Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25336.t1 | XP_024629447.1 | 78.5 | 675 | 15 | 1 | 1 | 545 | 1 | 675 | 2.00E-293 | 1017.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25336.t1 | Q9SZL8 | 25.2 | 568 | 286 | 8 | 18 | 450 | 74 | 637 | 1.3e-43 | 179.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25336.t1 | A0A396GJD5 | 78.5 | 675 | 15 | 1 | 1 | 545 | 1 | 675 | 1.5e-293 | 1017.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene25336.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene25336 | 0.819453 | 1.15E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene25336 | 0.800221 | 1.60E-48 | -1.69E-46 |
| MS.gene049669 | MS.gene25336 | 0.802246 | 6.15E-49 | -1.69E-46 |
| MS.gene050201 | MS.gene25336 | 0.805026 | 1.63E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene25336 | 0.800951 | 1.13E-48 | -1.69E-46 |
| MS.gene050227 | MS.gene25336 | 0.811184 | 7.95E-51 | -1.69E-46 |
| MS.gene050228 | MS.gene25336 | 0.818142 | 2.29E-52 | -1.69E-46 |
| MS.gene050442 | MS.gene25336 | 0.800761 | 1.24E-48 | -1.69E-46 |
| MS.gene050719 | MS.gene25336 | 0.809819 | 1.57E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene25336 | 0.80517 | 1.52E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene25336 | 0.811402 | 7.13E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene25336 | 0.811566 | 6.57E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene25336 | 0.808165 | 3.54E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene25336 | 0.800606 | 1.33E-48 | -1.69E-46 |
| MS.gene053054 | MS.gene25336 | -0.809868 | 1.53E-50 | -1.69E-46 |
| MS.gene05415 | MS.gene25336 | 0.827462 | 1.54E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene25336 | 0.819379 | 1.20E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene25336 | 0.803778 | 2.96E-49 | -1.69E-46 |
| MS.gene057026 | MS.gene25336 | 0.820757 | 5.79E-53 | -1.69E-46 |
| MS.gene057060 | MS.gene25336 | 0.806924 | 6.49E-50 | -1.69E-46 |
| MS.gene057200 | MS.gene25336 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene057414 | MS.gene25336 | 0.806874 | 6.66E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene25336 | 0.805242 | 1.47E-49 | -1.69E-46 |
| MS.gene060572 | MS.gene25336 | 0.814009 | 1.92E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25336.t1 | MTR_6g051425 | 72.103 | 233 | 61 | 1 | 1 | 229 | 1 | 233 | 6.82e-121 | 359 |
| MS.gene25336.t1 | MTR_2g039370 | 78.873 | 71 | 15 | 0 | 49 | 119 | 98 | 168 | 3.43e-32 | 125 |
| MS.gene25336.t1 | MTR_3g465760 | 79.710 | 69 | 10 | 1 | 41 | 105 | 2 | 70 | 3.42e-31 | 115 |
| MS.gene25336.t1 | MTR_4g035820 | 27.036 | 307 | 188 | 13 | 18 | 304 | 76 | 366 | 1.28e-20 | 96.3 |
| MS.gene25336.t1 | MTR_1g070355 | 27.619 | 210 | 144 | 4 | 24 | 229 | 81 | 286 | 1.66e-16 | 83.2 |
| MS.gene25336.t1 | MTR_1g083640 | 25.328 | 229 | 148 | 6 | 22 | 229 | 56 | 282 | 4.32e-15 | 76.3 |
| MS.gene25336.t1 | MTR_0558s0020 | 25.764 | 229 | 147 | 7 | 22 | 229 | 41 | 267 | 1.70e-14 | 74.7 |
| MS.gene25336.t1 | MTR_1g013060 | 25.581 | 215 | 148 | 5 | 12 | 218 | 19 | 229 | 4.59e-13 | 69.3 |
| MS.gene25336.t1 | MTR_0402s0040 | 29.240 | 171 | 105 | 6 | 29 | 191 | 38 | 200 | 5.94e-13 | 71.6 |
| MS.gene25336.t1 | MTR_5g076070 | 23.364 | 214 | 156 | 4 | 20 | 229 | 56 | 265 | 1.16e-12 | 68.9 |
| MS.gene25336.t1 | MTR_3g450850 | 27.556 | 225 | 149 | 7 | 17 | 229 | 47 | 269 | 1.20e-12 | 69.7 |
| MS.gene25336.t1 | MTR_7g446520 | 27.230 | 213 | 137 | 3 | 25 | 236 | 96 | 291 | 2.17e-12 | 68.9 |
| MS.gene25336.t1 | MTR_2g098920 | 30.088 | 113 | 75 | 2 | 12 | 124 | 78 | 186 | 5.35e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25336.t1 | AT2G27110 | 29.003 | 331 | 208 | 8 | 195 | 520 | 192 | 500 | 1.31e-37 | 148 |
| MS.gene25336.t1 | AT2G27110 | 29.003 | 331 | 208 | 8 | 195 | 520 | 337 | 645 | 1.79e-37 | 148 |
| MS.gene25336.t1 | AT2G27110 | 29.003 | 331 | 208 | 8 | 195 | 520 | 337 | 645 | 1.79e-37 | 148 |
| MS.gene25336.t1 | AT4G38180 | 31.839 | 223 | 149 | 3 | 231 | 452 | 420 | 640 | 1.13e-33 | 136 |
| MS.gene25336.t1 | AT4G38180 | 33.636 | 220 | 137 | 5 | 13 | 228 | 72 | 286 | 2.54e-23 | 104 |
| MS.gene25336.t1 | AT4G38170 | 27.556 | 225 | 161 | 2 | 231 | 455 | 185 | 407 | 1.59e-30 | 125 |
| MS.gene25336.t1 | AT4G19990 | 31.364 | 220 | 150 | 1 | 229 | 448 | 285 | 503 | 3.65e-28 | 119 |
| MS.gene25336.t1 | AT4G19990 | 31.364 | 220 | 150 | 1 | 229 | 448 | 342 | 560 | 3.95e-28 | 119 |
| MS.gene25336.t1 | AT4G19990 | 24.111 | 253 | 125 | 7 | 1 | 229 | 1 | 210 | 4.28e-13 | 72.8 |
| MS.gene25336.t1 | AT4G19990 | 31.364 | 220 | 150 | 1 | 229 | 448 | 342 | 560 | 4.33e-28 | 119 |
| MS.gene25336.t1 | AT4G19990 | 24.111 | 253 | 125 | 7 | 1 | 229 | 1 | 210 | 4.72e-13 | 72.4 |
| MS.gene25336.t1 | AT4G19990 | 31.364 | 220 | 150 | 1 | 229 | 448 | 342 | 560 | 4.33e-28 | 119 |
| MS.gene25336.t1 | AT4G19990 | 24.111 | 253 | 125 | 7 | 1 | 229 | 1 | 210 | 4.72e-13 | 72.4 |
| MS.gene25336.t1 | AT4G19990 | 31.364 | 220 | 150 | 1 | 229 | 448 | 356 | 574 | 4.39e-28 | 119 |
| MS.gene25336.t1 | AT4G19990 | 24.096 | 249 | 122 | 7 | 5 | 229 | 19 | 224 | 8.68e-13 | 71.6 |
| MS.gene25336.t1 | AT4G19990 | 31.364 | 220 | 150 | 1 | 229 | 448 | 342 | 560 | 5.32e-28 | 119 |
| MS.gene25336.t1 | AT4G19990 | 24.111 | 253 | 125 | 7 | 1 | 229 | 1 | 210 | 4.88e-13 | 72.4 |
| MS.gene25336.t1 | AT4G19990 | 31.364 | 220 | 150 | 1 | 229 | 448 | 342 | 560 | 5.32e-28 | 119 |
| MS.gene25336.t1 | AT4G19990 | 24.111 | 253 | 125 | 7 | 1 | 229 | 1 | 210 | 4.88e-13 | 72.4 |
| MS.gene25336.t1 | AT4G15090 | 30.508 | 236 | 157 | 4 | 232 | 467 | 397 | 625 | 7.68e-28 | 119 |
| MS.gene25336.t1 | AT4G15090 | 26.786 | 224 | 147 | 6 | 13 | 229 | 50 | 263 | 2.86e-16 | 82.8 |
| MS.gene25336.t1 | AT4G15090 | 30.508 | 236 | 157 | 4 | 232 | 467 | 397 | 625 | 7.68e-28 | 119 |
| MS.gene25336.t1 | AT4G15090 | 26.786 | 224 | 147 | 6 | 13 | 229 | 50 | 263 | 2.86e-16 | 82.8 |
| MS.gene25336.t1 | AT4G15090 | 30.508 | 236 | 157 | 4 | 232 | 467 | 397 | 625 | 7.68e-28 | 119 |
| MS.gene25336.t1 | AT4G15090 | 26.786 | 224 | 147 | 6 | 13 | 229 | 50 | 263 | 2.86e-16 | 82.8 |
| MS.gene25336.t1 | AT4G15090 | 30.508 | 236 | 157 | 4 | 232 | 467 | 397 | 625 | 7.68e-28 | 119 |
| MS.gene25336.t1 | AT4G15090 | 26.786 | 224 | 147 | 6 | 13 | 229 | 50 | 263 | 2.86e-16 | 82.8 |
| MS.gene25336.t1 | AT4G15090 | 30.508 | 236 | 157 | 4 | 232 | 467 | 397 | 625 | 7.68e-28 | 119 |
| MS.gene25336.t1 | AT4G15090 | 26.786 | 224 | 147 | 6 | 13 | 229 | 50 | 263 | 2.86e-16 | 82.8 |
| MS.gene25336.t1 | AT3G22170 | 30.131 | 229 | 151 | 4 | 233 | 458 | 407 | 629 | 1.27e-27 | 118 |
| MS.gene25336.t1 | AT3G22170 | 30.131 | 229 | 151 | 4 | 233 | 458 | 407 | 629 | 1.27e-27 | 118 |
| MS.gene25336.t1 | AT1G76320 | 29.167 | 216 | 148 | 2 | 232 | 447 | 334 | 544 | 8.78e-26 | 112 |
| MS.gene25336.t1 | AT1G76320 | 26.442 | 208 | 138 | 7 | 25 | 229 | 5 | 200 | 4.36e-12 | 69.3 |
| MS.gene25336.t1 | AT1G76320 | 29.167 | 216 | 148 | 2 | 232 | 447 | 334 | 544 | 9.90e-26 | 112 |
| MS.gene25336.t1 | AT1G76320 | 26.442 | 208 | 138 | 7 | 25 | 229 | 5 | 200 | 3.89e-12 | 69.7 |
| MS.gene25336.t1 | AT1G76320 | 29.167 | 216 | 148 | 2 | 232 | 447 | 334 | 544 | 1.01e-25 | 112 |
| MS.gene25336.t1 | AT1G76320 | 26.442 | 208 | 138 | 7 | 25 | 229 | 5 | 200 | 4.37e-12 | 69.3 |
| MS.gene25336.t1 | AT1G76320 | 29.167 | 216 | 148 | 2 | 232 | 447 | 334 | 544 | 1.01e-25 | 112 |
| MS.gene25336.t1 | AT1G76320 | 26.442 | 208 | 138 | 7 | 25 | 229 | 5 | 200 | 4.37e-12 | 69.3 |
| MS.gene25336.t1 | AT5G18960 | 30.612 | 245 | 162 | 5 | 235 | 477 | 521 | 759 | 6.34e-25 | 109 |
| MS.gene25336.t1 | AT5G18960 | 30.612 | 245 | 162 | 5 | 235 | 477 | 521 | 759 | 6.34e-25 | 109 |
| MS.gene25336.t1 | AT3G06250 | 30.556 | 216 | 137 | 4 | 235 | 446 | 497 | 703 | 8.47e-24 | 106 |
| MS.gene25336.t1 | AT3G06250 | 29.204 | 226 | 115 | 7 | 4 | 228 | 181 | 362 | 9.41e-17 | 84.3 |
| MS.gene25336.t1 | AT3G06250 | 30.556 | 216 | 137 | 4 | 235 | 446 | 497 | 703 | 8.47e-24 | 106 |
| MS.gene25336.t1 | AT3G06250 | 29.204 | 226 | 115 | 7 | 4 | 228 | 181 | 362 | 9.41e-17 | 84.3 |
| MS.gene25336.t1 | AT3G06250 | 30.556 | 216 | 137 | 4 | 235 | 446 | 497 | 703 | 8.47e-24 | 106 |
| MS.gene25336.t1 | AT3G06250 | 29.204 | 226 | 115 | 7 | 4 | 228 | 181 | 362 | 9.41e-17 | 84.3 |
| MS.gene25336.t1 | AT2G32250 | 23.041 | 217 | 160 | 3 | 232 | 446 | 300 | 511 | 1.55e-17 | 86.7 |
| MS.gene25336.t1 | AT2G32250 | 23.041 | 217 | 160 | 3 | 232 | 446 | 300 | 511 | 1.56e-17 | 86.7 |
| MS.gene25336.t1 | AT2G32250 | 23.041 | 217 | 160 | 3 | 232 | 446 | 341 | 552 | 1.61e-17 | 86.7 |
| MS.gene25336.t1 | AT2G32250 | 23.041 | 217 | 160 | 3 | 232 | 446 | 341 | 552 | 1.61e-17 | 86.7 |
| MS.gene25336.t1 | AT2G32250 | 23.041 | 217 | 160 | 3 | 232 | 446 | 341 | 552 | 1.61e-17 | 86.7 |
| MS.gene25336.t1 | AT2G32250 | 23.041 | 217 | 160 | 3 | 232 | 446 | 341 | 552 | 1.76e-17 | 86.7 |
| MS.gene25336.t1 | AT2G32250 | 23.041 | 217 | 160 | 3 | 232 | 446 | 341 | 552 | 1.77e-17 | 86.7 |
| MS.gene25336.t1 | AT2G32250 | 23.041 | 217 | 160 | 3 | 232 | 446 | 341 | 552 | 1.77e-17 | 86.7 |
| MS.gene25336.t1 | AT1G52520 | 27.397 | 219 | 149 | 4 | 235 | 445 | 420 | 636 | 5.99e-17 | 84.7 |
| MS.gene25336.t1 | AT1G52520 | 28.182 | 220 | 143 | 5 | 10 | 229 | 81 | 285 | 9.38e-16 | 80.9 |
| MS.gene25336.t1 | AT5G28530 | 23.176 | 233 | 162 | 5 | 234 | 463 | 416 | 634 | 3.17e-15 | 79.3 |
| MS.gene25336.t1 | AT5G28530 | 27.193 | 228 | 147 | 5 | 18 | 229 | 56 | 280 | 2.20e-14 | 76.6 |
| MS.gene25336.t1 | AT5G28530 | 23.176 | 233 | 162 | 5 | 234 | 463 | 416 | 634 | 3.17e-15 | 79.3 |
| MS.gene25336.t1 | AT5G28530 | 27.193 | 228 | 147 | 5 | 18 | 229 | 56 | 280 | 2.20e-14 | 76.6 |
| MS.gene25336.t1 | AT5G28530 | 22.747 | 233 | 163 | 4 | 234 | 463 | 353 | 571 | 4.50e-15 | 78.6 |
| MS.gene25336.t1 | AT5G28530 | 29.282 | 181 | 119 | 4 | 18 | 192 | 56 | 233 | 5.39e-13 | 72.0 |
| MS.gene25336.t1 | AT5G28530 | 24.034 | 233 | 164 | 6 | 234 | 463 | 416 | 638 | 9.24e-15 | 77.8 |
| MS.gene25336.t1 | AT5G28530 | 26.872 | 227 | 149 | 4 | 18 | 229 | 56 | 280 | 2.14e-14 | 76.6 |
| MS.gene25336.t1 | AT5G28530 | 23.605 | 233 | 165 | 5 | 234 | 463 | 353 | 575 | 1.41e-14 | 77.0 |
| MS.gene25336.t1 | AT5G28530 | 29.282 | 181 | 119 | 4 | 18 | 192 | 56 | 233 | 5.42e-13 | 72.0 |
| MS.gene25336.t1 | AT1G10240 | 25.342 | 292 | 183 | 8 | 231 | 515 | 398 | 661 | 1.26e-13 | 74.3 |
| MS.gene25336.t1 | AT1G10240 | 28.182 | 220 | 141 | 7 | 18 | 226 | 49 | 262 | 5.04e-13 | 72.4 |
| MS.gene25336.t1 | AT1G10240 | 25.342 | 292 | 183 | 8 | 231 | 515 | 398 | 661 | 1.26e-13 | 74.3 |
| MS.gene25336.t1 | AT1G10240 | 28.182 | 220 | 141 | 7 | 18 | 226 | 49 | 262 | 5.04e-13 | 72.4 |
| MS.gene25336.t1 | AT1G80010 | 23.490 | 298 | 198 | 11 | 229 | 514 | 439 | 718 | 1.61e-13 | 73.9 |
| MS.gene25336.t1 | AT4G12850 | 31.579 | 133 | 83 | 4 | 9 | 139 | 6 | 132 | 4.93e-11 | 61.2 |
| MS.gene25336.t1 | AT3G59470 | 30.631 | 111 | 73 | 2 | 10 | 120 | 66 | 172 | 6.62e-11 | 63.2 |
| MS.gene25336.t1 | AT3G59470 | 30.631 | 111 | 73 | 2 | 10 | 120 | 66 | 172 | 6.62e-11 | 63.2 |
| MS.gene25336.t1 | AT3G59470 | 30.631 | 111 | 73 | 2 | 10 | 120 | 78 | 184 | 7.43e-11 | 63.5 |
Find 0 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATATTAGTGAAACATTA+CGG | - | 57415:87291-87310 | MS.gene25336:CDS | 15.0% |
| !! | AAACTTATTTAGTAAATGCA+TGG | - | 57415:86947-86966 | MS.gene25336:intron | 20.0% |
| !! | ACTACAATTAATCTTCATAT+TGG | + | 57415:87489-87508 | None:intergenic | 20.0% |
| !! | TAAGCCTAATAAAAAATATG+TGG | - | 57415:87448-87467 | MS.gene25336:CDS | 20.0% |
| !! | TAGTTGATTATAATTGCTTT+GGG | - | 57415:86592-86611 | MS.gene25336:CDS | 20.0% |
| !! | TCACTAATATTTATAACAAG+AGG | + | 57415:87284-87303 | None:intergenic | 20.0% |
| !! | TTCTACATCTGAATTTAAAT+TGG | + | 57415:87849-87868 | None:intergenic | 20.0% |
| !!! | CATATTTTTTATTAGGCTTA+TGG | + | 57415:87448-87467 | None:intergenic | 20.0% |
| ! | AAATTCAGATGTAGAAACAA+TGG | - | 57415:87853-87872 | MS.gene25336:CDS | 25.0% |
| ! | AAGAAGAATTTCAAAGAACT+TGG | - | 57415:86985-87004 | MS.gene25336:intron | 25.0% |
| ! | AAGAAGCTCAAAATATTATG+TGG | - | 57415:87774-87793 | MS.gene25336:CDS | 25.0% |
| ! | ACCAATTCTTCTTAAAAAGA+TGG | - | 57415:87591-87610 | MS.gene25336:CDS | 25.0% |
| ! | AGAAGAATTTCAAAGAACTT+GGG | - | 57415:86986-87005 | MS.gene25336:intron | 25.0% |
| ! | AGTTGATTATAATTGCTTTG+GGG | - | 57415:86593-86612 | MS.gene25336:CDS | 25.0% |
| ! | ATGTGGAAATTACTTGATAT+TGG | - | 57415:87791-87810 | MS.gene25336:CDS | 25.0% |
| ! | CTAATATTTATAACAAGAGG+AGG | + | 57415:87281-87300 | None:intergenic | 25.0% |
| ! | GTAGTTGATTATAATTGCTT+TGG | - | 57415:86591-86610 | MS.gene25336:CDS | 25.0% |
| ! | TGTGGAAATTACTTGATATT+GGG | - | 57415:87792-87811 | MS.gene25336:CDS | 25.0% |
| ! | TTATTTAGTAAATGCATGGA+AGG | - | 57415:86951-86970 | MS.gene25336:intron | 25.0% |
| ! | TTCACTTTCATCAAATAACA+AGG | + | 57415:86724-86743 | None:intergenic | 25.0% |
| ! | TTGCGGATTTATAACATTAA+AGG | - | 57415:87551-87570 | MS.gene25336:CDS | 25.0% |
| ! | TTTAAAAACAATGAACCTGA+TGG | - | 57415:86108-86127 | MS.gene25336:CDS | 25.0% |
| ! | TTTCTAAATGAGTATCTTGA+AGG | - | 57415:87353-87372 | MS.gene25336:CDS | 25.0% |
| !! | ACTTTTATTGTTCCAAACAA+GGG | - | 57415:86085-86104 | MS.gene25336:CDS | 25.0% |
| !!! | AAAGCATTTTTAGAGAGTAT+GGG | - | 57415:86765-86784 | MS.gene25336:CDS | 25.0% |
| !!! | ACCATCTTTTTAAGAAGAAT+TGG | + | 57415:87595-87614 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTAAACCCTTGTT+TGG | + | 57415:86100-86119 | None:intergenic | 25.0% |
| !!! | GTCACCACATATTTTTTATT+AGG | + | 57415:87455-87474 | None:intergenic | 25.0% |
| !!! | TAAAGATTGTTTTTGGTTGT+TGG | + | 57415:86794-86813 | None:intergenic | 25.0% |
| AAAGATGGTCAAAAAATGCA+AGG | - | 57415:87606-87625 | MS.gene25336:CDS | 30.0% | |
| AACAAATATCTTTGCTGAAG+TGG | + | 57415:86258-86277 | None:intergenic | 30.0% | |
| AAGAACAAATTGCTTAGCTA+TGG | - | 57415:86158-86177 | MS.gene25336:CDS | 30.0% | |
| AAGTTGAAATTTATCGAAGC+CGG | - | 57415:86444-86463 | MS.gene25336:CDS | 30.0% | |
| AGATTTAATGTGACCAAAGA+AGG | - | 57415:86183-86202 | MS.gene25336:CDS | 30.0% | |
| ATAAGCTTCAAGATCATCAA+TGG | - | 57415:87027-87046 | MS.gene25336:intron | 30.0% | |
| ATCATCATTGATCACTGAAA+TGG | + | 57415:87681-87700 | None:intergenic | 30.0% | |
| ATTAGAGTTACACATATTGG+GGG | - | 57415:86342-86361 | MS.gene25336:CDS | 30.0% | |
| ATTGTGATCCAATATCAACT+TGG | + | 57415:86223-86242 | None:intergenic | 30.0% | |
| CATGTCATCGTTTATGTTTA+TGG | - | 57415:86865-86884 | MS.gene25336:intron | 30.0% | |
| CATTAGAGTTACACATATTG+GGG | - | 57415:86341-86360 | MS.gene25336:CDS | 30.0% | |
| CCATTAGAGTTACACATATT+GGG | - | 57415:86340-86359 | MS.gene25336:CDS | 30.0% | |
| GAAAAAGAAAACACGTTTGA+AGG | - | 57415:86062-86081 | MS.gene25336:CDS | 30.0% | |
| GACAAATGTCAATGAAAATG+AGG | - | 57415:87877-87896 | MS.gene25336:CDS | 30.0% | |
| GATAAATTTCAACTTTCCAG+TGG | + | 57415:86439-86458 | None:intergenic | 30.0% | |
| GTGGAAATTACTTGATATTG+GGG | - | 57415:87793-87812 | MS.gene25336:CDS | 30.0% | |
| TGACCAAGATAAATATCTCT+AGG | + | 57415:85940-85959 | None:intergenic | 30.0% | |
| TGATGATTTACACCAACAAA+GGG | + | 57415:86675-86694 | None:intergenic | 30.0% | |
| TTGAGAAGATGTTGAAAAAG+TGG | - | 57415:87210-87229 | MS.gene25336:intron | 30.0% | |
| ! | AAAGTGAAGTTTCTTTTGCT+TGG | - | 57415:86736-86755 | MS.gene25336:CDS | 30.0% |
| ! | GACTTTTATTGTTCCAAACA+AGG | - | 57415:86084-86103 | MS.gene25336:CDS | 30.0% |
| ! | TGAGCTGTAAAGATTGTTTT+TGG | + | 57415:86801-86820 | None:intergenic | 30.0% |
| !! | AACAGGTTTTAGTGTAAGAA+AGG | - | 57415:86014-86033 | MS.gene25336:CDS | 30.0% |
| !! | ACAGGTTTTAGTGTAAGAAA+GGG | - | 57415:86015-86034 | MS.gene25336:CDS | 30.0% |
| !! | CAAAGCATTTTTAGAGAGTA+TGG | - | 57415:86764-86783 | MS.gene25336:CDS | 30.0% |
| !! | CTTTTTAAGAAGAATTGGTC+AGG | + | 57415:87590-87609 | None:intergenic | 30.0% |
| !! | GAAAGTTACCAAGTTGATAT+TGG | - | 57415:86212-86231 | MS.gene25336:CDS | 30.0% |
| AACTCTCACACAATTCTTAG+TGG | - | 57415:87184-87203 | MS.gene25336:intron | 35.0% | |
| AAGAATGCTCCTTCACATTT+GGG | - | 57415:86897-86916 | MS.gene25336:intron | 35.0% | |
| AATGAGTATCTTGAAGGAAC+AGG | - | 57415:87359-87378 | MS.gene25336:CDS | 35.0% | |
| ACACATATTGGGGGTTATTT+AGG | - | 57415:86351-86370 | MS.gene25336:CDS | 35.0% | |
| AGCATTGCGATAATGAATAC+CGG | + | 57415:87708-87727 | None:intergenic | 35.0% | |
| AGTTGAAATTTATCGAAGCC+GGG | - | 57415:86445-86464 | MS.gene25336:CDS | 35.0% | |
| ATCATTGATCACTGAAATGG+AGG | + | 57415:87678-87697 | None:intergenic | 35.0% | |
| ATGATTTACACCAACAAAGG+GGG | + | 57415:86673-86692 | None:intergenic | 35.0% | |
| ATGCATAATTATGTCTCCAC+TGG | - | 57415:86420-86439 | MS.gene25336:CDS | 35.0% | |
| CACATATTGGGGGTTATTTA+GGG | - | 57415:86352-86371 | MS.gene25336:CDS | 35.0% | |
| CATAAACGATGACATGCATT+TGG | + | 57415:86861-86880 | None:intergenic | 35.0% | |
| CATTCACCAAAGACTTTATG+CGG | + | 57415:86317-86336 | None:intergenic | 35.0% | |
| CCCAATATGTGTAACTCTAA+TGG | + | 57415:86343-86362 | None:intergenic | 35.0% | |
| CTGTACACTGTAATAGAACA+TGG | + | 57415:86520-86539 | None:intergenic | 35.0% | |
| CTTGTGCTTGTTTACTTTGT+AGG | + | 57415:86494-86513 | None:intergenic | 35.0% | |
| GAGCCTAGAGATATTTATCT+TGG | - | 57415:85934-85953 | MS.gene25336:CDS | 35.0% | |
| GATGATTTACACCAACAAAG+GGG | + | 57415:86674-86693 | None:intergenic | 35.0% | |
| GCCATTAGAGTTACACATAT+TGG | - | 57415:86339-86358 | MS.gene25336:CDS | 35.0% | |
| GGTTATTTAGGGAAAGAAGT+TGG | - | 57415:86363-86382 | MS.gene25336:CDS | 35.0% | |
| GTGATGATTTACACCAACAA+AGG | + | 57415:86676-86695 | None:intergenic | 35.0% | |
| TAAGAATGCTCCTTCACATT+TGG | - | 57415:86896-86915 | MS.gene25336:intron | 35.0% | |
| TATTTAGGGAAAGAAGTTGG+TGG | - | 57415:86366-86385 | MS.gene25336:CDS | 35.0% | |
| TGTATGAAATTCGCCATAAG+TGG | - | 57415:87060-87079 | MS.gene25336:intron | 35.0% | |
| TGTTTGTACTCTCAATCCTT+TGG | + | 57415:87133-87152 | None:intergenic | 35.0% | |
| TTCTTTGTAGTCATGCTTTG+CGG | - | 57415:87534-87553 | MS.gene25336:CDS | 35.0% | |
| TTGTTGGTGTAAATCATCAC+TGG | - | 57415:86676-86695 | MS.gene25336:CDS | 35.0% | |
| ! | GTCATTCTACCATCTAGTTT+CGG | - | 57415:87736-87755 | MS.gene25336:CDS | 35.0% |
| ! | TGAGAGTACAAACAATGTGT+TGG | - | 57415:87139-87158 | MS.gene25336:intron | 35.0% |
| ! | TTTTAGTGTAAGAAAGGGGA+AGG | - | 57415:86020-86039 | MS.gene25336:CDS | 35.0% |
| !! | CAGGTTTTAGTGTAAGAAAG+GGG | - | 57415:86016-86035 | MS.gene25336:CDS | 35.0% |
| AACATTACGGCATGCATCTA+CGG | - | 57415:87304-87323 | MS.gene25336:CDS | 40.0% | |
| AACTTTCCACACTCCTTCTT+TGG | + | 57415:86199-86218 | None:intergenic | 40.0% | |
| ACCATCTCTCCAAAAGACAT+TGG | + | 57415:86565-86584 | None:intergenic | 40.0% | |
| AGAAGACCGCATAAAGTCTT+TGG | - | 57415:86308-86327 | MS.gene25336:CDS | 40.0% | |
| AGCAAGAATGTATTCTCTGC+TGG | - | 57415:87095-87114 | MS.gene25336:intron | 40.0% | |
| AGGCATGTGCTCATAAATCA+CGG | + | 57415:87633-87652 | None:intergenic | 40.0% | |
| ATGAGAGAACCCAAATGTGA+AGG | + | 57415:86909-86928 | None:intergenic | 40.0% | |
| ATTTATGAGCACATGCCTAG+GGG | - | 57415:87635-87654 | MS.gene25336:CDS | 40.0% | |
| CAATAAAGATTGAGCATCCC+CGG | + | 57415:86466-86485 | None:intergenic | 40.0% | |
| CACTGGCAAAATGTCATGTT+TGG | - | 57415:86693-86712 | MS.gene25336:CDS | 40.0% | |
| CATTGGTCAAACGTGATTCA+TGG | + | 57415:86548-86567 | None:intergenic | 40.0% | |
| CTAGGCTCATCAGTTTCAAT+TGG | + | 57415:85922-85941 | None:intergenic | 40.0% | |
| CTTGACTTTCCGAAACTAGA+TGG | + | 57415:87748-87767 | None:intergenic | 40.0% | |
| GATTTATGAGCACATGCCTA+GGG | - | 57415:87634-87653 | MS.gene25336:CDS | 40.0% | |
| GTTGAAATTTATCGAAGCCG+GGG | - | 57415:86446-86465 | MS.gene25336:CDS | 40.0% | |
| TGATTTATGAGCACATGCCT+AGG | - | 57415:87633-87652 | MS.gene25336:CDS | 40.0% | |
| TGCCCATTGAATCAAACTTG+CGG | + | 57415:87514-87533 | None:intergenic | 40.0% | |
| TGCCGCAAGTTTGATTCAAT+GGG | - | 57415:87509-87528 | MS.gene25336:CDS | 40.0% | |
| TTATAAGCCACTTCACCATC+AGG | + | 57415:86126-86145 | None:intergenic | 40.0% | |
| TTGCCGCAAGTTTGATTCAA+TGG | - | 57415:87508-87527 | MS.gene25336:CDS | 40.0% | |
| ! | CAAGAGCATGCTTTCAAAAC+AGG | - | 57415:85997-86016 | MS.gene25336:CDS | 40.0% |
| ! | CACGTTTGACCAATGTCTTT+TGG | - | 57415:86553-86572 | MS.gene25336:CDS | 40.0% |
| ! | GTGATCAATGATGATGATGC+CGG | - | 57415:87686-87705 | MS.gene25336:CDS | 40.0% |
| ! | TAACAAGAGGAGGTGTACTT+TGG | + | 57415:87271-87290 | None:intergenic | 40.0% |
| !! | ACCAATGTCTTTTGGAGAGA+TGG | - | 57415:86561-86580 | MS.gene25336:CDS | 40.0% |
| !!! | CTGTTTTGAAAGCATGCTCT+TGG | + | 57415:85999-86018 | None:intergenic | 40.0% |
| ACTTGATATTGGGGCTGAGA+GGG | - | 57415:87802-87821 | MS.gene25336:CDS | 45.0% | |
| ATGTGACCAAAGAAGGAGTG+TGG | - | 57415:86190-86209 | MS.gene25336:CDS | 45.0% | |
| ATTCCTCCTCAACCTCTATG+CGG | + | 57415:87238-87257 | None:intergenic | 45.0% | |
| CATGGCTAAAGCTATTGGAG+AGG | - | 57415:86830-86849 | MS.gene25336:CDS | 45.0% | |
| CCAGTCATGGCTAAAGCTAT+TGG | - | 57415:86825-86844 | MS.gene25336:CDS | 45.0% | |
| GAGTATCTTGAAGGAACAGG+TGG | - | 57415:87362-87381 | MS.gene25336:CDS | 45.0% | |
| GGAAACATGCTTCAGACCAT+TGG | - | 57415:87898-87917 | MS.gene25336:CDS | 45.0% | |
| TACAGCTCATCATCCAGTCA+TGG | - | 57415:86812-86831 | MS.gene25336:CDS | 45.0% | |
| TACTTGATATTGGGGCTGAG+AGG | - | 57415:87801-87820 | MS.gene25336:CDS | 45.0% | |
| TATACGCAGTGCTCCACTTA+TGG | + | 57415:87076-87095 | None:intergenic | 45.0% | |
| TGTACTCTCAATCCTTTGGC+AGG | + | 57415:87129-87148 | None:intergenic | 45.0% | |
| ! | CAATGAACCTGATGGTGAAG+TGG | - | 57415:86116-86135 | MS.gene25336:CDS | 45.0% |
| ! | GTTGGTGGAGTTGACAAACA+TGG | - | 57415:86381-86400 | MS.gene25336:CDS | 45.0% |
| !! | CCAATAGCTTTAGCCATGAC+TGG | + | 57415:86828-86847 | None:intergenic | 45.0% |
| !! | TTGATTTGTGCCCCCTTTGT+TGG | - | 57415:86660-86679 | MS.gene25336:CDS | 45.0% |
| CTGGTATCAAGTCCTGCCAA+AGG | - | 57415:87114-87133 | MS.gene25336:intron | 50.0% | |
| GAATCTTCTCCCATACCCCT+AGG | + | 57415:87653-87672 | None:intergenic | 50.0% | |
| GAAAAAGTGGCGCCGCATAG+AGG | - | 57415:87223-87242 | MS.gene25336:intron | 55.0% | |
| TGAGCACATGCCTAGGGGTA+TGG | - | 57415:87640-87659 | MS.gene25336:CDS | 55.0% | |
| ! | GAGAGGGTGCGAAAAGGTGT+TGG | - | 57415:87818-87837 | MS.gene25336:CDS | 55.0% |
| ! | GAGCACATGCCTAGGGGTAT+GGG | - | 57415:87641-87660 | MS.gene25336:CDS | 55.0% |
| !! | GGTGCGAAAAGGTGTTGGCA+AGG | - | 57415:87823-87842 | MS.gene25336:CDS | 55.0% |
| GCGCCGCATAGAGGTTGAGG+AGG | - | 57415:87232-87251 | MS.gene25336:intron | 65.0% | |
| GTGGCGCCGCATAGAGGTTG+AGG | - | 57415:87229-87248 | MS.gene25336:intron | 65.0% | |
| ! | GGGGCTGAGAGGGTGCGAAA+AGG | - | 57415:87812-87831 | MS.gene25336:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 57415 | gene | 85898 | 87925 | 85898 | ID=MS.gene25336 |
| 57415 | mRNA | 85898 | 87925 | 85898 | ID=MS.gene25336.t1;Parent=MS.gene25336 |
| 57415 | exon | 87241 | 87925 | 87241 | ID=MS.gene25336.t1.exon1;Parent=MS.gene25336.t1 |
| 57415 | CDS | 87241 | 87925 | 87241 | ID=cds.MS.gene25336.t1;Parent=MS.gene25336.t1 |
| 57415 | exon | 85898 | 86850 | 85898 | ID=MS.gene25336.t1.exon2;Parent=MS.gene25336.t1 |
| 57415 | CDS | 85898 | 86850 | 85898 | ID=cds.MS.gene25336.t1;Parent=MS.gene25336.t1 |
| Gene Sequence |
| Protein sequence |
