Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26625.t1 | XP_003607985.1 | 96.6 | 552 | 17 | 2 | 81 | 632 | 78 | 627 | 0.00E+00 | 1086.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26625.t1 | P40781 | 75.2 | 499 | 106 | 6 | 150 | 632 | 1 | 497 | 1.6e-218 | 760.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26625.t1 | G7JL95 | 96.6 | 552 | 17 | 2 | 81 | 632 | 78 | 627 | 0.0e+00 | 1086.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049368 | MS.gene26625 | 0.810434 | 1.16E-50 | -1.69E-46 |
| MS.gene050646 | MS.gene26625 | 0.802568 | 5.28E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene26625 | 0.813889 | 2.04E-51 | -1.69E-46 |
| MS.gene052307 | MS.gene26625 | 0.810352 | 1.20E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene26625 | 0.839282 | 1.74E-57 | -1.69E-46 |
| MS.gene053143 | MS.gene26625 | 0.819466 | 1.14E-52 | -1.69E-46 |
| MS.gene057174 | MS.gene26625 | 0.800743 | 1.25E-48 | -1.69E-46 |
| MS.gene058149 | MS.gene26625 | 0.826704 | 2.34E-54 | -1.69E-46 |
| MS.gene058292 | MS.gene26625 | 0.808415 | 3.13E-50 | -1.69E-46 |
| MS.gene060342 | MS.gene26625 | -0.812346 | 4.44E-51 | -1.69E-46 |
| MS.gene060343 | MS.gene26625 | -0.822284 | 2.57E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene26625 | 0.81639 | 5.67E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene26625 | 0.802264 | 6.09E-49 | -1.69E-46 |
| MS.gene061100 | MS.gene26625 | 0.813433 | 2.57E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26625.t1 | MTR_4g086240 | 97.152 | 632 | 13 | 4 | 1 | 632 | 1 | 627 | 0.0 | 1265 |
| MS.gene26625.t1 | MTR_3g101680 | 63.287 | 651 | 204 | 9 | 1 | 630 | 1 | 637 | 0.0 | 819 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26625.t1 | AT3G19240 | 69.394 | 660 | 159 | 9 | 1 | 630 | 1 | 647 | 0.0 | 884 |
| MS.gene26625.t1 | AT4G33400 | 65.719 | 598 | 187 | 7 | 42 | 630 | 57 | 645 | 0.0 | 806 |
Find 171 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCAATGATGCTGGCTTTC+AGG | 0.112027 | 4.1:+23539621 | MS.gene26625:CDS |
| ATTTCGTCTCCAACGGTGTC+TGG | 0.228016 | 4.1:+23539287 | MS.gene26625:CDS |
| GCAACACTCCCAACGCTAAA+TGG | 0.243481 | 4.1:+23539086 | MS.gene26625:CDS |
| GAGAATAAGGTTAAGGTTTA+CGG | 0.259733 | 4.1:+23539406 | MS.gene26625:CDS |
| GGGTACAACTGATACTTATT+TGG | 0.269243 | 4.1:+23540239 | MS.gene26625:CDS |
| GAAATTCAGTGACGAATTTC+CGG | 0.280068 | 4.1:-23539339 | None:intergenic |
| TGCACGTTTGAGAATGTTTA+CGG | 0.298124 | 4.1:+23539367 | MS.gene26625:CDS |
| CACTCCTCTGGATTCACATT+TGG | 0.308842 | 4.1:+23540362 | MS.gene26625:CDS |
| GAATTCCCCGGTCAAAATTC+CGG | 0.312404 | 4.1:-23539648 | None:intergenic |
| GCTACCACCAACGGAGCTTC+AGG | 0.325629 | 4.1:-23541854 | None:intergenic |
| ATGGCCACCATGAAACTTAT+TGG | 0.332207 | 4.1:-23540394 | None:intergenic |
| CCGGCAGGAGACGCCGAATA+AGG | 0.333099 | 4.1:+23539708 | MS.gene26625:CDS |
| TATCAAGAGCACCTAGGGTT+AGG | 0.337247 | 4.1:-23539588 | None:intergenic |
| ATGCTGGCTTTCAGGTTTAC+CGG | 0.345587 | 4.1:+23539629 | MS.gene26625:CDS |
| ATAAGGCTCCGGACTCTTCC+CGG | 0.347959 | 4.1:-23539506 | None:intergenic |
| ACGGAATCATCCGCGGCTTC+CGG | 0.354674 | 4.1:-23539454 | None:intergenic |
| GAACTTCAATTAAAGATGTT+TGG | 0.356166 | 4.1:+23539247 | MS.gene26625:CDS |
| ATCACCGACGGAAGAGAATA+AGG | 0.356376 | 4.1:+23539393 | MS.gene26625:CDS |
| GGAAGAGTCCGGAGCCTTAT+CGG | 0.358877 | 4.1:+23539509 | MS.gene26625:CDS |
| GGGAAGACAAAGACTGGTTT+TGG | 0.360962 | 4.1:+23540294 | MS.gene26625:CDS |
| AACCAGCTTGATATAGAAAC+AGG | 0.367263 | 4.1:+23539808 | MS.gene26625:CDS |
| CTCATCAACAAAGCCTTATT+CGG | 0.367438 | 4.1:-23539721 | None:intergenic |
| ATTGTGGTGGGGTCTCTTGA+TGG | 0.370162 | 4.1:+23540105 | MS.gene26625:CDS |
| ACAGTGCTCACGAATGTTAC+AGG | 0.375660 | 4.1:+23541726 | MS.gene26625:CDS |
| CTGATAGAGCTAACTTTCAT+AGG | 0.376837 | 4.1:-23541881 | None:intergenic |
| TGGGCAAGTTCAGTGTGATA+TGG | 0.385495 | 4.1:+23541684 | MS.gene26625:CDS |
| AATATAAACGGAGGTTTAAC+GGG | 0.388303 | 4.1:-23541921 | None:intergenic |
| TTGGTGGTCGTATGGGAAAC+AGG | 0.400307 | 4.1:+23540313 | MS.gene26625:CDS |
| ATTGTTGAAGCTCACTCCTC+TGG | 0.400548 | 4.1:+23540350 | MS.gene26625:CDS |
| GAGTGGAAGTTTGAGAAAGA+TGG | 0.406716 | 4.1:+23539844 | MS.gene26625:CDS |
| GGCGTAGGAGGTTCGTTTGT+CGG | 0.407065 | 4.1:-23539116 | None:intergenic |
| GTTAGCTCTATCAGTATGTC+TGG | 0.407557 | 4.1:+23541890 | MS.gene26625:CDS |
| CTCTTGAAAATTGATGCCCT+TGG | 0.407659 | 4.1:-23540041 | None:intergenic |
| GTTTACGGTAAGGAGTTTAT+CGG | 0.411185 | 4.1:+23539421 | MS.gene26625:CDS |
| GTCTTTCAGGTCACTGAGAA+TGG | 0.411232 | 4.1:+23541632 | MS.gene26625:intron |
| ATCAAGAGCACCTAGGGTTA+GGG | 0.431483 | 4.1:-23539587 | None:intergenic |
| TCGGTCTAGAGGTGATTTGA+TGG | 0.434873 | 4.1:+23539528 | MS.gene26625:CDS |
| TTTCAATGCTTTGCGACTAC+AGG | 0.435993 | 4.1:+23540072 | MS.gene26625:CDS |
| GTAACATCAACGCTTGTAAT+CGG | 0.436282 | 4.1:-23540195 | None:intergenic |
| GATTGATTACCCATGAGAAA+TGG | 0.436454 | 4.1:-23540413 | None:intergenic |
| AAACATCTTTAATTGAAGTT+CGG | 0.437252 | 4.1:-23539245 | None:intergenic |
| CGGTAAGGAGTTTATCGGTT+GGG | 0.438836 | 4.1:+23539426 | MS.gene26625:CDS |
| TGATACTAAAGGGTCACAAT+TGG | 0.441061 | 4.1:+23539897 | MS.gene26625:CDS |
| AAGCCGCGGATGATTCCGTT+TGG | 0.443303 | 4.1:+23539458 | MS.gene26625:CDS |
| ATGTGGCGCTCCACTATTCA+AGG | 0.446889 | 4.1:-23539773 | None:intergenic |
| CGAGGTTGGTGGAATGTGAT+TGG | 0.450494 | 4.1:-23538937 | None:intergenic |
| GAGAGAATCCATTTAGCGTT+GGG | 0.450845 | 4.1:-23539094 | None:intergenic |
| GTCGTAATCTGAGTCGGAAT+CGG | 0.451640 | 4.1:-23538852 | None:intergenic |
| CCTCTGGATTCACATTTGGC+TGG | 0.454255 | 4.1:+23540366 | MS.gene26625:CDS |
| AGGGTCACAATTGGATCCTT+CGG | 0.457090 | 4.1:+23539906 | MS.gene26625:CDS |
| AGCCGCGGATGATTCCGTTT+GGG | 0.459582 | 4.1:+23539459 | MS.gene26625:CDS |
| TTTCGTCTCCAACGGTGTCT+GGG | 0.461909 | 4.1:+23539288 | MS.gene26625:CDS |
| GGAAAATTCACGGCCTTCGC+GGG | 0.464185 | 4.1:-23538831 | None:intergenic |
| GGAACTACCAATAAGTTTCA+TGG | 0.465212 | 4.1:+23540387 | MS.gene26625:CDS |
| TTCATGGTGGCCATTTCTCA+TGG | 0.466170 | 4.1:+23540403 | MS.gene26625:CDS |
| ATCGATGAGGATGGCGAAGA+CGG | 0.468077 | 4.1:+23540152 | MS.gene26625:CDS |
| TGATGGCTCCGGGAAGAGTC+CGG | 0.468191 | 4.1:+23539498 | MS.gene26625:CDS |
| AATATGAAGGTGGGAATCTC+CGG | 0.468508 | 4.1:+23539689 | MS.gene26625:CDS |
| GACGGAAGAGAATAAGGTTA+AGG | 0.470623 | 4.1:+23539399 | MS.gene26625:CDS |
| GCTGTTTCCGATGATGGCTC+CGG | 0.471673 | 4.1:+23539487 | MS.gene26625:CDS |
| CATCTTTAATTGAAGTTCGG+TGG | 0.474570 | 4.1:-23539242 | None:intergenic |
| ATGATAACAGGCTCTGTCAA+TGG | 0.476193 | 4.1:+23539950 | MS.gene26625:CDS |
| CGGAAAATTCACGGCCTTCG+CGG | 0.476321 | 4.1:-23538832 | None:intergenic |
| TTGTGGTGGGGTCTCTTGAT+GGG | 0.477747 | 4.1:+23540106 | MS.gene26625:CDS |
| TAAGGTTAAGGTTTACGGTA+AGG | 0.479211 | 4.1:+23539411 | MS.gene26625:CDS |
| TTTGATGGAAAGTGGGTGTT+GGG | 0.481016 | 4.1:+23540219 | MS.gene26625:CDS |
| CTGTTACAAGATAGTATTGA+AGG | 0.484212 | 4.1:+23541775 | MS.gene26625:CDS |
| GAAGATGCTGTTTCCGATGA+TGG | 0.484247 | 4.1:+23539481 | MS.gene26625:CDS |
| TCCCTGTTTCTATATCAAGC+TGG | 0.490609 | 4.1:-23539810 | None:intergenic |
| CTAGTTCGCCGGTGTTGCAT+TGG | 0.491553 | 4.1:+23540016 | MS.gene26625:CDS |
| CTCCCCTGAAGCTCCGTTGG+TGG | 0.492757 | 4.1:+23541850 | MS.gene26625:CDS |
| GATATCACAAATGATACTAA+AGG | 0.496137 | 4.1:+23539886 | MS.gene26625:CDS |
| CGACTCCCCTGAAGCTCCGT+TGG | 0.497070 | 4.1:+23541847 | MS.gene26625:CDS |
| ACGATGTTGCTCAAGGTCAA+TGG | 0.498510 | 4.1:+23539182 | MS.gene26625:CDS |
| AGTGGAAGTTTGAGAAAGAT+GGG | 0.500651 | 4.1:+23539845 | MS.gene26625:CDS |
| ATATCACAAATGATACTAAA+GGG | 0.501069 | 4.1:+23539887 | MS.gene26625:CDS |
| GTTTATCGGTTGGGTGAAGC+CGG | 0.501437 | 4.1:+23539435 | MS.gene26625:CDS |
| TGATAACAGGCTCTGTCAAT+GGG | 0.502495 | 4.1:+23539951 | MS.gene26625:CDS |
| CCTTATTCGGCGTCTCCTGC+CGG | 0.502524 | 4.1:-23539708 | None:intergenic |
| ACATTGTTTACTGATAAAGA+TGG | 0.508772 | 4.1:+23540273 | MS.gene26625:CDS |
| TGGGATATGCGTGATAGAAA+AGG | 0.509675 | 4.1:+23539970 | MS.gene26625:CDS |
| CGAATAAGGCTTTGTTGATG+AGG | 0.523505 | 4.1:+23539722 | MS.gene26625:CDS |
| GGGCAAGTTCAGTGTGATAT+GGG | 0.523866 | 4.1:+23541685 | MS.gene26625:CDS |
| CTACCACCAACGGAGCTTCA+GGG | 0.527377 | 4.1:-23541853 | None:intergenic |
| CTGATGAGTCCCTTGAATAG+TGG | 0.528395 | 4.1:+23539763 | MS.gene26625:CDS |
| GGAGAGAATCCATTTAGCGT+TGG | 0.530109 | 4.1:-23539095 | None:intergenic |
| ATGGGGCTGATATTACTATG+AGG | 0.530532 | 4.1:+23539863 | MS.gene26625:CDS |
| GGAGTGAGCTTCAACAATCT+AGG | 0.532631 | 4.1:-23540345 | None:intergenic |
| AAATCACCTCTAGACCGATA+AGG | 0.534172 | 4.1:-23539523 | None:intergenic |
| ACGGTAAGGAGTTTATCGGT+TGG | 0.534675 | 4.1:+23539425 | MS.gene26625:CDS |
| GAATTTCCGGTAGGATTCAT+CGG | 0.534793 | 4.1:-23539326 | None:intergenic |
| TTTGACCGGGGAATTCGAAA+GGG | 0.535186 | 4.1:+23539655 | MS.gene26625:CDS |
| GTCGACATCATCGAGGTTGG+TGG | 0.536613 | 4.1:-23538948 | None:intergenic |
| CTGTTTCCGATGATGGCTCC+GGG | 0.537725 | 4.1:+23539488 | MS.gene26625:CDS |
| TTCCGGTAGGATTCATCGGT+GGG | 0.539088 | 4.1:-23539322 | None:intergenic |
| AAAGATGGGAAGACAAAGAC+TGG | 0.541574 | 4.1:+23540288 | MS.gene26625:CDS |
| GAGTTTGAAGAGGCTGCAAA+TGG | 0.542974 | 4.1:+23539553 | MS.gene26625:CDS |
| GAGGTTGGTGGAATGTGATT+GGG | 0.544190 | 4.1:-23538936 | None:intergenic |
| GTAATCGGAGAACCAAGCCC+TGG | 0.550925 | 4.1:-23540180 | None:intergenic |
| CCGGTGTTGCATTGGAACCA+AGG | 0.557776 | 4.1:+23540024 | MS.gene26625:CDS |
| CGTGTTGATTTCGTCTCCAA+CGG | 0.558067 | 4.1:+23539280 | MS.gene26625:CDS |
| CGCCACCTTGTTGCAACTGT+GGG | 0.559509 | 4.1:+23541665 | MS.gene26625:CDS |
| GGGGTAGCTGTGAAATATGA+AGG | 0.559703 | 4.1:+23539676 | MS.gene26625:CDS |
| AGGAGATGGTTCAATTGTGG+TGG | 0.559861 | 4.1:+23540092 | MS.gene26625:CDS |
| ACTCTTCCCGGAGCCATCAT+CGG | 0.560365 | 4.1:-23539494 | None:intergenic |
| CATTGTTTACTGATAAAGAT+GGG | 0.561253 | 4.1:+23540274 | MS.gene26625:CDS |
| GGAGATGGTTCAATTGTGGT+GGG | 0.561276 | 4.1:+23540093 | MS.gene26625:CDS |
| ACTGTTATCAAGAGCACCTA+GGG | 0.561865 | 4.1:-23539593 | None:intergenic |
| AGTCGGAATCGGAAAATTCA+CGG | 0.562438 | 4.1:-23538841 | None:intergenic |
| TCATGGTGGCCATTTCTCAT+GGG | 0.562447 | 4.1:+23540404 | MS.gene26625:CDS |
| TGCTTTGCGACTACAGGAGA+TGG | 0.564028 | 4.1:+23540078 | MS.gene26625:CDS |
| GGTCGTATGGGAAACAGGAT+AGG | 0.565383 | 4.1:+23540318 | MS.gene26625:CDS |
| TTGGGTGAAGCCGGAAGCCG+CGG | 0.568941 | 4.1:+23539444 | MS.gene26625:CDS |
| CCTTGGTTCCAATGCAACAC+CGG | 0.569871 | 4.1:-23540024 | None:intergenic |
| AGCGTCGACATCATCGAGGT+TGG | 0.570308 | 4.1:-23538951 | None:intergenic |
| GGTCTCTTGATGGGAAGATA+AGG | 0.572601 | 4.1:+23540115 | MS.gene26625:CDS |
| CGGTGTTGCATTGGAACCAA+GGG | 0.572776 | 4.1:+23540025 | MS.gene26625:CDS |
| CCTCTAGACCGATAAGGCTC+CGG | 0.574522 | 4.1:-23539517 | None:intergenic |
| ATAGGAGTTGCTACCACCAA+CGG | 0.574538 | 4.1:-23541863 | None:intergenic |
| TTCCCACCGATGAATCCTAC+CGG | 0.575350 | 4.1:+23539320 | MS.gene26625:CDS |
| TTTAAGAGCCCAGACACCGT+TGG | 0.580496 | 4.1:-23539296 | None:intergenic |
| TAGCTGTGAAATATGAAGGT+GGG | 0.583398 | 4.1:+23539680 | MS.gene26625:CDS |
| ACGCCACCTTGTTGCAACTG+TGG | 0.586989 | 4.1:+23541664 | MS.gene26625:CDS |
| GGAAACAGCATCTTCCCAAA+CGG | 0.591198 | 4.1:-23539473 | None:intergenic |
| GGTATTCAAACCCTAACCCT+AGG | 0.591767 | 4.1:+23539577 | MS.gene26625:CDS |
| GAATAAGGCTTTGTTGATGA+GGG | 0.593377 | 4.1:+23539723 | MS.gene26625:CDS |
| GAATGTTACAGGAATCAACT+AGG | 0.594574 | 4.1:+23541737 | MS.gene26625:CDS |
| TACCACCAACGGAGCTTCAG+GGG | 0.595085 | 4.1:-23541852 | None:intergenic |
| TTGTTCGTCGTAATCTGAGT+CGG | 0.595936 | 4.1:-23538858 | None:intergenic |
| TGGGGCTGATATTACTATGA+GGG | 0.598346 | 4.1:+23539864 | MS.gene26625:CDS |
| TGAAGGTGGGAATCTCCGGC+AGG | 0.605060 | 4.1:+23539693 | MS.gene26625:CDS |
| TACAGGAGATGGTTCAATTG+TGG | 0.608660 | 4.1:+23540089 | MS.gene26625:CDS |
| GCTCTATCAGTATGTCTGGA+AGG | 0.609197 | 4.1:+23541894 | MS.gene26625:CDS |
| TTAACCTTATTCTCTTCCGT+CGG | 0.609586 | 4.1:-23539397 | None:intergenic |
| TTGACCGGGGAATTCGAAAG+GGG | 0.609777 | 4.1:+23539656 | MS.gene26625:CDS |
| CACAACAACGATGTTGCTCA+AGG | 0.611006 | 4.1:+23539175 | MS.gene26625:CDS |
| TATAGCTACAGCTAGTTCGC+CGG | 0.611370 | 4.1:+23540005 | MS.gene26625:CDS |
| TTTGAAGAGGCTGCAAATGG+TGG | 0.611463 | 4.1:+23539556 | MS.gene26625:CDS |
| CCGGAGCCTTATCGGTCTAG+AGG | 0.612763 | 4.1:+23539517 | MS.gene26625:CDS |
| TGGTTCAGCTTCGAAGCATG+TGG | 0.615986 | 4.1:-23539790 | None:intergenic |
| GGGATGAAGATTGAACGTCT+TGG | 0.616486 | 4.1:-23538916 | None:intergenic |
| TTTCCGGTAGGATTCATCGG+TGG | 0.620316 | 4.1:-23539323 | None:intergenic |
| CAGGGAAGATTGTTTCAGAG+TGG | 0.620928 | 4.1:+23539827 | MS.gene26625:CDS |
| TTCGAATAAATCGATGAGGA+TGG | 0.623115 | 4.1:+23540143 | MS.gene26625:CDS |
| GAGTGTTGCCGCCGATGTGA+AGG | 0.626265 | 4.1:-23539072 | None:intergenic |
| AAGCTTTACCTTCACATCGG+CGG | 0.627540 | 4.1:+23539064 | MS.gene26625:CDS |
| GGTCAATGGATTCTCAAAGT+CGG | 0.637822 | 4.1:+23539196 | MS.gene26625:CDS |
| AACTGTTATCAAGAGCACCT+AGG | 0.637908 | 4.1:-23539594 | None:intergenic |
| TTTGATGGAGGAGTTTGAAG+AGG | 0.645411 | 4.1:+23539543 | MS.gene26625:CDS |
| TGTGGCGCTCCACTATTCAA+GGG | 0.647458 | 4.1:-23539772 | None:intergenic |
| TTCAGTGACGAATTTCCGGT+AGG | 0.648527 | 4.1:-23539335 | None:intergenic |
| GTAGCTGTGAAATATGAAGG+TGG | 0.649176 | 4.1:+23539679 | MS.gene26625:CDS |
| AATGTTACAGGAATCAACTA+GGG | 0.649524 | 4.1:+23541738 | MS.gene26625:CDS |
| ACGAGTCAATCATAGAATCA+CGG | 0.650778 | 4.1:+23541798 | MS.gene26625:CDS |
| ACTTGCCCACAGTTGCAACA+AGG | 0.657504 | 4.1:-23541670 | None:intergenic |
| GTCTAGAGGTGATTTGATGG+AGG | 0.661438 | 4.1:+23539531 | MS.gene26625:CDS |
| TTCCCAAACGGAATCATCCG+CGG | 0.661974 | 4.1:-23539461 | None:intergenic |
| GGTACTTCTCAATCCCGCGA+AGG | 0.669085 | 4.1:+23538818 | MS.gene26625:CDS |
| TGTTTACGGTTTATCACCGA+CGG | 0.671523 | 4.1:+23539381 | MS.gene26625:CDS |
| ACCAGCTTGATATAGAAACA+GGG | 0.678641 | 4.1:+23539809 | MS.gene26625:CDS |
| TGACCGGGGAATTCGAAAGG+GGG | 0.680507 | 4.1:+23539657 | MS.gene26625:CDS |
| GTCAAGCTTTACCTTCACAT+CGG | 0.680830 | 4.1:+23539061 | MS.gene26625:CDS |
| TGTATTCGAATAAATCGATG+AGG | 0.688375 | 4.1:+23540139 | MS.gene26625:CDS |
| GTGGAAGTTTGAGAAAGATG+GGG | 0.691794 | 4.1:+23539846 | MS.gene26625:CDS |
| CCAGCCAAATGTGAATCCAG+AGG | 0.694133 | 4.1:-23540366 | None:intergenic |
| GAGATGGTTCAATTGTGGTG+GGG | 0.703282 | 4.1:+23540094 | MS.gene26625:CDS |
| TGCCCACAGTTGCAACAAGG+TGG | 0.704608 | 4.1:-23541667 | None:intergenic |
| CGTTGGAGACGAAATCAACA+CGG | 0.722626 | 4.1:-23539279 | None:intergenic |
| GTTCGGTGGAAACCCTAGCG+CGG | 0.733834 | 4.1:-23539228 | None:intergenic |
| ACTACCAATAAGTTTCATGG+TGG | 0.735152 | 4.1:+23540390 | MS.gene26625:CDS |
| GTTTAGCGTCGACATCATCG+AGG | 0.758315 | 4.1:-23538955 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATATGAATATGAAT+GGG | + | chr4.1:23540515-23540534 | MS.gene26625:intron | 10.0% |
| !! | CATATAAATATGAATATGAA+TGG | + | chr4.1:23540514-23540533 | MS.gene26625:intron | 15.0% |
| !! | CTATTTAAAAAAATCGTAAA+AGG | + | chr4.1:23541197-23541216 | MS.gene26625:intron | 15.0% |
| !! | AAACATCTTTAATTGAAGTT+CGG | - | chr4.1:23539248-23539267 | None:intergenic | 20.0% |
| !! | AATTTCACTTAATGAATTGA+TGG | - | chr4.1:23541305-23541324 | None:intergenic | 20.0% |
| !! | ATATCACAAATGATACTAAA+GGG | + | chr4.1:23539887-23539906 | MS.gene26625:CDS | 20.0% |
| !! | ATTAAATAGCATAAGTAATG+AGG | + | chr4.1:23541173-23541192 | MS.gene26625:intron | 20.0% |
| !! | GATAATGTAATCCATAAATT+TGG | + | chr4.1:23541327-23541346 | MS.gene26625:intron | 20.0% |
| !! | TTAAATAGCATAAGTAATGA+GGG | + | chr4.1:23541174-23541193 | MS.gene26625:intron | 20.0% |
| !!! | ATTAATTCTCTTGCTATTAT+AGG | + | chr4.1:23540881-23540900 | MS.gene26625:intron | 20.0% |
| ! | AATGATATCAGCCAAATTTA+TGG | - | chr4.1:23541341-23541360 | None:intergenic | 25.0% |
| ! | ACATTGTTTACTGATAAAGA+TGG | + | chr4.1:23540273-23540292 | MS.gene26625:CDS | 25.0% |
| ! | ACCACTTAAAATTTCATTCT+AGG | + | chr4.1:23540838-23540857 | MS.gene26625:intron | 25.0% |
| ! | ATGGAATAAACAAGCTTAAA+AGG | - | chr4.1:23541506-23541525 | None:intergenic | 25.0% |
| ! | CATTGTTTACTGATAAAGAT+GGG | + | chr4.1:23540274-23540293 | MS.gene26625:CDS | 25.0% |
| ! | GAACTTCAATTAAAGATGTT+TGG | + | chr4.1:23539247-23539266 | MS.gene26625:CDS | 25.0% |
| ! | GATATCACAAATGATACTAA+AGG | + | chr4.1:23539886-23539905 | MS.gene26625:CDS | 25.0% |
| ! | TCAAAAACATTGTCAAAAAG+CGG | - | chr4.1:23540693-23540712 | None:intergenic | 25.0% |
| ! | TGAATTAAATAGCATATCAC+AGG | + | chr4.1:23540710-23540729 | MS.gene26625:intron | 25.0% |
| ! | TGATCAGTGAGTTATAAATA+TGG | + | chr4.1:23541476-23541495 | MS.gene26625:intron | 25.0% |
| ! | TTTGACATTAATACCATCAA+TGG | + | chr4.1:23540813-23540832 | MS.gene26625:intron | 25.0% |
| !! | ACCTAGAATGAAATTTTAAG+TGG | - | chr4.1:23540842-23540861 | None:intergenic | 25.0% |
| !! | ACTTTCTGTTACTTATGTTT+GGG | + | chr4.1:23541011-23541030 | MS.gene26625:intron | 25.0% |
| !! | GGAATGTTAATTTAAAGTGA+TGG | + | chr4.1:23541543-23541562 | MS.gene26625:intron | 25.0% |
| !! | TCTAGGTTTTCTTTTGTAAA+GGG | + | chr4.1:23540855-23540874 | MS.gene26625:intron | 25.0% |
| !! | TTCTAGGTTTTCTTTTGTAA+AGG | + | chr4.1:23540854-23540873 | MS.gene26625:intron | 25.0% |
| !!! | AAATTGTTATTTGTTCACAG+TGG | + | chr4.1:23541410-23541429 | MS.gene26625:intron | 25.0% |
| !!! | AGAAGAGTATTTGAGTTTTA+AGG | - | chr4.1:23538987-23539006 | None:intergenic | 25.0% |
| !!! | TCATTTGTTTTTTGTCTTTC+AGG | + | chr4.1:23541619-23541638 | MS.gene26625:intron | 25.0% |
| AAAGGATGAAAAGCAAGTAT+AGG | + | chr4.1:23541215-23541234 | MS.gene26625:intron | 30.0% | |
| AATGCTGCAAGATGTATAAA+TGG | + | chr4.1:23541126-23541145 | MS.gene26625:intron | 30.0% | |
| AATGTTACAGGAATCAACTA+GGG | + | chr4.1:23541738-23541757 | MS.gene26625:CDS | 30.0% | |
| ACATGACAATGCAAAATAGA+AGG | - | chr4.1:23540468-23540487 | None:intergenic | 30.0% | |
| CAATCAGTATTGTTAAACAG+CGG | - | chr4.1:23540771-23540790 | None:intergenic | 30.0% | |
| GAGAATAAGGTTAAGGTTTA+CGG | + | chr4.1:23539406-23539425 | MS.gene26625:CDS | 30.0% | |
| TGTATTCGAATAAATCGATG+AGG | + | chr4.1:23540139-23540158 | MS.gene26625:CDS | 30.0% | |
| ! | AAATGATTAATACTTGCTGC+GGG | - | chr4.1:23541605-23541624 | None:intergenic | 30.0% |
| ! | CAAATGATTAATACTTGCTG+CGG | - | chr4.1:23541606-23541625 | None:intergenic | 30.0% |
| ! | CACTTTCTGTTACTTATGTT+TGG | + | chr4.1:23541010-23541029 | MS.gene26625:intron | 30.0% |
| ! | CTAGGTTTTCTTTTGTAAAG+GGG | + | chr4.1:23540856-23540875 | MS.gene26625:intron | 30.0% |
| ! | CTGTTACAAGATAGTATTGA+AGG | + | chr4.1:23541775-23541794 | MS.gene26625:CDS | 30.0% |
| !! | TTATTTGTTGTTACCATGTG+CGG | + | chr4.1:23540905-23540924 | MS.gene26625:intron | 30.0% |
| !! | TTTTAAGTGGTAACCATTGA+TGG | - | chr4.1:23540829-23540848 | None:intergenic | 30.0% |
| !!! | ATGTTACTTTTGATGGAAAG+TGG | + | chr4.1:23540211-23540230 | MS.gene26625:CDS | 30.0% |
| !!! | TGTTACTTTTGATGGAAAGT+GGG | + | chr4.1:23540212-23540231 | MS.gene26625:CDS | 30.0% |
| AACCAGCTTGATATAGAAAC+AGG | + | chr4.1:23539808-23539827 | MS.gene26625:CDS | 35.0% | |
| AACGTCTTGTACTCTACTAA+TGG | - | chr4.1:23541245-23541264 | None:intergenic | 35.0% | |
| ACCAGCTTGATATAGAAACA+GGG | + | chr4.1:23539809-23539828 | MS.gene26625:CDS | 35.0% | |
| ACGAGTCAATCATAGAATCA+CGG | + | chr4.1:23541798-23541817 | MS.gene26625:CDS | 35.0% | |
| ACGCTTTCTGTTTAAAAGCT+AGG | + | chr4.1:23541038-23541057 | MS.gene26625:intron | 35.0% | |
| ACTACCAATAAGTTTCATGG+TGG | + | chr4.1:23540390-23540409 | MS.gene26625:CDS | 35.0% | |
| AGTGGAAGTTTGAGAAAGAT+GGG | + | chr4.1:23539845-23539864 | MS.gene26625:CDS | 35.0% | |
| CACACAATGTTGTCAATTGT+CGG | + | chr4.1:23540613-23540632 | MS.gene26625:intron | 35.0% | |
| CATCTTTAATTGAAGTTCGG+TGG | - | chr4.1:23539245-23539264 | None:intergenic | 35.0% | |
| CTGATAGAGCTAACTTTCAT+AGG | - | chr4.1:23541884-23541903 | None:intergenic | 35.0% | |
| GAAATTCAGTGACGAATTTC+CGG | - | chr4.1:23539342-23539361 | None:intergenic | 35.0% | |
| GAATGTTACAGGAATCAACT+AGG | + | chr4.1:23541737-23541756 | MS.gene26625:CDS | 35.0% | |
| GATTGATTACCCATGAGAAA+TGG | - | chr4.1:23540416-23540435 | None:intergenic | 35.0% | |
| GGAACTACCAATAAGTTTCA+TGG | + | chr4.1:23540387-23540406 | MS.gene26625:CDS | 35.0% | |
| GGGTACAACTGATACTTATT+TGG | + | chr4.1:23540239-23540258 | MS.gene26625:CDS | 35.0% | |
| GGTATAGAACTATTGCATAG+CGG | - | chr4.1:23540660-23540679 | None:intergenic | 35.0% | |
| GTAACATCAACGCTTGTAAT+CGG | - | chr4.1:23540198-23540217 | None:intergenic | 35.0% | |
| GTTTACGGTAAGGAGTTTAT+CGG | + | chr4.1:23539421-23539440 | MS.gene26625:CDS | 35.0% | |
| TAAGGTTAAGGTTTACGGTA+AGG | + | chr4.1:23539411-23539430 | MS.gene26625:CDS | 35.0% | |
| TAGCATATCACAGGAAATAG+CGG | + | chr4.1:23540719-23540738 | MS.gene26625:intron | 35.0% | |
| TAGCTGTGAAATATGAAGGT+GGG | + | chr4.1:23539680-23539699 | MS.gene26625:CDS | 35.0% | |
| TGATACTAAAGGGTCACAAT+TGG | + | chr4.1:23539897-23539916 | MS.gene26625:CDS | 35.0% | |
| TGATCCATATAATAGTGCGA+TGG | + | chr4.1:23541080-23541099 | MS.gene26625:intron | 35.0% | |
| TGCACGTTTGAGAATGTTTA+CGG | + | chr4.1:23539367-23539386 | MS.gene26625:CDS | 35.0% | |
| TTAACCTTATTCTCTTCCGT+CGG | - | chr4.1:23539400-23539419 | None:intergenic | 35.0% | |
| TTCACCATCGCACTATTATA+TGG | - | chr4.1:23541087-23541106 | None:intergenic | 35.0% | |
| TTCGAATAAATCGATGAGGA+TGG | + | chr4.1:23540143-23540162 | MS.gene26625:CDS | 35.0% | |
| TTGTCAATTGTCGGAAATAG+CGG | + | chr4.1:23540622-23540641 | MS.gene26625:intron | 35.0% | |
| ! | AGTTTTCTTCTCAATGATGC+TGG | + | chr4.1:23539613-23539632 | MS.gene26625:CDS | 35.0% |
| ! | GTCTCTGATTGTGATTTTGA+AGG | - | chr4.1:23539016-23539035 | None:intergenic | 35.0% |
| ! | TAAAGCTTGACAGCGTTTTT+GGG | - | chr4.1:23539052-23539071 | None:intergenic | 35.0% |
| ! | TCACCCATCATTTTCAGAAT+CGG | - | chr4.1:23541152-23541171 | None:intergenic | 35.0% |
| !! | CTCATCAACAAAGCCTTATT+CGG | - | chr4.1:23539724-23539743 | None:intergenic | 35.0% |
| !! | GAATAAGGCTTTGTTGATGA+GGG | + | chr4.1:23539723-23539742 | MS.gene26625:CDS | 35.0% |
| !! | GATTGTGATTTTGAAGGTGA+AGG | - | chr4.1:23539010-23539029 | None:intergenic | 35.0% |
| !! | GCTTTTAAACAGAAAGCGTA+TGG | - | chr4.1:23541037-23541056 | None:intergenic | 35.0% |
| !!! | AAGGGCATCAATTTTCAAGA+GGG | + | chr4.1:23540043-23540062 | MS.gene26625:CDS | 35.0% |
| !!! | AGCGTTGATGTTACTTTTGA+TGG | + | chr4.1:23540204-23540223 | MS.gene26625:CDS | 35.0% |
| !!! | TTTTAGGGTTGGATGATAAC+AGG | + | chr4.1:23539938-23539957 | MS.gene26625:CDS | 35.0% |
| AAAGATGGGAAGACAAAGAC+TGG | + | chr4.1:23540288-23540307 | MS.gene26625:CDS | 40.0% | |
| AAATCACCTCTAGACCGATA+AGG | - | chr4.1:23539526-23539545 | None:intergenic | 40.0% | |
| AATATGAAGGTGGGAATCTC+CGG | + | chr4.1:23539689-23539708 | MS.gene26625:CDS | 40.0% | |
| AGTCGGAATCGGAAAATTCA+CGG | - | chr4.1:23538844-23538863 | None:intergenic | 40.0% | |
| ATGATAACAGGCTCTGTCAA+TGG | + | chr4.1:23539950-23539969 | MS.gene26625:CDS | 40.0% | |
| ATGGCCACCATGAAACTTAT+TGG | - | chr4.1:23540397-23540416 | None:intergenic | 40.0% | |
| ATGGGGCTGATATTACTATG+AGG | + | chr4.1:23539863-23539882 | MS.gene26625:CDS | 40.0% | |
| CAATTGACAACATTGTGTGC+AGG | - | chr4.1:23540612-23540631 | None:intergenic | 40.0% | |
| CTCTTGAAAATTGATGCCCT+TGG | - | chr4.1:23540044-23540063 | None:intergenic | 40.0% | |
| GAATGTGTATGAGTGTGTGT+TGG | - | chr4.1:23540572-23540591 | None:intergenic | 40.0% | |
| GAATTTCCGGTAGGATTCAT+CGG | - | chr4.1:23539329-23539348 | None:intergenic | 40.0% | |
| GACGGAAGAGAATAAGGTTA+AGG | + | chr4.1:23539399-23539418 | MS.gene26625:CDS | 40.0% | |
| GAGAGAATCCATTTAGCGTT+GGG | - | chr4.1:23539097-23539116 | None:intergenic | 40.0% | |
| GAGTGGAAGTTTGAGAAAGA+TGG | + | chr4.1:23539844-23539863 | MS.gene26625:CDS | 40.0% | |
| GTAGCTGTGAAATATGAAGG+TGG | + | chr4.1:23539679-23539698 | MS.gene26625:CDS | 40.0% | |
| GTCAAGCTTTACCTTCACAT+CGG | + | chr4.1:23539061-23539080 | MS.gene26625:CDS | 40.0% | |
| GTGCGATGGTGAAATTATCA+TGG | + | chr4.1:23541094-23541113 | MS.gene26625:intron | 40.0% | |
| GTGGAAGTTTGAGAAAGATG+GGG | + | chr4.1:23539846-23539865 | MS.gene26625:CDS | 40.0% | |
| TACAGGAGATGGTTCAATTG+TGG | + | chr4.1:23540089-23540108 | MS.gene26625:CDS | 40.0% | |
| TCAAAAAGCGGTTATAGCAC+AGG | - | chr4.1:23540681-23540700 | None:intergenic | 40.0% | |
| TGATAACAGGCTCTGTCAAT+GGG | + | chr4.1:23539951-23539970 | MS.gene26625:CDS | 40.0% | |
| TGGGATATGCGTGATAGAAA+AGG | + | chr4.1:23539970-23539989 | MS.gene26625:CDS | 40.0% | |
| TGGGGCTGATATTACTATGA+GGG | + | chr4.1:23539864-23539883 | MS.gene26625:CDS | 40.0% | |
| TGTTTACGGTTTATCACCGA+CGG | + | chr4.1:23539381-23539400 | MS.gene26625:CDS | 40.0% | |
| TTAATAGACGACATGACTGC+AGG | + | chr4.1:23541386-23541405 | MS.gene26625:intron | 40.0% | |
| TTGTTCGTCGTAATCTGAGT+CGG | - | chr4.1:23538861-23538880 | None:intergenic | 40.0% | |
| TTTCAATGCTTTGCGACTAC+AGG | + | chr4.1:23540072-23540091 | MS.gene26625:CDS | 40.0% | |
| TTTGATGGAAAGTGGGTGTT+GGG | + | chr4.1:23540219-23540238 | MS.gene26625:CDS | 40.0% | |
| TTTGATGGAGGAGTTTGAAG+AGG | + | chr4.1:23539543-23539562 | MS.gene26625:CDS | 40.0% | |
| ! | ATGGCCGATTCTGAAAATGA+TGG | + | chr4.1:23541145-23541164 | MS.gene26625:intron | 40.0% |
| ! | GGTCAATGGATTCTCAAAGT+CGG | + | chr4.1:23539196-23539215 | MS.gene26625:CDS | 40.0% |
| ! | GTAAAGCTTGACAGCGTTTT+TGG | - | chr4.1:23539053-23539072 | None:intergenic | 40.0% |
| ! | GTCTGGTTTAGCAATAGTGT+GGG | + | chr4.1:23540967-23540986 | MS.gene26625:intron | 40.0% |
| ! | TCTGGTTTAGCAATAGTGTG+GGG | + | chr4.1:23540968-23540987 | MS.gene26625:intron | 40.0% |
| ! | TGGCCGATTCTGAAAATGAT+GGG | + | chr4.1:23541146-23541165 | MS.gene26625:intron | 40.0% |
| ! | TGTCTGGTTTAGCAATAGTG+TGG | + | chr4.1:23540966-23540985 | MS.gene26625:intron | 40.0% |
| ! | TGTGATATGGGATTTTCAGC+AGG | + | chr4.1:23541697-23541716 | MS.gene26625:CDS | 40.0% |
| ! | TTTTGATGGAAAGTGGGTGT+TGG | + | chr4.1:23540218-23540237 | MS.gene26625:CDS | 40.0% |
| !! | AACTGTTATCAAGAGCACCT+AGG | - | chr4.1:23539597-23539616 | None:intergenic | 40.0% |
| !! | ACTAGGGTGTTATTGGTACA+TGG | + | chr4.1:23540930-23540949 | MS.gene26625:intron | 40.0% |
| !! | ACTGTTATCAAGAGCACCTA+GGG | - | chr4.1:23539596-23539615 | None:intergenic | 40.0% |
| !! | AGGTTTACCGGAATTTTGAC+CGG | + | chr4.1:23539641-23539660 | MS.gene26625:CDS | 40.0% |
| !! | CGAATAAGGCTTTGTTGATG+AGG | + | chr4.1:23539722-23539741 | MS.gene26625:CDS | 40.0% |
| !! | GTTAGCTCTATCAGTATGTC+TGG | + | chr4.1:23541890-23541909 | MS.gene26625:CDS | 40.0% |
| !! | TCCCTGTTTCTATATCAAGC+TGG | - | chr4.1:23539813-23539832 | None:intergenic | 40.0% |
| !!! | AAGACAAAGACTGGTTTTGG+TGG | + | chr4.1:23540297-23540316 | MS.gene26625:CDS | 40.0% |
| !!! | CAAGGGCATCAATTTTCAAG+AGG | + | chr4.1:23540042-23540061 | MS.gene26625:CDS | 40.0% |
| !!! | GAGTACAAGACGTTTTTAGC+AGG | + | chr4.1:23541251-23541270 | MS.gene26625:intron | 40.0% |
| !!! | GTCTTCGTTGTTTTTGACGA+AGG | - | chr4.1:23539140-23539159 | None:intergenic | 40.0% |
| AAGCTTTACCTTCACATCGG+CGG | + | chr4.1:23539064-23539083 | MS.gene26625:CDS | 45.0% | |
| ACAGTGCTCACGAATGTTAC+AGG | + | chr4.1:23541726-23541745 | MS.gene26625:CDS | 45.0% | |
| ACGATGTTGCTCAAGGTCAA+TGG | + | chr4.1:23539182-23539201 | MS.gene26625:CDS | 45.0% | |
| ACGGTAAGGAGTTTATCGGT+TGG | + | chr4.1:23539425-23539444 | MS.gene26625:CDS | 45.0% | |
| AGGAGATGGTTCAATTGTGG+TGG | + | chr4.1:23540092-23540111 | MS.gene26625:CDS | 45.0% | |
| AGGGTCACAATTGGATCCTT+CGG | + | chr4.1:23539906-23539925 | MS.gene26625:CDS | 45.0% | |
| ATAGGAGTTGCTACCACCAA+CGG | - | chr4.1:23541866-23541885 | None:intergenic | 45.0% | |
| ATCACCGACGGAAGAGAATA+AGG | + | chr4.1:23539393-23539412 | MS.gene26625:CDS | 45.0% | |
| ATTGTTGAAGCTCACTCCTC+TGG | + | chr4.1:23540350-23540369 | MS.gene26625:CDS | 45.0% | |
| CACAACAACGATGTTGCTCA+AGG | + | chr4.1:23539175-23539194 | MS.gene26625:CDS | 45.0% | |
| CACTCCTCTGGATTCACATT+TGG | + | chr4.1:23540362-23540381 | MS.gene26625:CDS | 45.0% | |
| CAGGGAAGATTGTTTCAGAG+TGG | + | chr4.1:23539827-23539846 | MS.gene26625:CDS | 45.0% | |
| CGTTGGAGACGAAATCAACA+CGG | - | chr4.1:23539282-23539301 | None:intergenic | 45.0% | |
| CTGATGAGTCCCTTGAATAG+TGG | + | chr4.1:23539763-23539782 | MS.gene26625:CDS | 45.0% | |
| CTGGTTTAGCAATAGTGTGG+GGG | + | chr4.1:23540969-23540988 | MS.gene26625:intron | 45.0% | |
| GAATTCCCCGGTCAAAATTC+CGG | - | chr4.1:23539651-23539670 | None:intergenic | 45.0% | |
| GAGATGGTTCAATTGTGGTG+GGG | + | chr4.1:23540094-23540113 | MS.gene26625:CDS | 45.0% | |
| GAGTTTGAAGAGGCTGCAAA+TGG | + | chr4.1:23539553-23539572 | MS.gene26625:CDS | 45.0% | |
| GCTCTATCAGTATGTCTGGA+AGG | + | chr4.1:23541894-23541913 | MS.gene26625:CDS | 45.0% | |
| GGAAACAGCATCTTCCCAAA+CGG | - | chr4.1:23539476-23539495 | None:intergenic | 45.0% | |
| GGAGAGAATCCATTTAGCGT+TGG | - | chr4.1:23539098-23539117 | None:intergenic | 45.0% | |
| GGAGATGGTTCAATTGTGGT+GGG | + | chr4.1:23540093-23540112 | MS.gene26625:CDS | 45.0% | |
| GGAGTGAGCTTCAACAATCT+AGG | - | chr4.1:23540348-23540367 | None:intergenic | 45.0% | |
| GGGATGAAGATTGAACGTCT+TGG | - | chr4.1:23538919-23538938 | None:intergenic | 45.0% | |
| GGGCAAGTTCAGTGTGATAT+GGG | + | chr4.1:23541685-23541704 | MS.gene26625:CDS | 45.0% | |
| GGGGTAGCTGTGAAATATGA+AGG | + | chr4.1:23539676-23539695 | MS.gene26625:CDS | 45.0% | |
| GGTATTCAAACCCTAACCCT+AGG | + | chr4.1:23539577-23539596 | MS.gene26625:CDS | 45.0% | |
| GGTCTCTTGATGGGAAGATA+AGG | + | chr4.1:23540115-23540134 | MS.gene26625:CDS | 45.0% | |
| GTCGTAATCTGAGTCGGAAT+CGG | - | chr4.1:23538855-23538874 | None:intergenic | 45.0% | |
| GTCTAGAGGTGATTTGATGG+AGG | + | chr4.1:23539531-23539550 | MS.gene26625:CDS | 45.0% | |
| GTTACCATGTGCGGAAACTA+GGG | + | chr4.1:23540914-23540933 | MS.gene26625:intron | 45.0% | |
| TATAGCTACAGCTAGTTCGC+CGG | + | chr4.1:23540005-23540024 | MS.gene26625:CDS | 45.0% | |
| TCATGGTGGCCATTTCTCAT+GGG | + | chr4.1:23540404-23540423 | MS.gene26625:CDS | 45.0% | |
| TCGGTCTAGAGGTGATTTGA+TGG | + | chr4.1:23539528-23539547 | MS.gene26625:CDS | 45.0% | |
| TGGGCAAGTTCAGTGTGATA+TGG | + | chr4.1:23541684-23541703 | MS.gene26625:CDS | 45.0% | |
| TGTTACCATGTGCGGAAACT+AGG | + | chr4.1:23540913-23540932 | MS.gene26625:intron | 45.0% | |
| TTCAGTGACGAATTTCCGGT+AGG | - | chr4.1:23539338-23539357 | None:intergenic | 45.0% | |
| TTCATGGTGGCCATTTCTCA+TGG | + | chr4.1:23540403-23540422 | MS.gene26625:CDS | 45.0% | |
| TTTGAAGAGGCTGCAAATGG+TGG | + | chr4.1:23539556-23539575 | MS.gene26625:CDS | 45.0% | |
| TTTGACCGGGGAATTCGAAA+GGG | + | chr4.1:23539655-23539674 | MS.gene26625:CDS | 45.0% | |
| ! | CAGAAAGTGTATGACCCACT+AGG | - | chr4.1:23540999-23541018 | None:intergenic | 45.0% |
| ! | CGGTAAGGAGTTTATCGGTT+GGG | + | chr4.1:23539426-23539445 | MS.gene26625:CDS | 45.0% |
| ! | CTTCGGAGTCGACGTTTTTA+GGG | + | chr4.1:23539923-23539942 | MS.gene26625:CDS | 45.0% |
| ! | GTCTTTCAGGTCACTGAGAA+TGG | + | chr4.1:23541632-23541651 | MS.gene26625:intron | 45.0% |
| ! | TGCGGAAACTAGGGTGTTAT+TGG | + | chr4.1:23540923-23540942 | MS.gene26625:intron | 45.0% |
| ! | TTTTGACCGGGGAATTCGAA+AGG | + | chr4.1:23539654-23539673 | MS.gene26625:CDS | 45.0% |
| !! | ATCAAGAGCACCTAGGGTTA+GGG | - | chr4.1:23539590-23539609 | None:intergenic | 45.0% |
| !! | ATGCTGGCTTTCAGGTTTAC+CGG | + | chr4.1:23539629-23539648 | MS.gene26625:CDS | 45.0% |
| !! | CGTGTTGATTTCGTCTCCAA+CGG | + | chr4.1:23539280-23539299 | MS.gene26625:CDS | 45.0% |
| !! | GAAGATGCTGTTTCCGATGA+TGG | + | chr4.1:23539481-23539500 | MS.gene26625:CDS | 45.0% |
| !! | GAGGTTGGTGGAATGTGATT+GGG | - | chr4.1:23538939-23538958 | None:intergenic | 45.0% |
| !! | GGGTGTTATTGGTACATGGA+TGG | + | chr4.1:23540934-23540953 | MS.gene26625:intron | 45.0% |
| !! | GGTTTACCGGAATTTTGACC+GGG | + | chr4.1:23539642-23539661 | MS.gene26625:CDS | 45.0% |
| !! | GTTTACCGGAATTTTGACCG+GGG | + | chr4.1:23539643-23539662 | MS.gene26625:CDS | 45.0% |
| !! | TATCAAGAGCACCTAGGGTT+AGG | - | chr4.1:23539591-23539610 | None:intergenic | 45.0% |
| !! | TCTCAATGATGCTGGCTTTC+AGG | + | chr4.1:23539621-23539640 | MS.gene26625:CDS | 45.0% |
| !! | TTGACAGCGTTTTTGGGAAG+TGG | - | chr4.1:23539046-23539065 | None:intergenic | 45.0% |
| !!! | ACTGGTTTTGGTGGTCGTAT+GGG | + | chr4.1:23540306-23540325 | MS.gene26625:CDS | 45.0% |
| !!! | GGGAAGACAAAGACTGGTTT+TGG | + | chr4.1:23540294-23540313 | MS.gene26625:CDS | 45.0% |
| !!! | GTTGTTTTTGACGAAGGCGT+AGG | - | chr4.1:23539134-23539153 | None:intergenic | 45.0% |
| AACACCCTAGTTTCCGCACA+TGG | - | chr4.1:23540921-23540940 | None:intergenic | 50.0% | |
| ACTTGCCCACAGTTGCAACA+AGG | - | chr4.1:23541673-23541692 | None:intergenic | 50.0% | |
| AGTGTGGGGGTAAACCTAGT+GGG | + | chr4.1:23540982-23541001 | MS.gene26625:intron | 50.0% | |
| ATCGATGAGGATGGCGAAGA+CGG | + | chr4.1:23540152-23540171 | MS.gene26625:CDS | 50.0% | |
| ATGTGGCGCTCCACTATTCA+AGG | - | chr4.1:23539776-23539795 | None:intergenic | 50.0% | |
| ATTTCGTCTCCAACGGTGTC+TGG | + | chr4.1:23539287-23539306 | MS.gene26625:CDS | 50.0% | |
| CCAGATGCAAGTATGCAGCA+TGG | - | chr4.1:23541525-23541544 | None:intergenic | 50.0% | |
| CCAGCCAAATGTGAATCCAG+AGG | - | chr4.1:23540369-23540388 | None:intergenic | 50.0% | |
| CCATGCTGCATACTTGCATC+TGG | + | chr4.1:23541522-23541541 | MS.gene26625:intron | 50.0% | |
| CCTCTGGATTCACATTTGGC+TGG | + | chr4.1:23540366-23540385 | MS.gene26625:CDS | 50.0% | |
| CCTTGGTTCCAATGCAACAC+CGG | - | chr4.1:23540027-23540046 | None:intergenic | 50.0% | |
| CGGTTCAAAAATCCGCGCTA+GGG | + | chr4.1:23539216-23539235 | MS.gene26625:CDS | 50.0% | |
| GCAACACTCCCAACGCTAAA+TGG | + | chr4.1:23539086-23539105 | MS.gene26625:CDS | 50.0% | |
| GGTCGTATGGGAAACAGGAT+AGG | + | chr4.1:23540318-23540337 | MS.gene26625:CDS | 50.0% | |
| TAGTGTGGGGGTAAACCTAG+TGG | + | chr4.1:23540981-23541000 | MS.gene26625:intron | 50.0% | |
| TCGGTTCAAAAATCCGCGCT+AGG | + | chr4.1:23539215-23539234 | MS.gene26625:CDS | 50.0% | |
| TGCTTTGCGACTACAGGAGA+TGG | + | chr4.1:23540078-23540097 | MS.gene26625:CDS | 50.0% | |
| TGGATGGAACTTCTGCTGTC+TGG | + | chr4.1:23540950-23540969 | MS.gene26625:intron | 50.0% | |
| TGGTTCAGCTTCGAAGCATG+TGG | - | chr4.1:23539793-23539812 | None:intergenic | 50.0% | |
| TGTGGCGCTCCACTATTCAA+GGG | - | chr4.1:23539775-23539794 | None:intergenic | 50.0% | |
| TTCCCAAACGGAATCATCCG+CGG | - | chr4.1:23539464-23539483 | None:intergenic | 50.0% | |
| TTCCCACCGATGAATCCTAC+CGG | + | chr4.1:23539320-23539339 | MS.gene26625:CDS | 50.0% | |
| TTCCGGTAGGATTCATCGGT+GGG | - | chr4.1:23539325-23539344 | None:intergenic | 50.0% | |
| TTGACCGGGGAATTCGAAAG+GGG | + | chr4.1:23539656-23539675 | MS.gene26625:CDS | 50.0% | |
| TTTAAGAGCCCAGACACCGT+TGG | - | chr4.1:23539299-23539318 | None:intergenic | 50.0% | |
| TTTCCGGTAGGATTCATCGG+TGG | - | chr4.1:23539326-23539345 | None:intergenic | 50.0% | |
| TTTCGTCTCCAACGGTGTCT+GGG | + | chr4.1:23539288-23539307 | MS.gene26625:CDS | 50.0% | |
| ! | ATTGTGGTGGGGTCTCTTGA+TGG | + | chr4.1:23540105-23540124 | MS.gene26625:CDS | 50.0% |
| ! | CCTTCGGAGTCGACGTTTTT+AGG | + | chr4.1:23539922-23539941 | MS.gene26625:CDS | 50.0% |
| ! | GTTTATCGGTTGGGTGAAGC+CGG | + | chr4.1:23539435-23539454 | MS.gene26625:CDS | 50.0% |
| ! | TTGGTGGTCGTATGGGAAAC+AGG | + | chr4.1:23540313-23540332 | MS.gene26625:CDS | 50.0% |
| ! | TTGTGGTGGGGTCTCTTGAT+GGG | + | chr4.1:23540106-23540125 | MS.gene26625:CDS | 50.0% |
| !! | CCTAAAAACGTCGACTCCGA+AGG | - | chr4.1:23539925-23539944 | None:intergenic | 50.0% |
| !! | CGAGGTTGGTGGAATGTGAT+TGG | - | chr4.1:23538940-23538959 | None:intergenic | 50.0% |
| !! | CGGTGTTGCATTGGAACCAA+GGG | + | chr4.1:23540025-23540044 | MS.gene26625:CDS | 50.0% |
| !! | GTTTAGCGTCGACATCATCG+AGG | - | chr4.1:23538958-23538977 | None:intergenic | 50.0% |
| !! | GTTTTTGACGAAGGCGTAGG+AGG | - | chr4.1:23539131-23539150 | None:intergenic | 50.0% |
| !!! | GACTGGTTTTGGTGGTCGTA+TGG | + | chr4.1:23540305-23540324 | MS.gene26625:CDS | 50.0% |
| !!! | GGAGTCGACGTTTTTAGGGT+TGG | + | chr4.1:23539927-23539946 | MS.gene26625:CDS | 50.0% |
| AAGCCGCGGATGATTCCGTT+TGG | + | chr4.1:23539458-23539477 | MS.gene26625:CDS | 55.0% | |
| ACGCCACCTTGTTGCAACTG+TGG | + | chr4.1:23541664-23541683 | MS.gene26625:CDS | 55.0% | |
| ACTCTTCCCGGAGCCATCAT+CGG | - | chr4.1:23539497-23539516 | None:intergenic | 55.0% | |
| AGCCGCGGATGATTCCGTTT+GGG | + | chr4.1:23539459-23539478 | MS.gene26625:CDS | 55.0% | |
| ATAAGGCTCCGGACTCTTCC+CGG | - | chr4.1:23539509-23539528 | None:intergenic | 55.0% | |
| CCTCTAGACCGATAAGGCTC+CGG | - | chr4.1:23539520-23539539 | None:intergenic | 55.0% | |
| CGCCACCTTGTTGCAACTGT+GGG | + | chr4.1:23541665-23541684 | MS.gene26625:CDS | 55.0% | |
| CGGAAAATTCACGGCCTTCG+CGG | - | chr4.1:23538835-23538854 | None:intergenic | 55.0% | |
| CTACCACCAACGGAGCTTCA+GGG | - | chr4.1:23541856-23541875 | None:intergenic | 55.0% | |
| CTACCCCCTTTCGAATTCCC+CGG | - | chr4.1:23539663-23539682 | None:intergenic | 55.0% | |
| GGAAAATTCACGGCCTTCGC+GGG | - | chr4.1:23538834-23538853 | None:intergenic | 55.0% | |
| GGCGTAGGAGGTTCGTTTGT+CGG | - | chr4.1:23539119-23539138 | None:intergenic | 55.0% | |
| GGTACTTCTCAATCCCGCGA+AGG | + | chr4.1:23538818-23538837 | MS.gene26625:CDS | 55.0% | |
| GTAATCGGAGAACCAAGCCC+TGG | - | chr4.1:23540183-23540202 | None:intergenic | 55.0% | |
| GTCGACATCATCGAGGTTGG+TGG | - | chr4.1:23538951-23538970 | None:intergenic | 55.0% | |
| TACCACCAACGGAGCTTCAG+GGG | - | chr4.1:23541855-23541874 | None:intergenic | 55.0% | |
| TGACCGGGGAATTCGAAAGG+GGG | + | chr4.1:23539657-23539676 | MS.gene26625:CDS | 55.0% | |
| TGCCCACAGTTGCAACAAGG+TGG | - | chr4.1:23541670-23541689 | None:intergenic | 55.0% | |
| ! | AAGACGGCTTTTCCAGGGCT+TGG | + | chr4.1:23540168-23540187 | MS.gene26625:CDS | 55.0% |
| ! | ATGGCGAAGACGGCTTTTCC+AGG | + | chr4.1:23540162-23540181 | MS.gene26625:CDS | 55.0% |
| ! | CTGTTTCCGATGATGGCTCC+GGG | + | chr4.1:23539488-23539507 | MS.gene26625:CDS | 55.0% |
| ! | GCTGTTTCCGATGATGGCTC+CGG | + | chr4.1:23539487-23539506 | MS.gene26625:CDS | 55.0% |
| ! | GGAAGAGTCCGGAGCCTTAT+CGG | + | chr4.1:23539509-23539528 | MS.gene26625:CDS | 55.0% |
| ! | TGGCGAAGACGGCTTTTCCA+GGG | + | chr4.1:23540163-23540182 | MS.gene26625:CDS | 55.0% |
| !! | AGCGTCGACATCATCGAGGT+TGG | - | chr4.1:23538954-23538973 | None:intergenic | 55.0% |
| !! | CCGGTGTTGCATTGGAACCA+AGG | + | chr4.1:23540024-23540043 | MS.gene26625:CDS | 55.0% |
| !! | CTAGTTCGCCGGTGTTGCAT+TGG | + | chr4.1:23540016-23540035 | MS.gene26625:CDS | 55.0% |
| ACGGAATCATCCGCGGCTTC+CGG | - | chr4.1:23539457-23539476 | None:intergenic | 60.0% | |
| CCTTATTCGGCGTCTCCTGC+CGG | - | chr4.1:23539711-23539730 | None:intergenic | 60.0% | |
| GCTACCACCAACGGAGCTTC+AGG | - | chr4.1:23541857-23541876 | None:intergenic | 60.0% | |
| TGAAGGTGGGAATCTCCGGC+AGG | + | chr4.1:23539693-23539712 | MS.gene26625:CDS | 60.0% | |
| TGATGGCTCCGGGAAGAGTC+CGG | + | chr4.1:23539498-23539517 | MS.gene26625:CDS | 60.0% | |
| ! | CCGGAGCCTTATCGGTCTAG+AGG | + | chr4.1:23539517-23539536 | MS.gene26625:CDS | 60.0% |
| ! | GAGTGTTGCCGCCGATGTGA+AGG | - | chr4.1:23539075-23539094 | None:intergenic | 60.0% |
| ! | GTTCGGTGGAAACCCTAGCG+CGG | - | chr4.1:23539231-23539250 | None:intergenic | 60.0% |
| CCGGCAGGAGACGCCGAATA+AGG | + | chr4.1:23539708-23539727 | MS.gene26625:CDS | 65.0% | |
| CGACTCCCCTGAAGCTCCGT+TGG | + | chr4.1:23541847-23541866 | MS.gene26625:CDS | 65.0% | |
| CTCCCCTGAAGCTCCGTTGG+TGG | + | chr4.1:23541850-23541869 | MS.gene26625:CDS | 65.0% | |
| TTGGGTGAAGCCGGAAGCCG+CGG | + | chr4.1:23539444-23539463 | MS.gene26625:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 23538815 | 23541928 | 23538815 | ID=MS.gene26625 |
| chr4.1 | mRNA | 23538815 | 23541928 | 23538815 | ID=MS.gene26625.t1;Parent=MS.gene26625 |
| chr4.1 | exon | 23538815 | 23540425 | 23538815 | ID=MS.gene26625.t1.exon1;Parent=MS.gene26625.t1 |
| chr4.1 | CDS | 23538815 | 23540425 | 23538815 | ID=cds.MS.gene26625.t1;Parent=MS.gene26625.t1 |
| chr4.1 | exon | 23541641 | 23541928 | 23541641 | ID=MS.gene26625.t1.exon2;Parent=MS.gene26625.t1 |
| chr4.1 | CDS | 23541641 | 23541928 | 23541641 | ID=cds.MS.gene26625.t1;Parent=MS.gene26625.t1 |
| Gene Sequence |
| Protein sequence |
