Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25100.t1 | XP_013444458.1 | 97 | 235 | 7 | 0 | 1 | 235 | 1 | 235 | 1.80E-129 | 471.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25100.t1 | Q9C5D7 | 62.4 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 8.5e-80 | 298.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25100.t1 | I3SHI5 | 97.0 | 235 | 7 | 0 | 1 | 235 | 1 | 235 | 1.3e-129 | 471.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051092 | MS.gene25100 | 0.965343 | 1.76E-124 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene26463 | MS.gene25100 | PPI |
| MS.gene047856 | MS.gene25100 | PPI |
| MS.gene35069 | MS.gene25100 | PPI |
| MS.gene028389 | MS.gene25100 | PPI |
| MS.gene059423 | MS.gene25100 | PPI |
| MS.gene053535 | MS.gene25100 | PPI |
| MS.gene28756 | MS.gene25100 | PPI |
| MS.gene25100 | MS.gene053539 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25100.t1 | MTR_8g021225 | 97.021 | 235 | 7 | 0 | 1 | 235 | 1 | 235 | 5.43e-172 | 473 |
| MS.gene25100.t1 | MTR_8g101900 | 72.926 | 229 | 61 | 1 | 5 | 233 | 6 | 233 | 1.69e-110 | 317 |
| MS.gene25100.t1 | MTR_6g091680 | 69.058 | 223 | 68 | 1 | 11 | 233 | 15 | 236 | 1.59e-103 | 300 |
| MS.gene25100.t1 | MTR_4g094925 | 55.172 | 232 | 104 | 0 | 2 | 233 | 10 | 241 | 1.43e-93 | 275 |
| MS.gene25100.t1 | MTR_4g085590 | 57.965 | 226 | 95 | 0 | 8 | 233 | 20 | 245 | 2.14e-93 | 274 |
| MS.gene25100.t1 | MTR_4g094815 | 56.951 | 223 | 96 | 0 | 11 | 233 | 24 | 246 | 2.93e-90 | 266 |
| MS.gene25100.t1 | MTR_4g094898 | 57.399 | 223 | 95 | 0 | 11 | 233 | 24 | 246 | 1.77e-82 | 246 |
| MS.gene25100.t1 | MTR_4g094812 | 56.579 | 228 | 99 | 0 | 8 | 235 | 19 | 246 | 2.80e-81 | 243 |
| MS.gene25100.t1 | MTR_4g094368 | 54.018 | 224 | 100 | 2 | 11 | 232 | 5 | 227 | 1.32e-79 | 238 |
| MS.gene25100.t1 | MTR_4g094925 | 54.229 | 201 | 92 | 0 | 33 | 233 | 10 | 210 | 2.69e-78 | 234 |
| MS.gene25100.t1 | MTR_4g094898 | 58.378 | 185 | 77 | 0 | 49 | 233 | 1 | 185 | 5.97e-68 | 207 |
| MS.gene25100.t1 | MTR_2g070410 | 40.092 | 217 | 120 | 4 | 17 | 233 | 91 | 297 | 8.35e-48 | 159 |
| MS.gene25100.t1 | MTR_2g070410 | 40.698 | 172 | 98 | 2 | 17 | 188 | 91 | 258 | 3.32e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25100.t1 | AT4G26220 | 62.389 | 226 | 84 | 1 | 10 | 235 | 8 | 232 | 1.01e-103 | 300 |
| MS.gene25100.t1 | AT4G34050 | 57.522 | 226 | 96 | 0 | 8 | 233 | 32 | 257 | 1.28e-92 | 273 |
| MS.gene25100.t1 | AT4G34050 | 57.522 | 226 | 96 | 0 | 8 | 233 | 59 | 284 | 1.29e-92 | 274 |
| MS.gene25100.t1 | AT1G67980 | 54.867 | 226 | 96 | 3 | 10 | 233 | 9 | 230 | 2.24e-80 | 241 |
| MS.gene25100.t1 | AT1G24735 | 53.304 | 227 | 100 | 5 | 10 | 233 | 15 | 238 | 8.32e-76 | 229 |
| MS.gene25100.t1 | AT1G67990 | 51.327 | 226 | 105 | 3 | 10 | 233 | 9 | 231 | 3.43e-73 | 223 |
| MS.gene25100.t1 | AT1G24735 | 43.525 | 278 | 100 | 5 | 10 | 233 | 15 | 289 | 5.74e-68 | 211 |
| MS.gene25100.t1 | AT1G24735 | 54.144 | 181 | 79 | 3 | 54 | 233 | 16 | 193 | 1.49e-63 | 196 |
| MS.gene25100.t1 | AT1G67980 | 49.697 | 165 | 79 | 2 | 69 | 233 | 2 | 162 | 1.70e-47 | 154 |
| MS.gene25100.t1 | AT3G61990 | 40.000 | 205 | 113 | 4 | 29 | 233 | 95 | 289 | 3.03e-47 | 158 |
| MS.gene25100.t1 | AT3G62000 | 37.561 | 205 | 121 | 3 | 29 | 233 | 80 | 277 | 1.03e-45 | 154 |
| MS.gene25100.t1 | AT4G34050 | 54.098 | 122 | 56 | 0 | 112 | 233 | 25 | 146 | 1.10e-41 | 139 |
| MS.gene25100.t1 | AT3G62000 | 35.897 | 195 | 118 | 3 | 29 | 223 | 80 | 267 | 5.31e-38 | 135 |
Find 43 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTGATGCGGGTCAGCTAA+TGG | 0.291962 | 8.4:+72464796 | MS.gene25100:CDS |
| AAGAGACTCTCAAAGAATTA+AGG | 0.322243 | 8.4:+72464081 | MS.gene25100:CDS |
| TACTTATATTAGGCACTTCA+TGG | 0.334325 | 8.4:+72464766 | MS.gene25100:intron |
| ATGCTGATAAACATAATTAC+TGG | 0.350388 | 8.4:+72467209 | MS.gene25100:CDS |
| TATCTATGATAACACCCTTT+GGG | 0.356227 | 8.4:+72467279 | MS.gene25100:CDS |
| CTTATTAAACTGATTAAGAT+TGG | 0.375961 | 8.4:+72467247 | MS.gene25100:CDS |
| CCCATTAGCTGACCCGCATC+AGG | 0.377125 | 8.4:-72464797 | None:intergenic |
| TTATCTATGATAACACCCTT+TGG | 0.398433 | 8.4:+72467278 | MS.gene25100:CDS |
| TCTAAGAGTTTATCAAGAAC+TGG | 0.401004 | 8.4:-72466599 | None:intergenic |
| GTTGTTGTAGATCATAGCTT+TGG | 0.404092 | 8.4:+72466484 | MS.gene25100:intron |
| ATGCAAACCTTTCCATCATC+AGG | 0.418514 | 8.4:-72464908 | None:intergenic |
| CCTGATGCGGGTCAGCTAAT+GGG | 0.423982 | 8.4:+72464797 | MS.gene25100:CDS |
| GTGATGGTTTCACTATTTGT+AGG | 0.441997 | 8.4:+72467431 | MS.gene25100:CDS |
| GAAATTTGTCTTGCTTCAAT+TGG | 0.451713 | 8.4:+72467409 | MS.gene25100:CDS |
| GGATCTAGAAGAGCTTCTTC+AGG | 0.472570 | 8.4:-72467319 | None:intergenic |
| TTATCAAGAACTGGTAAAGC+TGG | 0.473174 | 8.4:-72466590 | None:intergenic |
| ATTAAACTGATTAAGATTGG+TGG | 0.498414 | 8.4:+72467250 | MS.gene25100:CDS |
| GCACTTAACATTCCTGATGA+TGG | 0.504313 | 8.4:+72464896 | MS.gene25100:CDS |
| TTTGGGGTGGAACAGTTGCA+TGG | 0.512737 | 8.4:+72467296 | MS.gene25100:CDS |
| TTGAGAGTCTCTTGTTCTCG+TGG | 0.517195 | 8.4:-72464071 | None:intergenic |
| TGTCTTGCTTCAATTGGTGA+TGG | 0.520428 | 8.4:+72467415 | MS.gene25100:CDS |
| ATGGGCACTCACCCTGATGC+GGG | 0.527395 | 8.4:+72464785 | MS.gene25100:CDS |
| TGAGAGTCTCTTGTTCTCGT+GGG | 0.528224 | 8.4:-72464070 | None:intergenic |
| TGCAACTGTTCCACCCCAAA+GGG | 0.535428 | 8.4:-72467293 | None:intergenic |
| ACTTATATTAGGCACTTCAT+GGG | 0.538445 | 8.4:+72464767 | MS.gene25100:intron |
| TAACATTCCTGATGATGGAA+AGG | 0.541727 | 8.4:+72464901 | MS.gene25100:CDS |
| AAGAAGCTCTTCTAGATCCC+AGG | 0.542243 | 8.4:+72467323 | MS.gene25100:CDS |
| CATGGGCACTCACCCTGATG+CGG | 0.547301 | 8.4:+72464784 | MS.gene25100:CDS |
| AACGTAGCAAGTAAATATGA+TGG | 0.548955 | 8.4:+72463888 | MS.gene25100:CDS |
| TTGTTCTCGTGGGTAAACAC+TGG | 0.550287 | 8.4:-72464060 | None:intergenic |
| ATCTATGATAACACCCTTTG+GGG | 0.551041 | 8.4:+72467280 | MS.gene25100:CDS |
| TCAGTTTAATAAGCCTCTCA+TGG | 0.553102 | 8.4:-72467237 | None:intergenic |
| GACCGAAAAGCTTATGAAGT+AGG | 0.557394 | 8.4:+72466512 | MS.gene25100:CDS |
| ATGCAACTGTTCCACCCCAA+AGG | 0.561278 | 8.4:-72467294 | None:intergenic |
| ATGATGGTATATTGCAGAGT+GGG | 0.565378 | 8.4:+72463904 | MS.gene25100:CDS |
| ATTACTGGAATTACCATGAG+AGG | 0.588635 | 8.4:+72467224 | MS.gene25100:CDS |
| TATGATAACACCCTTTGGGG+TGG | 0.607459 | 8.4:+72467283 | MS.gene25100:CDS |
| CCATTAGCTGACCCGCATCA+GGG | 0.621236 | 8.4:-72464796 | None:intergenic |
| ATGTTTATCAGCATCAACAA+AGG | 0.646431 | 8.4:-72467200 | None:intergenic |
| TATGATGGTATATTGCAGAG+TGG | 0.646886 | 8.4:+72463903 | MS.gene25100:CDS |
| GTACATAGGGTAGCTTGCAG+TGG | 0.650373 | 8.4:-72464108 | None:intergenic |
| GCAGAGTGGGAATTTGACCA+AGG | 0.656131 | 8.4:+72463917 | MS.gene25100:CDS |
| CAGGAATGTTAAGTGCTGTG+AGG | 0.701760 | 8.4:-72464889 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAAAATAAAATTATTTTT+TGG | + | chr8.4:72464204-72464223 | MS.gene25100:intron | 0.0% |
| !!! | ATAATATAAATTATTTTATT+TGG | + | chr8.4:72464307-72464326 | MS.gene25100:intron | 0.0% |
| !!! | ATATAAATTATTTTATTTGG+AGG | + | chr8.4:72464310-72464329 | MS.gene25100:intron | 10.0% |
| !!! | ATTATATTTTTCTAATTAGT+TGG | + | chr8.4:72463966-72463985 | MS.gene25100:intron | 10.0% |
| !!! | ATTTTTTTTATTTAAAACAG+CGG | + | chr8.4:72464974-72464993 | MS.gene25100:intron | 10.0% |
| !! | AAAGATATAATTCCTTTATA+TGG | - | chr8.4:72464440-72464459 | None:intergenic | 15.0% |
| !! | AATACATTAATTAAATGACA+TGG | - | chr8.4:72465796-72465815 | None:intergenic | 15.0% |
| !! | ATTAATTATGTCAAAAAGTA+TGG | + | chr8.4:72464150-72464169 | MS.gene25100:intron | 15.0% |
| !! | TAATTAAAAACTATGAAGTA+TGG | + | chr8.4:72466883-72466902 | MS.gene25100:intron | 15.0% |
| !! | TCTTATCTATATTAATACAA+TGG | + | chr8.4:72466228-72466247 | MS.gene25100:intron | 15.0% |
| !!! | GTTTTTTAACTTTATTATGT+TGG | + | chr8.4:72463943-72463962 | MS.gene25100:intron | 15.0% |
| !!! | TTGAACAATTCTTTTATAAA+TGG | - | chr8.4:72465549-72465568 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTGTTTTAGTTT+CGG | - | chr8.4:72465291-72465310 | None:intergenic | 15.0% |
| !!! | TTTTAGTTAATAATGGAAAA+AGG | - | chr8.4:72464336-72464355 | None:intergenic | 15.0% |
| !! | AACAATACTGAAAAATTGAA+CGG | - | chr8.4:72466400-72466419 | None:intergenic | 20.0% |
| !! | ATCATTAACATGTACATATT+TGG | - | chr8.4:72465439-72465458 | None:intergenic | 20.0% |
| !! | CTTATTAAACTGATTAAGAT+TGG | + | chr8.4:72467247-72467266 | MS.gene25100:CDS | 20.0% |
| !! | TTATATGCAAACATAATCAA+TGG | + | chr8.4:72464620-72464639 | MS.gene25100:intron | 20.0% |
| !!! | AAAATCTTTTACTACAATTG+TGG | + | chr8.4:72466795-72466814 | MS.gene25100:intron | 20.0% |
| !!! | AATTGTAGTAAAAGATTTTG+AGG | - | chr8.4:72466794-72466813 | None:intergenic | 20.0% |
| !!! | ACAAGGTTAAATTTTTACTA+TGG | - | chr8.4:72465416-72465435 | None:intergenic | 20.0% |
| !!! | ATATACTAACACAAAACTTT+TGG | - | chr8.4:72464032-72464051 | None:intergenic | 20.0% |
| !!! | TAATACAATGGTTCTATTTA+TGG | + | chr8.4:72466240-72466259 | MS.gene25100:intron | 20.0% |
| !!! | TCAAAATTTTCATCATTTGA+AGG | - | chr8.4:72467175-72467194 | None:intergenic | 20.0% |
| ! | AAAAATACACATGGATATGT+TGG | - | chr8.4:72464946-72464965 | None:intergenic | 25.0% |
| ! | AAAACTATGAAGTATGGATA+TGG | + | chr8.4:72466889-72466908 | MS.gene25100:intron | 25.0% |
| ! | AACTGTACAAGAAAAATCTA+AGG | - | chr8.4:72465462-72465481 | None:intergenic | 25.0% |
| ! | AGATGTAATATGATAACTTG+AGG | + | chr8.4:72464559-72464578 | MS.gene25100:intron | 25.0% |
| ! | AGCTAATAAATTACGTACAT+AGG | - | chr8.4:72464125-72464144 | None:intergenic | 25.0% |
| ! | ATGCTGATAAACATAATTAC+TGG | + | chr8.4:72467209-72467228 | MS.gene25100:CDS | 25.0% |
| ! | ATTAAACTGATTAAGATTGG+TGG | + | chr8.4:72467250-72467269 | MS.gene25100:CDS | 25.0% |
| ! | ATTATGCATGTTCCATATAA+AGG | + | chr8.4:72464425-72464444 | MS.gene25100:intron | 25.0% |
| ! | CAACCTCTTAAATTAATCAA+GGG | - | chr8.4:72464375-72464394 | None:intergenic | 25.0% |
| ! | CTACTTAACCAAGAAAAATA+AGG | - | chr8.4:72466042-72466061 | None:intergenic | 25.0% |
| ! | CTTCATACATTAAAAACCAA+AGG | + | chr8.4:72467055-72467074 | MS.gene25100:intron | 25.0% |
| ! | GCTAAAAAGACAATTGAAAT+TGG | + | chr8.4:72464842-72464861 | MS.gene25100:CDS | 25.0% |
| ! | GCTAATAAATTACGTACATA+GGG | - | chr8.4:72464124-72464143 | None:intergenic | 25.0% |
| ! | TAAAGTTAAAAAACGAACCT+TGG | - | chr8.4:72463937-72463956 | None:intergenic | 25.0% |
| ! | TCCAAAACATAAACAAGTTT+AGG | - | chr8.4:72466650-72466669 | None:intergenic | 25.0% |
| ! | TGCATAATCTAATTGAAATG+CGG | - | chr8.4:72464413-72464432 | None:intergenic | 25.0% |
| ! | TGCTAGAAATTTACTTCATA+AGG | + | chr8.4:72466309-72466328 | MS.gene25100:intron | 25.0% |
| ! | TTAACATTAACTATCCAACT+TGG | - | chr8.4:72464586-72464605 | None:intergenic | 25.0% |
| ! | TTAGATCAAGTTCAAATCTA+GGG | - | chr8.4:72465391-72465410 | None:intergenic | 25.0% |
| !! | AACATATCCATGTGTATTTT+TGG | + | chr8.4:72464945-72464964 | MS.gene25100:intron | 25.0% |
| !! | AGAGATAGATAATTTTCCTT+TGG | - | chr8.4:72467074-72467093 | None:intergenic | 25.0% |
| !! | CTCAAAGATAACAATTTTGA+TGG | - | chr8.4:72464234-72464253 | None:intergenic | 25.0% |
| !! | TTTCTAGTGGAAACAATATT+TGG | - | chr8.4:72465754-72465773 | None:intergenic | 25.0% |
| !!! | TCTCTTTACCTTATTTTTCT+TGG | + | chr8.4:72466031-72466050 | MS.gene25100:intron | 25.0% |
| !!! | TTGTTTAGAATTCACCTTTT+AGG | + | chr8.4:72466067-72466086 | MS.gene25100:intron | 25.0% |
| !!! | TTTCATTTGATTTTCATGAG+TGG | - | chr8.4:72465365-72465384 | None:intergenic | 25.0% |
| AAAGTTTGCGATAAAAAGTC+AGG | - | chr8.4:72465012-72465031 | None:intergenic | 30.0% | |
| AACATGTACATATTTGGACA+AGG | - | chr8.4:72465433-72465452 | None:intergenic | 30.0% | |
| AACGTAGCAAGTAAATATGA+TGG | + | chr8.4:72463888-72463907 | MS.gene25100:CDS | 30.0% | |
| AAGAGACTCTCAAAGAATTA+AGG | + | chr8.4:72464081-72464100 | MS.gene25100:CDS | 30.0% | |
| AAGGTGAATTCTAAACAACT+AGG | - | chr8.4:72466065-72466084 | None:intergenic | 30.0% | |
| ACTCCGATTTATATGAGAAA+AGG | + | chr8.4:72465684-72465703 | MS.gene25100:intron | 30.0% | |
| ACTTATATTAGGCACTTCAT+GGG | + | chr8.4:72464767-72464786 | MS.gene25100:intron | 30.0% | |
| AGAAAAGGGTCATAGTAATT+CGG | + | chr8.4:72465699-72465718 | MS.gene25100:intron | 30.0% | |
| AGGACTTCCATTCATAAAAA+AGG | + | chr8.4:72466532-72466551 | MS.gene25100:CDS | 30.0% | |
| ATACTGAAAAATTGAACGGT+TGG | - | chr8.4:72466396-72466415 | None:intergenic | 30.0% | |
| ATCCCAGGAGAAAAAAAATA+AGG | + | chr8.4:72467338-72467357 | MS.gene25100:CDS | 30.0% | |
| ATGTTTATCAGCATCAACAA+AGG | - | chr8.4:72467203-72467222 | None:intergenic | 30.0% | |
| CAACCCTTGATTAATTTAAG+AGG | + | chr8.4:72464369-72464388 | MS.gene25100:intron | 30.0% | |
| CATAATCTAATTGAAATGCG+GGG | - | chr8.4:72464411-72464430 | None:intergenic | 30.0% | |
| CCAACCTCTTAAATTAATCA+AGG | - | chr8.4:72464376-72464395 | None:intergenic | 30.0% | |
| CCTTGATTAATTTAAGAGGT+TGG | + | chr8.4:72464373-72464392 | MS.gene25100:intron | 30.0% | |
| CGTATATTATGCAAGGTTTA+AGG | + | chr8.4:72465943-72465962 | MS.gene25100:intron | 30.0% | |
| CTCCGATTTATATGAGAAAA+GGG | + | chr8.4:72465685-72465704 | MS.gene25100:intron | 30.0% | |
| CTTAGATCAAGTTCAAATCT+AGG | - | chr8.4:72465392-72465411 | None:intergenic | 30.0% | |
| GAAATTTGTCTTGCTTCAAT+TGG | + | chr8.4:72467409-72467428 | MS.gene25100:CDS | 30.0% | |
| GCATAATCTAATTGAAATGC+GGG | - | chr8.4:72464412-72464431 | None:intergenic | 30.0% | |
| GTTTCGCTTTAATATCTCTT+TGG | - | chr8.4:72465189-72465208 | None:intergenic | 30.0% | |
| TACTTATATTAGGCACTTCA+TGG | + | chr8.4:72464766-72464785 | MS.gene25100:intron | 30.0% | |
| TAGATCAAGTTCAAATCTAG+GGG | - | chr8.4:72465390-72465409 | None:intergenic | 30.0% | |
| TATCTATGATAACACCCTTT+GGG | + | chr8.4:72467279-72467298 | MS.gene25100:CDS | 30.0% | |
| TCTAAGAGTTTATCAAGAAC+TGG | - | chr8.4:72466602-72466621 | None:intergenic | 30.0% | |
| TTATCTATGATAACACCCTT+TGG | + | chr8.4:72467278-72467297 | MS.gene25100:CDS | 30.0% | |
| TTCAAAAGGGAAAATGCTTA+AGG | - | chr8.4:72465162-72465181 | None:intergenic | 30.0% | |
| ! | ATTGAAATTGGAGTTTTCAC+TGG | + | chr8.4:72464854-72464873 | MS.gene25100:CDS | 30.0% |
| ! | GACCCTTTTCTCATATAAAT+CGG | - | chr8.4:72465690-72465709 | None:intergenic | 30.0% |
| ! | GGTTTTTAATGTATGAAGCA+TGG | - | chr8.4:72467053-72467072 | None:intergenic | 30.0% |
| ! | TTTTTCTTGTACAGTTGTAG+AGG | + | chr8.4:72465466-72465485 | MS.gene25100:intron | 30.0% |
| !! | AAGCATTTTCCCTTTTGAAA+AGG | + | chr8.4:72465163-72465182 | MS.gene25100:intron | 30.0% |
| !! | GCCTAAACTTGTTTATGTTT+TGG | + | chr8.4:72466646-72466665 | MS.gene25100:intron | 30.0% |
| !! | GTGTCTTCATTATTTCTAGT+AGG | + | chr8.4:72467101-72467120 | MS.gene25100:intron | 30.0% |
| !!! | GTTTTTTGTTTTAGTTTCGG+TGG | - | chr8.4:72465288-72465307 | None:intergenic | 30.0% |
| !!! | TGCCTTATTTTTTTTCTCCT+GGG | - | chr8.4:72467343-72467362 | None:intergenic | 30.0% |
| !!! | TTGCCTTATTTTTTTTCTCC+TGG | - | chr8.4:72467344-72467363 | None:intergenic | 30.0% |
| AAAAGGGTCATAGTAATTCG+GGG | + | chr8.4:72465701-72465720 | MS.gene25100:intron | 35.0% | |
| AAACCTTGCATAATATACGC+AGG | - | chr8.4:72465942-72465961 | None:intergenic | 35.0% | |
| AAGGTGAATGAGTTAGAAAC+TGG | + | chr8.4:72466328-72466347 | MS.gene25100:intron | 35.0% | |
| AATCCTGCGTATATTATGCA+AGG | + | chr8.4:72465936-72465955 | MS.gene25100:intron | 35.0% | |
| ACCTCTTAGATGTTTAGAAG+TGG | - | chr8.4:72465334-72465353 | None:intergenic | 35.0% | |
| AGCGAAACAAACATAGTAGA+AGG | + | chr8.4:72465201-72465220 | MS.gene25100:intron | 35.0% | |
| ATCTATGATAACACCCTTTG+GGG | + | chr8.4:72467280-72467299 | MS.gene25100:CDS | 35.0% | |
| ATGATGGTATATTGCAGAGT+GGG | + | chr8.4:72463904-72463923 | MS.gene25100:CDS | 35.0% | |
| ATTACTGGAATTACCATGAG+AGG | + | chr8.4:72467224-72467243 | MS.gene25100:CDS | 35.0% | |
| CAACACACATGTATGGTAAA+AGG | - | chr8.4:72464668-72464687 | None:intergenic | 35.0% | |
| CTAGTAGGCAATTATGTTGT+TGG | + | chr8.4:72467116-72467135 | MS.gene25100:intron | 35.0% | |
| CTTCCATTCATAAAAAAGGC+TGG | + | chr8.4:72466536-72466555 | MS.gene25100:CDS | 35.0% | |
| GAAAAGGGTCATAGTAATTC+GGG | + | chr8.4:72465700-72465719 | MS.gene25100:intron | 35.0% | |
| GAGTTAAATCACCTTTACAC+TGG | - | chr8.4:72466455-72466474 | None:intergenic | 35.0% | |
| GATCTACAACAACCATACAA+TGG | - | chr8.4:72466477-72466496 | None:intergenic | 35.0% | |
| GATTGATAGAGTCGAAATTG+TGG | + | chr8.4:72466739-72466758 | MS.gene25100:intron | 35.0% | |
| GCAAGATGTATGATGATTTG+AGG | - | chr8.4:72464538-72464557 | None:intergenic | 35.0% | |
| GGTGATTTAACTCCATTGTA+TGG | + | chr8.4:72466462-72466481 | MS.gene25100:intron | 35.0% | |
| GTGATGGTTTCACTATTTGT+AGG | + | chr8.4:72467431-72467450 | MS.gene25100:CDS | 35.0% | |
| GTTGTTGTAGATCATAGCTT+TGG | + | chr8.4:72466484-72466503 | MS.gene25100:intron | 35.0% | |
| TATGATGGTATATTGCAGAG+TGG | + | chr8.4:72463903-72463922 | MS.gene25100:CDS | 35.0% | |
| TCAGTTTAATAAGCCTCTCA+TGG | - | chr8.4:72467240-72467259 | None:intergenic | 35.0% | |
| TCGTACACCAAAAATACACA+TGG | - | chr8.4:72464955-72464974 | None:intergenic | 35.0% | |
| TTATCAAGAACTGGTAAAGC+TGG | - | chr8.4:72466593-72466612 | None:intergenic | 35.0% | |
| TTTCCACTAGAAATCGTACT+CGG | + | chr8.4:72465761-72465780 | MS.gene25100:intron | 35.0% | |
| ! | ATGATGATTTGAGGTGCAAA+CGG | - | chr8.4:72464529-72464548 | None:intergenic | 35.0% |
| ! | CTTTTACCATACATGTGTGT+TGG | + | chr8.4:72464666-72464685 | MS.gene25100:intron | 35.0% |
| ! | GTCCTACTTCATAAGCTTTT+CGG | - | chr8.4:72466517-72466536 | None:intergenic | 35.0% |
| ! | GTGGATTTTCAATTGCATAG+CGG | + | chr8.4:72465094-72465113 | MS.gene25100:intron | 35.0% |
| !! | ACCTTTTAGGTGAATAAGTG+AGG | + | chr8.4:72466080-72466099 | MS.gene25100:intron | 35.0% |
| !! | ATCTCTTTGGCCTTTTCAAA+AGG | - | chr8.4:72465176-72465195 | None:intergenic | 35.0% |
| !! | TAACATTCCTGATGATGGAA+AGG | + | chr8.4:72464901-72464920 | MS.gene25100:CDS | 35.0% |
| !! | TCTCTTTGGCCTTTTCAAAA+GGG | - | chr8.4:72465175-72465194 | None:intergenic | 35.0% |
| !!! | ACACCAGCCTTTTTTATGAA+TGG | - | chr8.4:72466542-72466561 | None:intergenic | 35.0% |
| AAACCAATCACATCTCATGC+TGG | + | chr8.4:72465047-72465066 | MS.gene25100:intron | 40.0% | |
| AACTGCGAACCTTTATGTTG+TGG | + | chr8.4:72466697-72466716 | MS.gene25100:intron | 40.0% | |
| ACATTGCATAATGTGTGCAG+GGG | - | chr8.4:72465981-72466000 | None:intergenic | 40.0% | |
| AGACATTGCATAATGTGTGC+AGG | - | chr8.4:72465983-72466002 | None:intergenic | 40.0% | |
| ATGCAAACCTTTCCATCATC+AGG | - | chr8.4:72464911-72464930 | None:intergenic | 40.0% | |
| GACATTGCATAATGTGTGCA+GGG | - | chr8.4:72465982-72466001 | None:intergenic | 40.0% | |
| GACCGAAAAGCTTATGAAGT+AGG | + | chr8.4:72466512-72466531 | MS.gene25100:CDS | 40.0% | |
| GCACTTAACATTCCTGATGA+TGG | + | chr8.4:72464896-72464915 | MS.gene25100:CDS | 40.0% | |
| GCCACTTCTAAACATCTAAG+AGG | + | chr8.4:72465330-72465349 | MS.gene25100:intron | 40.0% | |
| GCCTCACTTATTCACCTAAA+AGG | - | chr8.4:72466084-72466103 | None:intergenic | 40.0% | |
| TAAGAGGTTGGACCTTAAGT+CGG | + | chr8.4:72464385-72464404 | MS.gene25100:intron | 40.0% | |
| TATGAAGCATGGATACTCCT+CGG | - | chr8.4:72467042-72467061 | None:intergenic | 40.0% | |
| TCTCGTGAGCTTAACTAAGT+TGG | - | chr8.4:72466009-72466028 | None:intergenic | 40.0% | |
| TGATAACTTGAGGTCCAAGT+TGG | + | chr8.4:72464569-72464588 | MS.gene25100:intron | 40.0% | |
| TGCAATTGCATCCAGTGTAA+AGG | + | chr8.4:72466441-72466460 | MS.gene25100:intron | 40.0% | |
| TGTCTTGCTTCAATTGGTGA+TGG | + | chr8.4:72467415-72467434 | MS.gene25100:CDS | 40.0% | |
| TTCCACTAGAAATCGTACTC+GGG | + | chr8.4:72465762-72465781 | MS.gene25100:intron | 40.0% | |
| ! | ACTTCATAAGCTTTTCGGTC+TGG | - | chr8.4:72466512-72466531 | None:intergenic | 40.0% |
| ! | CGCATTTTGCCACAACATAA+AGG | - | chr8.4:72466709-72466728 | None:intergenic | 40.0% |
| !! | AAAAATGGGATAGTGGGTAG+TGG | + | chr8.4:72465075-72465094 | MS.gene25100:intron | 40.0% |
| AAGAAGCTCTTCTAGATCCC+AGG | + | chr8.4:72467323-72467342 | MS.gene25100:CDS | 45.0% | |
| GAGTTGCCAACACACATGTA+TGG | - | chr8.4:72464675-72464694 | None:intergenic | 45.0% | |
| GGATCTAGAAGAGCTTCTTC+AGG | - | chr8.4:72467322-72467341 | None:intergenic | 45.0% | |
| TGAGAGTCTCTTGTTCTCGT+GGG | - | chr8.4:72464073-72464092 | None:intergenic | 45.0% | |
| TTGAGAGTCTCTTGTTCTCG+TGG | - | chr8.4:72464074-72464093 | None:intergenic | 45.0% | |
| TTGTTCTCGTGGGTAAACAC+TGG | - | chr8.4:72464063-72464082 | None:intergenic | 45.0% | |
| ! | AGGTGAATAAGTGAGGCGTT+CGG | + | chr8.4:72466087-72466106 | MS.gene25100:intron | 45.0% |
| ! | CAGGAATGTTAAGTGCTGTG+AGG | - | chr8.4:72464892-72464911 | None:intergenic | 45.0% |
| ! | TATGATAACACCCTTTGGGG+TGG | + | chr8.4:72467283-72467302 | MS.gene25100:CDS | 45.0% |
| !! | ACCCACTATCCCATTTTTGC+CGG | - | chr8.4:72465073-72465092 | None:intergenic | 45.0% |
| !! | ATTATTAACTAAAAAAAATT+AGG | + | chr8.4:72464342-72464361 | MS.gene25100:intron | 5.0% |
| !! | TTATTATTATTACTTATATT+AGG | + | chr8.4:72464756-72464775 | MS.gene25100:intron | 5.0% |
| !!! | TAATTTTTTTTAGTTAATAA+TGG | - | chr8.4:72464343-72464362 | None:intergenic | 5.0% |
| ACACGACAAGTGTCTGACAC+CGG | + | chr8.4:72467004-72467023 | MS.gene25100:intron | 50.0% | |
| ATGCAACTGTTCCACCCCAA+AGG | - | chr8.4:72467297-72467316 | None:intergenic | 50.0% | |
| CAATCACATCTCATGCTGGC+CGG | + | chr8.4:72465051-72465070 | MS.gene25100:intron | 50.0% | |
| GCAGAGTGGGAATTTGACCA+AGG | + | chr8.4:72463917-72463936 | MS.gene25100:CDS | 50.0% | |
| GCCGGCAAAAATGGGATAGT+GGG | + | chr8.4:72465069-72465088 | MS.gene25100:intron | 50.0% | |
| TCATGCTGGCCGGCAAAAAT+GGG | + | chr8.4:72465061-72465080 | MS.gene25100:intron | 50.0% | |
| TCCTCGGATAAGACGTGTTC+CGG | - | chr8.4:72467026-72467045 | None:intergenic | 50.0% | |
| TGCAACTGTTCCACCCCAAA+GGG | - | chr8.4:72467296-72467315 | None:intergenic | 50.0% | |
| ! | AAGGTTTAAGGTTCGAGCCC+CGG | + | chr8.4:72465955-72465974 | MS.gene25100:intron | 50.0% |
| ! | AGCCCGAGTACGATTTCTAG+TGG | - | chr8.4:72465767-72465786 | None:intergenic | 50.0% |
| ! | GGTGAATAAGTGAGGCGTTC+GGG | + | chr8.4:72466088-72466107 | MS.gene25100:intron | 50.0% |
| ! | GTACATAGGGTAGCTTGCAG+TGG | - | chr8.4:72464111-72464130 | None:intergenic | 50.0% |
| ! | GTGAATAAGTGAGGCGTTCG+GGG | + | chr8.4:72466089-72466108 | MS.gene25100:intron | 50.0% |
| ! | TTTGGGGTGGAACAGTTGCA+TGG | + | chr8.4:72467296-72467315 | MS.gene25100:CDS | 50.0% |
| ACCGGAACACGTCTTATCCG+AGG | + | chr8.4:72467022-72467041 | MS.gene25100:intron | 55.0% | |
| CCATTAGCTGACCCGCATCA+GGG | - | chr8.4:72464799-72464818 | None:intergenic | 55.0% | |
| CCTGATGCGGGTCAGCTAAT+GGG | + | chr8.4:72464797-72464816 | MS.gene25100:CDS | 55.0% | |
| CGGCCAGCATGAGATGTGAT+TGG | - | chr8.4:72465053-72465072 | None:intergenic | 55.0% | |
| CTCATGCTGGCCGGCAAAAA+TGG | + | chr8.4:72465060-72465079 | MS.gene25100:intron | 55.0% | |
| GGCCGGCAAAAATGGGATAG+TGG | + | chr8.4:72465068-72465087 | MS.gene25100:intron | 55.0% | |
| TGCATAATGTGTGCAGGGGC+CGG | - | chr8.4:72465977-72465996 | None:intergenic | 55.0% | |
| TGTCGTGTCCGACGTTGACA+CGG | - | chr8.4:72466992-72467011 | None:intergenic | 55.0% | |
| ! | TGAAATGCGGGGCCGACTTA+AGG | - | chr8.4:72464400-72464419 | None:intergenic | 55.0% |
| ATGGGCACTCACCCTGATGC+GGG | + | chr8.4:72464785-72464804 | MS.gene25100:CDS | 60.0% | |
| CATAATGTGTGCAGGGGCCG+GGG | - | chr8.4:72465975-72465994 | None:intergenic | 60.0% | |
| CATGGGCACTCACCCTGATG+CGG | + | chr8.4:72464784-72464803 | MS.gene25100:CDS | 60.0% | |
| CCCATTAGCTGACCCGCATC+AGG | - | chr8.4:72464800-72464819 | None:intergenic | 60.0% | |
| CCCTGATGCGGGTCAGCTAA+TGG | + | chr8.4:72464796-72464815 | MS.gene25100:CDS | 60.0% | |
| GCATAATGTGTGCAGGGGCC+GGG | - | chr8.4:72465976-72465995 | None:intergenic | 60.0% | |
| TGTCCGACGTTGACACGGCA+CGG | - | chr8.4:72466987-72467006 | None:intergenic | 60.0% | |
| TGTCCGTGCCGTGTCAACGT+CGG | + | chr8.4:72466981-72467000 | MS.gene25100:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 72463882 | 72467465 | 72463882 | ID=MS.gene25100 |
| chr8.4 | mRNA | 72463882 | 72467465 | 72463882 | ID=MS.gene25100.t1;Parent=MS.gene25100 |
| chr8.4 | exon | 72463882 | 72463938 | 72463882 | ID=MS.gene25100.t1.exon1;Parent=MS.gene25100.t1 |
| chr8.4 | CDS | 72463882 | 72463938 | 72463882 | ID=cds.MS.gene25100.t1;Parent=MS.gene25100.t1 |
| chr8.4 | exon | 72464047 | 72464126 | 72464047 | ID=MS.gene25100.t1.exon2;Parent=MS.gene25100.t1 |
| chr8.4 | CDS | 72464047 | 72464126 | 72464047 | ID=cds.MS.gene25100.t1;Parent=MS.gene25100.t1 |
| chr8.4 | exon | 72464778 | 72464922 | 72464778 | ID=MS.gene25100.t1.exon3;Parent=MS.gene25100.t1 |
| chr8.4 | CDS | 72464778 | 72464922 | 72464778 | ID=cds.MS.gene25100.t1;Parent=MS.gene25100.t1 |
| chr8.4 | exon | 72466494 | 72466625 | 72466494 | ID=MS.gene25100.t1.exon4;Parent=MS.gene25100.t1 |
| chr8.4 | CDS | 72466494 | 72466625 | 72466494 | ID=cds.MS.gene25100.t1;Parent=MS.gene25100.t1 |
| chr8.4 | exon | 72467172 | 72467465 | 72467172 | ID=MS.gene25100.t1.exon5;Parent=MS.gene25100.t1 |
| chr8.4 | CDS | 72467172 | 72467465 | 72467172 | ID=cds.MS.gene25100.t1;Parent=MS.gene25100.t1 |
| Gene Sequence |
| Protein sequence |
