Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25240.t1 | XP_013450314.1 | 98.2 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 1.00E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25240.t1 | O65751 | 89.3 | 225 | 23 | 1 | 1 | 225 | 77 | 300 | 1.7e-117 | 423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25240.t1 | G8A187 | 98.2 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 7.5e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene25240 | 0.917104 | 7.97E-86 | -1.69E-46 |
| MS.gene049376 | MS.gene25240 | 0.82765 | 1.39E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene25240 | 0.823024 | 1.73E-53 | -1.69E-46 |
| MS.gene051925 | MS.gene25240 | 0.992902 | 3.64E-196 | -1.69E-46 |
| MS.gene051927 | MS.gene25240 | 0.987902 | 5.80E-172 | -1.69E-46 |
| MS.gene052666 | MS.gene25240 | 0.862379 | 5.28E-64 | -1.69E-46 |
| MS.gene057321 | MS.gene25240 | 0.849424 | 3.26E-60 | -1.69E-46 |
| MS.gene059340 | MS.gene25240 | 0.81785 | 2.66E-52 | -1.69E-46 |
| MS.gene060483 | MS.gene25240 | 0.815753 | 7.87E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25240.t1 | MTR_7g107400 | 98.222 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 9.63e-165 | 456 |
| MS.gene25240.t1 | MTR_3g095810 | 91.111 | 225 | 18 | 2 | 1 | 225 | 77 | 299 | 2.42e-133 | 377 |
| MS.gene25240.t1 | MTR_3g095810 | 90.667 | 225 | 17 | 2 | 1 | 225 | 77 | 297 | 1.95e-132 | 374 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25240.t1 | AT3G04770 | 77.083 | 192 | 31 | 5 | 1 | 188 | 79 | 261 | 1.73e-98 | 288 |
| MS.gene25240.t1 | AT1G72370 | 77.778 | 180 | 27 | 3 | 1 | 168 | 78 | 256 | 1.48e-96 | 283 |
| MS.gene25240.t1 | AT1G72370 | 77.778 | 180 | 27 | 3 | 1 | 168 | 78 | 256 | 1.94e-96 | 283 |
| MS.gene25240.t1 | AT3G04770 | 91.339 | 127 | 11 | 0 | 1 | 127 | 79 | 205 | 4.50e-82 | 248 |
Find 77 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAATTTGCTCAGTATAC+TGG | 0.267475 | 7.1:-5929517 | MS.gene25240:CDS |
| ATCGATCAAGTACCAGCTTC+TGG | 0.282672 | 7.1:+5928019 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+TGG | 0.286416 | 7.1:+5928557 | None:intergenic |
| GTTCAATCTGCTAGACCTTA+TGG | 0.290724 | 7.1:-5929553 | MS.gene25240:CDS |
| TGCTTGCCCTTGTTGTTGGC+AGG | 0.316997 | 7.1:+5928470 | None:intergenic |
| CAGCAGTTCCTGCTGTCAAC+TGG | 0.338422 | 7.1:-5928048 | MS.gene25240:CDS |
| TCTTGCTCCTTTGCCTCCTC+AGG | 0.364214 | 7.1:+5928196 | None:intergenic |
| ACTGTGCTTGCCCTTGTTGT+TGG | 0.371019 | 7.1:+5928466 | None:intergenic |
| ACAGTATAGGATGTCTGTTT+TGG | 0.375538 | 7.1:-5928448 | MS.gene25240:CDS |
| GAACTGCATCATTCCATGTT+TGG | 0.376849 | 7.1:+5928083 | None:intergenic |
| CAGGAGCAGGTATTTGTTGT+GGG | 0.383724 | 7.1:+5927671 | None:intergenic |
| GAAACCTGATGATCAGTTCT+TGG | 0.383788 | 7.1:+5929400 | None:intergenic |
| TTCCCAGCCAGTTGCTTGGA+TGG | 0.405766 | 7.1:+5927639 | None:intergenic |
| AGCAGGCCATTGTCCATCAT+TGG | 0.409891 | 7.1:+5928114 | None:intergenic |
| ATCAGTGAGGATAAGAAGCC+TGG | 0.410991 | 7.1:+5929423 | None:intergenic |
| GCAGGCCATTGTCCATCATT+GGG | 0.413746 | 7.1:+5928115 | None:intergenic |
| ACTGGTGCCAATGCTATTGC+TGG | 0.415426 | 7.1:-5929499 | MS.gene25240:CDS |
| CCAATCAAGGAAGCTGCTCT+TGG | 0.415479 | 7.1:-5928557 | MS.gene25240:CDS |
| TTACCATGACATCCCACTTA+AGG | 0.419417 | 7.1:+5928378 | None:intergenic |
| GCAGGTATTTGTTGTGGGGC+TGG | 0.425106 | 7.1:+5927676 | None:intergenic |
| TCGATCAAGTACCAGCTTCT+GGG | 0.429103 | 7.1:+5928020 | None:intergenic |
| ACAGCAGGAACTGCTGGAAT+AGG | 0.430588 | 7.1:+5928055 | None:intergenic |
| CTTATTCCCAGCCAGTTGCT+TGG | 0.433981 | 7.1:+5927635 | None:intergenic |
| CAGGTTCTCTATAAAAGAAC+AGG | 0.436315 | 7.1:+5928215 | None:intergenic |
| GAATGAAACTTGCATCTGAT+TGG | 0.451068 | 7.1:+5929453 | None:intergenic |
| AGTCCATCCAAGCAACTGGC+TGG | 0.454371 | 7.1:-5927642 | MS.gene25240:CDS |
| CAGTTGACAGCAGGAACTGC+TGG | 0.458194 | 7.1:+5928049 | None:intergenic |
| TGATCCAAGAACTGATCATC+AGG | 0.468742 | 7.1:-5929404 | MS.gene25240:intron |
| AAGTCAGTAATAGCATAATC+TGG | 0.469421 | 7.1:+5928154 | None:intergenic |
| CCATTCGCCCTGGCCTTAAG+TGG | 0.476474 | 7.1:-5928391 | MS.gene25240:CDS |
| GCTATTACTGACTTTAATGC+AGG | 0.477186 | 7.1:-5928145 | MS.gene25240:CDS |
| GTTGAGTCCATCCAAGCAAC+TGG | 0.477635 | 7.1:-5927646 | MS.gene25240:CDS |
| GTATCACAGAAAGCAATTGT+TGG | 0.479071 | 7.1:+5928527 | None:intergenic |
| AACTGGGCAGCCCCAGAAGC+TGG | 0.486191 | 7.1:-5928031 | MS.gene25240:intron |
| GCTTGGATGGACTCAACTCC+AGG | 0.495466 | 7.1:+5927652 | None:intergenic |
| GGAACTGCTGGAATAGGCTC+TGG | 0.497641 | 7.1:+5928061 | None:intergenic |
| GGGGCTGCCCAGTTGACAGC+AGG | 0.498864 | 7.1:+5928040 | None:intergenic |
| CCAGGAGCAGGTATTTGTTG+TGG | 0.503860 | 7.1:+5927670 | None:intergenic |
| AGCAGTTCCTGCTGTCAACT+GGG | 0.509125 | 7.1:-5928047 | MS.gene25240:CDS |
| CATGTTTGGTCGATAGCAGC+AGG | 0.511174 | 7.1:+5928097 | None:intergenic |
| CCACAACAAATACCTGCTCC+TGG | 0.512625 | 7.1:-5927670 | MS.gene25240:CDS |
| TGTTTGTGTGCAGCCAATCA+AGG | 0.514122 | 7.1:-5928570 | MS.gene25240:intron |
| ATGACATCCCACTTAAGGCC+AGG | 0.514173 | 7.1:+5928383 | None:intergenic |
| AGAACAGCTCTCTGTCCATA+AGG | 0.514765 | 7.1:+5929538 | None:intergenic |
| GCTTGCCCTTGTTGTTGGCA+GGG | 0.514834 | 7.1:+5928471 | None:intergenic |
| AGATTTGTCTTGCAGCTGCA+GGG | 0.519344 | 7.1:-5927720 | MS.gene25240:intron |
| GCAGGTTCTATCCCCAATGA+TGG | 0.524423 | 7.1:-5928127 | MS.gene25240:CDS |
| CCACTTAAGGCCAGGGCGAA+TGG | 0.524759 | 7.1:+5928391 | None:intergenic |
| TAGAGAACCTGAGGAGGCAA+AGG | 0.541067 | 7.1:-5928203 | MS.gene25240:CDS |
| GTAATAGCATAATCTGGTGC+AGG | 0.546158 | 7.1:+5928160 | None:intergenic |
| AACAAGGGCAAGCACAGTAT+AGG | 0.547955 | 7.1:-5928461 | MS.gene25240:CDS |
| TGGCCTTAAGTGGGATGTCA+TGG | 0.555571 | 7.1:-5928381 | MS.gene25240:intron |
| GATTTGTCTTGCAGCTGCAG+GGG | 0.556515 | 7.1:-5927719 | MS.gene25240:intron |
| CTGCTGCTATCGACCAAACA+TGG | 0.557904 | 7.1:-5928096 | MS.gene25240:CDS |
| CGATCAAGTACCAGCTTCTG+GGG | 0.566204 | 7.1:+5928021 | None:intergenic |
| ATGGACTCAACTCCAGGAGC+AGG | 0.568466 | 7.1:+5927658 | None:intergenic |
| ATCTGATTGGTAAAAGTACC+AGG | 0.569249 | 7.1:+5929466 | None:intergenic |
| ATTGCTGGAAGGCACACGCC+TGG | 0.569818 | 7.1:-5929484 | MS.gene25240:CDS |
| CCTATGCGATATGTCGACAT+TGG | 0.570541 | 7.1:-5928497 | MS.gene25240:CDS |
| ATGCGTGGAACCATTCGCCC+TGG | 0.577456 | 7.1:-5928401 | MS.gene25240:CDS |
| AAGTTTCATTCAGTGAGCCC+AGG | 0.582162 | 7.1:-5929441 | MS.gene25240:CDS |
| AGGAGCAGGTATTTGTTGTG+GGG | 0.582996 | 7.1:+5927672 | None:intergenic |
| GTGCCTTCCAGCAATAGCAT+TGG | 0.585941 | 7.1:+5929492 | None:intergenic |
| TGAGGAGGCAAAGGAGCAAG+AGG | 0.586597 | 7.1:-5928194 | MS.gene25240:CDS |
| GTCCATCCAAGCAACTGGCT+GGG | 0.586705 | 7.1:-5927641 | MS.gene25240:CDS |
| TGGAATCCCTGCCAACAACA+AGG | 0.586772 | 7.1:-5928477 | MS.gene25240:CDS |
| TCAGTGAGGATAAGAAGCCT+GGG | 0.611983 | 7.1:+5929424 | None:intergenic |
| TGACATCCCACTTAAGGCCA+GGG | 0.615254 | 7.1:+5928384 | None:intergenic |
| CATTCGCCCTGGCCTTAAGT+GGG | 0.617158 | 7.1:-5928390 | MS.gene25240:CDS |
| GGAATCCCTGCCAACAACAA+GGG | 0.619315 | 7.1:-5928476 | MS.gene25240:CDS |
| AGGATGGTGTTGCAGATGCG+TGG | 0.623853 | 7.1:-5928416 | MS.gene25240:CDS |
| ATTTGTCTTGCAGCTGCAGG+GGG | 0.624967 | 7.1:-5927718 | MS.gene25240:intron |
| GTGCCAATGCTATTGCTGGA+AGG | 0.638251 | 7.1:-5929495 | MS.gene25240:CDS |
| CTATCCCCAATGATGGACAA+TGG | 0.660054 | 7.1:-5928120 | MS.gene25240:CDS |
| CAGGCCATTGTCCATCATTG+GGG | 0.668561 | 7.1:+5928116 | None:intergenic |
| CCAATGTCGACATATCGCAT+AGG | 0.669426 | 7.1:+5928497 | None:intergenic |
| GATCAGTTCTTGGATCAGTG+AGG | 0.719669 | 7.1:+5929410 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTATTATAAGAAATT+TGG | - | chr7.1:5928583-5928602 | MS.gene25240:intron | 10.0% |
| !!! | CTTTATTTTATATTCTATTA+TGG | + | chr7.1:5928079-5928098 | None:intergenic | 10.0% |
| !! | ATATTATTAAAACAGCTTAT+AGG | + | chr7.1:5928413-5928432 | None:intergenic | 15.0% |
| !! | TAATATGTTTATCCAAAATT+GGG | + | chr7.1:5927982-5928001 | None:intergenic | 15.0% |
| !!! | AAGTTTTTTTATTTTAGCTT+TGG | - | chr7.1:5927956-5927975 | MS.gene25240:intron | 15.0% |
| !!! | ACTATTTTTTCTTTTTGTAA+CGG | - | chr7.1:5928840-5928859 | MS.gene25240:intron | 15.0% |
| !!! | TGTTTTAATAATATATTGTG+TGG | - | chr7.1:5928419-5928438 | MS.gene25240:CDS | 15.0% |
| !!! | TTGTTTTTTTATGTTATTGT+GGG | - | chr7.1:5928127-5928146 | MS.gene25240:CDS | 15.0% |
| !! | AAGTTAACGAAATAAATGTT+GGG | + | chr7.1:5929358-5929377 | None:intergenic | 20.0% |
| !! | ATTAAGATGTTTATCCAAAA+AGG | + | chr7.1:5928307-5928326 | None:intergenic | 20.0% |
| !! | CATGTATATATATGAATATG+CGG | + | chr7.1:5928030-5928049 | None:intergenic | 20.0% |
| !! | CTAATATGTTTATCCAAAAT+TGG | + | chr7.1:5927983-5928002 | None:intergenic | 20.0% |
| !! | GTAATAATAAGTGCTTATAT+AGG | + | chr7.1:5928361-5928380 | None:intergenic | 20.0% |
| !! | TTAAGATGTTTATCCAAAAA+GGG | + | chr7.1:5928306-5928325 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTATGTTATTG+TGG | - | chr7.1:5928126-5928145 | MS.gene25240:CDS | 20.0% |
| !!! | TGTTTTTTTATGTTATTGTG+GGG | - | chr7.1:5928128-5928147 | MS.gene25240:CDS | 20.0% |
| ! | AGTTAACGAAATAAATGTTG+GGG | + | chr7.1:5929357-5929376 | None:intergenic | 25.0% |
| ! | CAAGTTAACGAAATAAATGT+TGG | + | chr7.1:5929359-5929378 | None:intergenic | 25.0% |
| !! | TCTCTATTTAAGATTTGTCA+GGG | - | chr7.1:5929384-5929403 | MS.gene25240:intron | 25.0% |
| !! | TTCTCTATTTAAGATTTGTC+AGG | - | chr7.1:5929383-5929402 | MS.gene25240:intron | 25.0% |
| !!! | GATTCATTGTTTTATGTGTA+GGG | - | chr7.1:5927850-5927869 | MS.gene25240:intron | 25.0% |
| !!! | TGATTCATTGTTTTATGTGT+AGG | - | chr7.1:5927849-5927868 | MS.gene25240:intron | 25.0% |
| AAACTTTGCACAAAAACCAA+TGG | + | chr7.1:5928267-5928286 | None:intergenic | 30.0% | |
| AACTTTGCACAAAAACCAAT+GGG | + | chr7.1:5928266-5928285 | None:intergenic | 30.0% | |
| AAGTCAGTAATAGCATAATC+TGG | + | chr7.1:5929044-5929063 | None:intergenic | 30.0% | |
| AAGTGCTTATATAGGATATG+AGG | + | chr7.1:5928353-5928372 | None:intergenic | 30.0% | |
| AATATATTGTGTGGAGCTTA+TGG | - | chr7.1:5928428-5928447 | MS.gene25240:CDS | 30.0% | |
| CAAGGTAAATCAATGTTGAA+GGG | + | chr7.1:5929248-5929267 | None:intergenic | 30.0% | |
| TCAAGGTAAATCAATGTTGA+AGG | + | chr7.1:5929249-5929268 | None:intergenic | 30.0% | |
| TTGATCAAGTCTATTGTCTT+GGG | - | chr7.1:5928937-5928956 | MS.gene25240:intron | 30.0% | |
| TTTGATCAAGTCTATTGTCT+TGG | - | chr7.1:5928936-5928955 | MS.gene25240:intron | 30.0% | |
| ! | CTCTATTTAAGATTTGTCAG+GGG | - | chr7.1:5929385-5929404 | MS.gene25240:intron | 30.0% |
| !!! | ATTTTAGCTTGAACCCTTTT+TGG | - | chr7.1:5928290-5928309 | MS.gene25240:intron | 30.0% |
| AAGCACTTGTAAACCAACTT+GGG | + | chr7.1:5928495-5928514 | None:intergenic | 35.0% | |
| AAGCACTTGTAAGTCTGTTT+GGG | + | chr7.1:5928204-5928223 | None:intergenic | 35.0% | |
| AAGCAGACAATCTGGTTATT+AGG | + | chr7.1:5928548-5928567 | None:intergenic | 35.0% | |
| AATTAGCAAATGCCAATGAC+AGG | + | chr7.1:5929318-5929337 | None:intergenic | 35.0% | |
| ACTTTGCACAAAAACCAATG+GGG | + | chr7.1:5928265-5928284 | None:intergenic | 35.0% | |
| ATCAAAGCTGAGAGATATCA+AGG | + | chr7.1:5929266-5929285 | None:intergenic | 35.0% | |
| ATTTCCTCTAATCCTGTCAT+TGG | - | chr7.1:5929303-5929322 | MS.gene25240:intron | 35.0% | |
| CAGGTTCTCTATAAAAGAAC+AGG | + | chr7.1:5928983-5929002 | None:intergenic | 35.0% | |
| GAATGAAACTTGCATCTGAT+TGG | + | chr7.1:5927745-5927764 | None:intergenic | 35.0% | |
| GACAATCTGGTTATTAGGTT+TGG | + | chr7.1:5928543-5928562 | None:intergenic | 35.0% | |
| GTATCACAGAAAGCAATTGT+TGG | + | chr7.1:5928671-5928690 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAACCAACT+TGG | + | chr7.1:5928496-5928515 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAGTCTGTT+TGG | + | chr7.1:5928205-5928224 | None:intergenic | 35.0% | |
| ! | ACAGTATAGGATGTCTGTTT+TGG | - | chr7.1:5928747-5928766 | MS.gene25240:intron | 35.0% |
| ! | CAATGTGAAGTATCCATATG+TGG | - | chr7.1:5928882-5928901 | MS.gene25240:intron | 35.0% |
| ! | CTCAAATTTGCTCAGTATAC+TGG | - | chr7.1:5927678-5927697 | MS.gene25240:CDS | 35.0% |
| ! | GTTCTTTTATAGAGAACCTG+AGG | - | chr7.1:5928983-5929002 | MS.gene25240:intron | 35.0% |
| !! | ATCTGATTGGTAAAAGTACC+AGG | + | chr7.1:5927732-5927751 | None:intergenic | 35.0% |
| !! | GCTATTACTGACTTTAATGC+AGG | - | chr7.1:5929050-5929069 | MS.gene25240:intron | 35.0% |
| !!! | TTTTAGCTTTGGCCCAATTT+TGG | - | chr7.1:5927967-5927986 | MS.gene25240:intron | 35.0% |
| AATGCCAATGACAGGATTAG+AGG | + | chr7.1:5929310-5929329 | None:intergenic | 40.0% | |
| ACAGACAAAAGCAGACAATC+TGG | + | chr7.1:5928556-5928575 | None:intergenic | 40.0% | |
| AGAGGAAATTTGAGAGATCG+AGG | + | chr7.1:5929292-5929311 | None:intergenic | 40.0% | |
| ATGTTATTGTGGGGAGCTTA+TGG | - | chr7.1:5928137-5928156 | MS.gene25240:CDS | 40.0% | |
| GAAACCTGATGATCAGTTCT+TGG | + | chr7.1:5927798-5927817 | None:intergenic | 40.0% | |
| GAACTGCATCATTCCATGTT+TGG | + | chr7.1:5929115-5929134 | None:intergenic | 40.0% | |
| GTAATAGCATAATCTGGTGC+AGG | + | chr7.1:5929038-5929057 | None:intergenic | 40.0% | |
| GTTCAATCTGCTAGACCTTA+TGG | - | chr7.1:5927642-5927661 | MS.gene25240:CDS | 40.0% | |
| TGATCCAAGAACTGATCATC+AGG | - | chr7.1:5927791-5927810 | MS.gene25240:intron | 40.0% | |
| TTACCATGACATCCCACTTA+AGG | + | chr7.1:5928820-5928839 | None:intergenic | 40.0% | |
| ! | CTTTTATAGAGAACCTGAGG+AGG | - | chr7.1:5928986-5929005 | MS.gene25240:intron | 40.0% |
| ! | TCTTGGGTTTTCTTTGATGC+AGG | - | chr7.1:5928953-5928972 | MS.gene25240:intron | 40.0% |
| !!! | AGGATGTCTGTTTTGGCTTT+TGG | - | chr7.1:5928754-5928773 | MS.gene25240:intron | 40.0% |
| AAACCTGCCAATTCAACCGA+TGG | + | chr7.1:5928918-5928937 | None:intergenic | 45.0% | |
| AACAAGGGCAAGCACAGTAT+AGG | - | chr7.1:5928734-5928753 | MS.gene25240:intron | 45.0% | |
| AACCTGCCAATTCAACCGAT+GGG | + | chr7.1:5928917-5928936 | None:intergenic | 45.0% | |
| AAGTTTCATTCAGTGAGCCC+AGG | - | chr7.1:5927754-5927773 | MS.gene25240:intron | 45.0% | |
| AGAACAGCTCTCTGTCCATA+AGG | + | chr7.1:5927660-5927679 | None:intergenic | 45.0% | |
| AGATTTGTCTTGCAGCTGCA+GGG | - | chr7.1:5929475-5929494 | MS.gene25240:CDS | 45.0% | |
| ATCAGTGAGGATAAGAAGCC+TGG | + | chr7.1:5927775-5927794 | None:intergenic | 45.0% | |
| ATCGATCAAGTACCAGCTTC+TGG | + | chr7.1:5929179-5929198 | None:intergenic | 45.0% | |
| ATGTGGCAATTGTTCCCCAT+CGG | - | chr7.1:5928899-5928918 | MS.gene25240:intron | 45.0% | |
| CAAAAACCAATGGGGCTGTT+TGG | + | chr7.1:5928257-5928276 | None:intergenic | 45.0% | |
| CCAATGTCGACATATCGCAT+AGG | + | chr7.1:5928701-5928720 | None:intergenic | 45.0% | |
| CCTATGCGATATGTCGACAT+TGG | - | chr7.1:5928698-5928717 | MS.gene25240:intron | 45.0% | |
| CTTGTAAACCAACTTGGGAG+AGG | + | chr7.1:5928490-5928509 | None:intergenic | 45.0% | |
| GATCAGTTCTTGGATCAGTG+AGG | + | chr7.1:5927788-5927807 | None:intergenic | 45.0% | |
| TAGATTTGTCTTGCAGCTGC+AGG | - | chr7.1:5929474-5929493 | MS.gene25240:CDS | 45.0% | |
| TCAGTGAGGATAAGAAGCCT+GGG | + | chr7.1:5927774-5927793 | None:intergenic | 45.0% | |
| TCGATCAAGTACCAGCTTCT+GGG | + | chr7.1:5929178-5929197 | None:intergenic | 45.0% | |
| TGGGGAACAATTGCCACATA+TGG | + | chr7.1:5928898-5928917 | None:intergenic | 45.0% | |
| TGTTTGTGTGCAGCCAATCA+AGG | - | chr7.1:5928625-5928644 | MS.gene25240:intron | 45.0% | |
| ! | TTGTTCCCCATCGGTTGAAT+TGG | - | chr7.1:5928908-5928927 | MS.gene25240:intron | 45.0% |
| !! | AGGAGCAGGTATTTGTTGTG+GGG | + | chr7.1:5929526-5929545 | None:intergenic | 45.0% |
| !! | CAGGAGCAGGTATTTGTTGT+GGG | + | chr7.1:5929527-5929546 | None:intergenic | 45.0% |
| !! | CTATCCCCAATGATGGACAA+TGG | - | chr7.1:5929075-5929094 | MS.gene25240:intron | 45.0% |
| !!! | GTCTGTTTTGGCTTTTGGCT+AGG | - | chr7.1:5928759-5928778 | MS.gene25240:intron | 45.0% |
| !!! | GTTTTGGCTTTTGGCTAGGA+TGG | - | chr7.1:5928763-5928782 | MS.gene25240:intron | 45.0% |
| ACAGCAGGAACTGCTGGAAT+AGG | + | chr7.1:5929143-5929162 | None:intergenic | 50.0% | |
| ACCTGCCAATTCAACCGATG+GGG | + | chr7.1:5928916-5928935 | None:intergenic | 50.0% | |
| AGCAGGCCATTGTCCATCAT+TGG | + | chr7.1:5929084-5929103 | None:intergenic | 50.0% | |
| AGCAGTTCCTGCTGTCAACT+GGG | - | chr7.1:5929148-5929167 | MS.gene25240:intron | 50.0% | |
| ATGACATCCCACTTAAGGCC+AGG | + | chr7.1:5928815-5928834 | None:intergenic | 50.0% | |
| ATTTGTCTTGCAGCTGCAGG+GGG | - | chr7.1:5929477-5929496 | MS.gene25240:CDS | 50.0% | |
| CAGGCCATTGTCCATCATTG+GGG | + | chr7.1:5929082-5929101 | None:intergenic | 50.0% | |
| CATGTTTGGTCGATAGCAGC+AGG | + | chr7.1:5929101-5929120 | None:intergenic | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+TGG | + | chr7.1:5928641-5928660 | None:intergenic | 50.0% | |
| CCAATCAAGGAAGCTGCTCT+TGG | - | chr7.1:5928638-5928657 | MS.gene25240:intron | 50.0% | |
| CCACAACAAATACCTGCTCC+TGG | - | chr7.1:5929525-5929544 | MS.gene25240:CDS | 50.0% | |
| CGATCAAGTACCAGCTTCTG+GGG | + | chr7.1:5929177-5929196 | None:intergenic | 50.0% | |
| CTGCTGCTATCGACCAAACA+TGG | - | chr7.1:5929099-5929118 | MS.gene25240:intron | 50.0% | |
| GATTTGTCTTGCAGCTGCAG+GGG | - | chr7.1:5929476-5929495 | MS.gene25240:CDS | 50.0% | |
| GCAGGCCATTGTCCATCATT+GGG | + | chr7.1:5929083-5929102 | None:intergenic | 50.0% | |
| GCAGGTTCTATCCCCAATGA+TGG | - | chr7.1:5929068-5929087 | MS.gene25240:intron | 50.0% | |
| GGAATCCCTGCCAACAACAA+GGG | - | chr7.1:5928719-5928738 | MS.gene25240:intron | 50.0% | |
| GTCAATCCAAACAGCCCCAT+TGG | - | chr7.1:5928248-5928267 | MS.gene25240:intron | 50.0% | |
| GTCTTAAGCCTCTCCCAAGT+TGG | - | chr7.1:5928479-5928498 | MS.gene25240:CDS | 50.0% | |
| GTGCCAATGCTATTGCTGGA+AGG | - | chr7.1:5927700-5927719 | MS.gene25240:CDS | 50.0% | |
| GTGCCTTCCAGCAATAGCAT+TGG | + | chr7.1:5927706-5927725 | None:intergenic | 50.0% | |
| GTTGAGTCCATCCAAGCAAC+TGG | - | chr7.1:5929549-5929568 | MS.gene25240:CDS | 50.0% | |
| TAGAGAACCTGAGGAGGCAA+AGG | - | chr7.1:5928992-5929011 | MS.gene25240:intron | 50.0% | |
| TGACATCCCACTTAAGGCCA+GGG | + | chr7.1:5928814-5928833 | None:intergenic | 50.0% | |
| TGGAATCCCTGCCAACAACA+AGG | - | chr7.1:5928718-5928737 | MS.gene25240:intron | 50.0% | |
| ! | ACTGGTGCCAATGCTATTGC+TGG | - | chr7.1:5927696-5927715 | MS.gene25240:CDS | 50.0% |
| ! | ACTGTGCTTGCCCTTGTTGT+TGG | + | chr7.1:5928732-5928751 | None:intergenic | 50.0% |
| ! | CCAGGAGCAGGTATTTGTTG+TGG | + | chr7.1:5929528-5929547 | None:intergenic | 50.0% |
| ! | TGGCCTTAAGTGGGATGTCA+TGG | - | chr7.1:5928814-5928833 | MS.gene25240:intron | 50.0% |
| AGTCCATCCAAGCAACTGGC+TGG | - | chr7.1:5929553-5929572 | MS.gene25240:CDS | 55.0% | |
| ATGGACTCAACTCCAGGAGC+AGG | + | chr7.1:5929540-5929559 | None:intergenic | 55.0% | |
| CAGCAGTTCCTGCTGTCAAC+TGG | - | chr7.1:5929147-5929166 | MS.gene25240:intron | 55.0% | |
| CAGTTGACAGCAGGAACTGC+TGG | + | chr7.1:5929149-5929168 | None:intergenic | 55.0% | |
| GGAACTGCTGGAATAGGCTC+TGG | + | chr7.1:5929137-5929156 | None:intergenic | 55.0% | |
| GTCCATCCAAGCAACTGGCT+GGG | - | chr7.1:5929554-5929573 | MS.gene25240:CDS | 55.0% | |
| TCTTGCTCCTTTGCCTCCTC+AGG | + | chr7.1:5929002-5929021 | None:intergenic | 55.0% | |
| TGAGGAGGCAAAGGAGCAAG+AGG | - | chr7.1:5929001-5929020 | MS.gene25240:intron | 55.0% | |
| TTCCCAGCCAGTTGCTTGGA+TGG | + | chr7.1:5929559-5929578 | None:intergenic | 55.0% | |
| ! | GCTTGGATGGACTCAACTCC+AGG | + | chr7.1:5929546-5929565 | None:intergenic | 55.0% |
| ! | TCCCCATCGGTTGAATTGGC+AGG | - | chr7.1:5928912-5928931 | MS.gene25240:intron | 55.0% |
| !! | AGGATGGTGTTGCAGATGCG+TGG | - | chr7.1:5928779-5928798 | MS.gene25240:intron | 55.0% |
| !! | CATTCGCCCTGGCCTTAAGT+GGG | - | chr7.1:5928805-5928824 | MS.gene25240:intron | 55.0% |
| !! | GCAGGTATTTGTTGTGGGGC+TGG | + | chr7.1:5929522-5929541 | None:intergenic | 55.0% |
| !! | GCTTGCCCTTGTTGTTGGCA+GGG | + | chr7.1:5928727-5928746 | None:intergenic | 55.0% |
| !! | TGCTTGCCCTTGTTGTTGGC+AGG | + | chr7.1:5928728-5928747 | None:intergenic | 55.0% |
| ATGCGTGGAACCATTCGCCC+TGG | - | chr7.1:5928794-5928813 | MS.gene25240:intron | 60.0% | |
| CCACTTAAGGCCAGGGCGAA+TGG | + | chr7.1:5928807-5928826 | None:intergenic | 60.0% | |
| TGCAGCTGCAGGGGGTGATT+GGG | - | chr7.1:5929485-5929504 | MS.gene25240:CDS | 60.0% | |
| TTGCAGCTGCAGGGGGTGAT+TGG | - | chr7.1:5929484-5929503 | MS.gene25240:CDS | 60.0% | |
| ! | ATTGCTGGAAGGCACACGCC+TGG | - | chr7.1:5927711-5927730 | MS.gene25240:intron | 60.0% |
| !! | CCATTCGCCCTGGCCTTAAG+TGG | - | chr7.1:5928804-5928823 | MS.gene25240:intron | 60.0% |
| AACTGGGCAGCCCCAGAAGC+TGG | - | chr7.1:5929164-5929183 | MS.gene25240:intron | 65.0% | |
| GCAGCTGCAGGGGGTGATTG+GGG | - | chr7.1:5929486-5929505 | MS.gene25240:CDS | 65.0% | |
| GGGGCTGCCCAGTTGACAGC+AGG | + | chr7.1:5929158-5929177 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5927636 | 5929581 | 5927636 | ID=MS.gene25240 |
| chr7.1 | mRNA | 5927636 | 5929581 | 5927636 | ID=MS.gene25240.t1;Parent=MS.gene25240 |
| chr7.1 | exon | 5929405 | 5929581 | 5929405 | ID=MS.gene25240.t1.exon1;Parent=MS.gene25240.t1 |
| chr7.1 | CDS | 5929405 | 5929581 | 5929405 | ID=cds.MS.gene25240.t1;Parent=MS.gene25240.t1 |
| chr7.1 | exon | 5928382 | 5928579 | 5928382 | ID=MS.gene25240.t1.exon2;Parent=MS.gene25240.t1 |
| chr7.1 | CDS | 5928382 | 5928579 | 5928382 | ID=cds.MS.gene25240.t1;Parent=MS.gene25240.t1 |
| chr7.1 | exon | 5928032 | 5928242 | 5928032 | ID=MS.gene25240.t1.exon3;Parent=MS.gene25240.t1 |
| chr7.1 | CDS | 5928032 | 5928242 | 5928032 | ID=cds.MS.gene25240.t1;Parent=MS.gene25240.t1 |
| chr7.1 | exon | 5927636 | 5927727 | 5927636 | ID=MS.gene25240.t1.exon4;Parent=MS.gene25240.t1 |
| chr7.1 | CDS | 5927636 | 5927727 | 5927636 | ID=cds.MS.gene25240.t1;Parent=MS.gene25240.t1 |
| Gene Sequence |
| Protein sequence |
