS.gene20262:CDS |
| GGAGAGTCTAGTAAATGTGA+TGG | 0.639158 | 5.1:+8467159 | MS.gene20262:CDS |
| TTGCTGGTTTGATATTGATG+GGG | 0.639545 | 5.1:+8472928 | MS.gene20262:CDS |
| AATCAACTTGGAAACCCTGT+GGG | 0.639831 | 5.1:-8479346 | None:intergenic |
| GCTTGTTCACCCACACAACA+GGG | 0.640471 | 5.1:-8474836 | None:intergenic |
| AGATTTATCAAATCCGACAA+AGG | 0.645653 | 5.1:+8469908 | MS.gene20262:CDS |
| AAAAGTTTCCTTGAAGCATG+GGG | 0.646755 | 5.1:+8469527 | MS.gene20262:CDS |
| GCAACAGTACTGCATTTGAA+GGG | 0.646890 | 5.1:+8478380 | MS.gene20262:CDS |
| GCTGCATGCTACCATGCTGT+CGG | 0.647794 | 5.1:+8470582 | MS.gene20262:CDS |
| GGGAAAGTGAACTTAAAACT+GGG | 0.650631 | 5.1:-8467318 | None:intergenic |
| AGGACCCACCAAATATGTGT+AGG | 0.656129 | 5.1:-8469342 | None:intergenic |
| CAATCAACTTGGAAACCCTG+TGG | 0.656293 | 5.1:-8479347 | None:intergenic |
| GGCTATCAAAGATTTGACAA+CGG | 0.656617 | 5.1:+8470515 | MS.gene20262:CDS |
| TTCACAGGAAGCATCCCACA+GGG | 0.657987 | 5.1:+8479332 | MS.gene20262:CDS |
| GACAAACCTGATAAAAGGCA+AGG | 0.661747 | 5.1:-8470763 | None:intergenic |
| ATTGAGAAATGAGAGAATCG+AGG | 0.664474 | 5.1:-8465909 | None:intergenic |
| TAGCACCAAAGACTGGTCCA+AGG | 0.664799 | 5.1:+8465876 | MS.gene20262:CDS |
| CTGAGGCACTGATAGGAAGA+GGG | 0.665638 | 5.1:+8467714 | MS.gene20262:CDS |
| TTGCCCAGTCAGAATAGGGG+AGG | 0.668110 | 5.1:+8474675 | MS.gene20262:CDS |
| GGTGAGGCATGGAAGAGGAG+AGG | 0.672074 | 5.1:+8467903 | MS.gene20262:CDS |
| GCTCTCTGCAATGCTTACTG+TGG | 0.674990 | 5.1:+8479059 | MS.gene20262:CDS |
| GAAACAGCTTGAAGGGACAA+GGG | 0.685092 | 5.1:+8478488 | MS.gene20262:CDS |
| TGCTGTCGGACAATACAAAG+AGG | 0.685800 | 5.1:+8470596 | MS.gene20262:CDS |
| TGGTGAATATAAGAAAGCTG+AGG | 0.687669 | 5.1:+8469475 | MS.gene20262:CDS |
| AAGTGCTGCAAATTGATGGG+AGG | 0.688987 | 5.1:+8469949 | MS.gene20262:CDS |
| ATCATGATAGTCTTTCCATG+AGG | 0.718536 | 5.1:-8479450 | None:intergenic |
| AGAGGACTCTGCATACCCTG+AGG | 0.759786 | 5.1:+8467697 | MS.gene20262:CDS |
| CTATCAAAGATTTGACAACG+GGG | 0.780372 | 5.1:+8470517 | MS.gene20262:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 8465829 | 8479535 | 8465829 | ID=MS.gene20262 |
| chr5.1 | mRNA | 8465829 | 8479535 | 8465829 | ID=MS.gene20262.t1;Parent=MS.gene20262 |
| chr5.1 | exon | 8465829 | 8465953 | 8465829 | ID=MS.gene20262.t1.exon1;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8465829 | 8465953 | 8465829 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8466051 | 8466160 | 8466051 | ID=MS.gene20262.t1.exon2;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8466051 | 8466160 | 8466051 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8466830 | 8467449 | 8466830 | ID=MS.gene20262.t1.exon3;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8466830 | 8467449 | 8466830 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8467523 | 8467567 | 8467523 | ID=MS.gene20262.t1.exon4;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8467523 | 8467567 | 8467523 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8467689 | 8467790 | 8467689 | ID=MS.gene20262.t1.exon5;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8467689 | 8467790 | 8467689 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8467879 | 8467959 | 8467879 | ID=MS.gene20262.t1.exon6;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8467879 | 8467959 | 8467879 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8468881 | 8468947 | 8468881 | ID=MS.gene20262.t1.exon7;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8468881 | 8468947 | 8468881 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8469255 | 8469355 | 8469255 | ID=MS.gene20262.t1.exon8;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8469255 | 8469355 | 8469255 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8469455 | 8469562 | 8469455 | ID=MS.gene20262.t1.exon9;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8469455 | 8469562 | 8469455 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8469900 | 8469970 | 8469900 | ID=MS.gene20262.t1.exon10;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8469900 | 8469970 | 8469900 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8470091 | 8470147 | 8470091 | ID=MS.gene20262.t1.exon11;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8470091 | 8470147 | 8470091 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8470512 | 8470620 | 8470512 | ID=MS.gene20262.t1.exon12;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8470512 | 8470620 | 8470512 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8470698 | 8470778 | 8470698 | ID=MS.gene20262.t1.exon13;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8470698 | 8470778 | 8470698 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8472884 | 8472970 | 8472884 | ID=MS.gene20262.t1.exon14;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8472884 | 8472970 | 8472884 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8473263 | 8473469 | 8473263 | ID=MS.gene20262.t1.exon15;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8473263 | 8473469 | 8473263 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8474528 | 8474862 | 8474528 | ID=MS.gene20262.t1.exon16;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8474528 | 8474862 | 8474528 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8477198 | 8477284 | 8477198 | ID=MS.gene20262.t1.exon17;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8477198 | 8477284 | 8477198 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8477355 | 8477454 | 8477355 | ID=MS.gene20262.t1.exon18;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8477355 | 8477454 | 8477355 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8478310 | 8478401 | 8478310 | ID=MS.gene20262.t1.exon19;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8478310 | 8478401 | 8478310 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8478488 | 8478526 | 8478488 | ID=MS.gene20262.t1.exon20;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8478488 | 8478526 | 8478488 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8478672 | 8478762 | 8478672 | ID=MS.gene20262.t1.exon21;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8478672 | 8478762 | 8478672 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8479059 | 8479156 | 8479059 | ID=MS.gene20262.t1.exon22;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8479059 | 8479156 | 8479059 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| chr5.1 | exon | 8479247 | 8479535 | 8479247 | ID=MS.gene20262.t1.exon23;Parent=MS.gene20262.t1 |
| chr5.1 | CDS | 8479247 | 8479535 | 8479247 | ID=cds.MS.gene20262.t1;Parent=MS.gene20262.t1 |
| Gene Sequence |
| Protein sequence |
