Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22748.t1 | XP_004494871.1 | 67.5 | 274 | 58 | 7 | 1 | 253 | 1 | 264 | 4.50E-86 | 327.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22748.t1 | P19684 | 34.9 | 175 | 110 | 4 | 71 | 242 | 115 | 288 | 2.4e-19 | 97.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22748.t1 | A0A1S2XWT8 | 67.5 | 274 | 58 | 7 | 1 | 253 | 1 | 264 | 3.2e-86 | 327.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052326 | MS.gene22748 | 0.807341 | 5.30E-50 | -1.69E-46 |
| MS.gene055277 | MS.gene22748 | 0.801153 | 1.03E-48 | -1.69E-46 |
| MS.gene059708 | MS.gene22748 | 0.813488 | 2.50E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22748 | MS.gene93753 | PPI |
| MS.gene019556 | MS.gene22748 | PPI |
| MS.gene22748 | MS.gene94561 | PPI |
| MS.gene22748 | MS.gene056722 | PPI |
| MS.gene22748 | MS.gene040115 | PPI |
| MS.gene22748 | MS.gene001756 | PPI |
| MS.gene047001 | MS.gene22748 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22748.t1 | MTR_7g118230 | 76.316 | 190 | 11 | 2 | 60 | 249 | 33 | 188 | 8.86e-89 | 266 |
| MS.gene22748.t1 | MTR_1g045510 | 36.932 | 176 | 99 | 3 | 70 | 244 | 113 | 277 | 7.75e-26 | 102 |
| MS.gene22748.t1 | MTR_1g056520 | 33.990 | 203 | 108 | 5 | 55 | 249 | 101 | 285 | 6.66e-25 | 100 |
| MS.gene22748.t1 | MTR_7g106440 | 31.217 | 189 | 126 | 3 | 57 | 242 | 96 | 283 | 4.86e-22 | 93.2 |
| MS.gene22748.t1 | MTR_3g027140 | 31.677 | 161 | 107 | 2 | 71 | 231 | 61 | 218 | 2.79e-20 | 86.7 |
| MS.gene22748.t1 | MTR_4g104470 | 30.387 | 181 | 117 | 4 | 71 | 250 | 123 | 295 | 5.57e-17 | 79.0 |
| MS.gene22748.t1 | MTR_4g104470 | 42.697 | 89 | 49 | 1 | 60 | 148 | 208 | 294 | 3.11e-14 | 71.2 |
| MS.gene22748.t1 | MTR_1g097440 | 34.783 | 161 | 90 | 4 | 62 | 222 | 113 | 258 | 1.07e-16 | 79.7 |
| MS.gene22748.t1 | MTR_3g075500 | 31.638 | 177 | 111 | 4 | 71 | 244 | 110 | 279 | 1.12e-16 | 78.2 |
| MS.gene22748.t1 | MTR_3g075500 | 38.889 | 90 | 51 | 2 | 55 | 143 | 193 | 279 | 2.59e-12 | 65.5 |
| MS.gene22748.t1 | MTR_1g064230 | 28.571 | 266 | 143 | 7 | 9 | 244 | 21 | 269 | 2.29e-16 | 77.0 |
| MS.gene22748.t1 | MTR_3g075500 | 29.762 | 168 | 109 | 3 | 71 | 236 | 110 | 270 | 6.68e-15 | 72.8 |
| MS.gene22748.t1 | MTR_6g040190 | 30.601 | 183 | 109 | 7 | 72 | 252 | 115 | 281 | 1.67e-12 | 67.0 |
| MS.gene22748.t1 | MTR_2g097960 | 26.036 | 169 | 113 | 5 | 72 | 238 | 17 | 175 | 6.60e-12 | 65.1 |
| MS.gene22748.t1 | MTR_7g118120 | 24.277 | 173 | 106 | 3 | 52 | 220 | 83 | 234 | 8.13e-12 | 65.1 |
| MS.gene22748.t1 | MTR_5g030020 | 30.682 | 176 | 113 | 5 | 72 | 245 | 98 | 266 | 1.72e-11 | 63.5 |
| MS.gene22748.t1 | MTR_4g085540 | 26.020 | 196 | 121 | 6 | 62 | 252 | 117 | 293 | 1.91e-11 | 63.9 |
| MS.gene22748.t1 | MTR_6g040070 | 30.464 | 151 | 92 | 3 | 72 | 222 | 17 | 154 | 2.41e-11 | 63.9 |
| MS.gene22748.t1 | MTR_3g102040 | 26.230 | 183 | 120 | 5 | 72 | 252 | 114 | 283 | 2.78e-11 | 63.5 |
| MS.gene22748.t1 | MTR_7g102730 | 27.027 | 185 | 119 | 4 | 69 | 252 | 9 | 178 | 3.12e-11 | 63.5 |
| MS.gene22748.t1 | MTR_1g019150 | 24.153 | 236 | 153 | 9 | 26 | 252 | 73 | 291 | 3.79e-11 | 63.2 |
| MS.gene22748.t1 | MTR_1g061870 | 28.977 | 176 | 120 | 5 | 70 | 244 | 194 | 365 | 4.78e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22748.t1 | AT1G01080 | 54.872 | 195 | 80 | 3 | 64 | 253 | 102 | 293 | 4.80e-69 | 214 |
| MS.gene22748.t1 | AT1G01080 | 54.592 | 196 | 80 | 4 | 64 | 253 | 102 | 294 | 2.43e-67 | 210 |
| MS.gene22748.t1 | AT1G01080 | 54.802 | 177 | 72 | 3 | 64 | 235 | 102 | 275 | 1.22e-59 | 190 |
| MS.gene22748.t1 | AT3G52150 | 29.646 | 226 | 139 | 6 | 37 | 247 | 33 | 253 | 6.79e-22 | 91.7 |
| MS.gene22748.t1 | AT3G52150 | 29.646 | 226 | 139 | 6 | 37 | 247 | 33 | 253 | 6.79e-22 | 91.7 |
| MS.gene22748.t1 | AT1G60000 | 31.111 | 270 | 140 | 11 | 1 | 244 | 1 | 250 | 1.44e-21 | 90.9 |
| MS.gene22748.t1 | AT3G52380 | 31.285 | 179 | 119 | 4 | 67 | 242 | 113 | 290 | 1.12e-20 | 89.7 |
| MS.gene22748.t1 | AT5G50250 | 30.928 | 194 | 119 | 5 | 59 | 251 | 108 | 287 | 1.09e-18 | 83.6 |
| MS.gene22748.t1 | AT5G50250 | 39.560 | 91 | 53 | 1 | 58 | 148 | 197 | 285 | 2.55e-13 | 68.6 |
| MS.gene22748.t1 | AT2G37220 | 28.230 | 209 | 116 | 4 | 61 | 246 | 82 | 279 | 9.79e-18 | 80.9 |
| MS.gene22748.t1 | AT4G24770 | 32.571 | 175 | 109 | 4 | 71 | 244 | 151 | 317 | 1.51e-15 | 75.5 |
| MS.gene22748.t1 | AT4G24770 | 42.308 | 78 | 45 | 0 | 71 | 148 | 245 | 322 | 3.64e-13 | 68.6 |
| MS.gene22748.t1 | AT4G24770 | 32.571 | 175 | 109 | 4 | 71 | 244 | 151 | 317 | 1.51e-15 | 75.5 |
| MS.gene22748.t1 | AT4G24770 | 42.308 | 78 | 45 | 0 | 71 | 148 | 245 | 322 | 3.64e-13 | 68.6 |
| MS.gene22748.t1 | AT2G35410 | 32.461 | 191 | 120 | 6 | 57 | 245 | 86 | 269 | 1.83e-14 | 72.0 |
| MS.gene22748.t1 | AT1G22760 | 28.877 | 187 | 120 | 4 | 34 | 220 | 103 | 276 | 2.09e-13 | 70.1 |
| MS.gene22748.t1 | AT3G16380 | 29.670 | 182 | 114 | 4 | 72 | 252 | 23 | 191 | 3.84e-13 | 68.9 |
| MS.gene22748.t1 | AT1G71770 | 28.877 | 187 | 120 | 4 | 36 | 222 | 115 | 288 | 2.14e-12 | 67.0 |
| MS.gene22748.t1 | AT1G71770 | 28.877 | 187 | 120 | 4 | 36 | 222 | 115 | 288 | 2.14e-12 | 67.0 |
| MS.gene22748.t1 | AT2G23350 | 26.203 | 187 | 115 | 5 | 72 | 252 | 136 | 305 | 4.50e-12 | 65.9 |
| MS.gene22748.t1 | AT4G34110 | 27.419 | 186 | 114 | 6 | 72 | 252 | 126 | 295 | 2.03e-11 | 63.9 |
| MS.gene22748.t1 | AT1G34140 | 32.215 | 149 | 86 | 5 | 72 | 220 | 33 | 166 | 5.10e-11 | 62.4 |
| MS.gene22748.t1 | AT4G16280 | 27.322 | 183 | 109 | 6 | 71 | 245 | 121 | 287 | 6.97e-11 | 62.4 |
| MS.gene22748.t1 | AT4G16280 | 27.322 | 183 | 109 | 6 | 71 | 245 | 121 | 287 | 7.75e-11 | 62.0 |
| MS.gene22748.t1 | AT4G16280 | 27.322 | 183 | 109 | 6 | 71 | 245 | 46 | 212 | 7.83e-11 | 62.4 |
| MS.gene22748.t1 | AT2G36660 | 29.348 | 184 | 110 | 5 | 72 | 252 | 26 | 192 | 8.40e-11 | 62.0 |
Find 61 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACATCTCTTTGGTAAATT+TGG | 0.099306 | 7.3:-394883 | MS.gene22748:CDS |
| AAGAGATGTCTCACGTCTTC+AGG | 0.315903 | 7.3:+394895 | None:intergenic |
| TGTTGAGTATCACAGCTTCT+AGG | 0.370545 | 7.3:+395363 | None:intergenic |
| TCTCACCAGTCTCTGCATTT+CGG | 0.377067 | 7.3:+395220 | None:intergenic |
| CAGAGACTGGTGAGAGTAAA+GGG | 0.393341 | 7.3:-395212 | MS.gene22748:CDS |
| CTCCAAGTAGTGGCTGCTTA+TGG | 0.394918 | 7.3:+395535 | None:intergenic |
| TACCATAAGCAGCCACTACT+TGG | 0.428423 | 7.3:-395537 | MS.gene22748:CDS |
| TGCAGACGTAAACTTGGGTT+GGG | 0.442375 | 7.3:+395391 | None:intergenic |
| GGTGTTGCAAGATTTCAATC+AGG | 0.443133 | 7.3:-394842 | MS.gene22748:CDS |
| TTCCCAACATACACCTTATG+AGG | 0.456223 | 7.3:+394937 | None:intergenic |
| GAAGGTTGCAGACGTAAACT+TGG | 0.462333 | 7.3:+395385 | None:intergenic |
| TAACGAAGTGGAAGAGAAAG+AGG | 0.463472 | 7.3:+395563 | None:intergenic |
| TGTTGGTGGGCGCGAAATGC+GGG | 0.472414 | 7.3:-395040 | MS.gene22748:CDS |
| CTTTGGTAAATTTGGAAATG+TGG | 0.479793 | 7.3:-394875 | MS.gene22748:CDS |
| GCAGAGACTGGTGAGAGTAA+AGG | 0.480321 | 7.3:-395213 | MS.gene22748:CDS |
| GTCCTCATAAGGTGTATGTT+GGG | 0.485859 | 7.3:-394939 | MS.gene22748:CDS |
| TTGCAGACGTAAACTTGGGT+TGG | 0.485972 | 7.3:+395390 | None:intergenic |
| ATACTATGAAGGTCCTCATA+AGG | 0.498833 | 7.3:-394950 | MS.gene22748:CDS |
| GAAGACGTGAGACATCTCTT+TGG | 0.500754 | 7.3:-394892 | MS.gene22748:CDS |
| AATGCAATTGCTGCATTGGA+TGG | 0.502487 | 7.3:-395150 | MS.gene22748:CDS |
| GGGAGTGCTTATGTCACAAT+GGG | 0.508546 | 7.3:-395192 | MS.gene22748:CDS |
| TCGTTTGAATTGAAGGATGT+TGG | 0.510713 | 7.3:-395057 | MS.gene22748:intron |
| ACAACCACGTAAGTTGAAGC+TGG | 0.512125 | 7.3:-395418 | MS.gene22748:CDS |
| CGCGAGGAGAAAGAAGGATA+AGG | 0.512495 | 7.3:+395474 | None:intergenic |
| GGTCCTCATAAGGTGTATGT+TGG | 0.523656 | 7.3:-394940 | MS.gene22748:CDS |
| GAAACACAGAGTAGCAGAGT+TGG | 0.527590 | 7.3:+395587 | None:intergenic |
| GTATATAGTTCTTCTTCTCA+CGG | 0.533646 | 7.3:+394969 | None:intergenic |
| TCTAGTGGTTAGAGAGGGTG+TGG | 0.535491 | 7.3:-394645 | MS.gene22748:CDS |
| AGAAGAACTATATACTATGA+AGG | 0.536527 | 7.3:-394961 | MS.gene22748:CDS |
| ATGTTGGTGGGCGCGAAATG+CGG | 0.539679 | 7.3:-395041 | MS.gene22748:CDS |
| TATATAGTTCTTCTTCTCAC+GGG | 0.541659 | 7.3:+394970 | None:intergenic |
| TCGAACTCTAGTGGTTAGAG+AGG | 0.547494 | 7.3:-394651 | MS.gene22748:CDS |
| CAACCACGTAAGTTGAAGCT+GGG | 0.548485 | 7.3:-395417 | MS.gene22748:CDS |
| AAGCAGCCACTACTTGGAGT+TGG | 0.552480 | 7.3:-395531 | MS.gene22748:CDS |
| GAGGAGTGAAGAGATGAAGT+AGG | 0.557135 | 7.3:+395340 | None:intergenic |
| CTGTGACGCGAGGAGAAAGA+AGG | 0.561006 | 7.3:+395468 | None:intergenic |
| GTGTTGCAAGATTTCAATCA+GGG | 0.561480 | 7.3:-394841 | MS.gene22748:CDS |
| TTTGAATTGAAGGATGTTGG+TGG | 0.563904 | 7.3:-395054 | MS.gene22748:intron |
| GTTTGCCGAAATGCAGAGAC+TGG | 0.571702 | 7.3:-395225 | MS.gene22748:CDS |
| AGTTTCATTGAGGGACAAAG+AGG | 0.576058 | 7.3:+394762 | None:intergenic |
| TTGAATTGAAGGATGTTGGT+GGG | 0.579799 | 7.3:-395053 | MS.gene22748:intron |
| GAGTATCCAACTCCAAGTAG+TGG | 0.587862 | 7.3:+395525 | None:intergenic |
| GAGTATCACAGCTTCTAGGA+AGG | 0.590293 | 7.3:+395367 | None:intergenic |
| CTTCATCTCTTCACTCCTCA+CGG | 0.594839 | 7.3:-395336 | MS.gene22748:CDS |
| TTCCCCAGCTTCAACTTACG+TGG | 0.601446 | 7.3:+395414 | None:intergenic |
| AGGGAGTGCTTATGTCACAA+TGG | 0.612091 | 7.3:-395193 | MS.gene22748:CDS |
| AAGGTTGCAGACGTAAACTT+GGG | 0.613456 | 7.3:+395386 | None:intergenic |
| AATGGACGCGCTGTGACGCG+AGG | 0.621619 | 7.3:+395458 | None:intergenic |
| TGGAAATGTGGCTAGTGTGA+GGG | 0.626364 | 7.3:-394863 | MS.gene22748:CDS |
| ATAGTTCTTCTTCTCACGGG+AGG | 0.629773 | 7.3:+394973 | None:intergenic |
| AATTGCTGCATTGGATGGAT+CGG | 0.641488 | 7.3:-395145 | MS.gene22748:intron |
| TTGGAAATGTGGCTAGTGTG+AGG | 0.645229 | 7.3:-394864 | MS.gene22748:CDS |
| ACGTACCTCGGTAGATAGAA+CGG | 0.653839 | 7.3:+395311 | None:intergenic |
| CGAACTCTAGTGGTTAGAGA+GGG | 0.654487 | 7.3:-394650 | MS.gene22748:CDS |
| TTGTGAGAGATAAGAGACAA+AGG | 0.657808 | 7.3:+394798 | None:intergenic |
| AACCACGTAAGTTGAAGCTG+GGG | 0.663989 | 7.3:-395416 | MS.gene22748:CDS |
| CTTATGGTAGAGTAACGAAG+TGG | 0.680507 | 7.3:+395551 | None:intergenic |
| TGTTGCAAGATTTCAATCAG+GGG | 0.681995 | 7.3:-394840 | MS.gene22748:CDS |
| AAGAGACAAAGGCATAGACA+CGG | 0.730141 | 7.3:+394809 | None:intergenic |
| GTAGATAGAACGGTACCGTG+AGG | 0.731002 | 7.3:+395321 | None:intergenic |
| CGGTACCGTTCTATCTACCG+AGG | 0.742490 | 7.3:-395316 | MS.gene22748:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CATTATTACTTGTAATGTAA+TGG | - | chr7.3:394951-394970 | MS.gene22748:CDS | 20.0% |
| !!! | ATATTTTACAGTTTCATTGA+GGG | + | chr7.3:395472-395491 | None:intergenic | 20.0% |
| ! | AGAAGAACTATATACTATGA+AGG | - | chr7.3:395261-395280 | MS.gene22748:intron | 25.0% |
| !! | CATATTTTACAGTTTCATTG+AGG | + | chr7.3:395473-395492 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCGTTTGAATTGA+AGG | - | chr7.3:395158-395177 | MS.gene22748:CDS | 25.0% |
| AGACATCTCTTTGGTAAATT+TGG | - | chr7.3:395339-395358 | MS.gene22748:CDS | 30.0% | |
| CTTTGGTAAATTTGGAAATG+TGG | - | chr7.3:395347-395366 | MS.gene22748:CDS | 30.0% | |
| GCAGTAGAAAAAGTGAAAAA+AGG | + | chr7.3:395502-395521 | None:intergenic | 30.0% | |
| GTAGAAAAAGTGAAAAAAGG+TGG | + | chr7.3:395499-395518 | None:intergenic | 30.0% | |
| GTATATAGTTCTTCTTCTCA+CGG | + | chr7.3:395256-395275 | None:intergenic | 30.0% | |
| TAAAAATGCAATTGCTGCAT+TGG | - | chr7.3:395068-395087 | MS.gene22748:intron | 30.0% | |
| TATATAGTTCTTCTTCTCAC+GGG | + | chr7.3:395255-395274 | None:intergenic | 30.0% | |
| ! | TTCTTCTTCGTTTTCTACAA+TGG | + | chr7.3:394785-394804 | None:intergenic | 30.0% |
| ATACTATGAAGGTCCTCATA+AGG | - | chr7.3:395272-395291 | MS.gene22748:intron | 35.0% | |
| ATCTTATAATGCTGTGCTGT+AGG | - | chr7.3:394975-394994 | MS.gene22748:CDS | 35.0% | |
| GAAAAAGTGAAAAAAGGTGG+AGG | + | chr7.3:395496-395515 | None:intergenic | 35.0% | |
| GTGTTGCAAGATTTCAATCA+GGG | - | chr7.3:395381-395400 | MS.gene22748:CDS | 35.0% | |
| TCGTTTGAATTGAAGGATGT+TGG | - | chr7.3:395165-395184 | MS.gene22748:CDS | 35.0% | |
| TGTTGCAAGATTTCAATCAG+GGG | - | chr7.3:395382-395401 | MS.gene22748:CDS | 35.0% | |
| TTGAATTGAAGGATGTTGGT+GGG | - | chr7.3:395169-395188 | MS.gene22748:CDS | 35.0% | |
| TTGTGAGAGATAAGAGACAA+AGG | + | chr7.3:395427-395446 | None:intergenic | 35.0% | |
| TTTGAATTGAAGGATGTTGG+TGG | - | chr7.3:395168-395187 | MS.gene22748:CDS | 35.0% | |
| ! | TTGTTCTTGCAGCAATTTTG+TGG | - | chr7.3:395548-395567 | MS.gene22748:CDS | 35.0% |
| AAGGTTGCAGACGTAAACTT+GGG | + | chr7.3:394839-394858 | None:intergenic | 40.0% | |
| AATGCAATTGCTGCATTGGA+TGG | - | chr7.3:395072-395091 | MS.gene22748:intron | 40.0% | |
| AATTGCTGCATTGGATGGAT+CGG | - | chr7.3:395077-395096 | MS.gene22748:intron | 40.0% | |
| AGCAACATACTTACGTACCT+CGG | + | chr7.3:394926-394945 | None:intergenic | 40.0% | |
| AGTTTCATTGAGGGACAAAG+AGG | + | chr7.3:395463-395482 | None:intergenic | 40.0% | |
| CTTATGGTAGAGTAACGAAG+TGG | + | chr7.3:394674-394693 | None:intergenic | 40.0% | |
| GTCCTCATAAGGTGTATGTT+GGG | - | chr7.3:395283-395302 | MS.gene22748:intron | 40.0% | |
| TAACGAAGTGGAAGAGAAAG+AGG | + | chr7.3:394662-394681 | None:intergenic | 40.0% | |
| TGTTGAGTATCACAGCTTCT+AGG | + | chr7.3:394862-394881 | None:intergenic | 40.0% | |
| TTCCCAACATACACCTTATG+AGG | + | chr7.3:395288-395307 | None:intergenic | 40.0% | |
| ! | AAGAGACAAAGGCATAGACA+CGG | + | chr7.3:395416-395435 | None:intergenic | 40.0% |
| ! | ATTTTGTGGTCGAACTCTAG+TGG | - | chr7.3:395562-395581 | MS.gene22748:CDS | 40.0% |
| ! | GGTGTTGCAAGATTTCAATC+AGG | - | chr7.3:395380-395399 | MS.gene22748:CDS | 40.0% |
| AAGAGATGTCTCACGTCTTC+AGG | + | chr7.3:395330-395349 | None:intergenic | 45.0% | |
| ACGTACCTCGGTAGATAGAA+CGG | + | chr7.3:394914-394933 | None:intergenic | 45.0% | |
| ATAGTTCTTCTTCTCACGGG+AGG | + | chr7.3:395252-395271 | None:intergenic | 45.0% | |
| CAGAGACTGGTGAGAGTAAA+GGG | - | chr7.3:395010-395029 | MS.gene22748:CDS | 45.0% | |
| CGAACTCTAGTGGTTAGAGA+GGG | - | chr7.3:395572-395591 | MS.gene22748:CDS | 45.0% | |
| CTTCATCTCTTCACTCCTCA+CGG | - | chr7.3:394886-394905 | MS.gene22748:CDS | 45.0% | |
| GAAACACAGAGTAGCAGAGT+TGG | + | chr7.3:394638-394657 | None:intergenic | 45.0% | |
| GAAGACGTGAGACATCTCTT+TGG | - | chr7.3:395330-395349 | MS.gene22748:CDS | 45.0% | |
| GAAGGTTGCAGACGTAAACT+TGG | + | chr7.3:394840-394859 | None:intergenic | 45.0% | |
| GAGGAGTGAAGAGATGAAGT+AGG | + | chr7.3:394885-394904 | None:intergenic | 45.0% | |
| GAGTATCCAACTCCAAGTAG+TGG | + | chr7.3:394700-394719 | None:intergenic | 45.0% | |
| GCTGCAAGAACAAGACTAGT+AGG | + | chr7.3:395541-395560 | None:intergenic | 45.0% | |
| GGTCCTCATAAGGTGTATGT+TGG | - | chr7.3:395282-395301 | MS.gene22748:intron | 45.0% | |
| TACCATAAGCAGCCACTACT+TGG | - | chr7.3:394685-394704 | MS.gene22748:intron | 45.0% | |
| TCGAACTCTAGTGGTTAGAG+AGG | - | chr7.3:395571-395590 | MS.gene22748:CDS | 45.0% | |
| TCTCACCAGTCTCTGCATTT+CGG | + | chr7.3:395005-395024 | None:intergenic | 45.0% | |
| TGCAGACGTAAACTTGGGTT+GGG | + | chr7.3:394834-394853 | None:intergenic | 45.0% | |
| TGGAAATGTGGCTAGTGTGA+GGG | - | chr7.3:395359-395378 | MS.gene22748:CDS | 45.0% | |
| TTGCAGACGTAAACTTGGGT+TGG | + | chr7.3:394835-394854 | None:intergenic | 45.0% | |
| TTGGAAATGTGGCTAGTGTG+AGG | - | chr7.3:395358-395377 | MS.gene22748:CDS | 45.0% | |
| ! | AACCACGTAAGTTGAAGCTG+GGG | - | chr7.3:394806-394825 | MS.gene22748:CDS | 45.0% |
| ! | ACAACCACGTAAGTTGAAGC+TGG | - | chr7.3:394804-394823 | MS.gene22748:CDS | 45.0% |
| ! | CAACCACGTAAGTTGAAGCT+GGG | - | chr7.3:394805-394824 | MS.gene22748:CDS | 45.0% |
| ! | GAGTATCACAGCTTCTAGGA+AGG | + | chr7.3:394858-394877 | None:intergenic | 45.0% |
| !! | AGGGAGTGCTTATGTCACAA+TGG | - | chr7.3:395029-395048 | MS.gene22748:CDS | 45.0% |
| !! | GGGAGTGCTTATGTCACAAT+GGG | - | chr7.3:395030-395049 | MS.gene22748:CDS | 45.0% |
| AAGCAGCCACTACTTGGAGT+TGG | - | chr7.3:394691-394710 | MS.gene22748:intron | 50.0% | |
| CGCGAGGAGAAAGAAGGATA+AGG | + | chr7.3:394751-394770 | None:intergenic | 50.0% | |
| CTCCAAGTAGTGGCTGCTTA+TGG | + | chr7.3:394690-394709 | None:intergenic | 50.0% | |
| GCAGAGACTGGTGAGAGTAA+AGG | - | chr7.3:395009-395028 | MS.gene22748:CDS | 50.0% | |
| GTAGATAGAACGGTACCGTG+AGG | + | chr7.3:394904-394923 | None:intergenic | 50.0% | |
| GTTTGCCGAAATGCAGAGAC+TGG | - | chr7.3:394997-395016 | MS.gene22748:CDS | 50.0% | |
| TCTAGTGGTTAGAGAGGGTG+TGG | - | chr7.3:395577-395596 | MS.gene22748:CDS | 50.0% | |
| TTCCCCAGCTTCAACTTACG+TGG | + | chr7.3:394811-394830 | None:intergenic | 50.0% | |
| CGGTACCGTTCTATCTACCG+AGG | - | chr7.3:394906-394925 | MS.gene22748:CDS | 55.0% | |
| CTGTGACGCGAGGAGAAAGA+AGG | + | chr7.3:394757-394776 | None:intergenic | 55.0% | |
| ! | ATGTTGGTGGGCGCGAAATG+CGG | - | chr7.3:395181-395200 | MS.gene22748:CDS | 55.0% |
| ! | TGTTGGTGGGCGCGAAATGC+GGG | - | chr7.3:395182-395201 | MS.gene22748:CDS | 60.0% |
| AATGGACGCGCTGTGACGCG+AGG | + | chr7.3:394767-394786 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 394628 | 395616 | 394628 | ID=MS.gene22748 |
| chr7.3 | mRNA | 394628 | 395616 | 394628 | ID=MS.gene22748.t1;Parent=MS.gene22748 |
| chr7.3 | exon | 395317 | 395616 | 395317 | ID=MS.gene22748.t1.exon1;Parent=MS.gene22748.t1 |
| chr7.3 | CDS | 395317 | 395616 | 395317 | ID=cds.MS.gene22748.t1;Parent=MS.gene22748.t1 |
| chr7.3 | exon | 395146 | 395247 | 395146 | ID=MS.gene22748.t1.exon2;Parent=MS.gene22748.t1 |
| chr7.3 | CDS | 395146 | 395247 | 395146 | ID=cds.MS.gene22748.t1;Parent=MS.gene22748.t1 |
| chr7.3 | exon | 394762 | 395064 | 394762 | ID=MS.gene22748.t1.exon3;Parent=MS.gene22748.t1 |
| chr7.3 | CDS | 394762 | 395064 | 394762 | ID=cds.MS.gene22748.t1;Parent=MS.gene22748.t1 |
| chr7.3 | exon | 394628 | 394684 | 394628 | ID=MS.gene22748.t1.exon4;Parent=MS.gene22748.t1 |
| chr7.3 | CDS | 394628 | 394684 | 394628 | ID=cds.MS.gene22748.t1;Parent=MS.gene22748.t1 |
| Gene Sequence |
| Protein sequence |
