AlfalfaGEDB | MS.gene060343

M. sativa cultivar XinJiangDaYe / MS.gene060343

KEGG: -
GO: GO:0003674 GO:0003824 GO:0003830 GO:0005575 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0008375 GO:0009987 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0070085 GO:0071704 GO:0110165 GO:0140096 GO:0140103 GO:1901564
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060343.t1	XP_003609384.2	99.1	110	1	0	1	110	222	331	1.30E-58	235.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene060343.t1	G7JE73	99.1	110	1	0	1	110	222	331	9.5e-59	235.3

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050838	MS.gene060343	-0.810549	1.09E-50	-1.69E-46
MS.gene051234	MS.gene060343	-0.803945	2.74E-49	-1.69E-46
MS.gene051642	MS.gene060343	-0.83086	2.31E-55	-1.69E-46
MS.gene052609	MS.gene060343	-0.833471	5.23E-56	-1.69E-46
MS.gene053143	MS.gene060343	-0.828104	1.08E-54	-1.69E-46
MS.gene055221	MS.gene060343	-0.805816	1.11E-49	-1.69E-46
MS.gene058149	MS.gene060343	-0.824785	6.69E-54	-1.69E-46
MS.gene059778	MS.gene060343	-0.807144	5.83E-50	-1.69E-46
MS.gene060342	MS.gene060343	0.922329	1.13E-88	-1.69E-46
MS.gene060343	MS.gene061100	-0.831774	1.38E-55	-1.69E-46
MS.gene060343	MS.gene061707	-0.830721	2.50E-55	-1.69E-46
MS.gene060343	MS.gene061878	-0.826912	2.09E-54	-1.69E-46
MS.gene060343	MS.gene06238	-0.808813	2.58E-50	-1.69E-46
MS.gene060343	MS.gene06946	-0.80371	3.06E-49	-1.69E-46
MS.gene060343	MS.gene06998	-0.800384	1.48E-48	-1.69E-46
MS.gene060343	MS.gene072641	-0.813602	2.36E-51	-1.69E-46
MS.gene060343	MS.gene072740	-0.823846	1.11E-53	-1.69E-46
MS.gene060343	MS.gene072762	-0.812385	4.35E-51	-1.69E-46
MS.gene060343	MS.gene08157	-0.800775	1.23E-48	-1.69E-46
MS.gene060343	MS.gene08336	-0.805307	1.42E-49	-1.69E-46
MS.gene060343	MS.gene08532	-0.812758	3.61E-51	-1.69E-46
MS.gene060343	MS.gene09021	-0.81304	3.13E-51	-1.69E-46
MS.gene060343	MS.gene09224	-0.814718	1.34E-51	-1.69E-46
MS.gene060343	MS.gene09870	-0.803307	3.71E-49	-1.69E-46
MS.gene060343	MS.gene21651	-0.832111	1.14E-55	-1.69E-46
MS.gene060343	MS.gene22321	-0.820288	7.42E-53	-1.69E-46
MS.gene060343	MS.gene24531	-0.80795	3.93E-50	-1.69E-46
MS.gene060343	MS.gene24903	-0.816234	6.14E-52	-1.69E-46
MS.gene060343	MS.gene25981	0.825225	5.26E-54	-1.69E-46
MS.gene060343	MS.gene26396	-0.828733	7.63E-55	-1.69E-46
MS.gene060343	MS.gene26625	-0.822284	2.57E-53	-1.69E-46
MS.gene060343	MS.gene28632	-0.811652	6.29E-51	-1.69E-46
MS.gene060343	MS.gene28924	-0.814226	1.72E-51	-1.69E-46
MS.gene060343	MS.gene32049	-0.802317	5.94E-49	-1.69E-46
MS.gene060343	MS.gene32688	-0.833618	4.81E-56	-1.69E-46
MS.gene060343	MS.gene33763	-0.800302	1.54E-48	-1.69E-46
MS.gene060343	MS.gene34164	-0.809814	1.57E-50	-1.69E-46
MS.gene060343	MS.gene34950	-0.801579	8.42E-49	-1.69E-46
MS.gene060343	MS.gene36285	-0.832209	1.08E-55	-1.69E-46
MS.gene060343	MS.gene36291	-0.848334	6.55E-60	-1.69E-46
MS.gene060343	MS.gene38302	-0.800486	1.41E-48	-1.69E-46
MS.gene060343	MS.gene39046	-0.82725	1.74E-54	-1.69E-46
MS.gene060343	MS.gene39529	-0.808819	2.57E-50	-1.69E-46
MS.gene060343	MS.gene41088	-0.820983	5.14E-53	-1.69E-46
MS.gene060343	MS.gene41678	-0.801539	8.59E-49	-1.69E-46
MS.gene060343	MS.gene42528	-0.808627	2.82E-50	-1.69E-46
MS.gene060343	MS.gene42653	-0.822145	2.77E-53	-1.69E-46
MS.gene060343	MS.gene44326	-0.816492	5.38E-52	-1.69E-46
MS.gene060343	MS.gene45281	-0.801233	9.92E-49	-1.69E-46
MS.gene060343	MS.gene45857	-0.812612	3.88E-51	-1.69E-46
MS.gene060343	MS.gene46302	-0.838662	2.52E-57	-1.69E-46
MS.gene060343	MS.gene47581	-0.82484	6.49E-54	-1.69E-46
MS.gene060343	MS.gene47601	-0.801877	7.32E-49	-1.69E-46
MS.gene060343	MS.gene49818	-0.821015	5.05E-53	-1.69E-46
MS.gene060343	MS.gene51384	-0.807696	4.45E-50	-1.69E-46
MS.gene060343	MS.gene52170	-0.812002	5.28E-51	-1.69E-46
MS.gene060343	MS.gene53600	-0.818439	1.96E-52	-1.69E-46
MS.gene060343	MS.gene55904	-0.83197	1.23E-55	-1.69E-46
MS.gene060343	MS.gene56163	-0.821726	3.46E-53	-1.69E-46
MS.gene060343	MS.gene58058	0.955362	3.61E-113	-1.69E-46
MS.gene060343	MS.gene58059	0.863772	1.96E-64	-1.69E-46
MS.gene060343	MS.gene58134	-0.80373	3.03E-49	-1.69E-46
MS.gene060343	MS.gene60978	-0.816442	5.52E-52	-1.69E-46
MS.gene060343	MS.gene61204	-0.809785	1.59E-50	-1.69E-46
MS.gene060343	MS.gene63930	-0.805967	1.03E-49	-1.69E-46
MS.gene060343	MS.gene67881	-0.840744	7.23E-58	-1.69E-46
MS.gene060343	MS.gene68106	-0.834074	3.70E-56	-1.69E-46
MS.gene060343	MS.gene68107	-0.837297	5.65E-57	-1.69E-46
MS.gene060343	MS.gene68418	-0.807751	4.34E-50	-1.69E-46
MS.gene060343	MS.gene68420	-0.838975	2.09E-57	-1.69E-46
MS.gene060343	MS.gene69097	-0.811413	7.09E-51	-1.69E-46
MS.gene060343	MS.gene74235	-0.83456	2.79E-56	-1.69E-46
MS.gene060343	MS.gene74606	-0.81523	1.03E-51	-1.69E-46
MS.gene060343	MS.gene74972	-0.807239	5.57E-50	-1.69E-46
MS.gene060343	MS.gene76228	-0.811033	8.57E-51	-1.69E-46
MS.gene060343	MS.gene80201	-0.826038	3.38E-54	-1.69E-46
MS.gene060343	MS.gene81525	0.836651	8.26E-57	-1.69E-46
MS.gene060343	MS.gene81751	-0.805983	1.03E-49	-1.69E-46
MS.gene060343	MS.gene82912	-0.818241	2.17E-52	-1.69E-46
MS.gene060343	MS.gene82989	-0.824178	9.29E-54	-1.69E-46
MS.gene060343	MS.gene85610	-0.817011	4.11E-52	-1.69E-46
MS.gene060343	MS.gene88032	-0.8234	1.41E-53	-1.69E-46
MS.gene060343	MS.gene89100	-0.817711	2.86E-52	-1.69E-46
MS.gene060343	MS.gene89106	-0.833101	6.47E-56	-1.69E-46
MS.gene060343	MS.gene89369	-0.808463	3.06E-50	-1.69E-46
MS.gene060343	MS.gene90121	-0.833011	6.81E-56	-1.69E-46
MS.gene060343	MS.gene90536	0.835203	1.92E-56	-1.69E-46
MS.gene060343	MS.gene90778	-0.829942	3.88E-55	-1.69E-46
MS.gene060343	MS.gene93728	-0.829383	5.31E-55	-1.69E-46
MS.gene060343	MS.gene95235	-0.821165	4.67E-53	-1.69E-46
MS.gene060343	MS.gene96190	-0.825087	5.68E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 30 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GCCCGAAGAATACTCCTTTC+AGG	0.283433	8.3:+12141685	MS.gene060343:CDS
GATCATCTCCCTTGCAAATA+AGG	0.299752	8.3:-12141649	None:intergenic
CTTGAATTCTTGAATGACTA+AGG	0.393185	8.3:-12141625	None:intergenic
CTCCTGAAAGGAGTATTCTT+CGG	0.405596	8.3:-12141687	None:intergenic
TCCTGAAAGGAGTATTCTTC+GGG	0.415421	8.3:-12141686	None:intergenic
ACGGTCCCCGGTCTAATTAC+CGG	0.446231	8.3:+12141471	MS.gene060343:CDS
CGCCAGCTGTTGTAGTCCAC+AGG	0.447034	8.3:-12141431	None:intergenic
AATTCAAGACCTTATTTGCA+AGG	0.500490	8.3:+12141640	MS.gene060343:CDS
CTGAGAAGATAACATCGGTC+TGG	0.501527	8.3:-12141502	None:intergenic
GCCACGCCGACCGTGTGAAA+CGG	0.512900	8.3:+12141594	MS.gene060343:CDS
CATCGGTCTGGCGCGAATGC+CGG	0.524753	8.3:-12141490	None:intergenic
CGAATGCCGGTAATTAGACC+GGG	0.532797	8.3:-12141477	None:intergenic
GCGAATGCCGGTAATTAGAC+CGG	0.534546	8.3:-12141478	None:intergenic
ATTCAAGACCTTATTTGCAA+GGG	0.538163	8.3:+12141641	MS.gene060343:CDS
CAGCCCATGTCTACGGTCCC+CGG	0.543615	8.3:+12141459	MS.gene060343:CDS
CGAGCGACAGCCCATGTCTA+CGG	0.544052	8.3:+12141452	MS.gene060343:CDS
TCCCTGTGGACTACAACAGC+TGG	0.568994	8.3:+12141429	MS.gene060343:CDS
TTATCTTCTCAGACGCGGGA+TGG	0.582193	8.3:+12141513	MS.gene060343:CDS
GATGTTATCTTCTCAGACGC+GGG	0.583396	8.3:+12141509	MS.gene060343:CDS
TAGACCGGGGACCGTAGACA+TGG	0.590389	8.3:-12141463	None:intergenic
GGAAAGACCTCCGTTTCACA+CGG	0.611357	8.3:-12141604	None:intergenic
AGACCTCCGTTTCACACGGT+CGG	0.622233	8.3:-12141600	None:intergenic
TCCGTTTCACACGGTCGGCG+TGG	0.626436	8.3:-12141595	None:intergenic
CGATGTTATCTTCTCAGACG+CGG	0.644839	8.3:+12141508	MS.gene060343:CDS
GTATTCATTTGAGTTCCCTG+TGG	0.649334	8.3:+12141415	MS.gene060343:CDS
ACGCCGACCGTGTGAAACGG+AGG	0.662932	8.3:+12141597	MS.gene060343:CDS
AGACCGGGGACCGTAGACAT+GGG	0.678926	8.3:-12141462	None:intergenic
GCCAGCTGTTGTAGTCCACA+GGG	0.679316	8.3:-12141430	None:intergenic
CGCGTCTGAGAAGATAACAT+CGG	0.723208	8.3:-12141507	None:intergenic
GAATGCCGGTAATTAGACCG+GGG	0.739409	8.3:-12141476	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CTTGAATTCTTGAATGACTA+AGG	-	chr8.3:12141628-12141647	None:intergenic	30.0%
!	AATTCAAGACCTTATTTGCA+AGG	+	chr8.3:12141640-12141659	MS.gene060343:CDS	30.0%
!	AGGAGTTGATTAAAAAGATG+GGG	+	chr8.3:12141705-12141724	MS.gene060343:CDS	30.0%
!	ATTCAAGACCTTATTTGCAA+GGG	+	chr8.3:12141641-12141660	MS.gene060343:CDS	30.0%
!	CAGGAGTTGATTAAAAAGAT+GGG	+	chr8.3:12141704-12141723	MS.gene060343:CDS	30.0%
!	CTTTTTAATCAACTCCTGAA+AGG	-	chr8.3:12141702-12141721	None:intergenic	30.0%
!	TCAGGAGTTGATTAAAAAGA+TGG	+	chr8.3:12141703-12141722	MS.gene060343:CDS	30.0%
!	GGCATTGTAGTTTTTGCTTT+CGG	+	chr8.3:12141534-12141553	MS.gene060343:CDS	35.0%
	GATCATCTCCCTTGCAAATA+AGG	-	chr8.3:12141652-12141671	None:intergenic	40.0%
!	GTATTCATTTGAGTTCCCTG+TGG	+	chr8.3:12141415-12141434	MS.gene060343:CDS	40.0%
!!	CTCCTGAAAGGAGTATTCTT+CGG	-	chr8.3:12141690-12141709	None:intergenic	40.0%
!!	TCCTGAAAGGAGTATTCTTC+GGG	-	chr8.3:12141689-12141708	None:intergenic	40.0%
	CGATGTTATCTTCTCAGACG+CGG	+	chr8.3:12141508-12141527	MS.gene060343:CDS	45.0%
	CGCGTCTGAGAAGATAACAT+CGG	-	chr8.3:12141510-12141529	None:intergenic	45.0%
	CTGAGAAGATAACATCGGTC+TGG	-	chr8.3:12141505-12141524	None:intergenic	45.0%
	GATGTTATCTTCTCAGACGC+GGG	+	chr8.3:12141509-12141528	MS.gene060343:CDS	45.0%
	CGAATGCCGGTAATTAGACC+GGG	-	chr8.3:12141480-12141499	None:intergenic	50.0%
	GAATGCCGGTAATTAGACCG+GGG	-	chr8.3:12141479-12141498	None:intergenic	50.0%
	GCCCGAAGAATACTCCTTTC+AGG	+	chr8.3:12141685-12141704	MS.gene060343:CDS	50.0%
	GCGAATGCCGGTAATTAGAC+CGG	-	chr8.3:12141481-12141500	None:intergenic	50.0%
	GGAAAGACCTCCGTTTCACA+CGG	-	chr8.3:12141607-12141626	None:intergenic	50.0%
	TTATCTTCTCAGACGCGGGA+TGG	+	chr8.3:12141513-12141532	MS.gene060343:CDS	50.0%
	ACGGTCCCCGGTCTAATTAC+CGG	+	chr8.3:12141471-12141490	MS.gene060343:CDS	55.0%
	AGACCTCCGTTTCACACGGT+CGG	-	chr8.3:12141603-12141622	None:intergenic	55.0%
	GCCAGCTGTTGTAGTCCACA+GGG	-	chr8.3:12141433-12141452	None:intergenic	55.0%
!	TCCCTGTGGACTACAACAGC+TGG	+	chr8.3:12141429-12141448	MS.gene060343:CDS	55.0%
	AGACCGGGGACCGTAGACAT+GGG	-	chr8.3:12141465-12141484	None:intergenic	60.0%
	CGAGCGACAGCCCATGTCTA+CGG	+	chr8.3:12141452-12141471	MS.gene060343:CDS	60.0%
	CGCCAGCTGTTGTAGTCCAC+AGG	-	chr8.3:12141434-12141453	None:intergenic	60.0%
	TAGACCGGGGACCGTAGACA+TGG	-	chr8.3:12141466-12141485	None:intergenic	60.0%
	ACGCCGACCGTGTGAAACGG+AGG	+	chr8.3:12141597-12141616	MS.gene060343:CDS	65.0%
	CAGCCCATGTCTACGGTCCC+CGG	+	chr8.3:12141459-12141478	MS.gene060343:CDS	65.0%
	CATCGGTCTGGCGCGAATGC+CGG	-	chr8.3:12141493-12141512	None:intergenic	65.0%
	GCCACGCCGACCGTGTGAAA+CGG	+	chr8.3:12141594-12141613	MS.gene060343:CDS	65.0%
	TCCGTTTCACACGGTCGGCG+TGG	-	chr8.3:12141598-12141617	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	12141406	12141737	12141406	ID=MS.gene060343
chr8.3	mRNA	12141406	12141737	12141406	ID=MS.gene060343.t1;Parent=MS.gene060343
chr8.3	exon	12141406	12141737	12141406	ID=MS.gene060343.t1.exon1;Parent=MS.gene060343.t1
chr8.3	CDS	12141406	12141737	12141406	ID=cds.MS.gene060343.t1;Parent=MS.gene060343.t1

Gene Sequence	>MS.gene060343 AAACTACATGTATTCATTTGAGTTCCCTGTGGACTACAACAGCTGGCGAGCGACAGCCCATGTCTACGGTCCCCGGTCTAATTACCGGCATTCGCGCCAGACCGATGTTATCTTCTCAGACGCGGGATGGCATTGTAGTTTTTGCTTTCGGTATATTTCAGAGTTTGTTTTCAAAATGACTGCTTATAGCCACGCCGACCGTGTGAAACGGAGGTCTTTCCTTAGTCATTCAAGAATTCAAGACCTTATTTGCAAGGGAGATGATCTTTTTGATATGCTGCCCGAAGAATACTCCTTTCAGGAGTTGATTAAAAAGATGGGGTCAATACCTC
Protein sequence	>MS.gene060343.t1 KLHVFIUVPCGLQQLASDSPCLRSPVULPAFAPDRCYLLRRGMALUFLLSVYFRVCFQNDCLUPRRPCETEVFPUSFKNSRPYLQGRUSFUYAARRILLSGVDUKDGVNT