Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25649.t1 | XP_013450314.1 | 98.2 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 1.00E-126 | 462.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25649.t1 | O65751 | 89.3 | 225 | 23 | 1 | 1 | 225 | 77 | 300 | 1.7e-117 | 423.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25649.t1 | G8A187 | 98.2 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 7.5e-127 | 462.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049306 | MS.gene25649 | 0.911601 | 5.05E-83 | -1.69E-46 |
| MS.gene049376 | MS.gene25649 | 0.82425 | 8.93E-54 | -1.69E-46 |
| MS.gene049387 | MS.gene25649 | 0.825555 | 4.40E-54 | -1.69E-46 |
| MS.gene051828 | MS.gene25649 | 0.800531 | 1.38E-48 | -1.69E-46 |
| MS.gene051925 | MS.gene25649 | 0.995737 | 2.38E-219 | -1.69E-46 |
| MS.gene051927 | MS.gene25649 | 0.985907 | 4.77E-165 | -1.69E-46 |
| MS.gene052666 | MS.gene25649 | 0.87331 | 1.62E-67 | -1.69E-46 |
| MS.gene057321 | MS.gene25649 | 0.842184 | 3.02E-58 | -1.69E-46 |
| MS.gene059340 | MS.gene25649 | 0.824044 | 9.99E-54 | -1.69E-46 |
| MS.gene060483 | MS.gene25649 | 0.813502 | 2.48E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25649.t1 | MTR_7g107400 | 98.222 | 225 | 4 | 0 | 1 | 225 | 73 | 297 | 9.63e-165 | 456 |
| MS.gene25649.t1 | MTR_3g095810 | 91.111 | 225 | 18 | 2 | 1 | 225 | 77 | 299 | 2.42e-133 | 377 |
| MS.gene25649.t1 | MTR_3g095810 | 90.667 | 225 | 17 | 2 | 1 | 225 | 77 | 297 | 1.95e-132 | 374 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25649.t1 | AT3G04770 | 77.083 | 192 | 31 | 5 | 1 | 188 | 79 | 261 | 1.73e-98 | 288 |
| MS.gene25649.t1 | AT1G72370 | 77.778 | 180 | 27 | 3 | 1 | 168 | 78 | 256 | 1.48e-96 | 283 |
| MS.gene25649.t1 | AT1G72370 | 77.778 | 180 | 27 | 3 | 1 | 168 | 78 | 256 | 1.94e-96 | 283 |
| MS.gene25649.t1 | AT3G04770 | 91.339 | 127 | 11 | 0 | 1 | 127 | 79 | 205 | 4.50e-82 | 248 |
Find 77 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAATTTGCTCAGTATAC+TGG | 0.267475 | 7.1:-5952901 | MS.gene25649:CDS |
| ATCGATCAAGTACCAGCTTC+TGG | 0.282672 | 7.1:+5951403 | None:intergenic |
| CCAAGAGCAGCTTCCTTGAT+TGG | 0.286416 | 7.1:+5951941 | None:intergenic |
| GTTCAATCTGCTAGACCTTA+TGG | 0.290724 | 7.1:-5952937 | MS.gene25649:CDS |
| TGCTTGCCCTTGTTGTTGGC+AGG | 0.316997 | 7.1:+5951854 | None:intergenic |
| CAGCAGTTCCTGCTGTCAAC+TGG | 0.338422 | 7.1:-5951432 | MS.gene25649:CDS |
| TCTTGCTCCTTTGCCTCCTC+AGG | 0.364214 | 7.1:+5951580 | None:intergenic |
| ACTGTGCTTGCCCTTGTTGT+TGG | 0.371019 | 7.1:+5951850 | None:intergenic |
| ACAGTATAGGATGTCTGTTT+TGG | 0.375538 | 7.1:-5951832 | MS.gene25649:CDS |
| GAACTGCATCATTCCATGTT+TGG | 0.376849 | 7.1:+5951467 | None:intergenic |
| CAGGAGCAGGTATTTGTTGT+GGG | 0.383724 | 7.1:+5951055 | None:intergenic |
| GAAACCTGATGATCAGTTCT+TGG | 0.383788 | 7.1:+5952784 | None:intergenic |
| TTCCCAGCCAGTTGCTTGGA+TGG | 0.405766 | 7.1:+5951023 | None:intergenic |
| AGCAGGCCATTGTCCATCAT+TGG | 0.409891 | 7.1:+5951498 | None:intergenic |
| ATCAGTGAGGATAAGAAGCC+TGG | 0.410991 | 7.1:+5952807 | None:intergenic |
| GCAGGCCATTGTCCATCATT+GGG | 0.413746 | 7.1:+5951499 | None:intergenic |
| ACTGGTGCCAATGCTATTGC+TGG | 0.415426 | 7.1:-5952883 | MS.gene25649:CDS |
| CCAATCAAGGAAGCTGCTCT+TGG | 0.415479 | 7.1:-5951941 | MS.gene25649:CDS |
| TTACCATGACATCCCACTTA+AGG | 0.419417 | 7.1:+5951762 | None:intergenic |
| GCAGGTATTTGTTGTGGGGC+TGG | 0.425106 | 7.1:+5951060 | None:intergenic |
| TCGATCAAGTACCAGCTTCT+GGG | 0.429103 | 7.1:+5951404 | None:intergenic |
| ACAGCAGGAACTGCTGGAAT+AGG | 0.430588 | 7.1:+5951439 | None:intergenic |
| CTTATTCCCAGCCAGTTGCT+TGG | 0.433981 | 7.1:+5951019 | None:intergenic |
| CAGGTTCTCTATAAAAGAAC+AGG | 0.436315 | 7.1:+5951599 | None:intergenic |
| GAATGAAACTTGCATCTGAT+TGG | 0.451068 | 7.1:+5952837 | None:intergenic |
| AGTCCATCCAAGCAACTGGC+TGG | 0.454371 | 7.1:-5951026 | MS.gene25649:CDS |
| CAGTTGACAGCAGGAACTGC+TGG | 0.458194 | 7.1:+5951433 | None:intergenic |
| TGATCCAAGAACTGATCATC+AGG | 0.468742 | 7.1:-5952788 | MS.gene25649:intron |
| AAGTCAGTAATAGCATAATC+TGG | 0.469421 | 7.1:+5951538 | None:intergenic |
| CCATTCGCCCTGGCCTTAAG+TGG | 0.476474 | 7.1:-5951775 | MS.gene25649:CDS |
| GCTATTACTGACTTTAATGC+AGG | 0.477186 | 7.1:-5951529 | MS.gene25649:CDS |
| GTTGAGTCCATCCAAGCAAC+TGG | 0.477635 | 7.1:-5951030 | MS.gene25649:CDS |
| GTATCACAGAAAGCAATTGT+TGG | 0.479071 | 7.1:+5951911 | None:intergenic |
| AACTGGGCAGCCCCAGAAGC+TGG | 0.486191 | 7.1:-5951415 | MS.gene25649:intron |
| GCTTGGATGGACTCAACTCC+AGG | 0.495466 | 7.1:+5951036 | None:intergenic |
| GGAACTGCTGGAATAGGCTC+TGG | 0.497641 | 7.1:+5951445 | None:intergenic |
| GGGGCTGCCCAGTTGACAGC+AGG | 0.498864 | 7.1:+5951424 | None:intergenic |
| CCAGGAGCAGGTATTTGTTG+TGG | 0.503860 | 7.1:+5951054 | None:intergenic |
| AGCAGTTCCTGCTGTCAACT+GGG | 0.509125 | 7.1:-5951431 | MS.gene25649:CDS |
| CATGTTTGGTCGATAGCAGC+AGG | 0.511174 | 7.1:+5951481 | None:intergenic |
| CCACAACAAATACCTGCTCC+TGG | 0.512625 | 7.1:-5951054 | MS.gene25649:CDS |
| TGTTTGTGTGCAGCCAATCA+AGG | 0.514122 | 7.1:-5951954 | MS.gene25649:intron |
| ATGACATCCCACTTAAGGCC+AGG | 0.514173 | 7.1:+5951767 | None:intergenic |
| AGAACAGCTCTCTGTCCATA+AGG | 0.514765 | 7.1:+5952922 | None:intergenic |
| GCTTGCCCTTGTTGTTGGCA+GGG | 0.514834 | 7.1:+5951855 | None:intergenic |
| AGATTTGTCTTGCAGCTGCA+GGG | 0.519344 | 7.1:-5951104 | MS.gene25649:intron |
| GCAGGTTCTATCCCCAATGA+TGG | 0.524423 | 7.1:-5951511 | MS.gene25649:CDS |
| CCACTTAAGGCCAGGGCGAA+TGG | 0.524759 | 7.1:+5951775 | None:intergenic |
| TAGAGAACCTGAGGAGGCAA+AGG | 0.541067 | 7.1:-5951587 | MS.gene25649:CDS |
| GTAATAGCATAATCTGGTGC+AGG | 0.546158 | 7.1:+5951544 | None:intergenic |
| AACAAGGGCAAGCACAGTAT+AGG | 0.547955 | 7.1:-5951845 | MS.gene25649:CDS |
| TGGCCTTAAGTGGGATGTCA+TGG | 0.555571 | 7.1:-5951765 | MS.gene25649:intron |
| GATTTGTCTTGCAGCTGCAG+GGG | 0.556515 | 7.1:-5951103 | MS.gene25649:intron |
| CTGCTGCTATCGACCAAACA+TGG | 0.557904 | 7.1:-5951480 | MS.gene25649:CDS |
| CGATCAAGTACCAGCTTCTG+GGG | 0.566204 | 7.1:+5951405 | None:intergenic |
| ATGGACTCAACTCCAGGAGC+AGG | 0.568466 | 7.1:+5951042 | None:intergenic |
| ATCTGATTGGTAAAAGTACC+AGG | 0.569249 | 7.1:+5952850 | None:intergenic |
| ATTGCTGGAAGGCACACGCC+TGG | 0.569818 | 7.1:-5952868 | MS.gene25649:CDS |
| CCTATGCGATATGTCGACAT+TGG | 0.570541 | 7.1:-5951881 | MS.gene25649:CDS |
| ATGCGTGGAACCATTCGCCC+TGG | 0.577456 | 7.1:-5951785 | MS.gene25649:CDS |
| AAGTTTCATTCAGTGAGCCC+AGG | 0.582162 | 7.1:-5952825 | MS.gene25649:CDS |
| AGGAGCAGGTATTTGTTGTG+GGG | 0.582996 | 7.1:+5951056 | None:intergenic |
| GTGCCTTCCAGCAATAGCAT+TGG | 0.585941 | 7.1:+5952876 | None:intergenic |
| TGAGGAGGCAAAGGAGCAAG+AGG | 0.586597 | 7.1:-5951578 | MS.gene25649:CDS |
| GTCCATCCAAGCAACTGGCT+GGG | 0.586705 | 7.1:-5951025 | MS.gene25649:CDS |
| TGGAATCCCTGCCAACAACA+AGG | 0.586772 | 7.1:-5951861 | MS.gene25649:CDS |
| TCAGTGAGGATAAGAAGCCT+GGG | 0.611983 | 7.1:+5952808 | None:intergenic |
| TGACATCCCACTTAAGGCCA+GGG | 0.615254 | 7.1:+5951768 | None:intergenic |
| CATTCGCCCTGGCCTTAAGT+GGG | 0.617158 | 7.1:-5951774 | MS.gene25649:CDS |
| GGAATCCCTGCCAACAACAA+GGG | 0.619315 | 7.1:-5951860 | MS.gene25649:CDS |
| AGGATGGTGTTGCAGATGCG+TGG | 0.623853 | 7.1:-5951800 | MS.gene25649:CDS |
| ATTTGTCTTGCAGCTGCAGG+GGG | 0.624967 | 7.1:-5951102 | MS.gene25649:intron |
| GTGCCAATGCTATTGCTGGA+AGG | 0.638251 | 7.1:-5952879 | MS.gene25649:CDS |
| CTATCCCCAATGATGGACAA+TGG | 0.660054 | 7.1:-5951504 | MS.gene25649:CDS |
| CAGGCCATTGTCCATCATTG+GGG | 0.668561 | 7.1:+5951500 | None:intergenic |
| CCAATGTCGACATATCGCAT+AGG | 0.669426 | 7.1:+5951881 | None:intergenic |
| GATCAGTTCTTGGATCAGTG+AGG | 0.719669 | 7.1:+5952794 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTGTATTATAAGAAATT+TGG | - | chr7.1:5951967-5951986 | MS.gene25649:intron | 10.0% |
| !!! | CTTTATTTTATATTCTATTA+TGG | + | chr7.1:5951463-5951482 | None:intergenic | 10.0% |
| !! | ATATTATTAAAACAGCTTAT+AGG | + | chr7.1:5951797-5951816 | None:intergenic | 15.0% |
| !! | TAATATGTTTATCCAAAATT+GGG | + | chr7.1:5951366-5951385 | None:intergenic | 15.0% |
| !!! | AAGTTTTTTTATTTTAGCTT+TGG | - | chr7.1:5951340-5951359 | MS.gene25649:intron | 15.0% |
| !!! | ACTATTTTTTCTTTTTGTAA+CGG | - | chr7.1:5952224-5952243 | MS.gene25649:intron | 15.0% |
| !!! | TGTTTTAATAATATATTGTG+TGG | - | chr7.1:5951803-5951822 | MS.gene25649:CDS | 15.0% |
| !!! | TTGTTTTTTTATGTTATTGT+GGG | - | chr7.1:5951511-5951530 | MS.gene25649:CDS | 15.0% |
| !! | AAGTTAACGAAATAAATGTT+GGG | + | chr7.1:5952742-5952761 | None:intergenic | 20.0% |
| !! | ATTAAGATGTTTATCCAAAA+AGG | + | chr7.1:5951691-5951710 | None:intergenic | 20.0% |
| !! | CATGTATATATATGAATATG+CGG | + | chr7.1:5951414-5951433 | None:intergenic | 20.0% |
| !! | CTAATATGTTTATCCAAAAT+TGG | + | chr7.1:5951367-5951386 | None:intergenic | 20.0% |
| !! | GTAATAATAAGTGCTTATAT+AGG | + | chr7.1:5951745-5951764 | None:intergenic | 20.0% |
| !! | TTAAGATGTTTATCCAAAAA+GGG | + | chr7.1:5951690-5951709 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTATGTTATTG+TGG | - | chr7.1:5951510-5951529 | MS.gene25649:CDS | 20.0% |
| !!! | TGTTTTTTTATGTTATTGTG+GGG | - | chr7.1:5951512-5951531 | MS.gene25649:CDS | 20.0% |
| ! | AGTTAACGAAATAAATGTTG+GGG | + | chr7.1:5952741-5952760 | None:intergenic | 25.0% |
| ! | CAAGTTAACGAAATAAATGT+TGG | + | chr7.1:5952743-5952762 | None:intergenic | 25.0% |
| !! | TCTCTATTTAAGATTTGTCA+GGG | - | chr7.1:5952768-5952787 | MS.gene25649:intron | 25.0% |
| !! | TTCTCTATTTAAGATTTGTC+AGG | - | chr7.1:5952767-5952786 | MS.gene25649:intron | 25.0% |
| !!! | GATTCATTGTTTTATGTGTA+GGG | - | chr7.1:5951234-5951253 | MS.gene25649:intron | 25.0% |
| !!! | TGATTCATTGTTTTATGTGT+AGG | - | chr7.1:5951233-5951252 | MS.gene25649:intron | 25.0% |
| AAACTTTGCACAAAAACCAA+TGG | + | chr7.1:5951651-5951670 | None:intergenic | 30.0% | |
| AACTTTGCACAAAAACCAAT+GGG | + | chr7.1:5951650-5951669 | None:intergenic | 30.0% | |
| AAGTCAGTAATAGCATAATC+TGG | + | chr7.1:5952428-5952447 | None:intergenic | 30.0% | |
| AAGTGCTTATATAGGATATG+AGG | + | chr7.1:5951737-5951756 | None:intergenic | 30.0% | |
| AATATATTGTGTGGAGCTTA+TGG | - | chr7.1:5951812-5951831 | MS.gene25649:CDS | 30.0% | |
| CAAGGTAAATCAATGTTGAA+GGG | + | chr7.1:5952632-5952651 | None:intergenic | 30.0% | |
| TCAAGGTAAATCAATGTTGA+AGG | + | chr7.1:5952633-5952652 | None:intergenic | 30.0% | |
| TTGATCAAGTCTATTGTCTT+GGG | - | chr7.1:5952321-5952340 | MS.gene25649:intron | 30.0% | |
| TTTGATCAAGTCTATTGTCT+TGG | - | chr7.1:5952320-5952339 | MS.gene25649:intron | 30.0% | |
| ! | CTCTATTTAAGATTTGTCAG+GGG | - | chr7.1:5952769-5952788 | MS.gene25649:intron | 30.0% |
| !!! | ATTTTAGCTTGAACCCTTTT+TGG | - | chr7.1:5951674-5951693 | MS.gene25649:intron | 30.0% |
| AAGCACTTGTAAACCAACTT+GGG | + | chr7.1:5951879-5951898 | None:intergenic | 35.0% | |
| AAGCACTTGTAAGTCTGTTT+GGG | + | chr7.1:5951588-5951607 | None:intergenic | 35.0% | |
| AAGCAGACAATCTGGTTATT+AGG | + | chr7.1:5951932-5951951 | None:intergenic | 35.0% | |
| AATTAGCAAATGCCAATGAC+AGG | + | chr7.1:5952702-5952721 | None:intergenic | 35.0% | |
| ACTTTGCACAAAAACCAATG+GGG | + | chr7.1:5951649-5951668 | None:intergenic | 35.0% | |
| ATCAAAGCTGAGAGATATCA+AGG | + | chr7.1:5952650-5952669 | None:intergenic | 35.0% | |
| ATTTCCTCTAATCCTGTCAT+TGG | - | chr7.1:5952687-5952706 | MS.gene25649:intron | 35.0% | |
| CAGGTTCTCTATAAAAGAAC+AGG | + | chr7.1:5952367-5952386 | None:intergenic | 35.0% | |
| GAATGAAACTTGCATCTGAT+TGG | + | chr7.1:5951129-5951148 | None:intergenic | 35.0% | |
| GACAATCTGGTTATTAGGTT+TGG | + | chr7.1:5951927-5951946 | None:intergenic | 35.0% | |
| GTATCACAGAAAGCAATTGT+TGG | + | chr7.1:5952055-5952074 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAACCAACT+TGG | + | chr7.1:5951880-5951899 | None:intergenic | 35.0% | |
| TAAGCACTTGTAAGTCTGTT+TGG | + | chr7.1:5951589-5951608 | None:intergenic | 35.0% | |
| ! | ACAGTATAGGATGTCTGTTT+TGG | - | chr7.1:5952131-5952150 | MS.gene25649:intron | 35.0% |
| ! | CAATGTGAAGTATCCATATG+TGG | - | chr7.1:5952266-5952285 | MS.gene25649:intron | 35.0% |
| ! | CTCAAATTTGCTCAGTATAC+TGG | - | chr7.1:5951062-5951081 | MS.gene25649:CDS | 35.0% |
| ! | GTTCTTTTATAGAGAACCTG+AGG | - | chr7.1:5952367-5952386 | MS.gene25649:intron | 35.0% |
| !! | ATCTGATTGGTAAAAGTACC+AGG | + | chr7.1:5951116-5951135 | None:intergenic | 35.0% |
| !! | GCTATTACTGACTTTAATGC+AGG | - | chr7.1:5952434-5952453 | MS.gene25649:intron | 35.0% |
| !!! | TTTTAGCTTTGGCCCAATTT+TGG | - | chr7.1:5951351-5951370 | MS.gene25649:intron | 35.0% |
| AATGCCAATGACAGGATTAG+AGG | + | chr7.1:5952694-5952713 | None:intergenic | 40.0% | |
| ACAGACAAAAGCAGACAATC+TGG | + | chr7.1:5951940-5951959 | None:intergenic | 40.0% | |
| AGAGGAAATTTGAGAGATCG+AGG | + | chr7.1:5952676-5952695 | None:intergenic | 40.0% | |
| ATGTTATTGTGGGGAGCTTA+TGG | - | chr7.1:5951521-5951540 | MS.gene25649:CDS | 40.0% | |
| GAAACCTGATGATCAGTTCT+TGG | + | chr7.1:5951182-5951201 | None:intergenic | 40.0% | |
| GAACTGCATCATTCCATGTT+TGG | + | chr7.1:5952499-5952518 | None:intergenic | 40.0% | |
| GTAATAGCATAATCTGGTGC+AGG | + | chr7.1:5952422-5952441 | None:intergenic | 40.0% | |
| GTTCAATCTGCTAGACCTTA+TGG | - | chr7.1:5951026-5951045 | MS.gene25649:CDS | 40.0% | |
| TGATCCAAGAACTGATCATC+AGG | - | chr7.1:5951175-5951194 | MS.gene25649:intron | 40.0% | |
| TTACCATGACATCCCACTTA+AGG | + | chr7.1:5952204-5952223 | None:intergenic | 40.0% | |
| ! | CTTTTATAGAGAACCTGAGG+AGG | - | chr7.1:5952370-5952389 | MS.gene25649:intron | 40.0% |
| ! | TCTTGGGTTTTCTTTGATGC+AGG | - | chr7.1:5952337-5952356 | MS.gene25649:intron | 40.0% |
| !!! | AGGATGTCTGTTTTGGCTTT+TGG | - | chr7.1:5952138-5952157 | MS.gene25649:intron | 40.0% |
| AAACCTGCCAATTCAACCGA+TGG | + | chr7.1:5952302-5952321 | None:intergenic | 45.0% | |
| AACAAGGGCAAGCACAGTAT+AGG | - | chr7.1:5952118-5952137 | MS.gene25649:intron | 45.0% | |
| AACCTGCCAATTCAACCGAT+GGG | + | chr7.1:5952301-5952320 | None:intergenic | 45.0% | |
| AAGTTTCATTCAGTGAGCCC+AGG | - | chr7.1:5951138-5951157 | MS.gene25649:intron | 45.0% | |
| AGAACAGCTCTCTGTCCATA+AGG | + | chr7.1:5951044-5951063 | None:intergenic | 45.0% | |
| AGATTTGTCTTGCAGCTGCA+GGG | - | chr7.1:5952859-5952878 | MS.gene25649:CDS | 45.0% | |
| ATCAGTGAGGATAAGAAGCC+TGG | + | chr7.1:5951159-5951178 | None:intergenic | 45.0% | |
| ATCGATCAAGTACCAGCTTC+TGG | + | chr7.1:5952563-5952582 | None:intergenic | 45.0% | |
| ATGTGGCAATTGTTCCCCAT+CGG | - | chr7.1:5952283-5952302 | MS.gene25649:intron | 45.0% | |
| CAAAAACCAATGGGGCTGTT+TGG | + | chr7.1:5951641-5951660 | None:intergenic | 45.0% | |
| CCAATGTCGACATATCGCAT+AGG | + | chr7.1:5952085-5952104 | None:intergenic | 45.0% | |
| CCTATGCGATATGTCGACAT+TGG | - | chr7.1:5952082-5952101 | MS.gene25649:intron | 45.0% | |
| CTTGTAAACCAACTTGGGAG+AGG | + | chr7.1:5951874-5951893 | None:intergenic | 45.0% | |
| GATCAGTTCTTGGATCAGTG+AGG | + | chr7.1:5951172-5951191 | None:intergenic | 45.0% | |
| TAGATTTGTCTTGCAGCTGC+AGG | - | chr7.1:5952858-5952877 | MS.gene25649:CDS | 45.0% | |
| TCAGTGAGGATAAGAAGCCT+GGG | + | chr7.1:5951158-5951177 | None:intergenic | 45.0% | |
| TCGATCAAGTACCAGCTTCT+GGG | + | chr7.1:5952562-5952581 | None:intergenic | 45.0% | |
| TGGGGAACAATTGCCACATA+TGG | + | chr7.1:5952282-5952301 | None:intergenic | 45.0% | |
| TGTTTGTGTGCAGCCAATCA+AGG | - | chr7.1:5952009-5952028 | MS.gene25649:intron | 45.0% | |
| ! | TTGTTCCCCATCGGTTGAAT+TGG | - | chr7.1:5952292-5952311 | MS.gene25649:intron | 45.0% |
| !! | AGGAGCAGGTATTTGTTGTG+GGG | + | chr7.1:5952910-5952929 | None:intergenic | 45.0% |
| !! | CAGGAGCAGGTATTTGTTGT+GGG | + | chr7.1:5952911-5952930 | None:intergenic | 45.0% |
| !! | CTATCCCCAATGATGGACAA+TGG | - | chr7.1:5952459-5952478 | MS.gene25649:intron | 45.0% |
| !!! | GTCTGTTTTGGCTTTTGGCT+AGG | - | chr7.1:5952143-5952162 | MS.gene25649:intron | 45.0% |
| !!! | GTTTTGGCTTTTGGCTAGGA+TGG | - | chr7.1:5952147-5952166 | MS.gene25649:intron | 45.0% |
| ACAGCAGGAACTGCTGGAAT+AGG | + | chr7.1:5952527-5952546 | None:intergenic | 50.0% | |
| ACCTGCCAATTCAACCGATG+GGG | + | chr7.1:5952300-5952319 | None:intergenic | 50.0% | |
| AGCAGGCCATTGTCCATCAT+TGG | + | chr7.1:5952468-5952487 | None:intergenic | 50.0% | |
| AGCAGTTCCTGCTGTCAACT+GGG | - | chr7.1:5952532-5952551 | MS.gene25649:intron | 50.0% | |
| ATGACATCCCACTTAAGGCC+AGG | + | chr7.1:5952199-5952218 | None:intergenic | 50.0% | |
| ATTTGTCTTGCAGCTGCAGG+GGG | - | chr7.1:5952861-5952880 | MS.gene25649:CDS | 50.0% | |
| CAGGCCATTGTCCATCATTG+GGG | + | chr7.1:5952466-5952485 | None:intergenic | 50.0% | |
| CATGTTTGGTCGATAGCAGC+AGG | + | chr7.1:5952485-5952504 | None:intergenic | 50.0% | |
| CCAAGAGCAGCTTCCTTGAT+TGG | + | chr7.1:5952025-5952044 | None:intergenic | 50.0% | |
| CCAATCAAGGAAGCTGCTCT+TGG | - | chr7.1:5952022-5952041 | MS.gene25649:intron | 50.0% | |
| CCACAACAAATACCTGCTCC+TGG | - | chr7.1:5952909-5952928 | MS.gene25649:CDS | 50.0% | |
| CGATCAAGTACCAGCTTCTG+GGG | + | chr7.1:5952561-5952580 | None:intergenic | 50.0% | |
| CTGCTGCTATCGACCAAACA+TGG | - | chr7.1:5952483-5952502 | MS.gene25649:intron | 50.0% | |
| GATTTGTCTTGCAGCTGCAG+GGG | - | chr7.1:5952860-5952879 | MS.gene25649:CDS | 50.0% | |
| GCAGGCCATTGTCCATCATT+GGG | + | chr7.1:5952467-5952486 | None:intergenic | 50.0% | |
| GCAGGTTCTATCCCCAATGA+TGG | - | chr7.1:5952452-5952471 | MS.gene25649:intron | 50.0% | |
| GGAATCCCTGCCAACAACAA+GGG | - | chr7.1:5952103-5952122 | MS.gene25649:intron | 50.0% | |
| GTCAATCCAAACAGCCCCAT+TGG | - | chr7.1:5951632-5951651 | MS.gene25649:intron | 50.0% | |
| GTCTTAAGCCTCTCCCAAGT+TGG | - | chr7.1:5951863-5951882 | MS.gene25649:CDS | 50.0% | |
| GTGCCAATGCTATTGCTGGA+AGG | - | chr7.1:5951084-5951103 | MS.gene25649:CDS | 50.0% | |
| GTGCCTTCCAGCAATAGCAT+TGG | + | chr7.1:5951090-5951109 | None:intergenic | 50.0% | |
| GTTGAGTCCATCCAAGCAAC+TGG | - | chr7.1:5952933-5952952 | MS.gene25649:CDS | 50.0% | |
| TAGAGAACCTGAGGAGGCAA+AGG | - | chr7.1:5952376-5952395 | MS.gene25649:intron | 50.0% | |
| TGACATCCCACTTAAGGCCA+GGG | + | chr7.1:5952198-5952217 | None:intergenic | 50.0% | |
| TGGAATCCCTGCCAACAACA+AGG | - | chr7.1:5952102-5952121 | MS.gene25649:intron | 50.0% | |
| ! | ACTGGTGCCAATGCTATTGC+TGG | - | chr7.1:5951080-5951099 | MS.gene25649:CDS | 50.0% |
| ! | ACTGTGCTTGCCCTTGTTGT+TGG | + | chr7.1:5952116-5952135 | None:intergenic | 50.0% |
| ! | CCAGGAGCAGGTATTTGTTG+TGG | + | chr7.1:5952912-5952931 | None:intergenic | 50.0% |
| ! | TGGCCTTAAGTGGGATGTCA+TGG | - | chr7.1:5952198-5952217 | MS.gene25649:intron | 50.0% |
| AGTCCATCCAAGCAACTGGC+TGG | - | chr7.1:5952937-5952956 | MS.gene25649:CDS | 55.0% | |
| ATGGACTCAACTCCAGGAGC+AGG | + | chr7.1:5952924-5952943 | None:intergenic | 55.0% | |
| CAGCAGTTCCTGCTGTCAAC+TGG | - | chr7.1:5952531-5952550 | MS.gene25649:intron | 55.0% | |
| CAGTTGACAGCAGGAACTGC+TGG | + | chr7.1:5952533-5952552 | None:intergenic | 55.0% | |
| GGAACTGCTGGAATAGGCTC+TGG | + | chr7.1:5952521-5952540 | None:intergenic | 55.0% | |
| GTCCATCCAAGCAACTGGCT+GGG | - | chr7.1:5952938-5952957 | MS.gene25649:CDS | 55.0% | |
| TCTTGCTCCTTTGCCTCCTC+AGG | + | chr7.1:5952386-5952405 | None:intergenic | 55.0% | |
| TGAGGAGGCAAAGGAGCAAG+AGG | - | chr7.1:5952385-5952404 | MS.gene25649:intron | 55.0% | |
| TTCCCAGCCAGTTGCTTGGA+TGG | + | chr7.1:5952943-5952962 | None:intergenic | 55.0% | |
| ! | GCTTGGATGGACTCAACTCC+AGG | + | chr7.1:5952930-5952949 | None:intergenic | 55.0% |
| ! | TCCCCATCGGTTGAATTGGC+AGG | - | chr7.1:5952296-5952315 | MS.gene25649:intron | 55.0% |
| !! | AGGATGGTGTTGCAGATGCG+TGG | - | chr7.1:5952163-5952182 | MS.gene25649:intron | 55.0% |
| !! | CATTCGCCCTGGCCTTAAGT+GGG | - | chr7.1:5952189-5952208 | MS.gene25649:intron | 55.0% |
| !! | GCAGGTATTTGTTGTGGGGC+TGG | + | chr7.1:5952906-5952925 | None:intergenic | 55.0% |
| !! | GCTTGCCCTTGTTGTTGGCA+GGG | + | chr7.1:5952111-5952130 | None:intergenic | 55.0% |
| !! | TGCTTGCCCTTGTTGTTGGC+AGG | + | chr7.1:5952112-5952131 | None:intergenic | 55.0% |
| ATGCGTGGAACCATTCGCCC+TGG | - | chr7.1:5952178-5952197 | MS.gene25649:intron | 60.0% | |
| CCACTTAAGGCCAGGGCGAA+TGG | + | chr7.1:5952191-5952210 | None:intergenic | 60.0% | |
| TGCAGCTGCAGGGGGTGATT+GGG | - | chr7.1:5952869-5952888 | MS.gene25649:CDS | 60.0% | |
| TTGCAGCTGCAGGGGGTGAT+TGG | - | chr7.1:5952868-5952887 | MS.gene25649:CDS | 60.0% | |
| ! | ATTGCTGGAAGGCACACGCC+TGG | - | chr7.1:5951095-5951114 | MS.gene25649:intron | 60.0% |
| !! | CCATTCGCCCTGGCCTTAAG+TGG | - | chr7.1:5952188-5952207 | MS.gene25649:intron | 60.0% |
| AACTGGGCAGCCCCAGAAGC+TGG | - | chr7.1:5952548-5952567 | MS.gene25649:intron | 65.0% | |
| GCAGCTGCAGGGGGTGATTG+GGG | - | chr7.1:5952870-5952889 | MS.gene25649:CDS | 65.0% | |
| GGGGCTGCCCAGTTGACAGC+AGG | + | chr7.1:5952542-5952561 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 5951020 | 5952965 | 5951020 | ID=MS.gene25649 |
| chr7.1 | mRNA | 5951020 | 5952965 | 5951020 | ID=MS.gene25649.t1;Parent=MS.gene25649 |
| chr7.1 | exon | 5952789 | 5952965 | 5952789 | ID=MS.gene25649.t1.exon1;Parent=MS.gene25649.t1 |
| chr7.1 | CDS | 5952789 | 5952965 | 5952789 | ID=cds.MS.gene25649.t1;Parent=MS.gene25649.t1 |
| chr7.1 | exon | 5951766 | 5951963 | 5951766 | ID=MS.gene25649.t1.exon2;Parent=MS.gene25649.t1 |
| chr7.1 | CDS | 5951766 | 5951963 | 5951766 | ID=cds.MS.gene25649.t1;Parent=MS.gene25649.t1 |
| chr7.1 | exon | 5951416 | 5951626 | 5951416 | ID=MS.gene25649.t1.exon3;Parent=MS.gene25649.t1 |
| chr7.1 | CDS | 5951416 | 5951626 | 5951416 | ID=cds.MS.gene25649.t1;Parent=MS.gene25649.t1 |
| chr7.1 | exon | 5951020 | 5951111 | 5951020 | ID=MS.gene25649.t1.exon4;Parent=MS.gene25649.t1 |
| chr7.1 | CDS | 5951020 | 5951111 | 5951020 | ID=cds.MS.gene25649.t1;Parent=MS.gene25649.t1 |
| Gene Sequence |
| Protein sequence |
