Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20354.t1 | AEE00202.1 | 99.6 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 6.80E-154 | 553.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20354.t1 | A7VLV1 | 87.0 | 262 | 27 | 3 | 1 | 260 | 1 | 257 | 9.1e-131 | 467.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20354.t1 | F8TCY0 | 99.6 | 263 | 1 | 0 | 1 | 263 | 1 | 263 | 4.9e-154 | 553.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049185 | MS.gene20354 | 0.80742 | 5.10E-50 | -1.69E-46 |
| MS.gene050680 | MS.gene20354 | 0.818281 | 2.13E-52 | -1.69E-46 |
| MS.gene051368 | MS.gene20354 | 0.803918 | 2.77E-49 | -1.69E-46 |
| MS.gene052159 | MS.gene20354 | 0.809098 | 2.24E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene20354 | 0.803734 | 3.03E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene20354 | 0.80717 | 5.76E-50 | -1.69E-46 |
| MS.gene054556 | MS.gene20354 | 0.80841 | 3.14E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene20354 | 0.838308 | 3.11E-57 | -1.69E-46 |
| MS.gene059160 | MS.gene20354 | 0.840173 | 1.02E-57 | -1.69E-46 |
| MS.gene059161 | MS.gene20354 | 0.851021 | 1.16E-60 | -1.69E-46 |
| MS.gene059162 | MS.gene20354 | 0.848376 | 6.38E-60 | -1.69E-46 |
| MS.gene059609 | MS.gene20354 | 0.836148 | 1.11E-56 | -1.69E-46 |
| MS.gene061114 | MS.gene20354 | -0.805488 | 1.30E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20354.t1 | MTR_5g011120 | 98.099 | 263 | 5 | 0 | 1 | 263 | 1 | 263 | 0.0 | 540 |
| MS.gene20354.t1 | MTR_3g088795 | 48.864 | 176 | 85 | 3 | 38 | 212 | 50 | 221 | 1.02e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20354.t1 | AT4G22920 | 67.704 | 257 | 69 | 4 | 11 | 260 | 9 | 258 | 1.98e-122 | 350 |
| MS.gene20354.t1 | AT4G22920 | 67.704 | 257 | 69 | 4 | 11 | 260 | 9 | 258 | 1.98e-122 | 350 |
| MS.gene20354.t1 | AT4G11910 | 63.889 | 252 | 86 | 4 | 11 | 257 | 9 | 260 | 1.44e-108 | 315 |
| MS.gene20354.t1 | AT4G11911 | 64.069 | 231 | 80 | 2 | 11 | 239 | 9 | 238 | 1.73e-102 | 299 |
| MS.gene20354.t1 | AT4G11911 | 69.849 | 199 | 59 | 1 | 41 | 239 | 1 | 198 | 2.00e-98 | 288 |
| MS.gene20354.t1 | AT1G44000 | 51.913 | 183 | 79 | 5 | 38 | 216 | 57 | 234 | 3.65e-57 | 184 |
Find 66 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATAACCGTCTTCTATT+TGG | 0.148851 | 5.1:-4701253 | None:intergenic |
| CATTCTACCTTCTTGAATTC+TGG | 0.156627 | 5.1:-4703179 | None:intergenic |
| GAACAGGTTGCTAGGTTATT+TGG | 0.187592 | 5.1:+4701398 | MS.gene20354:intron |
| CCAAAGGGACCACCAAAATT+TGG | 0.219438 | 5.1:+4703244 | MS.gene20354:CDS |
| ACCAATGCTTCCTGTAATTC+AGG | 0.279537 | 5.1:-4703131 | None:intergenic |
| GCTGAGGTAGGGCCAAATTT+TGG | 0.301168 | 5.1:-4703256 | None:intergenic |
| AAATACCTGAGAGTTATTAA+TGG | 0.325107 | 5.1:-4701561 | None:intergenic |
| CACCAACTATCCTGAATTAC+AGG | 0.327258 | 5.1:+4703121 | MS.gene20354:CDS |
| TGAGTTTCAATTCCATCAAT+AGG | 0.352407 | 5.1:-4703368 | None:intergenic |
| TAAGTCCTTGGAAGATTTCC+TGG | 0.366121 | 5.1:-4701485 | None:intergenic |
| GGTTGGGAAGCCTCCTTTAG+TGG | 0.373904 | 5.1:-4703209 | None:intergenic |
| ATTCAAGAAGGTAGAATGTT+GGG | 0.383024 | 5.1:+4703184 | MS.gene20354:CDS |
| CACATACAGGAACAATTGAT+TGG | 0.393271 | 5.1:-4701282 | None:intergenic |
| TTCCAAATAGAAGACGGTTA+TGG | 0.397479 | 5.1:+4701251 | MS.gene20354:CDS |
| GATACTTATGAACCTATTGA+TGG | 0.400985 | 5.1:+4703356 | MS.gene20354:CDS |
| TTGGGTCCCACTAGTAGGTT+GGG | 0.401919 | 5.1:-4703225 | None:intergenic |
| CATGTTCATTGTCACATTAG+TGG | 0.407387 | 5.1:+4701829 | MS.gene20354:CDS |
| TGATTTGGTTTAGGTATTGA+AGG | 0.414490 | 5.1:+4703070 | MS.gene20354:intron |
| AATTACAGGAAGCATTGGTT+TGG | 0.424733 | 5.1:+4703135 | MS.gene20354:CDS |
| ATTACAGGAAGCATTGGTTT+GGG | 0.429267 | 5.1:+4703136 | MS.gene20354:CDS |
| ATTTGAAGCATCAAAATTGA+AGG | 0.430414 | 5.1:+4701430 | MS.gene20354:CDS |
| TCCCTTTGGGTCCCACTAGT+AGG | 0.437715 | 5.1:-4703230 | None:intergenic |
| AGGTTTATGTTGAGGTGAAA+AGG | 0.439529 | 5.1:-4701224 | None:intergenic |
| ACCTCATTAGAGCACGGCAT+TGG | 0.445650 | 5.1:-4703326 | None:intergenic |
| TTCCTGTAATTCAGGATAGT+TGG | 0.452404 | 5.1:-4703123 | None:intergenic |
| CCTCATTAGAGCACGGCATT+GGG | 0.453522 | 5.1:-4703325 | None:intergenic |
| TCCTGAATTACAGGAAGCAT+TGG | 0.454594 | 5.1:+4703130 | MS.gene20354:CDS |
| TTTGGGTCCCACTAGTAGGT+TGG | 0.459521 | 5.1:-4703226 | None:intergenic |
| TTTGATGCTTCAAATATAGC+TGG | 0.465176 | 5.1:-4701422 | None:intergenic |
| TCAAACCATTAATAACTCTC+AGG | 0.470517 | 5.1:+4701556 | MS.gene20354:CDS |
| TTCAATTGCAGTTGCAGGGA+TGG | 0.488186 | 5.1:+4701740 | MS.gene20354:intron |
| AACTTAGAAGTGAGCATAGG+AGG | 0.493060 | 5.1:-4701193 | None:intergenic |
| TTCTTGACATGGCTGAGGTA+GGG | 0.498887 | 5.1:-4703267 | None:intergenic |
| AGAATGTTGGGGTCCACTAA+AGG | 0.517602 | 5.1:+4703196 | MS.gene20354:CDS |
| ATGGTATAATAGATTGCAAA+GGG | 0.522358 | 5.1:+4701759 | MS.gene20354:CDS |
| CCCAATGCCGTGCTCTAATG+AGG | 0.522660 | 5.1:+4703325 | MS.gene20354:CDS |
| ACCTACTAGTGGGACCCAAA+GGG | 0.523997 | 5.1:+4703229 | MS.gene20354:CDS |
| TTTCTTGACATGGCTGAGGT+AGG | 0.526253 | 5.1:-4703268 | None:intergenic |
| ATTGATGAAGACAAACATCC+AGG | 0.527903 | 5.1:+4701467 | MS.gene20354:CDS |
| TGTGTTAACGTATAAGTCCT+TGG | 0.528432 | 5.1:-4701497 | None:intergenic |
| TGTAACCTCAAAACTCACTT+TGG | 0.528670 | 5.1:+4701526 | MS.gene20354:CDS |
| TTATGTTGAGGTGAAAAGGA+AGG | 0.536070 | 5.1:-4701220 | None:intergenic |
| GGAATTCAATTGCAGTTGCA+GGG | 0.536678 | 5.1:+4701736 | MS.gene20354:intron |
| GGCATTGGGCTCAACTTCAA+CGG | 0.552318 | 5.1:-4703311 | None:intergenic |
| AACCTACTAGTGGGACCCAA+AGG | 0.558097 | 5.1:+4703228 | MS.gene20354:CDS |
| CACTAATGTGACAATGAACA+TGG | 0.571160 | 5.1:-4701828 | None:intergenic |
| AAAGATTCCAGAATTCAAGA+AGG | 0.574918 | 5.1:+4703172 | MS.gene20354:CDS |
| AATTCAAGAAGGTAGAATGT+TGG | 0.577576 | 5.1:+4703183 | MS.gene20354:CDS |
| TTGAACTTAGAAGTGAGCAT+AGG | 0.579985 | 5.1:-4701196 | None:intergenic |
| GAGCATAGGAGGAGGAGCAG+TGG | 0.585361 | 5.1:-4701182 | None:intergenic |
| TTAGAAGTGAGCATAGGAGG+AGG | 0.595572 | 5.1:-4701190 | None:intergenic |
| AGTTGTGGCGCAGTGGAAGA+AGG | 0.597675 | 5.1:+4701786 | MS.gene20354:CDS |
| ATTGCAAAGGGATGAAGTTG+TGG | 0.601150 | 5.1:+4701771 | MS.gene20354:CDS |
| TTCAAGAAGGTAGAATGTTG+GGG | 0.609386 | 5.1:+4703185 | MS.gene20354:CDS |
| AACATCCAGGAAATCTTCCA+AGG | 0.610037 | 5.1:+4701480 | MS.gene20354:CDS |
| GTTCATTGTCACATTAGTGG+TGG | 0.617241 | 5.1:+4701832 | MS.gene20354:CDS |
| GAGGCTTCCCAACCTACTAG+TGG | 0.619748 | 5.1:+4703218 | MS.gene20354:CDS |
| GGCGCAGTGGAAGAAGGTGA+AGG | 0.625074 | 5.1:+4701792 | MS.gene20354:CDS |
| GCGCAGTGGAAGAAGGTGAA+GGG | 0.627737 | 5.1:+4701793 | MS.gene20354:CDS |
| GGGATGAAGTTGTGGCGCAG+TGG | 0.632593 | 5.1:+4701779 | MS.gene20354:CDS |
| GATGGTATAATAGATTGCAA+AGG | 0.636493 | 5.1:+4701758 | MS.gene20354:CDS |
| ATTGGGCTCAACTTCAACGG+TGG | 0.639681 | 5.1:-4703308 | None:intergenic |
| AGGCTTCCCAACCTACTAGT+GGG | 0.640121 | 5.1:+4703219 | MS.gene20354:CDS |
| ATGTTGGGGTCCACTAAAGG+AGG | 0.649589 | 5.1:+4703199 | MS.gene20354:CDS |
| TTGTGAACCTCATTAGAGCA+CGG | 0.658169 | 5.1:-4703332 | None:intergenic |
| CTTCTGCAAAGAGTTACCCG+TGG | 0.735433 | 5.1:+4701897 | MS.gene20354:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATAATAAATATTGCAT+TGG | + | chr5.1:4702830-4702849 | MS.gene20354:intron | 10.0% |
| !! | TTAAGTTTGATAAAATATAA+GGG | + | chr5.1:4702795-4702814 | MS.gene20354:intron | 10.0% |
| !!! | AAAAATCAATATTGAATTTT+AGG | + | chr5.1:4701691-4701710 | MS.gene20354:intron | 10.0% |
| !! | AATTTAGAAAGATTAAAGAA+AGG | + | chr5.1:4701322-4701341 | MS.gene20354:intron | 15.0% |
| !! | CAATTCAAATGAAAAAAAAT+TGG | - | chr5.1:4702350-4702369 | None:intergenic | 15.0% |
| !! | CTAAATTTAAACTACATATA+TGG | + | chr5.1:4702261-4702280 | MS.gene20354:intron | 15.0% |
| !! | GTTAAGTTTGATAAAATATA+AGG | + | chr5.1:4702794-4702813 | MS.gene20354:intron | 15.0% |
| !!! | AAAATATAAGGGTATAATAA+AGG | + | chr5.1:4702806-4702825 | MS.gene20354:intron | 15.0% |
| !!! | AATAAAAAAGTATACAAACT+TGG | + | chr5.1:4701714-4701733 | MS.gene20354:intron | 15.0% |
| !!! | ATAAAAAAGTATACAAACTT+GGG | + | chr5.1:4701715-4701734 | MS.gene20354:intron | 15.0% |
| !!! | ATTTTGAGAAAATGAAAAAA+TGG | + | chr5.1:4702871-4702890 | MS.gene20354:intron | 15.0% |
| !! | AAACAACTATTATTTAGAGA+CGG | - | chr5.1:4702669-4702688 | None:intergenic | 20.0% |
| !! | CAATTCAAATGATAAAAAGT+TGG | - | chr5.1:4702942-4702961 | None:intergenic | 20.0% |
| !! | GACATGAAAAATATATGATT+AGG | + | chr5.1:4702978-4702997 | MS.gene20354:intron | 20.0% |
| !! | TAAAATCCCCTATTAATTTA+GGG | + | chr5.1:4702486-4702505 | MS.gene20354:intron | 20.0% |
| !! | TATTGAAAAAACTCACAAAT+TGG | - | chr5.1:4702451-4702470 | None:intergenic | 20.0% |
| !! | TTAAAACCCACTATTAATTA+AGG | - | chr5.1:4702549-4702568 | None:intergenic | 20.0% |
| !! | TTAAAATCCCCTATTAATTT+AGG | + | chr5.1:4702485-4702504 | MS.gene20354:intron | 20.0% |
| !! | TTAACAATATGTGTTTGATT+TGG | + | chr5.1:4703055-4703074 | MS.gene20354:intron | 20.0% |
| !!! | TACAATTAATAAGGGTATTT+TGG | - | chr5.1:4702762-4702781 | None:intergenic | 20.0% |
| !!! | TTTTCACCTTAATTAATAGT+GGG | + | chr5.1:4702540-4702559 | MS.gene20354:intron | 20.0% |
| ! | AAAATCCCCTATTAATTTAG+GGG | + | chr5.1:4702487-4702506 | MS.gene20354:intron | 25.0% |
| ! | AAATACCTGAGAGTTATTAA+TGG | - | chr5.1:4701564-4701583 | None:intergenic | 25.0% |
| ! | AACCTACTATCAATCAATTA+AGG | - | chr5.1:4702221-4702240 | None:intergenic | 25.0% |
| ! | AAGTTTGTGCATGATTATTA+AGG | + | chr5.1:4702690-4702709 | MS.gene20354:intron | 25.0% |
| ! | ATGGTATAATAGATTGCAAA+GGG | + | chr5.1:4701759-4701778 | MS.gene20354:CDS | 25.0% |
| ! | ATTTGGTCAACAAATTATCA+AGG | + | chr5.1:4702297-4702316 | MS.gene20354:intron | 25.0% |
| ! | CCACTAACTACAATTAATAA+GGG | - | chr5.1:4702770-4702789 | None:intergenic | 25.0% |
| ! | CGAATATATCCAACAAAAAA+TGG | - | chr5.1:4701858-4701877 | None:intergenic | 25.0% |
| ! | CTAAAACCCCTAAATTAATA+GGG | - | chr5.1:4702496-4702515 | None:intergenic | 25.0% |
| ! | GAGACATGACTAATATAATT+AGG | + | chr5.1:4702384-4702403 | MS.gene20354:intron | 25.0% |
| ! | TAAAAAAGGTAAAGTAAGTG+TGG | - | chr5.1:4702057-4702076 | None:intergenic | 25.0% |
| ! | TAAAACCCCTAAATTAATAG+GGG | - | chr5.1:4702495-4702514 | None:intergenic | 25.0% |
| ! | TAAGGTGAAAATTCATATTG+AGG | - | chr5.1:4702203-4702222 | None:intergenic | 25.0% |
| ! | TATGACAATACTTAGCAATT+TGG | + | chr5.1:4702603-4702622 | MS.gene20354:intron | 25.0% |
| ! | TATTTCGGATCTTGTAAAAA+AGG | - | chr5.1:4702071-4702090 | None:intergenic | 25.0% |
| ! | TCCACTAACTACAATTAATA+AGG | - | chr5.1:4702771-4702790 | None:intergenic | 25.0% |
| ! | TTACTTCCATCAAATGATTA+GGG | - | chr5.1:4701630-4701649 | None:intergenic | 25.0% |
| ! | TTTGGTCAACAAATTATCAA+GGG | + | chr5.1:4702298-4702317 | MS.gene20354:intron | 25.0% |
| !! | ATTTGAAGCATCAAAATTGA+AGG | + | chr5.1:4701430-4701449 | MS.gene20354:CDS | 25.0% |
| !! | GTTTTCACCTTAATTAATAG+TGG | + | chr5.1:4702539-4702558 | MS.gene20354:intron | 25.0% |
| !! | TCTAAAACCCCTAAATTAAT+AGG | - | chr5.1:4702497-4702516 | None:intergenic | 25.0% |
| !! | TGATTTGACTTTCTATTTGT+GGG | + | chr5.1:4701359-4701378 | MS.gene20354:intron | 25.0% |
| !! | TTGATTTGACTTTCTATTTG+TGG | + | chr5.1:4701358-4701377 | MS.gene20354:intron | 25.0% |
| !!! | AAATTGAAGGTTTTGTTCTT+AGG | + | chr5.1:4701443-4701462 | MS.gene20354:CDS | 25.0% |
| !!! | AGTTTTTTCAATACGTACAA+AGG | + | chr5.1:4702458-4702477 | MS.gene20354:intron | 25.0% |
| !!! | ATAATTTGTTGACCAAATTG+CGG | - | chr5.1:4702295-4702314 | None:intergenic | 25.0% |
| !!! | ATATGTGTTTGATTTGGTTT+AGG | + | chr5.1:4703061-4703080 | MS.gene20354:intron | 25.0% |
| !!! | ATTAATCGTGTTGATTTTGA+TGG | + | chr5.1:4702718-4702737 | MS.gene20354:intron | 25.0% |
| AAAAAAAGACATGCTTACCA+CGG | - | chr5.1:4701917-4701936 | None:intergenic | 30.0% | |
| AAAGAGAAAGAAACACATAC+AGG | - | chr5.1:4701298-4701317 | None:intergenic | 30.0% | |
| AAAGATTCCAGAATTCAAGA+AGG | + | chr5.1:4703172-4703191 | MS.gene20354:CDS | 30.0% | |
| AACTATTATTTAGAGACGGA+GGG | - | chr5.1:4702665-4702684 | None:intergenic | 30.0% | |
| AAGAGACAATTATTGTGAGA+CGG | + | chr5.1:4702896-4702915 | MS.gene20354:intron | 30.0% | |
| AATTCAAGAAGGTAGAATGT+TGG | + | chr5.1:4703183-4703202 | MS.gene20354:CDS | 30.0% | |
| ACAAGAAAAAACTCGCAAAT+TGG | - | chr5.1:4702109-4702128 | None:intergenic | 30.0% | |
| AGTTTGAAAGGGTAAATATG+GGG | + | chr5.1:4701998-4702017 | MS.gene20354:intron | 30.0% | |
| ATCTTTGTACATGTTCCTTA+AGG | - | chr5.1:4702133-4702152 | None:intergenic | 30.0% | |
| ATTCAAGAAGGTAGAATGTT+GGG | + | chr5.1:4703184-4703203 | MS.gene20354:CDS | 30.0% | |
| CCCTTATTAATTGTAGTTAG+TGG | + | chr5.1:4702767-4702786 | MS.gene20354:intron | 30.0% | |
| CTAAAACCCCTCAATTAATA+GGG | - | chr5.1:4702166-4702185 | None:intergenic | 30.0% | |
| GAGTTTGAAAGGGTAAATAT+GGG | + | chr5.1:4701997-4702016 | MS.gene20354:intron | 30.0% | |
| GATACTTATGAACCTATTGA+TGG | + | chr5.1:4703356-4703375 | MS.gene20354:CDS | 30.0% | |
| GATGGTATAATAGATTGCAA+AGG | + | chr5.1:4701758-4701777 | MS.gene20354:CDS | 30.0% | |
| GTGAAAATTCATATTGAGGT+GGG | - | chr5.1:4702199-4702218 | None:intergenic | 30.0% | |
| GTTACTTCCATCAAATGATT+AGG | - | chr5.1:4701631-4701650 | None:intergenic | 30.0% | |
| TAAAACCCCCTATTAATTGA+GGG | + | chr5.1:4702156-4702175 | MS.gene20354:intron | 30.0% | |
| TAAAACCCCTCAATTAATAG+GGG | - | chr5.1:4702165-4702184 | None:intergenic | 30.0% | |
| TCAAACCATTAATAACTCTC+AGG | + | chr5.1:4701556-4701575 | MS.gene20354:CDS | 30.0% | |
| TGAGTTTCAATTCCATCAAT+AGG | - | chr5.1:4703371-4703390 | None:intergenic | 30.0% | |
| TGAGTTTGAAAGGGTAAATA+TGG | + | chr5.1:4701996-4702015 | MS.gene20354:intron | 30.0% | |
| TTAAAACCCCCTATTAATTG+AGG | + | chr5.1:4702155-4702174 | MS.gene20354:intron | 30.0% | |
| TTATCATTTGAATTGCACCT+AGG | + | chr5.1:4702947-4702966 | MS.gene20354:intron | 30.0% | |
| TTCATTTGAATTGTACCTAC+CGG | + | chr5.1:4702357-4702376 | MS.gene20354:intron | 30.0% | |
| TTGGTCAACAAATTATCAAG+GGG | + | chr5.1:4702299-4702318 | MS.gene20354:intron | 30.0% | |
| TTTGATGCTTCAAATATAGC+TGG | - | chr5.1:4701425-4701444 | None:intergenic | 30.0% | |
| ! | CACCTTAATTGATTGATAGT+AGG | + | chr5.1:4702216-4702235 | MS.gene20354:intron | 30.0% |
| ! | CTCTTTTTCCAAATAGAAGA+CGG | + | chr5.1:4701245-4701264 | MS.gene20354:CDS | 30.0% |
| ! | TCTAAAACCCCTCAATTAAT+AGG | - | chr5.1:4702167-4702186 | None:intergenic | 30.0% |
| !! | AAACTCACAAATTGGTCTTT+AGG | - | chr5.1:4702443-4702462 | None:intergenic | 30.0% |
| !! | TGATTTGGTTTAGGTATTGA+AGG | + | chr5.1:4703070-4703089 | MS.gene20354:intron | 30.0% |
| !!! | GAGTTTTTTCTTGTACCTTA+AGG | + | chr5.1:4702115-4702134 | MS.gene20354:intron | 30.0% |
| AAAAAAGACATGCTTACCAC+GGG | - | chr5.1:4701916-4701935 | None:intergenic | 35.0% | |
| AAAACCCCCTATTAATTGAG+GGG | + | chr5.1:4702157-4702176 | MS.gene20354:intron | 35.0% | |
| AAAACCCCTCAATTAATAGG+GGG | - | chr5.1:4702164-4702183 | None:intergenic | 35.0% | |
| ACACACTTGATGCATGTAAT+AGG | + | chr5.1:4701966-4701985 | MS.gene20354:intron | 35.0% | |
| ACACTTGATGCATGTAATAG+GGG | + | chr5.1:4701968-4701987 | MS.gene20354:intron | 35.0% | |
| AGGTTTATGTTGAGGTGAAA+AGG | - | chr5.1:4701227-4701246 | None:intergenic | 35.0% | |
| ATTGATGAAGACAAACATCC+AGG | + | chr5.1:4701467-4701486 | MS.gene20354:CDS | 35.0% | |
| CAACTATTATTTAGAGACGG+AGG | - | chr5.1:4702666-4702685 | None:intergenic | 35.0% | |
| CACACTTGATGCATGTAATA+GGG | + | chr5.1:4701967-4701986 | MS.gene20354:intron | 35.0% | |
| CACATACAGGAACAATTGAT+TGG | - | chr5.1:4701285-4701304 | None:intergenic | 35.0% | |
| CACTAATGTGACAATGAACA+TGG | - | chr5.1:4701831-4701850 | None:intergenic | 35.0% | |
| CATGTTCATTGTCACATTAG+TGG | + | chr5.1:4701829-4701848 | MS.gene20354:CDS | 35.0% | |
| CATTCTACCTTCTTGAATTC+TGG | - | chr5.1:4703182-4703201 | None:intergenic | 35.0% | |
| CGTCTTCTATTTGGAAAAAG+AGG | - | chr5.1:4701247-4701266 | None:intergenic | 35.0% | |
| GGAAAAAGAGGTTTATGTTG+AGG | - | chr5.1:4701235-4701254 | None:intergenic | 35.0% | |
| GGTGAAAATTCATATTGAGG+TGG | - | chr5.1:4702200-4702219 | None:intergenic | 35.0% | |
| GTAACAAAACAGAGTTGAAG+AGG | + | chr5.1:4701646-4701665 | MS.gene20354:intron | 35.0% | |
| TATTAGTCATGTCTCATGTC+CGG | - | chr5.1:4702379-4702398 | None:intergenic | 35.0% | |
| TGACTTTCTATTTGTGGGTT+TGG | + | chr5.1:4701364-4701383 | MS.gene20354:intron | 35.0% | |
| TGTAACCTCAAAACTCACTT+TGG | + | chr5.1:4701526-4701545 | MS.gene20354:CDS | 35.0% | |
| TGTCTTCCCTAATCATTTGA+TGG | + | chr5.1:4701621-4701640 | MS.gene20354:intron | 35.0% | |
| TGTGTTAACGTATAAGTCCT+TGG | - | chr5.1:4701500-4701519 | None:intergenic | 35.0% | |
| TTATGTTGAGGTGAAAAGGA+AGG | - | chr5.1:4701223-4701242 | None:intergenic | 35.0% | |
| TTCAAGAAGGTAGAATGTTG+GGG | + | chr5.1:4703185-4703204 | MS.gene20354:CDS | 35.0% | |
| TTCCAAATAGAAGACGGTTA+TGG | + | chr5.1:4701251-4701270 | MS.gene20354:CDS | 35.0% | |
| TTCCATAACCGTCTTCTATT+TGG | - | chr5.1:4701256-4701275 | None:intergenic | 35.0% | |
| TTCCTGTAATTCAGGATAGT+TGG | - | chr5.1:4703126-4703145 | None:intergenic | 35.0% | |
| TTGAACTTAGAAGTGAGCAT+AGG | - | chr5.1:4701199-4701218 | None:intergenic | 35.0% | |
| ! | AATTGCCAAAGTGAGTTTTG+AGG | - | chr5.1:4701534-4701553 | None:intergenic | 35.0% |
| ! | GGGGTATTATGAGTTTGAAA+GGG | + | chr5.1:4701987-4702006 | MS.gene20354:intron | 35.0% |
| ! | GTATTGAAGGCTTTTGTACA+CGG | + | chr5.1:4703083-4703102 | MS.gene20354:CDS | 35.0% |
| ! | TTCTATTTGTGGGTTTGGTT+TGG | + | chr5.1:4701369-4701388 | MS.gene20354:intron | 35.0% |
| !! | AATTACAGGAAGCATTGGTT+TGG | + | chr5.1:4703135-4703154 | MS.gene20354:CDS | 35.0% |
| !! | AGGGGTATTATGAGTTTGAA+AGG | + | chr5.1:4701986-4702005 | MS.gene20354:intron | 35.0% |
| !! | ATTACAGGAAGCATTGGTTT+GGG | + | chr5.1:4703136-4703155 | MS.gene20354:CDS | 35.0% |
| !!! | TTTGGTTTGGATTTTGGAAC+AGG | + | chr5.1:4701382-4701401 | MS.gene20354:intron | 35.0% |
| AACATCCAGGAAATCTTCCA+AGG | + | chr5.1:4701480-4701499 | MS.gene20354:CDS | 40.0% | |
| AACTTAGAAGTGAGCATAGG+AGG | - | chr5.1:4701196-4701215 | None:intergenic | 40.0% | |
| ACCAATGCTTCCTGTAATTC+AGG | - | chr5.1:4703134-4703153 | None:intergenic | 40.0% | |
| ATGGCAATAACTCCGCAATT+TGG | + | chr5.1:4702280-4702299 | MS.gene20354:intron | 40.0% | |
| ATTGCAAAGGGATGAAGTTG+TGG | + | chr5.1:4701771-4701790 | MS.gene20354:CDS | 40.0% | |
| CACCAACTATCCTGAATTAC+AGG | + | chr5.1:4703121-4703140 | MS.gene20354:CDS | 40.0% | |
| GAACAGGTTGCTAGGTTATT+TGG | + | chr5.1:4701398-4701417 | MS.gene20354:intron | 40.0% | |
| GAATTGCACCTAGGAGATAT+GGG | + | chr5.1:4702956-4702975 | MS.gene20354:intron | 40.0% | |
| GACAATTATTGTGAGACGGA+TGG | + | chr5.1:4702900-4702919 | MS.gene20354:intron | 40.0% | |
| GGAATTCAATTGCAGTTGCA+GGG | + | chr5.1:4701736-4701755 | MS.gene20354:intron | 40.0% | |
| GTTCATTGTCACATTAGTGG+TGG | + | chr5.1:4701832-4701851 | MS.gene20354:CDS | 40.0% | |
| TAAGTCCTTGGAAGATTTCC+TGG | - | chr5.1:4701488-4701507 | None:intergenic | 40.0% | |
| TCGCTAGGACAACGATATTT+CGG | - | chr5.1:4702086-4702105 | None:intergenic | 40.0% | |
| TGAATTGCACCTAGGAGATA+TGG | + | chr5.1:4702955-4702974 | MS.gene20354:intron | 40.0% | |
| TTGTGAACCTCATTAGAGCA+CGG | - | chr5.1:4703335-4703354 | None:intergenic | 40.0% | |
| TTTCATGTCCCATATCTCCT+AGG | - | chr5.1:4702967-4702986 | None:intergenic | 40.0% | |
| ! | CAATTTTCTTGACATGGCTG+AGG | - | chr5.1:4703275-4703294 | None:intergenic | 40.0% |
| ! | CACTCGCAATTTTCTTGACA+TGG | - | chr5.1:4703281-4703300 | None:intergenic | 40.0% |
| ! | TCCTGAATTACAGGAAGCAT+TGG | + | chr5.1:4703130-4703149 | MS.gene20354:CDS | 40.0% |
| !! | CAAATTTTGGTGGTCCCTTT+GGG | - | chr5.1:4703246-4703265 | None:intergenic | 40.0% |
| !!! | TAGTGGTGGCCATTTTTTGT+TGG | + | chr5.1:4701846-4701865 | MS.gene20354:CDS | 40.0% |
| !!! | TGTGGGTTTGGTTTGGATTT+TGG | + | chr5.1:4701376-4701395 | MS.gene20354:intron | 40.0% |
| AAACTCGCAAATTGGTCGCT+AGG | - | chr5.1:4702101-4702120 | None:intergenic | 45.0% | |
| AGAATGTTGGGGTCCACTAA+AGG | + | chr5.1:4703196-4703215 | MS.gene20354:CDS | 45.0% | |
| CCAAAGGGACCACCAAAATT+TGG | + | chr5.1:4703244-4703263 | MS.gene20354:CDS | 45.0% | |
| GGGAATTCAATTGCAGTTGC+AGG | + | chr5.1:4701735-4701754 | MS.gene20354:intron | 45.0% | |
| TTAGAAGTGAGCATAGGAGG+AGG | - | chr5.1:4701193-4701212 | None:intergenic | 45.0% | |
| TTCAATTGCAGTTGCAGGGA+TGG | + | chr5.1:4701740-4701759 | MS.gene20354:intron | 45.0% | |
| TTCTTGACATGGCTGAGGTA+GGG | - | chr5.1:4703270-4703289 | None:intergenic | 45.0% | |
| TTTCTTGACATGGCTGAGGT+AGG | - | chr5.1:4703271-4703290 | None:intergenic | 45.0% | |
| ! | AAGGCTTTTGTACACGGTGA+CGG | + | chr5.1:4703089-4703108 | MS.gene20354:CDS | 45.0% |
| !! | CCAAATTTTGGTGGTCCCTT+TGG | - | chr5.1:4703247-4703266 | None:intergenic | 45.0% |
| !!! | GGATTTTGGAACAGGTTGCT+AGG | + | chr5.1:4701390-4701409 | MS.gene20354:intron | 45.0% |
| AACCTACTAGTGGGACCCAA+AGG | + | chr5.1:4703228-4703247 | MS.gene20354:CDS | 50.0% | |
| ACCTACTAGTGGGACCCAAA+GGG | + | chr5.1:4703229-4703248 | MS.gene20354:CDS | 50.0% | |
| ACCTCATTAGAGCACGGCAT+TGG | - | chr5.1:4703329-4703348 | None:intergenic | 50.0% | |
| AGGCTTCCCAACCTACTAGT+GGG | + | chr5.1:4703219-4703238 | MS.gene20354:CDS | 50.0% | |
| AGTCATGTCTCATGTCCGGT+AGG | - | chr5.1:4702375-4702394 | None:intergenic | 50.0% | |
| ATGTTGGGGTCCACTAAAGG+AGG | + | chr5.1:4703199-4703218 | MS.gene20354:CDS | 50.0% | |
| ATTGGGCTCAACTTCAACGG+TGG | - | chr5.1:4703311-4703330 | None:intergenic | 50.0% | |
| CCTCATTAGAGCACGGCATT+GGG | - | chr5.1:4703328-4703347 | None:intergenic | 50.0% | |
| CTTCTGCAAAGAGTTACCCG+TGG | + | chr5.1:4701897-4701916 | MS.gene20354:CDS | 50.0% | |
| TTGGGTCCCACTAGTAGGTT+GGG | - | chr5.1:4703228-4703247 | None:intergenic | 50.0% | |
| TTTGGGTCCCACTAGTAGGT+TGG | - | chr5.1:4703229-4703248 | None:intergenic | 50.0% | |
| ! | GAGGTAGGGCCAAATTTTGG+TGG | - | chr5.1:4703256-4703275 | None:intergenic | 50.0% |
| ! | GCTGAGGTAGGGCCAAATTT+TGG | - | chr5.1:4703259-4703278 | None:intergenic | 50.0% |
| ! | GGCATTGGGCTCAACTTCAA+CGG | - | chr5.1:4703314-4703333 | None:intergenic | 50.0% |
| AGTTGTGGCGCAGTGGAAGA+AGG | + | chr5.1:4701786-4701805 | MS.gene20354:CDS | 55.0% | |
| CCCAATGCCGTGCTCTAATG+AGG | + | chr5.1:4703325-4703344 | MS.gene20354:CDS | 55.0% | |
| GAGGCTTCCCAACCTACTAG+TGG | + | chr5.1:4703218-4703237 | MS.gene20354:CDS | 55.0% | |
| GCGCAGTGGAAGAAGGTGAA+GGG | + | chr5.1:4701793-4701812 | MS.gene20354:CDS | 55.0% | |
| GGTTGGGAAGCCTCCTTTAG+TGG | - | chr5.1:4703212-4703231 | None:intergenic | 55.0% | |
| TCCCTTTGGGTCCCACTAGT+AGG | - | chr5.1:4703233-4703252 | None:intergenic | 55.0% | |
| GAGCATAGGAGGAGGAGCAG+TGG | - | chr5.1:4701185-4701204 | None:intergenic | 60.0% | |
| GGCGCAGTGGAAGAAGGTGA+AGG | + | chr5.1:4701792-4701811 | MS.gene20354:CDS | 60.0% | |
| GGGATGAAGTTGTGGCGCAG+TGG | + | chr5.1:4701779-4701798 | MS.gene20354:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 4701169 | 4703403 | 4701169 | ID=MS.gene20354 |
| chr5.1 | mRNA | 4701169 | 4703403 | 4701169 | ID=MS.gene20354.t1;Parent=MS.gene20354 |
| chr5.1 | exon | 4701169 | 4701297 | 4701169 | ID=MS.gene20354.t1.exon1;Parent=MS.gene20354.t1 |
| chr5.1 | CDS | 4701169 | 4701297 | 4701169 | ID=cds.MS.gene20354.t1;Parent=MS.gene20354.t1 |
| chr5.1 | exon | 4701404 | 4701577 | 4701404 | ID=MS.gene20354.t1.exon2;Parent=MS.gene20354.t1 |
| chr5.1 | CDS | 4701404 | 4701577 | 4701404 | ID=cds.MS.gene20354.t1;Parent=MS.gene20354.t1 |
| chr5.1 | exon | 4701751 | 4701918 | 4701751 | ID=MS.gene20354.t1.exon3;Parent=MS.gene20354.t1 |
| chr5.1 | CDS | 4701751 | 4701918 | 4701751 | ID=cds.MS.gene20354.t1;Parent=MS.gene20354.t1 |
| chr5.1 | exon | 4703083 | 4703403 | 4703083 | ID=MS.gene20354.t1.exon4;Parent=MS.gene20354.t1 |
| chr5.1 | CDS | 4703083 | 4703403 | 4703083 | ID=cds.MS.gene20354.t1;Parent=MS.gene20354.t1 |
| Gene Sequence |
| Protein sequence |
