AlfalfaGEDB | MS.gene23306

M. sativa cultivar XinJiangDaYe / MS.gene23306

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23306.t1	XP_003606964.1	95.6	225	10	0	1	225	1	225	2.00E-109	405.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23306.t1	G7JHF1	95.6	225	10	0	1	225	1	225	1.4e-109	405.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene23306	0.81406	1.87E-51	-1.69E-46
MS.gene050680	MS.gene23306	0.802262	6.10E-49	-1.69E-46
MS.gene050750	MS.gene23306	0.816195	6.27E-52	-1.69E-46
MS.gene050820	MS.gene23306	0.810404	1.17E-50	-1.69E-46
MS.gene050953	MS.gene23306	0.80646	8.14E-50	-1.69E-46
MS.gene051860	MS.gene23306	0.801661	8.10E-49	-1.69E-46
MS.gene051983	MS.gene23306	0.808373	3.20E-50	-1.69E-46
MS.gene053166	MS.gene23306	0.813791	2.14E-51	-1.69E-46
MS.gene053836	MS.gene23306	0.817566	3.09E-52	-1.69E-46
MS.gene054183	MS.gene23306	0.803827	2.89E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23306.t1	MTR_4g070660	95.556	225	10	0	1	225	1	225	2.83e-146	407
MS.gene23306.t1	MTR_4g070640	72.566	226	48	5	1	225	1	213	7.71e-94	273
MS.gene23306.t1	MTR_4g070630	65.000	180	52	3	46	225	1	169	6.79e-72	216
MS.gene23306.t1	MTR_3g117050	37.984	258	101	12	9	221	10	253	4.64e-32	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene23306.t1	AT5G66440	30.705	241	141	8	1	220	1	236	3.01e-23	94.4

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Find 38 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCATAAGCTTCAAA+GGG	0.531611	4.3:-34504570	MS.gene23306:CDS
AAACTCGAGCGAGTATTTAA+AGG	0.299130	4.3:-34504462	MS.gene23306:CDS
AAAGCAACAAAGAGGATTTG+AGG	0.536464	4.3:-34503970	MS.gene23306:CDS
AAAGGGCAACAACTTTGTTA+CGG	0.468035	4.3:-34504553	MS.gene23306:CDS
AAATATGATAGCACAAAAGA+AGG	0.540013	4.3:-34504263	MS.gene23306:CDS
AACTAAAACAGGGTTGAAGA+AGG	0.504135	4.3:-34504192	MS.gene23306:CDS
AAGCAACAAAGAGGATTTGA+GGG	0.514889	4.3:-34503969	MS.gene23306:CDS
AATGGTGAGAATTTCGTATC+CGG	0.535348	4.3:-34504045	MS.gene23306:CDS
ACTAAAACAGGGTTGAAGAA+GGG	0.598384	4.3:-34504191	MS.gene23306:CDS
AGAAAATGAAAACTAAAACA+GGG	0.723999	4.3:-34504202	MS.gene23306:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGGGTTATTGTTATAGA+AGG	-	chr4.3:34504410-34504429	MS.gene23306:CDS	30.0%
CAAACAACGTGATGATTATA+AGG	+	chr4.3:34504198-34504217	None:intergenic	30.0%
GATATTTATGAAAAGTTGGC+AGG	-	chr4.3:34504262-34504281	MS.gene23306:CDS	30.0%
TTTATTGCAAAGCAACAAAG+AGG	-	chr4.3:34504607-34504626	MS.gene23306:CDS	30.0%
AAACTCGAGCGAGTATTTAA+AGG	-	chr4.3:34504123-34504142	MS.gene23306:CDS	35.0%
AAAGCAACAAAGAGGATTTG+AGG	-	chr4.3:34504615-34504634	MS.gene23306:CDS	35.0%
AAAGGGCAACAACTTTGTTA+CGG	-	chr4.3:34504032-34504051	MS.gene23306:CDS	35.0%
AACTAAAACAGGGTTGAAGA+AGG	-	chr4.3:34504393-34504412	MS.gene23306:CDS	35.0%
AAGCAACAAAGAGGATTTGA+GGG	-	chr4.3:34504616-34504635	MS.gene23306:CDS	35.0%
AATGGTGAGAATTTCGTATC+CGG	-	chr4.3:34504540-34504559	MS.gene23306:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	34503965	34504642	34503965	ID=MS.gene23306
chr4.3	mRNA	34503965	34504642	34503965	ID=MS.gene23306.t1;Parent=MS.gene23306
chr4.3	exon	34503965	34504642	34503965	ID=MS.gene23306.t1.exon1;Parent=MS.gene23306.t1
chr4.3	CDS	34503965	34504642	34503965	ID=cds.MS.gene23306.t1;Parent=MS.gene23306.t1

Gene Sequence

>MS.gene23306

ATGGAGTCGTTCAGCTTTAACCTCCAAGCAGAGAAAGCCAACGCAATCCTAAAACATCATAAGCTTCAAAGGGCAACAACTTTGTTACGGCTCGTTGAAGTGTGTGTTGTTTTGGTCCTGATTTCAAGGCTTTCTATGAGGTTACCAATTGTGGTAAGAAACTCGAGCGAGTATTTAAAGGATATTTCAGTCTTTATCAATAGCCACTGTTTTGTCTTCGCTATCGGAAACCTTATAATCATCACGTTGTTTGCTCAAGGTAATAGAAAAAACATTCCAAAAGAACAGGAACACGATGATATTTATGAAAAGTTGGCAGGCAAAAGTATAAAGCACGAAGAAAAAGAGAGAATAATAAAATATGATAGCACAAAAGAAGGTGCTAGCATAGAGAACAAGAGAATTGATGATGCGGAAGAGAAAATGAAAACTAAAACAGGGTTGAAGAAGGGTTATTGTTATAGAAGGTGTGAAACTGAGATTTTGAAGAAACGGCGTCGTGTGCTGCGAAGATGTGAGAGTGAGAACAGCGGAAGGAAAAAGATTGAAGCTGCTCCTGCTGCTGGTGAGGAGAAAATGGTGAGAATTTCGTATCCGGAGGATGAGATGAGCAACGAGGAGTTTCGTCGTACTGTAGAGGCTTTTATTGCAAAGCAACAAAGAGGATTTGAGGGGTAG

Protein sequence

>MS.gene23306.t1

MESFSFNLQAEKANAILKHHKLQRATTLLRLVEVCVVLVLISRLSMRLPIVVRNSSEYLKDISVFINSHCFVFAIGNLIIITLFAQGNRKNIPKEQEHDDIYEKLAGKSIKHEEKERIIKYDSTKEGASIENKRIDDAEEKMKTKTGLKKGYCYRRCETEILKKRRRVLRRCESENSGRKKIEAAPAAGEEKMVRISYPEDEMSNEEFRRTVEAFIAKQQRGFEG