Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23766.t1 | XP_013448602.1 | 98.7 | 386 | 5 | 0 | 7 | 392 | 217 | 602 | 1.10E-216 | 762.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23766.t1 | Q55GA4 | 32.3 | 396 | 244 | 6 | 15 | 388 | 240 | 633 | 2.8e-51 | 204.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23766.t1 | A0A072TYP8 | 98.7 | 386 | 5 | 0 | 7 | 392 | 217 | 602 | 7.9e-217 | 762.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049821 | MS.gene23766 | 0.800451 | 1.43E-48 | -1.69E-46 |
| MS.gene050689 | MS.gene23766 | 0.810821 | 9.53E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene23766 | 0.868423 | 6.60E-66 | -1.69E-46 |
| MS.gene050901 | MS.gene23766 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene051233 | MS.gene23766 | 0.80435 | 2.25E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene23766 | 0.817019 | 4.10E-52 | -1.69E-46 |
| MS.gene051850 | MS.gene23766 | 0.810035 | 1.41E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene23766 | 0.813443 | 2.55E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene23766 | 0.802486 | 5.48E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene23766 | 0.835963 | 1.24E-56 | -1.69E-46 |
| MS.gene053171 | MS.gene23766 | 0.81711 | 3.91E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene23766 | 0.826414 | 2.75E-54 | -1.69E-46 |
| MS.gene054554 | MS.gene23766 | 0.820747 | 5.83E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene23766 | 0.805856 | 1.09E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene23766 | 0.808067 | 3.72E-50 | -1.69E-46 |
| MS.gene05870 | MS.gene23766 | 0.843186 | 1.64E-58 | -1.69E-46 |
| MS.gene061006 | MS.gene23766 | 0.828409 | 9.14E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene23766 | 0.816749 | 4.71E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23766.t1 | MTR_7g056153 | 98.724 | 392 | 5 | 0 | 1 | 392 | 211 | 602 | 0.0 | 811 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23766.t1 | AT3G25100 | 76.786 | 392 | 91 | 0 | 1 | 392 | 205 | 596 | 0.0 | 657 |
Find 87 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAATAGTTCTGGGAATT+TGG | 0.185937 | 7.3:-48798745 | MS.gene23766:CDS |
| TCCGCTGCTGATGTTGTTTA+TGG | 0.207546 | 7.3:-48798354 | MS.gene23766:CDS |
| ATGAGTTGTTTGAGTCTTCT+TGG | 0.235274 | 7.3:-48797858 | MS.gene23766:CDS |
| ACGTTTCATGGGAAGCCTTC+AGG | 0.247349 | 7.3:-48798915 | MS.gene23766:CDS |
| CTGCTCAAGGAAATGCGTTC+GGG | 0.276711 | 7.3:-48797927 | MS.gene23766:CDS |
| GGATTCATGGTTATAGTTCT+AGG | 0.283095 | 7.3:-48798380 | MS.gene23766:CDS |
| AAGAAGAAGAAAGAGTATTA+TGG | 0.288347 | 7.3:-48798945 | MS.gene23766:CDS |
| GAGCAGTATATTAATAGTTC+TGG | 0.290818 | 7.3:-48798753 | MS.gene23766:CDS |
| TAAAGCAGTTAATTCTTTCA+TGG | 0.305065 | 7.3:-48797821 | MS.gene23766:CDS |
| TTATGGCGTGACTGCGCTTT+TGG | 0.310974 | 7.3:-48798337 | MS.gene23766:CDS |
| CGAATAAAGTTCTTGTTGTT+GGG | 0.318755 | 7.3:-48797975 | MS.gene23766:CDS |
| TGGGATGCAAAAGGCTATTA+AGG | 0.319371 | 7.3:-48798220 | MS.gene23766:CDS |
| TTCTTGTTGTTGGGGTTTGT+GGG | 0.321732 | 7.3:-48797966 | MS.gene23766:CDS |
| TTTGGAGTCGTTCGTGAATT+CGG | 0.323881 | 7.3:-48798319 | MS.gene23766:CDS |
| TATGGATTGGGGACGTTTCA+TGG | 0.327402 | 7.3:-48798927 | MS.gene23766:CDS |
| TGAAAGATGGGACGAAGATT+AGG | 0.328092 | 7.3:-48798701 | MS.gene23766:CDS |
| CCAACAACAAGAACTTTATT+CGG | 0.343201 | 7.3:+48797976 | None:intergenic |
| CCGAATAAAGTTCTTGTTGT+TGG | 0.348360 | 7.3:-48797976 | MS.gene23766:CDS |
| AAGAAAGAGTATTATGGATT+GGG | 0.351360 | 7.3:-48798939 | MS.gene23766:CDS |
| GCTGCTCAAGGAAATGCGTT+CGG | 0.353508 | 7.3:-48797928 | MS.gene23766:CDS |
| GTTCTTGTTGTTGGGGTTTG+TGG | 0.354406 | 7.3:-48797967 | MS.gene23766:CDS |
| GAAAGATGGGACGAAGATTA+GGG | 0.361537 | 7.3:-48798700 | MS.gene23766:CDS |
| GGTTTGTGGGAGGCCTCGTT+TGG | 0.391938 | 7.3:-48797953 | MS.gene23766:CDS |
| GAAGAAAGAGTATTATGGAT+TGG | 0.394642 | 7.3:-48798940 | MS.gene23766:CDS |
| TAAGCAATCCTGGACGAATT+CGG | 0.403035 | 7.3:+48798675 | None:intergenic |
| AATGGATGCTTTGAGAGAAA+AGG | 0.409633 | 7.3:-48798043 | MS.gene23766:CDS |
| GCCAAAGCTGATGCTGTTGC+AGG | 0.419676 | 7.3:-48798643 | MS.gene23766:CDS |
| AATTCTGTTACTTTGAAAGA+TGG | 0.420708 | 7.3:-48798714 | MS.gene23766:CDS |
| GATCTGTGCTTGTATGTCTC+AGG | 0.429059 | 7.3:-48798001 | MS.gene23766:CDS |
| TCCTGCAACAGCATCAGCTT+TGG | 0.429568 | 7.3:+48798642 | None:intergenic |
| GAAGAAGTTGAAACTGTTGT+TGG | 0.433738 | 7.3:-48798544 | MS.gene23766:CDS |
| CGTTTCATGGGAAGCCTTCA+GGG | 0.436837 | 7.3:-48798914 | MS.gene23766:CDS |
| TCTGCGGATTCTAAACTGTT+GGG | 0.441601 | 7.3:-48798102 | MS.gene23766:CDS |
| AGAATACCGATGAATTGCTT+TGG | 0.442265 | 7.3:-48798857 | MS.gene23766:CDS |
| CTCATCCTCATAAGCAATCC+TGG | 0.446687 | 7.3:+48798665 | None:intergenic |
| AAATCAGTAAGTCCATATTC+CGG | 0.451792 | 7.3:+48798423 | None:intergenic |
| AATGTTGATAAGCTCAAAGA+TGG | 0.453499 | 7.3:-48798240 | MS.gene23766:CDS |
| TTCGTCCAGGATTGCTTATG+AGG | 0.458166 | 7.3:-48798670 | MS.gene23766:CDS |
| AAGATCCGGTGAAAATGTAT+AGG | 0.461080 | 7.3:-48798968 | None:intergenic |
| AGCAGTATATTAATAGTTCT+GGG | 0.462246 | 7.3:-48798752 | MS.gene23766:CDS |
| GATTCATGGTTATAGTTCTA+GGG | 0.467181 | 7.3:-48798379 | MS.gene23766:CDS |
| AAACTGTTGTTGGCTAGGAT+GGG | 0.473055 | 7.3:-48798534 | MS.gene23766:CDS |
| GAGGTATAGTGATGGTGTTA+TGG | 0.474525 | 7.3:-48798781 | MS.gene23766:CDS |
| GAAACTGTTGTTGGCTAGGA+TGG | 0.484688 | 7.3:-48798535 | MS.gene23766:CDS |
| CCTCGTTTGGCTGCTGCTCA+AGG | 0.493809 | 7.3:-48797940 | MS.gene23766:CDS |
| TGCGTTTAGAAGTGCGGCTG+AGG | 0.495604 | 7.3:-48797902 | MS.gene23766:CDS |
| TTGAAGACGTGGAGTGATAA+CGG | 0.498431 | 7.3:-48798570 | MS.gene23766:CDS |
| ATTCTGTTACTTTGAAAGAT+GGG | 0.502719 | 7.3:-48798713 | MS.gene23766:CDS |
| ATGGATGCTTTGAGAGAAAA+GGG | 0.510225 | 7.3:-48798042 | MS.gene23766:CDS |
| CAAAACTTTGTCAAAGCTTG+AGG | 0.512346 | 7.3:+48798075 | None:intergenic |
| GTCTGCGGATTCTAAACTGT+TGG | 0.516003 | 7.3:-48798103 | MS.gene23766:CDS |
| GAATAAAGTTCTTGTTGTTG+GGG | 0.518055 | 7.3:-48797974 | MS.gene23766:CDS |
| GAGTCGTTCGTGAATTCGGA+TGG | 0.524667 | 7.3:-48798315 | MS.gene23766:CDS |
| GCTCAAAGATGGGATGCAAA+AGG | 0.532197 | 7.3:-48798229 | MS.gene23766:CDS |
| AGTTGAAACTGTTGTTGGCT+AGG | 0.535306 | 7.3:-48798539 | MS.gene23766:CDS |
| AGCTGATGCTGTTGCAGGAG+TGG | 0.540247 | 7.3:-48798638 | MS.gene23766:CDS |
| AAGAAGACTCAAACAACTCA+TGG | 0.542997 | 7.3:+48797860 | None:intergenic |
| ATGGATTGGGGACGTTTCAT+GGG | 0.543631 | 7.3:-48798926 | MS.gene23766:CDS |
| TTGTTGTTGGGGTTTGTGGG+AGG | 0.545204 | 7.3:-48797963 | MS.gene23766:CDS |
| TTAGGGCACCGAATTCGTCC+AGG | 0.545508 | 7.3:-48798683 | MS.gene23766:CDS |
| TAGTTCTGGGAATTTGGATG+CGG | 0.555180 | 7.3:-48798739 | MS.gene23766:CDS |
| AACTGTTGTTGGCTAGGATG+GGG | 0.557759 | 7.3:-48798533 | MS.gene23766:CDS |
| TAGTGATGGTGTTATGGAGT+TGG | 0.564329 | 7.3:-48798775 | MS.gene23766:CDS |
| AGCTAACCAAAGCAATTCAT+CGG | 0.567480 | 7.3:+48798851 | None:intergenic |
| CGGGGTTGCGTTTAGAAGTG+CGG | 0.569454 | 7.3:-48797908 | MS.gene23766:CDS |
| AGAAAGAGTATTATGGATTG+GGG | 0.575426 | 7.3:-48798938 | MS.gene23766:CDS |
| ATTGCTTTGGTTAGCTTGTG+TGG | 0.578683 | 7.3:-48798844 | MS.gene23766:CDS |
| GACATACAAGCACAGATCAA+AGG | 0.583268 | 7.3:+48798006 | None:intergenic |
| GAAGTGGAAGGAAGTTTCGA+TGG | 0.584074 | 7.3:-48798140 | MS.gene23766:CDS |
| CCGATCAATTTGTACACGAG+AGG | 0.585981 | 7.3:-48798815 | MS.gene23766:CDS |
| ACGGATATATTCGAAGTGGA+AGG | 0.597096 | 7.3:-48798152 | MS.gene23766:CDS |
| TGCTCAAGGAAATGCGTTCG+GGG | 0.600482 | 7.3:-48797926 | MS.gene23766:CDS |
| CTGCGGATTCTAAACTGTTG+GGG | 0.601525 | 7.3:-48798101 | MS.gene23766:CDS |
| AAAGGCTATTAAGGTTCAGA+GGG | 0.602140 | 7.3:-48798211 | MS.gene23766:CDS |
| TGCTTCGATGCAGTTTAATG+TGG | 0.608675 | 7.3:-48798286 | MS.gene23766:CDS |
| GTTTCAGTATATGAATGTTG+AGG | 0.608759 | 7.3:-48798484 | MS.gene23766:CDS |
| AAAAGGCTATTAAGGTTCAG+AGG | 0.612575 | 7.3:-48798212 | MS.gene23766:CDS |
| CCTCTCGTGTACAAATTGAT+CGG | 0.617832 | 7.3:+48798815 | None:intergenic |
| GTTGAAGCTTGACGAGTCTG+CGG | 0.622496 | 7.3:-48798118 | MS.gene23766:CDS |
| CCTTGAGCAGCAGCCAAACG+AGG | 0.631943 | 7.3:+48797940 | None:intergenic |
| TCATACATCAAACACCCTGA+AGG | 0.632800 | 7.3:+48798900 | None:intergenic |
| ATGTTGATAAGCTCAAAGAT+GGG | 0.642662 | 7.3:-48798239 | MS.gene23766:CDS |
| CTTTGAGAGAAAAGGGTGCG+AGG | 0.654784 | 7.3:-48798035 | MS.gene23766:CDS |
| GCCATAAACAACATCAGCAG+CGG | 0.659326 | 7.3:+48798353 | None:intergenic |
| TTGCAACTAAATTGAAGACG+TGG | 0.664821 | 7.3:-48798581 | MS.gene23766:CDS |
| AGTGATGAGAGGTATAGTGA+TGG | 0.665061 | 7.3:-48798789 | MS.gene23766:CDS |
| ACGAGAGGTTGAGTGATGAG+AGG | 0.670283 | 7.3:-48798800 | MS.gene23766:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGTTTTGTTATTTTCTAA+TGG | - | chr7.3:48798691-48798710 | MS.gene23766:CDS | 15.0% |
| !!! | TTACTGATTTTTATTATCGT+GGG | - | chr7.3:48798342-48798361 | MS.gene23766:CDS | 20.0% |
| ! | AGCAGTATATTAATAGTTCT+GGG | - | chr7.3:48798000-48798019 | MS.gene23766:CDS | 25.0% |
| ! | TAAAGCAGTTAATTCTTTCA+TGG | - | chr7.3:48798931-48798950 | MS.gene23766:CDS | 25.0% |
| !!! | AAGAAAGAGTATTATGGATT+GGG | - | chr7.3:48797813-48797832 | MS.gene23766:CDS | 25.0% |
| !!! | AAGAAGAAGAAAGAGTATTA+TGG | - | chr7.3:48797807-48797826 | MS.gene23766:CDS | 25.0% |
| !!! | AATTCTGTTACTTTGAAAGA+TGG | - | chr7.3:48798038-48798057 | MS.gene23766:CDS | 25.0% |
| !!! | ATTCTGTTACTTTGAAAGAT+GGG | - | chr7.3:48798039-48798058 | MS.gene23766:CDS | 25.0% |
| !!! | CTTACTGATTTTTATTATCG+TGG | - | chr7.3:48798341-48798360 | MS.gene23766:CDS | 25.0% |
| !!! | TATTAATAGTTCTGGGAATT+TGG | - | chr7.3:48798007-48798026 | MS.gene23766:CDS | 25.0% |
| AAAAACGGATATATTCGAAG+TGG | - | chr7.3:48798596-48798615 | MS.gene23766:CDS | 30.0% | |
| AAATCAGTAAGTCCATATTC+CGG | + | chr7.3:48798332-48798351 | None:intergenic | 30.0% | |
| AGTCTTGCGATTATGAAAAA+CGG | - | chr7.3:48798581-48798600 | MS.gene23766:CDS | 30.0% | |
| CCAACAACAAGAACTTTATT+CGG | + | chr7.3:48798779-48798798 | None:intergenic | 30.0% | |
| GAGCAGTATATTAATAGTTC+TGG | - | chr7.3:48797999-48798018 | MS.gene23766:CDS | 30.0% | |
| GTTTCAGTATATGAATGTTG+AGG | - | chr7.3:48798268-48798287 | MS.gene23766:CDS | 30.0% | |
| ! | AATGTTGATAAGCTCAAAGA+TGG | - | chr7.3:48798512-48798531 | MS.gene23766:CDS | 30.0% |
| ! | ATGTTGATAAGCTCAAAGAT+GGG | - | chr7.3:48798513-48798532 | MS.gene23766:CDS | 30.0% |
| ! | GATTCATGGTTATAGTTCTA+GGG | - | chr7.3:48798373-48798392 | MS.gene23766:CDS | 30.0% |
| ! | TTTATTATCGTGGGTTTTTG+AGG | - | chr7.3:48798351-48798370 | MS.gene23766:CDS | 30.0% |
| !! | AGAAAGAGTATTATGGATTG+GGG | - | chr7.3:48797814-48797833 | MS.gene23766:CDS | 30.0% |
| !! | CGAATAAAGTTCTTGTTGTT+GGG | - | chr7.3:48798777-48798796 | MS.gene23766:CDS | 30.0% |
| !! | GAAGAAAGAGTATTATGGAT+TGG | - | chr7.3:48797812-48797831 | MS.gene23766:CDS | 30.0% |
| !! | GAATAAAGTTCTTGTTGTTG+GGG | - | chr7.3:48798778-48798797 | MS.gene23766:CDS | 30.0% |
| AAAAGGCTATTAAGGTTCAG+AGG | - | chr7.3:48798540-48798559 | MS.gene23766:CDS | 35.0% | |
| AAAGGCTATTAAGGTTCAGA+GGG | - | chr7.3:48798541-48798560 | MS.gene23766:CDS | 35.0% | |
| AAGAAGACTCAAACAACTCA+TGG | + | chr7.3:48798895-48798914 | None:intergenic | 35.0% | |
| AGAATACCGATGAATTGCTT+TGG | - | chr7.3:48797895-48797914 | MS.gene23766:CDS | 35.0% | |
| AGCTAACCAAAGCAATTCAT+CGG | + | chr7.3:48797904-48797923 | None:intergenic | 35.0% | |
| ATGAGTTGTTTGAGTCTTCT+TGG | - | chr7.3:48798894-48798913 | MS.gene23766:CDS | 35.0% | |
| CAAAACTTTGTCAAAGCTTG+AGG | + | chr7.3:48798680-48798699 | None:intergenic | 35.0% | |
| GAAGAAGTTGAAACTGTTGT+TGG | - | chr7.3:48798208-48798227 | MS.gene23766:CDS | 35.0% | |
| GAGGTGAAAAAGAAGATGAA+GGG | - | chr7.3:48798287-48798306 | MS.gene23766:CDS | 35.0% | |
| GGATTCATGGTTATAGTTCT+AGG | - | chr7.3:48798372-48798391 | MS.gene23766:CDS | 35.0% | |
| TGAGGTGAAAAAGAAGATGA+AGG | - | chr7.3:48798286-48798305 | MS.gene23766:CDS | 35.0% | |
| TTGCAACTAAATTGAAGACG+TGG | - | chr7.3:48798171-48798190 | MS.gene23766:CDS | 35.0% | |
| ! | CCGAATAAAGTTCTTGTTGT+TGG | - | chr7.3:48798776-48798795 | MS.gene23766:CDS | 35.0% |
| ! | TGAGTTTGAGAAGTTTTTGC+CGG | - | chr7.3:48798310-48798329 | MS.gene23766:CDS | 35.0% |
| !! | AATGGATGCTTTGAGAGAAA+AGG | - | chr7.3:48798709-48798728 | MS.gene23766:CDS | 35.0% |
| !! | ATGGATGCTTTGAGAGAAAA+GGG | - | chr7.3:48798710-48798729 | MS.gene23766:CDS | 35.0% |
| ACGGATATATTCGAAGTGGA+AGG | - | chr7.3:48798600-48798619 | MS.gene23766:CDS | 40.0% | |
| CCTCTCGTGTACAAATTGAT+CGG | + | chr7.3:48797940-48797959 | None:intergenic | 40.0% | |
| GAAAGATGGGACGAAGATTA+GGG | - | chr7.3:48798052-48798071 | MS.gene23766:CDS | 40.0% | |
| GACATACAAGCACAGATCAA+AGG | + | chr7.3:48798749-48798768 | None:intergenic | 40.0% | |
| TAAGCAATCCTGGACGAATT+CGG | + | chr7.3:48798080-48798099 | None:intergenic | 40.0% | |
| TCATACATCAAACACCCTGA+AGG | + | chr7.3:48797855-48797874 | None:intergenic | 40.0% | |
| TCTGCGGATTCTAAACTGTT+GGG | - | chr7.3:48798650-48798669 | MS.gene23766:CDS | 40.0% | |
| TGAAAGATGGGACGAAGATT+AGG | - | chr7.3:48798051-48798070 | MS.gene23766:CDS | 40.0% | |
| TGCTTCGATGCAGTTTAATG+TGG | - | chr7.3:48798466-48798485 | MS.gene23766:CDS | 40.0% | |
| TGGGATGCAAAAGGCTATTA+AGG | - | chr7.3:48798532-48798551 | MS.gene23766:CDS | 40.0% | |
| TTGAAGACGTGGAGTGATAA+CGG | - | chr7.3:48798182-48798201 | MS.gene23766:CDS | 40.0% | |
| ! | AAACTGTTGTTGGCTAGGAT+GGG | - | chr7.3:48798218-48798237 | MS.gene23766:CDS | 40.0% |
| ! | AGTGATGAGAGGTATAGTGA+TGG | - | chr7.3:48797963-48797982 | MS.gene23766:CDS | 40.0% |
| ! | AGTTGAAACTGTTGTTGGCT+AGG | - | chr7.3:48798213-48798232 | MS.gene23766:CDS | 40.0% |
| ! | ATGAGCTAGCTCATTTTCTG+AGG | - | chr7.3:48797871-48797890 | MS.gene23766:CDS | 40.0% |
| ! | GAGAAGTTTTTGCCGGAATA+TGG | - | chr7.3:48798317-48798336 | MS.gene23766:CDS | 40.0% |
| ! | GAGGTATAGTGATGGTGTTA+TGG | - | chr7.3:48797971-48797990 | MS.gene23766:CDS | 40.0% |
| ! | TTTGGAGTCGTTCGTGAATT+CGG | - | chr7.3:48798433-48798452 | MS.gene23766:CDS | 40.0% |
| !! | ATTGCTTTGGTTAGCTTGTG+TGG | - | chr7.3:48797908-48797927 | MS.gene23766:CDS | 40.0% |
| !! | TAGTGATGGTGTTATGGAGT+TGG | - | chr7.3:48797977-48797996 | MS.gene23766:CDS | 40.0% |
| !! | TAGTTCTGGGAATTTGGATG+CGG | - | chr7.3:48798013-48798032 | MS.gene23766:CDS | 40.0% |
| !! | TTCTTGTTGTTGGGGTTTGT+GGG | - | chr7.3:48798786-48798805 | MS.gene23766:CDS | 40.0% |
| CCGATCAATTTGTACACGAG+AGG | - | chr7.3:48797937-48797956 | MS.gene23766:CDS | 45.0% | |
| CTCATCCTCATAAGCAATCC+TGG | + | chr7.3:48798090-48798109 | None:intergenic | 45.0% | |
| CTGCGGATTCTAAACTGTTG+GGG | - | chr7.3:48798651-48798670 | MS.gene23766:CDS | 45.0% | |
| GAAGTGGAAGGAAGTTTCGA+TGG | - | chr7.3:48798612-48798631 | MS.gene23766:CDS | 45.0% | |
| GATCTGTGCTTGTATGTCTC+AGG | - | chr7.3:48798751-48798770 | MS.gene23766:CDS | 45.0% | |
| GCCATAAACAACATCAGCAG+CGG | + | chr7.3:48798402-48798421 | None:intergenic | 45.0% | |
| GCTCAAAGATGGGATGCAAA+AGG | - | chr7.3:48798523-48798542 | MS.gene23766:CDS | 45.0% | |
| GTCTGCGGATTCTAAACTGT+TGG | - | chr7.3:48798649-48798668 | MS.gene23766:CDS | 45.0% | |
| TTCGTCCAGGATTGCTTATG+AGG | - | chr7.3:48798082-48798101 | MS.gene23766:CDS | 45.0% | |
| ! | AACTGTTGTTGGCTAGGATG+GGG | - | chr7.3:48798219-48798238 | MS.gene23766:CDS | 45.0% |
| ! | AGGTTCAGAGGGCAATTTTG+AGG | - | chr7.3:48798552-48798571 | MS.gene23766:CDS | 45.0% |
| ! | GAAACTGTTGTTGGCTAGGA+TGG | - | chr7.3:48798217-48798236 | MS.gene23766:CDS | 45.0% |
| ! | TCCGCTGCTGATGTTGTTTA+TGG | - | chr7.3:48798398-48798417 | MS.gene23766:CDS | 45.0% |
| !! | ATGGATTGGGGACGTTTCAT+GGG | - | chr7.3:48797826-48797845 | MS.gene23766:CDS | 45.0% |
| !! | CGTGGGTTTTTGAGGATTCA+TGG | - | chr7.3:48798359-48798378 | MS.gene23766:CDS | 45.0% |
| !! | GTTCTTGTTGTTGGGGTTTG+TGG | - | chr7.3:48798785-48798804 | MS.gene23766:CDS | 45.0% |
| !! | TATGGATTGGGGACGTTTCA+TGG | - | chr7.3:48797825-48797844 | MS.gene23766:CDS | 45.0% |
| ACGAGAGGTTGAGTGATGAG+AGG | - | chr7.3:48797952-48797971 | MS.gene23766:CDS | 50.0% | |
| ACGTTTCATGGGAAGCCTTC+AGG | - | chr7.3:48797837-48797856 | MS.gene23766:CDS | 50.0% | |
| CGTTTCATGGGAAGCCTTCA+GGG | - | chr7.3:48797838-48797857 | MS.gene23766:CDS | 50.0% | |
| CTGCTCAAGGAAATGCGTTC+GGG | - | chr7.3:48798825-48798844 | MS.gene23766:CDS | 50.0% | |
| GAGTCGTTCGTGAATTCGGA+TGG | - | chr7.3:48798437-48798456 | MS.gene23766:CDS | 50.0% | |
| GCTGCTCAAGGAAATGCGTT+CGG | - | chr7.3:48798824-48798843 | MS.gene23766:CDS | 50.0% | |
| GTTGAAGCTTGACGAGTCTG+CGG | - | chr7.3:48798634-48798653 | MS.gene23766:CDS | 50.0% | |
| TCCTGCAACAGCATCAGCTT+TGG | + | chr7.3:48798113-48798132 | None:intergenic | 50.0% | |
| TGCTCAAGGAAATGCGTTCG+GGG | - | chr7.3:48798826-48798845 | MS.gene23766:CDS | 50.0% | |
| ! | CTTTGAGAGAAAAGGGTGCG+AGG | - | chr7.3:48798717-48798736 | MS.gene23766:CDS | 50.0% |
| ! | TTATGGCGTGACTGCGCTTT+TGG | - | chr7.3:48798415-48798434 | MS.gene23766:CDS | 50.0% |
| ! | TTGTTGTTGGGGTTTGTGGG+AGG | - | chr7.3:48798789-48798808 | MS.gene23766:CDS | 50.0% |
| !!! | CAGAGGGCAATTTTGAGGCA+GGG | - | chr7.3:48798557-48798576 | MS.gene23766:CDS | 50.0% |
| !!! | TCAGAGGGCAATTTTGAGGC+AGG | - | chr7.3:48798556-48798575 | MS.gene23766:CDS | 50.0% |
| AGCTGATGCTGTTGCAGGAG+TGG | - | chr7.3:48798114-48798133 | MS.gene23766:CDS | 55.0% | |
| CGGGGTTGCGTTTAGAAGTG+CGG | - | chr7.3:48798844-48798863 | MS.gene23766:CDS | 55.0% | |
| GCCAAAGCTGATGCTGTTGC+AGG | - | chr7.3:48798109-48798128 | MS.gene23766:CDS | 55.0% | |
| ! | TGCGTTTAGAAGTGCGGCTG+AGG | - | chr7.3:48798850-48798869 | MS.gene23766:CDS | 55.0% |
| !! | TTAGGGCACCGAATTCGTCC+AGG | - | chr7.3:48798069-48798088 | MS.gene23766:CDS | 55.0% |
| CCTCGTTTGGCTGCTGCTCA+AGG | - | chr7.3:48798812-48798831 | MS.gene23766:CDS | 60.0% | |
| CCTTGAGCAGCAGCCAAACG+AGG | + | chr7.3:48798815-48798834 | None:intergenic | 60.0% | |
| GGTTTGTGGGAGGCCTCGTT+TGG | - | chr7.3:48798799-48798818 | MS.gene23766:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 48797798 | 48798976 | 48797798 | ID=MS.gene23766 |
| chr7.3 | mRNA | 48797798 | 48798976 | 48797798 | ID=MS.gene23766.t1;Parent=MS.gene23766 |
| chr7.3 | exon | 48797798 | 48798976 | 48797798 | ID=MS.gene23766.t1.exon1;Parent=MS.gene23766.t1 |
| chr7.3 | CDS | 48797798 | 48798976 | 48797798 | ID=cds.MS.gene23766.t1;Parent=MS.gene23766.t1 |
| Gene Sequence |
| Protein sequence |
