Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24978.t1 | XP_013454808.1 | 99 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 2.30E-47 | 198 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24978.t1 | P81748 | 36.8 | 106 | 66 | 1 | 1 | 106 | 1 | 105 | 1.4e-13 | 77.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24978.t1 | G7JKL0 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 1.6e-47 | 198.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene24978 | -0.806296 | 8.81E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene24978 | -0.809014 | 2.33E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene24978 | -0.802283 | 6.04E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene24978 | -0.824069 | 9.86E-54 | -1.69E-46 |
| MS.gene050737 | MS.gene24978 | -0.80117 | 1.02E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene24978 | -0.801319 | 9.52E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene24978 | -0.813375 | 2.64E-51 | -1.69E-46 |
| MS.gene052463 | MS.gene24978 | -0.808655 | 2.78E-50 | -1.69E-46 |
| MS.gene053079 | MS.gene24978 | -0.808529 | 2.96E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene24978 | -0.825771 | 3.91E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene24978 | -0.827875 | 1.23E-54 | -1.69E-46 |
| MS.gene056045 | MS.gene24978 | -0.804345 | 2.26E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene24978 | -0.810159 | 1.32E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene24978 | -0.805253 | 1.46E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene24978 | -0.814053 | 1.87E-51 | -1.69E-46 |
| MS.gene057919 | MS.gene24978 | -0.806654 | 7.40E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene24978 | -0.802001 | 6.90E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene24978 | -0.811402 | 7.13E-51 | -1.69E-46 |
| MS.gene060935 | MS.gene24978 | -0.808683 | 2.75E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene24978 | -0.82019 | 7.82E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene24978 | -0.818297 | 2.11E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24978.t1 | MTR_4g014040 | 99.048 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 5.88e-72 | 210 |
| MS.gene24978.t1 | MTR_4g014040 | 99.048 | 105 | 1 | 0 | 1 | 105 | 1 | 105 | 8.04e-71 | 208 |
| MS.gene24978.t1 | MTR_4g014040 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 9.47e-71 | 206 |
| MS.gene24978.t1 | MTR_7g059460 | 65.385 | 104 | 36 | 0 | 1 | 104 | 1 | 104 | 1.29e-46 | 145 |
| MS.gene24978.t1 | MTR_7g059460 | 64.762 | 105 | 37 | 0 | 1 | 105 | 1 | 105 | 2.38e-46 | 145 |
| MS.gene24978.t1 | MTR_7g070250 | 59.048 | 105 | 43 | 0 | 1 | 105 | 1 | 105 | 1.05e-44 | 140 |
| MS.gene24978.t1 | MTR_4g013730 | 60.194 | 103 | 41 | 0 | 1 | 103 | 1 | 103 | 4.29e-43 | 137 |
| MS.gene24978.t1 | MTR_0562s0020 | 60.194 | 103 | 41 | 0 | 1 | 103 | 1 | 103 | 4.29e-43 | 137 |
| MS.gene24978.t1 | MTR_4g127370 | 63.208 | 106 | 39 | 0 | 1 | 106 | 739 | 844 | 3.39e-40 | 141 |
| MS.gene24978.t1 | MTR_4g127360 | 55.660 | 106 | 47 | 0 | 1 | 106 | 1 | 106 | 1.19e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24978.t1 | AT5G01650 | 89.623 | 106 | 11 | 0 | 1 | 106 | 1 | 106 | 2.51e-66 | 195 |
| MS.gene24978.t1 | AT5G01650 | 89.423 | 104 | 11 | 0 | 1 | 104 | 1 | 104 | 1.80e-65 | 193 |
| MS.gene24978.t1 | AT5G01650 | 89.423 | 104 | 11 | 0 | 1 | 104 | 1 | 104 | 1.80e-65 | 193 |
| MS.gene24978.t1 | AT5G01650 | 88.679 | 106 | 12 | 0 | 1 | 106 | 1 | 106 | 2.23e-65 | 193 |
| MS.gene24978.t1 | AT5G57170 | 60.377 | 106 | 42 | 0 | 1 | 106 | 1 | 106 | 1.74e-41 | 132 |
| MS.gene24978.t1 | AT5G57170 | 61.165 | 103 | 40 | 0 | 1 | 103 | 1 | 103 | 5.68e-41 | 131 |
| MS.gene24978.t1 | AT3G51660 | 49.020 | 102 | 52 | 0 | 1 | 102 | 1 | 102 | 1.16e-33 | 113 |
Find 32 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCAAGAAGAATCGAGTTT+TGG | 0.237033 | 4.1:+82262517 | None:intergenic |
| CTCAGTCCCACCAAAAGATA+TGG | 0.281811 | 4.1:+82262649 | None:intergenic |
| AGAGAGAGACGTACGGATTC+GGG | 0.319749 | 4.1:+82264504 | None:intergenic |
| GAGAGAGAGACGTACGGATT+CGG | 0.328765 | 4.1:+82264503 | None:intergenic |
| ACTGAGCAGCCAGCAGCTTA+TGG | 0.329165 | 4.1:-82262632 | MS.gene24978:CDS |
| CTAAGTTTCTTGTTCACATC+AGG | 0.346916 | 4.1:+82262581 | None:intergenic |
| GGATCAGTACCCATATCTTT+TGG | 0.355534 | 4.1:-82262659 | MS.gene24978:CDS |
| GCCAGCAGCTTATGGAGAAT+TGG | 0.403975 | 4.1:-82262624 | MS.gene24978:CDS |
| AGAAACTTATACACTTGCCT+TGG | 0.489136 | 4.1:+82262484 | None:intergenic |
| TGACGTTGGTGGAGAGGTTG+AGG | 0.491614 | 4.1:+82264598 | None:intergenic |
| CGAGGTTGACGTTGGTGGAG+AGG | 0.495047 | 4.1:+82264592 | None:intergenic |
| ACCAATTCTCCATAAGCTGC+TGG | 0.496169 | 4.1:+82262623 | None:intergenic |
| AGCGACGGTGGAGGTAGCTT+CGG | 0.506642 | 4.1:+82264542 | None:intergenic |
| TCAGTCCCACCAAAAGATAT+GGG | 0.527678 | 4.1:+82262650 | None:intergenic |
| ACCTTCGAGGTTGACGTTGG+TGG | 0.536981 | 4.1:+82264587 | None:intergenic |
| GGAGGTAGCTTCGGAGAGGA+TGG | 0.541278 | 4.1:+82264551 | None:intergenic |
| TCCACCGTCGCTACTCTCAT+CGG | 0.551038 | 4.1:-82264531 | MS.gene24978:CDS |
| AAGAGGTGTCGACACCTTCG+AGG | 0.580315 | 4.1:+82264574 | None:intergenic |
| TAAGTTTCTTGTTCACATCA+GGG | 0.588217 | 4.1:+82262582 | None:intergenic |
| AGCTTCGGAGAGGATGGAAG+AGG | 0.595909 | 4.1:+82264557 | None:intergenic |
| TATGGAGAATTGGTGTCCAT+CGG | 0.607055 | 4.1:-82262614 | MS.gene24978:CDS |
| TCCACCAACGTCAACCTCGA+AGG | 0.614436 | 4.1:-82264588 | MS.gene24978:CDS |
| GGAGAATTGGTGTCCATCGG+TGG | 0.618543 | 4.1:-82262611 | MS.gene24978:CDS |
| CTTGAAATTCTATGACACCA+AGG | 0.619196 | 4.1:-82262501 | MS.gene24978:CDS |
| ATCAGGGTTAAGACCACCGA+TGG | 0.624244 | 4.1:+82262598 | None:intergenic |
| GATGAGAGTAGCGACGGTGG+AGG | 0.628141 | 4.1:+82264533 | None:intergenic |
| ACCGATGAGAGTAGCGACGG+TGG | 0.643638 | 4.1:+82264530 | None:intergenic |
| GACACCTTCGAGGTTGACGT+TGG | 0.645008 | 4.1:+82264584 | None:intergenic |
| TTGGTGGAGAGGTTGAGGCA+CGG | 0.649461 | 4.1:+82264603 | None:intergenic |
| TATGTGATGATTGTGCTCAA+AGG | 0.665190 | 4.1:-82262680 | MS.gene24978:CDS |
| TTTACCGATGAGAGTAGCGA+CGG | 0.716111 | 4.1:+82264527 | None:intergenic |
| CGGTGGAGGTAGCTTCGGAG+AGG | 0.716958 | 4.1:+82264547 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACATTTTCTTAAATTATTA+TGG | + | chr4.1:82263038-82263057 | None:intergenic | 10.0% |
| !! | AAACCTTTGAATTAATCAAA+AGG | + | chr4.1:82263480-82263499 | None:intergenic | 20.0% |
| !! | AACCTTTGAATTAATCAAAA+GGG | + | chr4.1:82263479-82263498 | None:intergenic | 20.0% |
| !! | GTCAAAACTATAACATATTA+CGG | + | chr4.1:82264345-82264364 | None:intergenic | 20.0% |
| !! | TAATTTATCTGAATGATTTG+AGG | - | chr4.1:82262747-82262766 | MS.gene24978:intron | 20.0% |
| !! | TCAAATCATTCAGATAAATT+AGG | + | chr4.1:82262748-82262767 | None:intergenic | 20.0% |
| !! | TTTAGATTTGATGTTATACA+TGG | - | chr4.1:82264247-82264266 | MS.gene24978:intron | 20.0% |
| !!! | GAAATGTATTTAAGATTGAA+GGG | - | chr4.1:82263420-82263439 | MS.gene24978:intron | 20.0% |
| !!! | GTTATTTTTTTTAGTGTTTG+TGG | - | chr4.1:82264190-82264209 | MS.gene24978:intron | 20.0% |
| !!! | GTTTTAAATCAATGATTTTC+TGG | - | chr4.1:82264376-82264395 | MS.gene24978:intron | 20.0% |
| !!! | TGAAATGTATTTAAGATTGA+AGG | - | chr4.1:82263419-82263438 | MS.gene24978:intron | 20.0% |
| ! | AACTTAGCATCTAATAATCA+AGG | + | chr4.1:82263643-82263662 | None:intergenic | 25.0% |
| ! | ACACCTTAAAGACTTAAATT+AGG | + | chr4.1:82263228-82263247 | None:intergenic | 25.0% |
| ! | ATAAGCAAGATAAAAACGAA+AGG | + | chr4.1:82263290-82263309 | None:intergenic | 25.0% |
| ! | GAACCTAATTTAAGTCTTTA+AGG | - | chr4.1:82263222-82263241 | MS.gene24978:intron | 25.0% |
| ! | TAAATTAGGTTCTTAAGTGT+AGG | + | chr4.1:82263214-82263233 | None:intergenic | 25.0% |
| ! | TAAGCAAGATAAAAACGAAA+GGG | + | chr4.1:82263289-82263308 | None:intergenic | 25.0% |
| ! | TTGAAATAGTTAGATACACA+GGG | + | chr4.1:82263845-82263864 | None:intergenic | 25.0% |
| !! | TCATTCGTTTAATTGCATTT+TGG | - | chr4.1:82264276-82264295 | MS.gene24978:intron | 25.0% |
| !! | TCTTTCTTGAGTGAATTTTA+AGG | - | chr4.1:82264220-82264239 | MS.gene24978:intron | 25.0% |
| !!! | AATTCAAAGGTTTTAAGTTG+TGG | - | chr4.1:82263487-82263506 | MS.gene24978:intron | 25.0% |
| !!! | ATTCAAAGGTTTTAAGTTGT+GGG | - | chr4.1:82263488-82263507 | MS.gene24978:intron | 25.0% |
| !!! | ATTTAAGTCTTTAAGGTGTA+CGG | - | chr4.1:82263229-82263248 | MS.gene24978:intron | 25.0% |
| !!! | TACCCTTTTGATTAATTCAA+AGG | - | chr4.1:82263474-82263493 | MS.gene24978:intron | 25.0% |
| AAGCAAGATAAAAACGAAAG+GGG | + | chr4.1:82263288-82263307 | None:intergenic | 30.0% | |
| AATACTGAAAGAGTAACTCA+AGG | + | chr4.1:82263763-82263782 | None:intergenic | 30.0% | |
| ATACTGAAAGAGTAACTCAA+GGG | + | chr4.1:82263762-82263781 | None:intergenic | 30.0% | |
| ATATACCCTTTCTAACAATG+GGG | + | chr4.1:82263259-82263278 | None:intergenic | 30.0% | |
| CAATGAGTTTGACAGAAATA+GGG | - | chr4.1:82263171-82263190 | MS.gene24978:intron | 30.0% | |
| CTTGAAATAGTTAGATACAC+AGG | + | chr4.1:82263846-82263865 | None:intergenic | 30.0% | |
| GATATACCCTTTCTAACAAT+GGG | + | chr4.1:82263260-82263279 | None:intergenic | 30.0% | |
| GTCTGCAAATACAATGTTTA+AGG | - | chr4.1:82263799-82263818 | MS.gene24978:intron | 30.0% | |
| TAAGTTTCTTGTTCACATCA+GGG | + | chr4.1:82264517-82264536 | None:intergenic | 30.0% | |
| TCAATGAGTTTGACAGAAAT+AGG | - | chr4.1:82263170-82263189 | MS.gene24978:intron | 30.0% | |
| TGATATACCCTTTCTAACAA+TGG | + | chr4.1:82263261-82263280 | None:intergenic | 30.0% | |
| TGTTCAAACAGTTAGACATA+GGG | + | chr4.1:82263885-82263904 | None:intergenic | 30.0% | |
| TTAAGTTATTGTCCATGTGT+CGG | + | chr4.1:82262863-82262882 | None:intergenic | 30.0% | |
| TTGTTCAAACAGTTAGACAT+AGG | + | chr4.1:82263886-82263905 | None:intergenic | 30.0% | |
| ! | ATGCATTGTCTACAGTTTTT+CGG | + | chr4.1:82263543-82263562 | None:intergenic | 30.0% |
| ! | ATGTATTTAAGATTGAAGGG+AGG | - | chr4.1:82263423-82263442 | MS.gene24978:intron | 30.0% |
| ! | ATTGATAGATGATGAGCTTT+TGG | - | chr4.1:82262693-82262712 | MS.gene24978:intron | 30.0% |
| ! | TGTATTTAAGATTGAAGGGA+GGG | - | chr4.1:82263424-82263443 | MS.gene24978:intron | 30.0% |
| ! | TTCAAGAAGAATCGAGTTTT+GGG | + | chr4.1:82264581-82264600 | None:intergenic | 30.0% |
| ! | TTTCAAGAAGAATCGAGTTT+TGG | + | chr4.1:82264582-82264601 | None:intergenic | 30.0% |
| !! | AATGATTTTCTGGCCTTTAT+TGG | - | chr4.1:82264386-82264405 | MS.gene24978:intron | 30.0% |
| !! | ATCCATTTTGATGAACACAA+AGG | + | chr4.1:82262801-82262820 | None:intergenic | 30.0% |
| !! | GTTTAATTGCATTTTGGTGT+TGG | - | chr4.1:82264282-82264301 | MS.gene24978:intron | 30.0% |
| !! | TGTGTCTGCAATTTTTGTTT+TGG | - | chr4.1:82263595-82263614 | MS.gene24978:intron | 30.0% |
| !! | TGTTCATCAAAATGGATTGT+TGG | - | chr4.1:82262804-82262823 | MS.gene24978:intron | 30.0% |
| !! | TTTGATTAGAAGTGTCAAGA+GGG | - | chr4.1:82263127-82263146 | MS.gene24978:intron | 30.0% |
| !!! | TATTCGTTATTTTTATCCCG+CGG | + | chr4.1:82264064-82264083 | None:intergenic | 30.0% |
| !!! | TTCAAAGGTTTTAAGTTGTG+GGG | - | chr4.1:82263489-82263508 | MS.gene24978:intron | 30.0% |
| AATCTGACGTTTATCGTTGA+GGG | - | chr4.1:82263341-82263360 | MS.gene24978:intron | 35.0% | |
| ACAAATCAGAGAGAGAGATA+AGG | + | chr4.1:82262618-82262637 | None:intergenic | 35.0% | |
| CACATACTGCAAACCAATAA+AGG | + | chr4.1:82264402-82264421 | None:intergenic | 35.0% | |
| CTAAGTTTCTTGTTCACATC+AGG | + | chr4.1:82264518-82264537 | None:intergenic | 35.0% | |
| CTTCTAATCAAAGTCATGTC+TGG | + | chr4.1:82263119-82263138 | None:intergenic | 35.0% | |
| CTTGAAATTCTATGACACCA+AGG | - | chr4.1:82264595-82264614 | MS.gene24978:CDS | 35.0% | |
| GACATAGGGAAATGTAGATT+TGG | + | chr4.1:82263871-82263890 | None:intergenic | 35.0% | |
| GTCCTTTGTGTTCATCAAAA+TGG | - | chr4.1:82262796-82262815 | MS.gene24978:intron | 35.0% | |
| GTCTAACATGCTAATAGAGA+TGG | - | chr4.1:82264036-82264055 | MS.gene24978:intron | 35.0% | |
| TAATCTGACGTTTATCGTTG+AGG | - | chr4.1:82263340-82263359 | MS.gene24978:intron | 35.0% | |
| TACACCAACTCTCATTCTTT+GGG | - | chr4.1:82264092-82264111 | MS.gene24978:intron | 35.0% | |
| TATGTGATGATTGTGCTCAA+AGG | - | chr4.1:82264416-82264435 | MS.gene24978:intron | 35.0% | |
| TGTTAATGTCATTCCGATGT+GGG | + | chr4.1:82262840-82262859 | None:intergenic | 35.0% | |
| TTAAAACACTCGACAAGTTG+AGG | - | chr4.1:82264012-82264031 | MS.gene24978:intron | 35.0% | |
| TTACACCAACTCTCATTCTT+TGG | - | chr4.1:82264091-82264110 | MS.gene24978:intron | 35.0% | |
| ! | ACACTAGGTACCCTTTTTAA+AGG | - | chr4.1:82263366-82263385 | MS.gene24978:intron | 35.0% |
| ! | CACTAGGTACCCTTTTTAAA+GGG | - | chr4.1:82263367-82263386 | MS.gene24978:intron | 35.0% |
| ! | GCTCATTGTTATTCTACAGA+GGG | + | chr4.1:82263702-82263721 | None:intergenic | 35.0% |
| ! | GTATTTAAGATTGAAGGGAG+GGG | - | chr4.1:82263425-82263444 | MS.gene24978:intron | 35.0% |
| ! | TAGGGCATTCCCTTTAAAAA+GGG | + | chr4.1:82263379-82263398 | None:intergenic | 35.0% |
| !! | CTTTGATTAGAAGTGTCAAG+AGG | - | chr4.1:82263126-82263145 | MS.gene24978:intron | 35.0% |
| !!! | AGCTTTTGGTTTATGTGAAG+GGG | - | chr4.1:82262707-82262726 | MS.gene24978:intron | 35.0% |
| !!! | GAGCTTTTGGTTTATGTGAA+GGG | - | chr4.1:82262706-82262725 | MS.gene24978:intron | 35.0% |
| !!! | TGAGCTTTTGGTTTATGTGA+AGG | - | chr4.1:82262705-82262724 | MS.gene24978:intron | 35.0% |
| AAATTGCAGACACACTGTCA+AGG | + | chr4.1:82263589-82263608 | None:intergenic | 40.0% | |
| AATGAGCCGAACTCTTAACT+GGG | - | chr4.1:82263715-82263734 | MS.gene24978:intron | 40.0% | |
| AGAGGGCTTATTGCATGTTT+GGG | - | chr4.1:82262967-82262986 | MS.gene24978:intron | 40.0% | |
| ATCTGACGTTTATCGTTGAG+GGG | - | chr4.1:82263342-82263361 | MS.gene24978:intron | 40.0% | |
| ATGACATTAACACCGACACA+TGG | - | chr4.1:82262848-82262867 | MS.gene24978:intron | 40.0% | |
| ATGCCTTGTCTAAACCAGAA+AGG | + | chr4.1:82263968-82263987 | None:intergenic | 40.0% | |
| CCAAAACCCAGTTAAGAGTT+CGG | + | chr4.1:82263724-82263743 | None:intergenic | 40.0% | |
| CTCAATGCAATCACATGTGT+TGG | - | chr4.1:82263062-82263081 | MS.gene24978:intron | 40.0% | |
| GTGTACCCCATTGTTAGAAA+GGG | - | chr4.1:82263251-82263270 | MS.gene24978:intron | 40.0% | |
| GTGTTAATGTCATTCCGATG+TGG | + | chr4.1:82262841-82262860 | None:intergenic | 40.0% | |
| TCAGTCCCACCAAAAGATAT+GGG | + | chr4.1:82264449-82264468 | None:intergenic | 40.0% | |
| TGAATGATTCCATGCCTCTA+GGG | + | chr4.1:82263397-82263416 | None:intergenic | 40.0% | |
| TGCAGACAGACATGTCATAA+AGG | + | chr4.1:82263786-82263805 | None:intergenic | 40.0% | |
| TGGAAATGAAACACCCACAT+CGG | - | chr4.1:82262824-82262843 | MS.gene24978:intron | 40.0% | |
| TTATTCTACAGAGGGTAAGC+TGG | + | chr4.1:82263694-82263713 | None:intergenic | 40.0% | |
| TTTATGTGAAGGGGTTGCTA+TGG | - | chr4.1:82262716-82262735 | MS.gene24978:intron | 40.0% | |
| ! | ACGCCTTCAAATGAAAGTGT+CGG | - | chr4.1:82262938-82262957 | MS.gene24978:intron | 40.0% |
| ! | CAGTACCCATATCTTTTGGT+GGG | - | chr4.1:82264441-82264460 | MS.gene24978:intron | 40.0% |
| ! | CTAGGGCATTCCCTTTAAAA+AGG | + | chr4.1:82263380-82263399 | None:intergenic | 40.0% |
| ! | GGATCAGTACCCATATCTTT+TGG | - | chr4.1:82264437-82264456 | MS.gene24978:intron | 40.0% |
| ! | GGCTCATTGTTATTCTACAG+AGG | + | chr4.1:82263703-82263722 | None:intergenic | 40.0% |
| ! | TATGGAGAATTGGTGTCCAT+CGG | - | chr4.1:82264482-82264501 | MS.gene24978:intron | 40.0% |
| ! | TCAGTACCCATATCTTTTGG+TGG | - | chr4.1:82264440-82264459 | MS.gene24978:intron | 40.0% |
| !! | GACTTCTGAGATTTCCCATA+AGG | - | chr4.1:82263917-82263936 | MS.gene24978:intron | 40.0% |
| !! | TACACAAAGCACTGCCTTAT+GGG | + | chr4.1:82263934-82263953 | None:intergenic | 40.0% |
| !! | TTTTAAAGGGAATGCCCTAG+AGG | - | chr4.1:82263380-82263399 | MS.gene24978:intron | 40.0% |
| !!! | AGTTTTGGGAACAGACAACT+TGG | + | chr4.1:82264567-82264586 | None:intergenic | 40.0% |
| !!! | TTGCAGTTATTTTTCGCTGC+TGG | + | chr4.1:82262643-82262662 | None:intergenic | 40.0% |
| ACCAATTCTCCATAAGCTGC+TGG | + | chr4.1:82264476-82264495 | None:intergenic | 45.0% | |
| ACTCAAGGGAAATCATGTCC+AGG | + | chr4.1:82263748-82263767 | None:intergenic | 45.0% | |
| CAACTCCAACTGCAACATCA+AGG | + | chr4.1:82263453-82263472 | None:intergenic | 45.0% | |
| CAATGAGCCGAACTCTTAAC+TGG | - | chr4.1:82263714-82263733 | MS.gene24978:intron | 45.0% | |
| CAGACCCAAAGAATGAGAGT+TGG | + | chr4.1:82264099-82264118 | None:intergenic | 45.0% | |
| CAGAGGGCTTATTGCATGTT+TGG | - | chr4.1:82262966-82262985 | MS.gene24978:intron | 45.0% | |
| CTCAGTCCCACCAAAAGATA+TGG | + | chr4.1:82264450-82264469 | None:intergenic | 45.0% | |
| CTGAATGATTCCATGCCTCT+AGG | + | chr4.1:82263398-82263417 | None:intergenic | 45.0% | |
| GATAAGGAGAGAGAGACGTA+CGG | + | chr4.1:82262602-82262621 | None:intergenic | 45.0% | |
| GGTGTACCCCATTGTTAGAA+AGG | - | chr4.1:82263250-82263269 | MS.gene24978:intron | 45.0% | |
| GTACTGTAGTTGCTCCTTTC+TGG | - | chr4.1:82263951-82263970 | MS.gene24978:intron | 45.0% | |
| TATGGATGTCGATGTGTCAG+TGG | + | chr4.1:82263020-82263039 | None:intergenic | 45.0% | |
| TGCTAATAGAGATGGTACCG+CGG | - | chr4.1:82264044-82264063 | MS.gene24978:intron | 45.0% | |
| TGGGTTGTCGATGAGTTTGA+CGG | - | chr4.1:82262986-82263005 | MS.gene24978:intron | 45.0% | |
| TTATCGTTGAGGGGAACACT+AGG | - | chr4.1:82263351-82263370 | MS.gene24978:intron | 45.0% | |
| TTTACCGATGAGAGTAGCGA+CGG | + | chr4.1:82262572-82262591 | None:intergenic | 45.0% | |
| ! | CCGAACTCTTAACTGGGTTT+TGG | - | chr4.1:82263721-82263740 | MS.gene24978:intron | 45.0% |
| ! | CTTTCATTTGAAGGCGTGTC+TGG | + | chr4.1:82262935-82262954 | None:intergenic | 45.0% |
| ! | GCACCGACACTTTCATTTGA+AGG | + | chr4.1:82262944-82262963 | None:intergenic | 45.0% |
| !! | CACATGTGTTGGTGTCATGT+CGG | - | chr4.1:82263073-82263092 | MS.gene24978:intron | 45.0% |
| !! | GCTCCTTTCTGGTTTAGACA+AGG | - | chr4.1:82263962-82263981 | MS.gene24978:intron | 45.0% |
| !! | GTACACAAAGCACTGCCTTA+TGG | + | chr4.1:82263935-82263954 | None:intergenic | 45.0% |
| !!! | TCTTAACTGGGTTTTGGACC+TGG | - | chr4.1:82263727-82263746 | MS.gene24978:intron | 45.0% |
| !!! | ATTTGATTATTTAATTTATT+TGG | - | chr4.1:82264139-82264158 | MS.gene24978:intron | 5.0% |
| AGAGAGAGACGTACGGATTC+GGG | + | chr4.1:82262595-82262614 | None:intergenic | 50.0% | |
| ATCAGGGTTAAGACCACCGA+TGG | + | chr4.1:82264501-82264520 | None:intergenic | 50.0% | |
| GAGAGAGAGACGTACGGATT+CGG | + | chr4.1:82262596-82262615 | None:intergenic | 50.0% | |
| GCCAGCAGCTTATGGAGAAT+TGG | - | chr4.1:82264472-82264491 | MS.gene24978:intron | 50.0% | |
| GCTAATAGAGATGGTACCGC+GGG | - | chr4.1:82264045-82264064 | MS.gene24978:intron | 50.0% | |
| !! | GAAAGTGTCGGTGCTACAGA+GGG | - | chr4.1:82262950-82262969 | MS.gene24978:intron | 50.0% |
| !! | TGAAAGTGTCGGTGCTACAG+AGG | - | chr4.1:82262949-82262968 | MS.gene24978:intron | 50.0% |
| AAGGGAATGCCCTAGAGGCA+TGG | - | chr4.1:82263385-82263404 | MS.gene24978:intron | 55.0% | |
| ACCTTCGAGGTTGACGTTGG+TGG | + | chr4.1:82262512-82262531 | None:intergenic | 55.0% | |
| ACTGAGCAGCCAGCAGCTTA+TGG | - | chr4.1:82264464-82264483 | MS.gene24978:intron | 55.0% | |
| AGCTTCGGAGAGGATGGAAG+AGG | + | chr4.1:82262542-82262561 | None:intergenic | 55.0% | |
| GACACCTTCGAGGTTGACGT+TGG | + | chr4.1:82262515-82262534 | None:intergenic | 55.0% | |
| GGGAGCCTTGATGTTGCAGT+TGG | - | chr4.1:82263445-82263464 | MS.gene24978:intron | 55.0% | |
| TCCACCAACGTCAACCTCGA+AGG | - | chr4.1:82262508-82262527 | MS.gene24978:CDS | 55.0% | |
| TCCACCGTCGCTACTCTCAT+CGG | - | chr4.1:82262565-82262584 | MS.gene24978:CDS | 55.0% | |
| TTGGTGGAGAGGTTGAGGCA+CGG | + | chr4.1:82262496-82262515 | None:intergenic | 55.0% | |
| ! | GGAGAATTGGTGTCCATCGG+TGG | - | chr4.1:82264485-82264504 | MS.gene24978:intron | 55.0% |
| ! | TGACGTTGGTGGAGAGGTTG+AGG | + | chr4.1:82262501-82262520 | None:intergenic | 55.0% |
| !! | AAGAGGTGTCGACACCTTCG+AGG | + | chr4.1:82262525-82262544 | None:intergenic | 55.0% |
| ACCGATGAGAGTAGCGACGG+TGG | + | chr4.1:82262569-82262588 | None:intergenic | 60.0% | |
| AGCGACGGTGGAGGTAGCTT+CGG | + | chr4.1:82262557-82262576 | None:intergenic | 60.0% | |
| GATGAGAGTAGCGACGGTGG+AGG | + | chr4.1:82262566-82262585 | None:intergenic | 60.0% | |
| GGAGGTAGCTTCGGAGAGGA+TGG | + | chr4.1:82262548-82262567 | None:intergenic | 60.0% | |
| ! | CGAGGTTGACGTTGGTGGAG+AGG | + | chr4.1:82262507-82262526 | None:intergenic | 60.0% |
| CGGTGGAGGTAGCTTCGGAG+AGG | + | chr4.1:82262552-82262571 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 82262490 | 82264628 | 82262490 | ID=MS.gene24978 |
| chr4.1 | mRNA | 82262490 | 82264628 | 82262490 | ID=MS.gene24978.t1;Parent=MS.gene24978 |
| chr4.1 | exon | 82264518 | 82264628 | 82264518 | ID=MS.gene24978.t1.exon1;Parent=MS.gene24978.t1 |
| chr4.1 | CDS | 82264518 | 82264628 | 82264518 | ID=cds.MS.gene24978.t1;Parent=MS.gene24978.t1 |
| chr4.1 | exon | 82262490 | 82262702 | 82262490 | ID=MS.gene24978.t1.exon2;Parent=MS.gene24978.t1 |
| chr4.1 | CDS | 82262490 | 82262702 | 82262490 | ID=cds.MS.gene24978.t1;Parent=MS.gene24978.t1 |
| Gene Sequence |
| Protein sequence |
