Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20766.t1 | KEH43214.1 | 96.3 | 164 | 4 | 1 | 5 | 168 | 31 | 192 | 5.00E-74 | 287.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20766.t1 | P49693 | 87.9 | 165 | 18 | 1 | 5 | 169 | 31 | 193 | 2.2e-70 | 266.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20766.t1 | A0A072VMH3 | 96.3 | 164 | 4 | 1 | 5 | 168 | 31 | 192 | 3.6e-74 | 287.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene20766 | 0.862392 | 5.24E-64 | -1.69E-46 |
| MS.gene050791 | MS.gene20766 | 0.815319 | 9.83E-52 | -1.69E-46 |
| MS.gene051904 | MS.gene20766 | 0.849519 | 3.07E-60 | -1.69E-46 |
| MS.gene052664 | MS.gene20766 | 0.860508 | 1.97E-63 | -1.69E-46 |
| MS.gene053224 | MS.gene20766 | 0.859661 | 3.54E-63 | -1.69E-46 |
| MS.gene057272 | MS.gene20766 | 0.834107 | 3.63E-56 | -1.69E-46 |
| MS.gene057641 | MS.gene20766 | 0.828836 | 7.20E-55 | -1.69E-46 |
| MS.gene057643 | MS.gene20766 | 0.855194 | 7.43E-62 | -1.69E-46 |
| MS.gene060432 | MS.gene20766 | 0.837024 | 6.63E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20766.t1 | MTR_7g108955 | 89.305 | 187 | 16 | 2 | 5 | 189 | 31 | 215 | 3.62e-102 | 293 |
| MS.gene20766.t1 | MTR_1g087910 | 95.135 | 185 | 7 | 1 | 5 | 189 | 31 | 213 | 1.20e-98 | 284 |
| MS.gene20766.t1 | MTR_7g108955 | 89.444 | 180 | 15 | 2 | 5 | 182 | 31 | 208 | 2.55e-98 | 283 |
| MS.gene20766.t1 | MTR_1g087910 | 96.273 | 161 | 4 | 1 | 5 | 165 | 31 | 189 | 6.35e-96 | 277 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20766.t1 | AT3G16780 | 81.111 | 180 | 30 | 2 | 5 | 182 | 31 | 208 | 6.28e-98 | 282 |
| MS.gene20766.t1 | AT4G02230 | 83.243 | 185 | 24 | 2 | 5 | 189 | 31 | 208 | 5.01e-89 | 260 |
| MS.gene20766.t1 | AT1G02780 | 89.873 | 158 | 14 | 1 | 5 | 162 | 31 | 186 | 4.96e-88 | 258 |
| MS.gene20766.t1 | AT4G16030 | 42.384 | 151 | 32 | 9 | 33 | 171 | 6 | 113 | 3.51e-15 | 68.6 |
Find 65 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGATACTTGATTTACTTCT+TGG | 0.183729 | 1.2:+65870847 | None:intergenic |
| CCTCCTCATCCAAAGGATTT+TGG | 0.205932 | 1.2:+65871404 | None:intergenic |
| TACTTCTTGGATTTCTTTGA+TGG | 0.223836 | 1.2:+65870860 | None:intergenic |
| TAACCAACTTCCTGATGTTT+TGG | 0.238015 | 1.2:+65872010 | None:intergenic |
| GCTGTTGCAGCTGGTGTGGC+TGG | 0.339934 | 1.2:+65870974 | None:intergenic |
| CTCTCTAGCCTTCTCAGCCT+TGG | 0.342124 | 1.2:+65871242 | None:intergenic |
| GGCCAAGAGGGCGAAGAATA+AGG | 0.353398 | 1.2:-65871196 | MS.gene20766:CDS |
| GTGGCTGGTGCTGCAGCTGC+AGG | 0.365911 | 1.2:+65870989 | None:intergenic |
| CAAGAACAAGAGAGTCCTTA+TGG | 0.366020 | 1.2:-65871280 | MS.gene20766:CDS |
| ATTAAAATGCCCAATTTACT+TGG | 0.377217 | 1.2:-65872197 | MS.gene20766:CDS |
| GACTGGGTTGCTGTTGCAGC+TGG | 0.390238 | 1.2:+65870965 | None:intergenic |
| AAGGGACGTCATTCTGGATA+TGG | 0.390520 | 1.2:-65871910 | MS.gene20766:intron |
| AAGAGGAAGGGACGTCATTC+TGG | 0.393970 | 1.2:-65871916 | MS.gene20766:CDS |
| GGCTCCCCACCAAAATCCTT+TGG | 0.400346 | 1.2:-65871413 | MS.gene20766:CDS |
| AGTGAATCTTAGTTGGCTTC+CGG | 0.400791 | 1.2:+65871971 | None:intergenic |
| AGCCTTATTCTTCGCCCTCT+TGG | 0.400876 | 1.2:+65871194 | None:intergenic |
| TGTCAATCTTCTTTGCCTCT+CGG | 0.425253 | 1.2:+65871349 | None:intergenic |
| TTAAGGATGGCTTCATTATC+CGG | 0.428777 | 1.2:-65871990 | MS.gene20766:CDS |
| TCGTTGCAGGCCAAAACATC+AGG | 0.437194 | 1.2:-65872020 | MS.gene20766:intron |
| GTACCCTAATATGAACTTAG+TGG | 0.458483 | 1.2:-65872222 | None:intergenic |
| GTTTAGATACTTACTGGGAC+TGG | 0.459001 | 1.2:+65870948 | None:intergenic |
| GCTGCAGGAACCTTCTCTCC+TGG | 0.459743 | 1.2:+65871004 | None:intergenic |
| AAACATCAGGAAGTTGGTTA+AGG | 0.466451 | 1.2:-65872007 | MS.gene20766:CDS |
| TTGATAAATAGGTAAAAGAA+AGG | 0.468156 | 1.2:-65871451 | MS.gene20766:intron |
| GACATTATCTGATCAGTTTG+AGG | 0.469564 | 1.2:-65871217 | MS.gene20766:CDS |
| GGGCGAAGAATAAGGCTAGC+AGG | 0.473984 | 1.2:-65871188 | MS.gene20766:CDS |
| TGAGGAGGATGCGTGTCCTC+AGG | 0.478520 | 1.2:-65871389 | MS.gene20766:CDS |
| GAGCGGGAGTGAATCTTAGT+TGG | 0.479570 | 1.2:+65871964 | None:intergenic |
| TTCACTCCCGCTCCCGTGCT+AGG | 0.486394 | 1.2:-65871954 | MS.gene20766:CDS |
| TTAAAATGCCCAATTTACTT+GGG | 0.486778 | 1.2:-65872196 | MS.gene20766:CDS |
| CTCCTTCATACGCCTAGCAC+GGG | 0.507928 | 1.2:+65871942 | None:intergenic |
| GGTTGCTGTTGCAGCTGGTG+TGG | 0.512452 | 1.2:+65870970 | None:intergenic |
| AGAATGACGTCCCTTCCTCT+TGG | 0.519292 | 1.2:+65871918 | None:intergenic |
| CTCCCGTGCTAGGCGTATGA+AGG | 0.520929 | 1.2:-65871944 | MS.gene20766:CDS |
| CCTCCTTCATACGCCTAGCA+CGG | 0.532368 | 1.2:+65871941 | None:intergenic |
| ACTTGTGAATACTCTCCATA+AGG | 0.533671 | 1.2:+65871265 | None:intergenic |
| AGGCCAAAACATCAGGAAGT+TGG | 0.540880 | 1.2:-65872013 | MS.gene20766:CDS |
| ATCAGGAAGTTGGTTAAGGA+TGG | 0.541752 | 1.2:-65872003 | MS.gene20766:CDS |
| TCACAAGTCCAAGGCTGAGA+AGG | 0.542917 | 1.2:-65871250 | MS.gene20766:CDS |
| TTTAGATACTTACTGGGACT+GGG | 0.545217 | 1.2:+65870949 | None:intergenic |
| CATACGCCTAGCACGGGAGC+GGG | 0.545913 | 1.2:+65871948 | None:intergenic |
| CCACCAAAATCCTTTGGATG+AGG | 0.555880 | 1.2:-65871407 | MS.gene20766:CDS |
| TATGAAGGAGGCCAAGAGGA+AGG | 0.560584 | 1.2:-65871929 | MS.gene20766:CDS |
| TAAAATGCCCAATTTACTTG+GGG | 0.562609 | 1.2:-65872195 | MS.gene20766:CDS |
| TGATATGTACATGAAGGTGA+AGG | 0.563752 | 1.2:-65871313 | MS.gene20766:CDS |
| TGTATAGGGTCCAGGAGAGA+AGG | 0.563890 | 1.2:-65871014 | MS.gene20766:intron |
| TGATAAATAGGTAAAAGAAA+GGG | 0.567052 | 1.2:-65871450 | MS.gene20766:intron |
| TCATACGCCTAGCACGGGAG+CGG | 0.568186 | 1.2:+65871947 | None:intergenic |
| CCAAAATCCTTTGGATGAGG+AGG | 0.569919 | 1.2:-65871404 | MS.gene20766:CDS |
| GGCGAAGAATAAGGCTAGCA+GGG | 0.575881 | 1.2:-65871187 | MS.gene20766:CDS |
| AAAATGCCCAATTTACTTGG+GGG | 0.579693 | 1.2:-65872194 | MS.gene20766:intron |
| AGAATAAGGCTAGCAGGGAA+AGG | 0.589605 | 1.2:-65871182 | MS.gene20766:CDS |
| TGATCAGTTTGAGGCCAAGA+GGG | 0.598337 | 1.2:-65871208 | MS.gene20766:CDS |
| CCGTGCTAGGCGTATGAAGG+AGG | 0.607212 | 1.2:-65871941 | MS.gene20766:CDS |
| TAAAAGAAAGGGTACAAGAG+AGG | 0.608223 | 1.2:-65871439 | MS.gene20766:CDS |
| CACGCATCCTCCTCATCCAA+AGG | 0.610691 | 1.2:+65871397 | None:intergenic |
| GAAAGGGTACAAGAGAGGCT+AGG | 0.611551 | 1.2:-65871434 | MS.gene20766:CDS |
| GATATGTACATGAAGGTGAA+GGG | 0.614061 | 1.2:-65871312 | MS.gene20766:CDS |
| ATGAAGGAGGCCAAGAGGAA+GGG | 0.617125 | 1.2:-65871928 | MS.gene20766:CDS |
| GGAGAGTATTCACAAGTCCA+AGG | 0.617146 | 1.2:-65871259 | MS.gene20766:CDS |
| CTGATCAGTTTGAGGCCAAG+AGG | 0.627289 | 1.2:-65871209 | MS.gene20766:CDS |
| GGCGTATGAAGGAGGCCAAG+AGG | 0.634053 | 1.2:-65871933 | MS.gene20766:CDS |
| GTATCATGATATGTACATGA+AGG | 0.691105 | 1.2:-65871319 | MS.gene20766:CDS |
| TTTGCTTCGCAAGTACCGAG+AGG | 0.708306 | 1.2:-65871364 | MS.gene20766:CDS |
| ACTTGCGAAGCAAACGCCTG+AGG | 0.708807 | 1.2:+65871373 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCATATTAAAACTATCA+AGG | + | chr1.2:65871204-65871223 | None:intergenic | 15.0% |
| !! | CATATATTATCAAAACATTA+TGG | + | chr1.2:65871955-65871974 | None:intergenic | 15.0% |
| !!! | ATAGTTTTAATATGAATTGA+AGG | - | chr1.2:65871206-65871225 | MS.gene20766:CDS | 15.0% |
| !! | ATTTGCACTTATTGATAAAT+AGG | - | chr1.2:65871609-65871628 | MS.gene20766:intron | 20.0% |
| !! | TGATAAATAGGTAAAAGAAA+GGG | - | chr1.2:65871621-65871640 | MS.gene20766:intron | 20.0% |
| !! | TGATAATATATGTAGTGAAT+TGG | - | chr1.2:65871963-65871982 | MS.gene20766:CDS | 20.0% |
| !! | TTCATAACAAAAATGAGTTA+AGG | + | chr1.2:65870934-65870953 | None:intergenic | 20.0% |
| !! | TTGATAAATAGGTAAAAGAA+AGG | - | chr1.2:65871620-65871639 | MS.gene20766:intron | 20.0% |
| !!! | TAGTTTTTTTTGTTATGTTG+TGG | - | chr1.2:65872163-65872182 | MS.gene20766:intron | 20.0% |
| ! | ATTAAAATGCCCAATTTACT+TGG | - | chr1.2:65870874-65870893 | MS.gene20766:intron | 25.0% |
| ! | TAGAATACATTCACTCTATT+TGG | - | chr1.2:65871305-65871324 | MS.gene20766:CDS | 25.0% |
| ! | TGATTGTGTTAATTGTTGAT+TGG | - | chr1.2:65870961-65870980 | MS.gene20766:intron | 25.0% |
| ! | TTAAAATGCCCAATTTACTT+GGG | - | chr1.2:65870875-65870894 | MS.gene20766:intron | 25.0% |
| !! | AAAGTGTTTAGATACTTACT+GGG | + | chr1.2:65872131-65872150 | None:intergenic | 25.0% |
| !! | ATCTAAACACTTTTGTTACT+TGG | - | chr1.2:65872138-65872157 | MS.gene20766:intron | 25.0% |
| !!! | AAAAGTGTTTAGATACTTAC+TGG | + | chr1.2:65872132-65872151 | None:intergenic | 25.0% |
| GTATCATGATATGTACATGA+AGG | - | chr1.2:65871752-65871771 | MS.gene20766:intron | 30.0% | |
| TAAAATGCCCAATTTACTTG+GGG | - | chr1.2:65870876-65870895 | MS.gene20766:intron | 30.0% | |
| TACTTCTTGGATTTCTTTGA+TGG | + | chr1.2:65872214-65872233 | None:intergenic | 30.0% | |
| TCAGTTGTGTAGAATATTGT+AGG | - | chr1.2:65871476-65871495 | MS.gene20766:intron | 30.0% | |
| TGTATTTCACTGATCATATG+TGG | - | chr1.2:65870995-65871014 | MS.gene20766:CDS | 30.0% | |
| ! | TGGACCCTATACATTTTAAA+AGG | + | chr1.2:65872050-65872069 | None:intergenic | 30.0% |
| !! | CCTATACATTTTAAAAGGCA+GGG | + | chr1.2:65872045-65872064 | None:intergenic | 30.0% |
| !!! | CCTGCCTTTTAAAATGTATA+GGG | - | chr1.2:65872043-65872062 | MS.gene20766:intron | 30.0% |
| !!! | TTTTAAAATGTATAGGGTCC+AGG | - | chr1.2:65872049-65872068 | MS.gene20766:intron | 30.0% |
| AAAATGCCCAATTTACTTGG+GGG | - | chr1.2:65870877-65870896 | MS.gene20766:intron | 35.0% | |
| ACTTGTGAATACTCTCCATA+AGG | + | chr1.2:65871809-65871828 | None:intergenic | 35.0% | |
| ATTTCACTGATCATATGTGG+TGG | - | chr1.2:65870998-65871017 | MS.gene20766:CDS | 35.0% | |
| CCATAATAATACTCGTGTGA+TGG | + | chr1.2:65871423-65871442 | None:intergenic | 35.0% | |
| CCATCACACGAGTATTATTA+TGG | - | chr1.2:65871420-65871439 | MS.gene20766:CDS | 35.0% | |
| GACATTATCTGATCAGTTTG+AGG | - | chr1.2:65871854-65871873 | MS.gene20766:intron | 35.0% | |
| GATATGTACATGAAGGTGAA+GGG | - | chr1.2:65871759-65871778 | MS.gene20766:intron | 35.0% | |
| TGATATGTACATGAAGGTGA+AGG | - | chr1.2:65871758-65871777 | MS.gene20766:intron | 35.0% | |
| TTAAGGATGGCTTCATTATC+CGG | - | chr1.2:65871081-65871100 | MS.gene20766:intron | 35.0% | |
| TTTAGATACTTACTGGGACT+GGG | + | chr1.2:65872125-65872144 | None:intergenic | 35.0% | |
| TTTCACTGATCATATGTGGT+GGG | - | chr1.2:65870999-65871018 | MS.gene20766:CDS | 35.0% | |
| ! | AAACATCAGGAAGTTGGTTA+AGG | - | chr1.2:65871064-65871083 | MS.gene20766:intron | 35.0% |
| ! | ACTTCACACGAGTATTTCTA+TGG | - | chr1.2:65871541-65871560 | MS.gene20766:intron | 35.0% |
| ! | TAAAAGAAAGGGTACAAGAG+AGG | - | chr1.2:65871632-65871651 | MS.gene20766:intron | 35.0% |
| ! | TAACCAACTTCCTGATGTTT+TGG | + | chr1.2:65871064-65871083 | None:intergenic | 35.0% |
| !! | CCCTATACATTTTAAAAGGC+AGG | + | chr1.2:65872046-65872065 | None:intergenic | 35.0% |
| !! | TTTTAAAAGGCAGGGTGATA+TGG | + | chr1.2:65872037-65872056 | None:intergenic | 35.0% |
| !!! | CCCTGCCTTTTAAAATGTAT+AGG | - | chr1.2:65872042-65872061 | MS.gene20766:intron | 35.0% |
| ATGAGAACCCCCAAGTAAAT+TGG | + | chr1.2:65870887-65870906 | None:intergenic | 40.0% | |
| CAAGAACAAGAGAGTCCTTA+TGG | - | chr1.2:65871791-65871810 | MS.gene20766:intron | 40.0% | |
| CCAACCAAACCATTTATCAC+AGG | + | chr1.2:65871027-65871046 | None:intergenic | 40.0% | |
| GTTTAGATACTTACTGGGAC+TGG | + | chr1.2:65872126-65872145 | None:intergenic | 40.0% | |
| TCTATGGTACTTGCACTATC+AGG | - | chr1.2:65871557-65871576 | MS.gene20766:intron | 40.0% | |
| TGAGAACCCCCAAGTAAATT+GGG | + | chr1.2:65870886-65870905 | None:intergenic | 40.0% | |
| TGTCAATCTTCTTTGCCTCT+CGG | + | chr1.2:65871725-65871744 | None:intergenic | 40.0% | |
| ! | AGTGAATCTTAGTTGGCTTC+CGG | + | chr1.2:65871103-65871122 | None:intergenic | 40.0% |
| ! | ATCAGGAAGTTGGTTAAGGA+TGG | - | chr1.2:65871068-65871087 | MS.gene20766:intron | 40.0% |
| ! | TCAGTTGTGCGAAGTATTCT+AGG | - | chr1.2:65871345-65871364 | MS.gene20766:CDS | 40.0% |
| !! | CCTGTGATAAATGGTTTGGT+TGG | - | chr1.2:65871024-65871043 | MS.gene20766:intron | 40.0% |
| !! | CTCATCCAAAGGATTTTGGT+GGG | + | chr1.2:65871666-65871685 | None:intergenic | 40.0% |
| !! | TCATCCAAAGGATTTTGGTG+GGG | + | chr1.2:65871665-65871684 | None:intergenic | 40.0% |
| AAGGGACGTCATTCTGGATA+TGG | - | chr1.2:65871161-65871180 | MS.gene20766:CDS | 45.0% | |
| AGAATAAGGCTAGCAGGGAA+AGG | - | chr1.2:65871889-65871908 | MS.gene20766:intron | 45.0% | |
| AGGCCAAAACATCAGGAAGT+TGG | - | chr1.2:65871058-65871077 | MS.gene20766:intron | 45.0% | |
| CCAAAATCCTTTGGATGAGG+AGG | - | chr1.2:65871667-65871686 | MS.gene20766:intron | 45.0% | |
| CCACCAAAATCCTTTGGATG+AGG | - | chr1.2:65871664-65871683 | MS.gene20766:intron | 45.0% | |
| GGAGCCTGTGATAAATGGTT+TGG | - | chr1.2:65871020-65871039 | MS.gene20766:intron | 45.0% | |
| GGTACTTGCACTATCAGGAT+AGG | - | chr1.2:65871562-65871581 | MS.gene20766:intron | 45.0% | |
| ! | CCTCATCCAAAGGATTTTGG+TGG | + | chr1.2:65871667-65871686 | None:intergenic | 45.0% |
| ! | CCTCCTCATCCAAAGGATTT+TGG | + | chr1.2:65871670-65871689 | None:intergenic | 45.0% |
| ! | TGATCAGTTTGAGGCCAAGA+GGG | - | chr1.2:65871863-65871882 | MS.gene20766:intron | 45.0% |
| !! | GGAGAGTATTCACAAGTCCA+AGG | - | chr1.2:65871812-65871831 | MS.gene20766:intron | 45.0% |
| !! | TTTGGTTGGTTTCTCGTTGC+AGG | - | chr1.2:65871038-65871057 | MS.gene20766:intron | 45.0% |
| AAGAGGAAGGGACGTCATTC+TGG | - | chr1.2:65871155-65871174 | MS.gene20766:CDS | 50.0% | |
| AGAATGACGTCCCTTCCTCT+TGG | + | chr1.2:65871156-65871175 | None:intergenic | 50.0% | |
| ATGAAGGAGGCCAAGAGGAA+GGG | - | chr1.2:65871143-65871162 | MS.gene20766:intron | 50.0% | |
| GAGCGGGAGTGAATCTTAGT+TGG | + | chr1.2:65871110-65871129 | None:intergenic | 50.0% | |
| GGCGAAGAATAAGGCTAGCA+GGG | - | chr1.2:65871884-65871903 | MS.gene20766:intron | 50.0% | |
| TATGAAGGAGGCCAAGAGGA+AGG | - | chr1.2:65871142-65871161 | MS.gene20766:intron | 50.0% | |
| TCACAAGTCCAAGGCTGAGA+AGG | - | chr1.2:65871821-65871840 | MS.gene20766:intron | 50.0% | |
| TCGTTGCAGGCCAAAACATC+AGG | - | chr1.2:65871051-65871070 | MS.gene20766:intron | 50.0% | |
| TGGTGGGAGCCTGTGATAAA+TGG | - | chr1.2:65871015-65871034 | MS.gene20766:intron | 50.0% | |
| TGTATAGGGTCCAGGAGAGA+AGG | - | chr1.2:65872057-65872076 | MS.gene20766:intron | 50.0% | |
| ! | CTGATCAGTTTGAGGCCAAG+AGG | - | chr1.2:65871862-65871881 | MS.gene20766:intron | 50.0% |
| ! | GAAAGGGTACAAGAGAGGCT+AGG | - | chr1.2:65871637-65871656 | MS.gene20766:intron | 50.0% |
| !! | AGCCTTATTCTTCGCCCTCT+TGG | + | chr1.2:65871880-65871899 | None:intergenic | 50.0% |
| !! | TTTGCTTCGCAAGTACCGAG+AGG | - | chr1.2:65871707-65871726 | MS.gene20766:intron | 50.0% |
| ACTTGCGAAGCAAACGCCTG+AGG | + | chr1.2:65871701-65871720 | None:intergenic | 55.0% | |
| CACGCATCCTCCTCATCCAA+AGG | + | chr1.2:65871677-65871696 | None:intergenic | 55.0% | |
| CCTCCTTCATACGCCTAGCA+CGG | + | chr1.2:65871133-65871152 | None:intergenic | 55.0% | |
| CTCCTTCATACGCCTAGCAC+GGG | + | chr1.2:65871132-65871151 | None:intergenic | 55.0% | |
| GGCCAAGAGGGCGAAGAATA+AGG | - | chr1.2:65871875-65871894 | MS.gene20766:intron | 55.0% | |
| GGCTCCCCACCAAAATCCTT+TGG | - | chr1.2:65871658-65871677 | MS.gene20766:intron | 55.0% | |
| GGGCGAAGAATAAGGCTAGC+AGG | - | chr1.2:65871883-65871902 | MS.gene20766:intron | 55.0% | |
| ! | CTCTCTAGCCTTCTCAGCCT+TGG | + | chr1.2:65871832-65871851 | None:intergenic | 55.0% |
| CCGTGCTAGGCGTATGAAGG+AGG | - | chr1.2:65871130-65871149 | MS.gene20766:intron | 60.0% | |
| CTCCCGTGCTAGGCGTATGA+AGG | - | chr1.2:65871127-65871146 | MS.gene20766:intron | 60.0% | |
| GCTGCAGGAACCTTCTCTCC+TGG | + | chr1.2:65872070-65872089 | None:intergenic | 60.0% | |
| GGCGTATGAAGGAGGCCAAG+AGG | - | chr1.2:65871138-65871157 | MS.gene20766:intron | 60.0% | |
| TCATACGCCTAGCACGGGAG+CGG | + | chr1.2:65871127-65871146 | None:intergenic | 60.0% | |
| TGAGGAGGATGCGTGTCCTC+AGG | - | chr1.2:65871682-65871701 | MS.gene20766:intron | 60.0% | |
| ! | GACTGGGTTGCTGTTGCAGC+TGG | + | chr1.2:65872109-65872128 | None:intergenic | 60.0% |
| ! | GGTTGCTGTTGCAGCTGGTG+TGG | + | chr1.2:65872104-65872123 | None:intergenic | 60.0% |
| CATACGCCTAGCACGGGAGC+GGG | + | chr1.2:65871126-65871145 | None:intergenic | 65.0% | |
| GCTGTTGCAGCTGGTGTGGC+TGG | + | chr1.2:65872100-65872119 | None:intergenic | 65.0% | |
| TTCACTCCCGCTCCCGTGCT+AGG | - | chr1.2:65871117-65871136 | MS.gene20766:intron | 65.0% | |
| !! | GTGGCTGGTGCTGCAGCTGC+AGG | + | chr1.2:65872085-65872104 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 65870859 | 65872234 | 65870859 | ID=MS.gene20766 |
| chr1.2 | mRNA | 65870859 | 65872234 | 65870859 | ID=MS.gene20766.t1;Parent=MS.gene20766 |
| chr1.2 | exon | 65872195 | 65872234 | 65872195 | ID=MS.gene20766.t1.exon1;Parent=MS.gene20766.t1 |
| chr1.2 | CDS | 65872195 | 65872234 | 65872195 | ID=cds.MS.gene20766.t1;Parent=MS.gene20766.t1 |
| chr1.2 | exon | 65871911 | 65872033 | 65871911 | ID=MS.gene20766.t1.exon2;Parent=MS.gene20766.t1 |
| chr1.2 | CDS | 65871911 | 65872033 | 65871911 | ID=cds.MS.gene20766.t1;Parent=MS.gene20766.t1 |
| chr1.2 | exon | 65871149 | 65871462 | 65871149 | ID=MS.gene20766.t1.exon3;Parent=MS.gene20766.t1 |
| chr1.2 | CDS | 65871149 | 65871462 | 65871149 | ID=cds.MS.gene20766.t1;Parent=MS.gene20766.t1 |
| chr1.2 | exon | 65870962 | 65871029 | 65870962 | ID=MS.gene20766.t1.exon4;Parent=MS.gene20766.t1 |
| chr1.2 | CDS | 65870962 | 65871029 | 65870962 | ID=cds.MS.gene20766.t1;Parent=MS.gene20766.t1 |
| chr1.2 | exon | 65870859 | 65870883 | 65870859 | ID=MS.gene20766.t1.exon5;Parent=MS.gene20766.t1 |
| chr1.2 | CDS | 65870859 | 65870883 | 65870859 | ID=cds.MS.gene20766.t1;Parent=MS.gene20766.t1 |
| Gene Sequence |
| Protein sequence |