Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25738.t1 | XP_013461166.1 | 91.6 | 358 | 30 | 0 | 1 | 358 | 1 | 358 | 6.80E-165 | 590.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25738.t1 | Q6L8G0 | 56.6 | 316 | 128 | 2 | 44 | 358 | 46 | 353 | 4.3e-91 | 336.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25738.t1 | B7FI47 | 91.6 | 358 | 30 | 0 | 1 | 358 | 1 | 358 | 4.9e-165 | 590.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056981 | MS.gene25738 | 0.804286 | 2.32E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene038972 | MS.gene25738 | PPI |
| MS.gene50197 | MS.gene25738 | PPI |
| MS.gene25738 | MS.gene54167 | PPI |
| MS.gene62494 | MS.gene25738 | PPI |
| MS.gene045723 | MS.gene25738 | PPI |
| MS.gene066193 | MS.gene25738 | PPI |
| MS.gene25738 | MS.gene56999 | PPI |
| MS.gene009810 | MS.gene25738 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25738.t1 | MTR_3g081580 | 96.089 | 358 | 14 | 0 | 1 | 358 | 1 | 358 | 0.0 | 677 |
| MS.gene25738.t1 | MTR_3g081640 | 86.538 | 364 | 40 | 4 | 1 | 358 | 1 | 361 | 0.0 | 610 |
| MS.gene25738.t1 | MTR_3g082050 | 83.844 | 359 | 47 | 3 | 1 | 358 | 1 | 349 | 0.0 | 575 |
| MS.gene25738.t1 | MTR_3g082050 | 84.046 | 351 | 48 | 3 | 9 | 358 | 34 | 377 | 0.0 | 563 |
| MS.gene25738.t1 | MTR_3g082050 | 84.682 | 346 | 45 | 3 | 14 | 358 | 34 | 372 | 0.0 | 556 |
| MS.gene25738.t1 | MTR_3g081690 | 82.941 | 340 | 47 | 3 | 1 | 339 | 1 | 330 | 0.0 | 536 |
| MS.gene25738.t1 | MTR_3g081690 | 83.792 | 327 | 45 | 3 | 14 | 339 | 34 | 353 | 0.0 | 519 |
| MS.gene25738.t1 | MTR_2g064310 | 59.544 | 351 | 126 | 5 | 16 | 358 | 16 | 358 | 2.22e-141 | 405 |
| MS.gene25738.t1 | MTR_3g081690 | 79.638 | 221 | 38 | 2 | 120 | 339 | 25 | 239 | 1.06e-116 | 338 |
| MS.gene25738.t1 | MTR_4g083570 | 50.000 | 348 | 163 | 4 | 11 | 358 | 14 | 350 | 1.96e-113 | 334 |
| MS.gene25738.t1 | MTR_8g105030 | 49.153 | 354 | 162 | 5 | 6 | 352 | 5 | 347 | 2.58e-111 | 330 |
| MS.gene25738.t1 | MTR_6g007687 | 50.145 | 345 | 154 | 4 | 15 | 355 | 14 | 344 | 3.53e-111 | 328 |
| MS.gene25738.t1 | MTR_3g104400 | 46.832 | 363 | 158 | 5 | 29 | 358 | 5 | 365 | 3.98e-101 | 303 |
| MS.gene25738.t1 | MTR_3g081690 | 79.487 | 195 | 33 | 2 | 146 | 339 | 7 | 195 | 2.67e-100 | 295 |
| MS.gene25738.t1 | MTR_3g081690 | 80.000 | 195 | 32 | 2 | 146 | 339 | 29 | 217 | 3.72e-100 | 296 |
| MS.gene25738.t1 | MTR_1g016120 | 46.409 | 362 | 162 | 6 | 29 | 358 | 13 | 374 | 2.65e-96 | 291 |
| MS.gene25738.t1 | MTR_5g071990 | 41.570 | 344 | 166 | 9 | 24 | 358 | 1 | 318 | 2.68e-75 | 235 |
| MS.gene25738.t1 | MTR_3g081630 | 42.520 | 127 | 26 | 4 | 77 | 194 | 20 | 108 | 2.26e-20 | 86.3 |
| MS.gene25738.t1 | MTR_4g006710 | 44.318 | 88 | 48 | 1 | 37 | 124 | 26 | 112 | 2.28e-15 | 72.0 |
| MS.gene25738.t1 | MTR_3g073950 | 30.556 | 144 | 47 | 3 | 4 | 147 | 2 | 92 | 3.66e-14 | 68.9 |
| MS.gene25738.t1 | MTR_2g097580 | 22.924 | 301 | 195 | 10 | 65 | 357 | 64 | 335 | 1.99e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25738.t1 | AT1G05300 | 57.738 | 336 | 135 | 5 | 26 | 358 | 29 | 360 | 1.01e-132 | 383 |
| MS.gene25738.t1 | AT3G12750 | 53.203 | 359 | 155 | 4 | 3 | 358 | 7 | 355 | 2.14e-131 | 380 |
| MS.gene25738.t1 | AT2G32270 | 53.117 | 369 | 132 | 4 | 1 | 358 | 1 | 339 | 3.30e-125 | 363 |
| MS.gene25738.t1 | AT1G31260 | 51.190 | 336 | 156 | 3 | 27 | 358 | 33 | 364 | 3.90e-116 | 341 |
| MS.gene25738.t1 | AT5G62160 | 49.003 | 351 | 165 | 5 | 14 | 358 | 13 | 355 | 3.44e-108 | 321 |
| MS.gene25738.t1 | AT4G19690 | 46.742 | 353 | 166 | 4 | 11 | 358 | 12 | 347 | 1.14e-101 | 304 |
| MS.gene25738.t1 | AT2G04032 | 46.707 | 334 | 168 | 3 | 30 | 358 | 37 | 365 | 4.50e-101 | 303 |
| MS.gene25738.t1 | AT1G10970 | 45.946 | 370 | 154 | 6 | 30 | 358 | 10 | 374 | 6.16e-98 | 295 |
| MS.gene25738.t1 | AT1G10970 | 45.946 | 370 | 154 | 6 | 30 | 358 | 10 | 374 | 6.16e-98 | 295 |
| MS.gene25738.t1 | AT4G19680 | 45.326 | 353 | 181 | 5 | 9 | 358 | 7 | 350 | 1.21e-96 | 291 |
| MS.gene25738.t1 | AT1G60960 | 42.065 | 397 | 176 | 7 | 16 | 358 | 19 | 415 | 6.50e-94 | 286 |
| MS.gene25738.t1 | AT1G60960 | 42.065 | 397 | 176 | 7 | 16 | 358 | 29 | 425 | 8.48e-94 | 286 |
| MS.gene25738.t1 | AT4G33020 | 41.622 | 370 | 173 | 5 | 29 | 358 | 25 | 391 | 3.68e-88 | 271 |
| MS.gene25738.t1 | AT4G33020 | 41.210 | 347 | 163 | 4 | 50 | 358 | 1 | 344 | 3.54e-81 | 251 |
| MS.gene25738.t1 | AT1G05300 | 53.112 | 241 | 106 | 5 | 26 | 263 | 29 | 265 | 1.18e-77 | 239 |
| MS.gene25738.t1 | AT2G30080 | 41.667 | 336 | 170 | 7 | 37 | 358 | 18 | 341 | 1.18e-76 | 239 |
| MS.gene25738.t1 | AT4G19680 | 42.520 | 254 | 134 | 5 | 9 | 259 | 7 | 251 | 1.16e-58 | 191 |
| MS.gene25738.t1 | AT4G19690 | 44.056 | 143 | 75 | 2 | 11 | 148 | 12 | 154 | 1.58e-32 | 121 |
| MS.gene25738.t1 | AT1G60960 | 43.919 | 148 | 78 | 2 | 16 | 158 | 29 | 176 | 7.06e-31 | 119 |
Find 80 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAAACCATTATTCTAAA+AGG | 0.128438 | 3.2:+71392131 | MS.gene25738:CDS |
| GAGTCTATCAATTACAATTA+TGG | 0.222804 | 3.2:+71393918 | MS.gene25738:CDS |
| CTTTGCTGCCGGTGTGATTT+TGG | 0.232022 | 3.2:+71391952 | MS.gene25738:CDS |
| CCATATGTCTTCTGTTTCTT+CGG | 0.263664 | 3.2:+71392255 | MS.gene25738:CDS |
| TGCAGCTACCAATGGTCTTA+TGG | 0.290725 | 3.2:-71392736 | None:intergenic |
| ATCTGGGATCTTAATCTATA+TGG | 0.294899 | 3.2:+71394059 | MS.gene25738:CDS |
| ATCTTCAATGCAGCTTCATC+TGG | 0.295405 | 3.2:+71394042 | MS.gene25738:CDS |
| ATTGTTCACTCCGTTATAAT+AGG | 0.317071 | 3.2:+71392681 | MS.gene25738:CDS |
| AGTCTATCAATTACAATTAT+GGG | 0.317862 | 3.2:+71393919 | MS.gene25738:CDS |
| GTAGGAATTGCAATTGGAAT+AGG | 0.342478 | 3.2:+71393967 | MS.gene25738:CDS |
| CATATGTCTTCTGTTTCTTC+GGG | 0.345408 | 3.2:+71392256 | MS.gene25738:CDS |
| TTGTTTAAACAAACATCCTT+GGG | 0.346945 | 3.2:+71392027 | MS.gene25738:CDS |
| CACCGCTATGGGGACTCTTA+TGG | 0.349455 | 3.2:+71392084 | MS.gene25738:CDS |
| TGCAATATATCTCTTCTATT+AGG | 0.359071 | 3.2:+71394153 | MS.gene25738:CDS |
| CCAACTGCTCTTATTGTTGA+AGG | 0.371910 | 3.2:+71394018 | MS.gene25738:CDS |
| TCATGATCCTTCTCCACATC+TGG | 0.377311 | 3.2:-71392184 | None:intergenic |
| TTCTTTGAAGGCATGGGACT+TGG | 0.380444 | 3.2:+71392774 | MS.gene25738:CDS |
| TTCTAAAAGGGCACCGGCAC+AGG | 0.381340 | 3.2:+71392144 | MS.gene25738:CDS |
| TTCATAATAGGTATTAGAGT+TGG | 0.383535 | 3.2:+71392653 | MS.gene25738:intron |
| CGTTATAATAGGAATTTCTC+TGG | 0.388253 | 3.2:+71392692 | MS.gene25738:CDS |
| TCATAATAGGTATTAGAGTT+GGG | 0.404865 | 3.2:+71392654 | MS.gene25738:intron |
| TTATGTCTCTTATAGCCAAA+TGG | 0.421117 | 3.2:+71394184 | MS.gene25738:CDS |
| TCAAAACCATTATTCTAAAA+GGG | 0.424815 | 3.2:+71392132 | MS.gene25738:CDS |
| ATTCCAATTGCAATTCCTAC+TGG | 0.435916 | 3.2:-71393964 | None:intergenic |
| CCGAAGAAACAGAAGACATA+TGG | 0.436351 | 3.2:-71392255 | None:intergenic |
| CTTGTTTAAACAAACATCCT+TGG | 0.438216 | 3.2:+71392026 | MS.gene25738:CDS |
| CATCCTTGGATTCATAAAAT+CGG | 0.439919 | 3.2:-71394103 | None:intergenic |
| TATAAACATCTAAGCCCATT+TGG | 0.452842 | 3.2:-71394199 | None:intergenic |
| CATCAGTTCTTTGAAGGCAT+GGG | 0.453138 | 3.2:+71392768 | MS.gene25738:CDS |
| TATGTCTCTTATAGCCAAAT+GGG | 0.456505 | 3.2:+71394185 | MS.gene25738:CDS |
| TCATCAGTTCTTTGAAGGCA+TGG | 0.458960 | 3.2:+71392767 | MS.gene25738:CDS |
| TAGGAATTGCAATTGGAATA+GGG | 0.459058 | 3.2:+71393968 | MS.gene25738:CDS |
| ATACTAGTTGCAAGTGCAAT+TGG | 0.459070 | 3.2:+71391854 | MS.gene25738:CDS |
| TATCTTATAGCGAAGAGCTT+TGG | 0.461754 | 3.2:-71391816 | None:intergenic |
| ATATCTCTTCTATTAGGATC+TGG | 0.463707 | 3.2:+71394159 | MS.gene25738:CDS |
| ATCATCAAAGCCTTTGCTGC+CGG | 0.466007 | 3.2:+71391941 | MS.gene25738:CDS |
| GTAAGATTCTCAAAAGCATC+AGG | 0.471092 | 3.2:-71391998 | None:intergenic |
| GTGGCTATGTGCACCGCTAT+GGG | 0.473126 | 3.2:+71392073 | MS.gene25738:CDS |
| AGGAAGCACGTGAATGAAAC+CGG | 0.480642 | 3.2:-71391978 | None:intergenic |
| CAACAGAACTTCTTCGCCAT+AGG | 0.493431 | 3.2:+71392284 | MS.gene25738:CDS |
| AAGAGTGGTAGACTTCGATT+AGG | 0.493822 | 3.2:+71394129 | MS.gene25738:CDS |
| CGAAGAAACAGAAGACATAT+GGG | 0.494314 | 3.2:-71392254 | None:intergenic |
| TGTGGCTATGTGCACCGCTA+TGG | 0.496742 | 3.2:+71392072 | MS.gene25738:CDS |
| ACTCCAGTAGGAATTGCAAT+TGG | 0.501535 | 3.2:+71393961 | MS.gene25738:CDS |
| AGTGATACCGGCGTTAAGCC+CGG | 0.503669 | 3.2:+71391901 | MS.gene25738:CDS |
| CAGAGAAATTCCTATTATAA+CGG | 0.509686 | 3.2:-71392691 | None:intergenic |
| CTATTAGAGTCGGGATTACA+AGG | 0.509891 | 3.2:-71391748 | None:intergenic |
| CATTCTGCGGCTATTAGAGT+CGG | 0.511508 | 3.2:-71391758 | None:intergenic |
| ATACCTGTGTTATGACCCTA+TGG | 0.512934 | 3.2:-71392300 | None:intergenic |
| GGTATCACTTTGCCTAAAAG+TGG | 0.526114 | 3.2:-71391887 | None:intergenic |
| CAAGGATGTTTGTTTAAACA+AGG | 0.526238 | 3.2:-71392025 | None:intergenic |
| ACCTCACTCTCAACCTGTGC+CGG | 0.532275 | 3.2:-71392157 | None:intergenic |
| AACAGAACTTCTTCGCCATA+GGG | 0.534397 | 3.2:+71392285 | MS.gene25738:CDS |
| CCTTCAACAATAAGAGCAGT+TGG | 0.537636 | 3.2:-71394018 | None:intergenic |
| CAAAATCACACCGGCAGCAA+AGG | 0.538156 | 3.2:-71391951 | None:intergenic |
| TCCTAAAACCATAAGACCAT+TGG | 0.542272 | 3.2:+71392728 | MS.gene25738:CDS |
| TGGCGAAGAAGTTCTGTTGA+CGG | 0.549845 | 3.2:-71392280 | None:intergenic |
| ATAGCCACAAAACCAGTGAA+TGG | 0.552941 | 3.2:-71392058 | None:intergenic |
| ATTCTGCGGCTATTAGAGTC+GGG | 0.557264 | 3.2:-71391757 | None:intergenic |
| TCTTCAATGCAGCTTCATCT+GGG | 0.563225 | 3.2:+71394043 | MS.gene25738:CDS |
| TGGCTATGTGCACCGCTATG+GGG | 0.578981 | 3.2:+71392074 | MS.gene25738:CDS |
| TTTGCTTTGACTACTCCAGT+AGG | 0.595259 | 3.2:+71393949 | MS.gene25738:CDS |
| GTTATAATAGGAATTTCTCT+GGG | 0.595731 | 3.2:+71392693 | MS.gene25738:CDS |
| CCATTATTCTAAAAGGGCAC+CGG | 0.600771 | 3.2:+71392138 | MS.gene25738:CDS |
| TGCATCACATGTGCATTCTG+CGG | 0.612771 | 3.2:-71391771 | None:intergenic |
| ACCGGCACAGGTTGAGAGTG+AGG | 0.614701 | 3.2:+71392156 | MS.gene25738:CDS |
| AAAGTCAATGCAGCTACCAA+TGG | 0.627560 | 3.2:-71392744 | None:intergenic |
| GGTAACACCAGATGTGGAGA+AGG | 0.630798 | 3.2:+71392177 | MS.gene25738:CDS |
| GAGTGAGGTAACACCAGATG+TGG | 0.643136 | 3.2:+71392171 | MS.gene25738:CDS |
| TCGCCATAGGGTCATAACAC+AGG | 0.643471 | 3.2:+71392297 | MS.gene25738:CDS |
| TGTTTAAACAAACATCCTTG+GGG | 0.647235 | 3.2:+71392028 | MS.gene25738:CDS |
| ACTTGGAAGTTGTATAACAC+AGG | 0.657485 | 3.2:+71392791 | MS.gene25738:CDS |
| AATCCAAGGATGCAAAAGAG+TGG | 0.658857 | 3.2:+71394114 | MS.gene25738:CDS |
| GTTCATACTCATGCTTCACA+TGG | 0.660988 | 3.2:+71392220 | MS.gene25738:CDS |
| GTGAATGGAAAATCACCCCA+AGG | 0.670551 | 3.2:-71392043 | None:intergenic |
| GAAGGATCATGAAGGACACG+TGG | 0.676323 | 3.2:+71392195 | MS.gene25738:CDS |
| ACCGGTTGCCAAAATCACAC+CGG | 0.684552 | 3.2:-71391960 | None:intergenic |
| GATGTGGAGAAGGATCATGA+AGG | 0.713520 | 3.2:+71392187 | MS.gene25738:CDS |
| GAAGAAACAGAAGACATATG+GGG | 0.732324 | 3.2:-71392253 | None:intergenic |
| AACCATAAGAGTCCCCATAG+CGG | 0.744809 | 3.2:-71392086 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTTATTCAAAAGAA+GGG | - | chr3.2:71392419-71392438 | None:intergenic | 10.0% |
| !! | TTATATATTTATTCAAAAGA+AGG | - | chr3.2:71392420-71392439 | None:intergenic | 10.0% |
| !!! | AATTATTTTGATTTCATAAT+AGG | + | chr3.2:71392641-71392660 | MS.gene25738:intron | 10.0% |
| !! | AAAACATATATCAACATAAA+TGG | - | chr3.2:71392352-71392371 | None:intergenic | 15.0% |
| !!! | AATTTTTCTAATTTCAATCA+TGG | + | chr3.2:71393519-71393538 | MS.gene25738:intron | 15.0% |
| !!! | ATGAAAAATATATCTTTTTC+CGG | - | chr3.2:71391923-71391942 | None:intergenic | 15.0% |
| !!! | CATATTTCTTAATTTGTATT+GGG | + | chr3.2:71393443-71393462 | MS.gene25738:intron | 15.0% |
| !!! | TCATATTTCTTAATTTGTAT+TGG | + | chr3.2:71393442-71393461 | MS.gene25738:intron | 15.0% |
| !!! | TTCATATATTGATTGAAATA+CGG | + | chr3.2:71392597-71392616 | MS.gene25738:intron | 15.0% |
| !! | AAACTTCATTAAAAAAACCA+AGG | - | chr3.2:71393122-71393141 | None:intergenic | 20.0% |
| !! | AAATTCAAATTTCATGCAAA+AGG | - | chr3.2:71393504-71393523 | None:intergenic | 20.0% |
| !! | AAGAAAAACATATTAAAGAG+TGG | - | chr3.2:71393419-71393438 | None:intergenic | 20.0% |
| !! | AGTCTATCAATTACAATTAT+GGG | + | chr3.2:71393919-71393938 | MS.gene25738:CDS | 20.0% |
| !! | TAGAAAATAGTGATAGTAAA+TGG | - | chr3.2:71393663-71393682 | None:intergenic | 20.0% |
| !! | TATCTTTGAATAAACAATAG+TGG | - | chr3.2:71393331-71393350 | None:intergenic | 20.0% |
| !! | TATTTCCAATGCTATTAAAT+TGG | - | chr3.2:71393732-71393751 | None:intergenic | 20.0% |
| !! | TTCAAAACCATTATTCTAAA+AGG | + | chr3.2:71392131-71392150 | MS.gene25738:CDS | 20.0% |
| !! | TTTAATGAAGTTTCAAATGT+AGG | + | chr3.2:71393129-71393148 | MS.gene25738:intron | 20.0% |
| !!! | ATCTTTTGAACATATGATAT+AGG | - | chr3.2:71393300-71393319 | None:intergenic | 20.0% |
| !!! | TCAAAACCATTATTCTAAAA+GGG | + | chr3.2:71392132-71392151 | MS.gene25738:CDS | 20.0% |
| !!! | TGAAAAATATATCTTTTTCC+GGG | - | chr3.2:71391922-71391941 | None:intergenic | 20.0% |
| ! | ACACAAACTATAGAAAAGAT+AGG | + | chr3.2:71393081-71393100 | MS.gene25738:intron | 25.0% |
| ! | CAGAGAAATTCCTATTATAA+CGG | - | chr3.2:71392694-71392713 | None:intergenic | 25.0% |
| ! | GAGTCTATCAATTACAATTA+TGG | + | chr3.2:71393918-71393937 | MS.gene25738:CDS | 25.0% |
| ! | GTTATAATAGGAATTTCTCT+GGG | + | chr3.2:71392693-71392712 | MS.gene25738:CDS | 25.0% |
| ! | GTTTACCAATTTAATAGCAT+TGG | + | chr3.2:71393724-71393743 | MS.gene25738:intron | 25.0% |
| ! | TAAGTCAGCAAACAATTATA+AGG | - | chr3.2:71393866-71393885 | None:intergenic | 25.0% |
| ! | TATGATATAGGAACAAACAA+TGG | - | chr3.2:71393288-71393307 | None:intergenic | 25.0% |
| ! | TCATAATAGGTATTAGAGTT+GGG | + | chr3.2:71392654-71392673 | MS.gene25738:intron | 25.0% |
| ! | TGCAATATATCTCTTCTATT+AGG | + | chr3.2:71394153-71394172 | MS.gene25738:CDS | 25.0% |
| ! | TTCATAATAGGTATTAGAGT+TGG | + | chr3.2:71392653-71392672 | MS.gene25738:intron | 25.0% |
| ! | TTGTTTAAACAAACATCCTT+GGG | + | chr3.2:71392027-71392046 | MS.gene25738:CDS | 25.0% |
| !! | ATATATTGATTGAAATACGG+TGG | + | chr3.2:71392600-71392619 | MS.gene25738:intron | 25.0% |
| !! | ATTTGATTTCTGATGAGATT+CGG | - | chr3.2:71393572-71393591 | None:intergenic | 25.0% |
| !! | GTGAACTTTTCAATAAACTT+GGG | + | chr3.2:71393156-71393175 | MS.gene25738:intron | 25.0% |
| !! | TGTGAACTTTTCAATAAACT+TGG | + | chr3.2:71393155-71393174 | MS.gene25738:intron | 25.0% |
| !!! | ATAATTGTTTGCTGACTTAT+TGG | + | chr3.2:71393867-71393886 | MS.gene25738:intron | 25.0% |
| AATTGGTAAACCTTTAGTTG+TGG | - | chr3.2:71393715-71393734 | None:intergenic | 30.0% | |
| ATATCTCTTCTATTAGGATC+TGG | + | chr3.2:71394159-71394178 | MS.gene25738:CDS | 30.0% | |
| ATTGTTCACTCCGTTATAAT+AGG | + | chr3.2:71392681-71392700 | MS.gene25738:CDS | 30.0% | |
| CAAGGATGTTTGTTTAAACA+AGG | - | chr3.2:71392028-71392047 | None:intergenic | 30.0% | |
| CATCCTTGGATTCATAAAAT+CGG | - | chr3.2:71394106-71394125 | None:intergenic | 30.0% | |
| CATTGGAAATACTTGCAAAA+AGG | + | chr3.2:71393741-71393760 | MS.gene25738:intron | 30.0% | |
| CGTTATAATAGGAATTTCTC+TGG | + | chr3.2:71392692-71392711 | MS.gene25738:CDS | 30.0% | |
| CTAGTGTGAGTAATATTCAA+AGG | - | chr3.2:71393692-71393711 | None:intergenic | 30.0% | |
| CTTGTTTAAACAAACATCCT+TGG | + | chr3.2:71392026-71392045 | MS.gene25738:CDS | 30.0% | |
| TAGGAATTGCAATTGGAATA+GGG | + | chr3.2:71393968-71393987 | MS.gene25738:CDS | 30.0% | |
| TATGTCTCTTATAGCCAAAT+GGG | + | chr3.2:71394185-71394204 | MS.gene25738:CDS | 30.0% | |
| TGTTTAAACAAACATCCTTG+GGG | + | chr3.2:71392028-71392047 | MS.gene25738:CDS | 30.0% | |
| TTATGTCTCTTATAGCCAAA+TGG | + | chr3.2:71394184-71394203 | MS.gene25738:CDS | 30.0% | |
| ! | ACTTTTCATCAGTTCTTTGA+AGG | + | chr3.2:71392762-71392781 | MS.gene25738:CDS | 30.0% |
| ! | ATCTGGGATCTTAATCTATA+TGG | + | chr3.2:71394059-71394078 | MS.gene25738:CDS | 30.0% |
| ! | GAATAAACAATAGTGGAGTT+TGG | - | chr3.2:71393324-71393343 | None:intergenic | 30.0% |
| !! | AAACTATTTCTGACTGTACA+TGG | + | chr3.2:71392941-71392960 | MS.gene25738:intron | 30.0% |
| !! | AACTATTTCTGACTGTACAT+GGG | + | chr3.2:71392942-71392961 | MS.gene25738:intron | 30.0% |
| !!! | ATGGTTTTGAAAATAAGCAG+TGG | - | chr3.2:71392122-71392141 | None:intergenic | 30.0% |
| !!! | GTTATGAGAACTCTTTTTTG+CGG | - | chr3.2:71393477-71393496 | None:intergenic | 30.0% |
| ACTTGGAAGTTGTATAACAC+AGG | + | chr3.2:71392791-71392810 | MS.gene25738:CDS | 35.0% | |
| ATACTAGTTGCAAGTGCAAT+TGG | + | chr3.2:71391854-71391873 | MS.gene25738:CDS | 35.0% | |
| ATTCCAATTGCAATTCCTAC+TGG | - | chr3.2:71393967-71393986 | None:intergenic | 35.0% | |
| CGAAGAAACAGAAGACATAT+GGG | - | chr3.2:71392257-71392276 | None:intergenic | 35.0% | |
| GAAGAAACAGAAGACATATG+GGG | - | chr3.2:71392256-71392275 | None:intergenic | 35.0% | |
| GTAGGAATTGCAATTGGAAT+AGG | + | chr3.2:71393967-71393986 | MS.gene25738:CDS | 35.0% | |
| TATCTTATAGCGAAGAGCTT+TGG | - | chr3.2:71391819-71391838 | None:intergenic | 35.0% | |
| TCCTAAAACCATAAGACCAT+TGG | + | chr3.2:71392728-71392747 | MS.gene25738:CDS | 35.0% | |
| TTGAGTGATATGCAAACACA+TGG | - | chr3.2:71392969-71392988 | None:intergenic | 35.0% | |
| ! | AAAGAGTGGTGCTAGAAAAA+GGG | - | chr3.2:71393405-71393424 | None:intergenic | 35.0% |
| ! | ACTTTTAGGCAAAGTGATAC+CGG | + | chr3.2:71391889-71391908 | MS.gene25738:CDS | 35.0% |
| ! | CATATGTCTTCTGTTTCTTC+GGG | + | chr3.2:71392256-71392275 | MS.gene25738:CDS | 35.0% |
| ! | CCATATGTCTTCTGTTTCTT+CGG | + | chr3.2:71392255-71392274 | MS.gene25738:CDS | 35.0% |
| ! | GGATAAGACTTTTCAAACCT+TGG | + | chr3.2:71393102-71393121 | MS.gene25738:intron | 35.0% |
| ! | TAAAGAGTGGTGCTAGAAAA+AGG | - | chr3.2:71393406-71393425 | None:intergenic | 35.0% |
| ! | TGTGACCAATGCATTTTGTT+GGG | + | chr3.2:71393259-71393278 | MS.gene25738:intron | 35.0% |
| !! | GGTGTTTGTATTCCACTTTT+AGG | + | chr3.2:71391875-71391894 | MS.gene25738:CDS | 35.0% |
| !! | GTAAGATTCTCAAAAGCATC+AGG | - | chr3.2:71392001-71392020 | None:intergenic | 35.0% |
| !!! | ACCAATGGTCTTATGGTTTT+AGG | - | chr3.2:71392732-71392751 | None:intergenic | 35.0% |
| !!! | TTTTCCATTCACTGGTTTTG+TGG | + | chr3.2:71392054-71392073 | MS.gene25738:CDS | 35.0% |
| AAAGTCAATGCAGCTACCAA+TGG | - | chr3.2:71392747-71392766 | None:intergenic | 40.0% | |
| AACAGAACTTCTTCGCCATA+GGG | + | chr3.2:71392285-71392304 | MS.gene25738:CDS | 40.0% | |
| AAGAGTGGTAGACTTCGATT+AGG | + | chr3.2:71394129-71394148 | MS.gene25738:CDS | 40.0% | |
| AATCCAAGGATGCAAAAGAG+TGG | + | chr3.2:71394114-71394133 | MS.gene25738:CDS | 40.0% | |
| ACTCCAGTAGGAATTGCAAT+TGG | + | chr3.2:71393961-71393980 | MS.gene25738:CDS | 40.0% | |
| ATACCTGTGTTATGACCCTA+TGG | - | chr3.2:71392303-71392322 | None:intergenic | 40.0% | |
| ATAGCCACAAAACCAGTGAA+TGG | - | chr3.2:71392061-71392080 | None:intergenic | 40.0% | |
| ATCTTCAATGCAGCTTCATC+TGG | + | chr3.2:71394042-71394061 | MS.gene25738:CDS | 40.0% | |
| ATTGGATGTGTGATCATTGC+AGG | + | chr3.2:71393885-71393904 | MS.gene25738:intron | 40.0% | |
| CAACAACCAAACCAAACACA+TGG | - | chr3.2:71393057-71393076 | None:intergenic | 40.0% | |
| CCAACTGCTCTTATTGTTGA+AGG | + | chr3.2:71394018-71394037 | MS.gene25738:CDS | 40.0% | |
| CCGAAGAAACAGAAGACATA+TGG | - | chr3.2:71392258-71392277 | None:intergenic | 40.0% | |
| CCTTCAACAATAAGAGCAGT+TGG | - | chr3.2:71394021-71394040 | None:intergenic | 40.0% | |
| CTATTAGAGTCGGGATTACA+AGG | - | chr3.2:71391751-71391770 | None:intergenic | 40.0% | |
| GGAAACCCAACAAAATGCAT+TGG | - | chr3.2:71393267-71393286 | None:intergenic | 40.0% | |
| GGTATCACTTTGCCTAAAAG+TGG | - | chr3.2:71391890-71391909 | None:intergenic | 40.0% | |
| GTTCATACTCATGCTTCACA+TGG | + | chr3.2:71392220-71392239 | MS.gene25738:CDS | 40.0% | |
| TCTTCAATGCAGCTTCATCT+GGG | + | chr3.2:71394043-71394062 | MS.gene25738:CDS | 40.0% | |
| TTGGTCACACAAAGATTGAG+AGG | - | chr3.2:71393248-71393267 | None:intergenic | 40.0% | |
| TTTGCTTTGACTACTCCAGT+AGG | + | chr3.2:71393949-71393968 | MS.gene25738:CDS | 40.0% | |
| ! | CATCAGTTCTTTGAAGGCAT+GGG | + | chr3.2:71392768-71392787 | MS.gene25738:CDS | 40.0% |
| ! | CCATTATTCTAAAAGGGCAC+CGG | + | chr3.2:71392138-71392157 | MS.gene25738:CDS | 40.0% |
| ! | GTGTGACCAATGCATTTTGT+TGG | + | chr3.2:71393258-71393277 | MS.gene25738:intron | 40.0% |
| ! | TCATCAGTTCTTTGAAGGCA+TGG | + | chr3.2:71392767-71392786 | MS.gene25738:CDS | 40.0% |
| ! | TTCTGATGAGATTCGGTTGA+AGG | - | chr3.2:71393565-71393584 | None:intergenic | 40.0% |
| !!! | CTGCCGATTTTATGAATCCA+AGG | + | chr3.2:71394100-71394119 | MS.gene25738:CDS | 40.0% |
| AACCATAAGAGTCCCCATAG+CGG | - | chr3.2:71392089-71392108 | None:intergenic | 45.0% | |
| ATCATCAAAGCCTTTGCTGC+CGG | + | chr3.2:71391941-71391960 | MS.gene25738:CDS | 45.0% | |
| ATTCTGCGGCTATTAGAGTC+GGG | - | chr3.2:71391760-71391779 | None:intergenic | 45.0% | |
| CAACAGAACTTCTTCGCCAT+AGG | + | chr3.2:71392284-71392303 | MS.gene25738:CDS | 45.0% | |
| CATTCTGCGGCTATTAGAGT+CGG | - | chr3.2:71391761-71391780 | None:intergenic | 45.0% | |
| CTCACACTAGCCACAACTAA+AGG | + | chr3.2:71393702-71393721 | MS.gene25738:intron | 45.0% | |
| GATGTGGAGAAGGATCATGA+AGG | + | chr3.2:71392187-71392206 | MS.gene25738:CDS | 45.0% | |
| GTGAATGGAAAATCACCCCA+AGG | - | chr3.2:71392046-71392065 | None:intergenic | 45.0% | |
| TCATGATCCTTCTCCACATC+TGG | - | chr3.2:71392187-71392206 | None:intergenic | 45.0% | |
| TGCATCACATGTGCATTCTG+CGG | - | chr3.2:71391774-71391793 | None:intergenic | 45.0% | |
| TGGCGAAGAAGTTCTGTTGA+CGG | - | chr3.2:71392283-71392302 | None:intergenic | 45.0% | |
| TTGGGACCATGTGTTTGGTT+TGG | + | chr3.2:71393048-71393067 | MS.gene25738:intron | 45.0% | |
| ! | AGGAAGCACGTGAATGAAAC+CGG | - | chr3.2:71391981-71392000 | None:intergenic | 45.0% |
| ! | CTACCACTCTTTTGCATCCT+TGG | - | chr3.2:71394120-71394139 | None:intergenic | 45.0% |
| ! | TGCAGCTACCAATGGTCTTA+TGG | - | chr3.2:71392739-71392758 | None:intergenic | 45.0% |
| ! | TGGGGTGATTTTCCATTCAC+TGG | + | chr3.2:71392046-71392065 | MS.gene25738:CDS | 45.0% |
| ! | TTCTTTGAAGGCATGGGACT+TGG | + | chr3.2:71392774-71392793 | MS.gene25738:CDS | 45.0% |
| !!! | CCGGTGCCCTTTTAGAATAA+TGG | - | chr3.2:71392141-71392160 | None:intergenic | 45.0% |
| AACACATGGTCCCAAGCACA+TGG | - | chr3.2:71393043-71393062 | None:intergenic | 50.0% | |
| ACACATGGTCCCAAGCACAT+GGG | - | chr3.2:71393042-71393061 | None:intergenic | 50.0% | |
| ACCGGTTGCCAAAATCACAC+CGG | - | chr3.2:71391963-71391982 | None:intergenic | 50.0% | |
| CAAAATCACACCGGCAGCAA+AGG | - | chr3.2:71391954-71391973 | None:intergenic | 50.0% | |
| GAAGGATCATGAAGGACACG+TGG | + | chr3.2:71392195-71392214 | MS.gene25738:CDS | 50.0% | |
| GAGTGAGGTAACACCAGATG+TGG | + | chr3.2:71392171-71392190 | MS.gene25738:CDS | 50.0% | |
| GGTAACACCAGATGTGGAGA+AGG | + | chr3.2:71392177-71392196 | MS.gene25738:CDS | 50.0% | |
| GTTCATGAGCCCATGTGCTT+GGG | + | chr3.2:71393030-71393049 | MS.gene25738:intron | 50.0% | |
| TCGCCATAGGGTCATAACAC+AGG | + | chr3.2:71392297-71392316 | MS.gene25738:CDS | 50.0% | |
| TGTGCTTGGGACCATGTGTT+TGG | + | chr3.2:71393043-71393062 | MS.gene25738:intron | 50.0% | |
| TGTTCATGAGCCCATGTGCT+TGG | + | chr3.2:71393029-71393048 | MS.gene25738:intron | 50.0% | |
| ! | CTTTGCTGCCGGTGTGATTT+TGG | + | chr3.2:71391952-71391971 | MS.gene25738:CDS | 50.0% |
| ! | TCTTTTTCCGGGCTTAACGC+CGG | - | chr3.2:71391911-71391930 | None:intergenic | 50.0% |
| ACCTCACTCTCAACCTGTGC+CGG | - | chr3.2:71392160-71392179 | None:intergenic | 55.0% | |
| AGTGATACCGGCGTTAAGCC+CGG | + | chr3.2:71391901-71391920 | MS.gene25738:CDS | 55.0% | |
| CACCGCTATGGGGACTCTTA+TGG | + | chr3.2:71392084-71392103 | MS.gene25738:CDS | 55.0% | |
| GTGGCTATGTGCACCGCTAT+GGG | + | chr3.2:71392073-71392092 | MS.gene25738:CDS | 55.0% | |
| TGGCTATGTGCACCGCTATG+GGG | + | chr3.2:71392074-71392093 | MS.gene25738:CDS | 55.0% | |
| TGTGGCTATGTGCACCGCTA+TGG | + | chr3.2:71392072-71392091 | MS.gene25738:CDS | 55.0% | |
| !! | GCCGGTGTGATTTTGGCAAC+CGG | + | chr3.2:71391959-71391978 | MS.gene25738:CDS | 55.0% |
| !! | TTCTAAAAGGGCACCGGCAC+AGG | + | chr3.2:71392144-71392163 | MS.gene25738:CDS | 55.0% |
| ! | ACCGGCACAGGTTGAGAGTG+AGG | + | chr3.2:71392156-71392175 | MS.gene25738:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 71391698 | 71394212 | 71391698 | ID=MS.gene25738 |
| chr3.2 | mRNA | 71391698 | 71394212 | 71391698 | ID=MS.gene25738.t1;Parent=MS.gene25738 |
| chr3.2 | exon | 71391698 | 71392318 | 71391698 | ID=MS.gene25738.t1.exon1;Parent=MS.gene25738.t1 |
| chr3.2 | CDS | 71391698 | 71392318 | 71391698 | ID=cds.MS.gene25738.t1;Parent=MS.gene25738.t1 |
| chr3.2 | exon | 71392663 | 71392812 | 71392663 | ID=MS.gene25738.t1.exon2;Parent=MS.gene25738.t1 |
| chr3.2 | CDS | 71392663 | 71392812 | 71392663 | ID=cds.MS.gene25738.t1;Parent=MS.gene25738.t1 |
| chr3.2 | exon | 71393907 | 71394212 | 71393907 | ID=MS.gene25738.t1.exon3;Parent=MS.gene25738.t1 |
| chr3.2 | CDS | 71393907 | 71394212 | 71393907 | ID=cds.MS.gene25738.t1;Parent=MS.gene25738.t1 |
| Gene Sequence |
| Protein sequence |
