AlfalfaGEDB | MS.gene26899

M. sativa cultivar XinJiangDaYe / MS.gene26899

KEGG: -
GO: GO:0003674 GO:0003824
PFAM: PF01063.22

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26899.t1	XP_013469854.1	94.5	345	17	1	1	343	1	345	3.50E-185	657.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26899.t1	A0A072VQ35	94.5	345	17	1	1	343	1	345	2.5e-185	657.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049272	MS.gene26899	0.807516	4.87E-50	-1.69E-46
MS.gene049435	MS.gene26899	0.811059	8.46E-51	-1.69E-46
MS.gene051190	MS.gene26899	0.806458	8.15E-50	-1.69E-46
MS.gene052190	MS.gene26899	0.827152	1.83E-54	-1.69E-46
MS.gene052333	MS.gene26899	0.823815	1.13E-53	-1.69E-46
MS.gene052586	MS.gene26899	0.820839	5.55E-53	-1.69E-46
MS.gene053054	MS.gene26899	-0.813504	2.47E-51	-1.69E-46
MS.gene053147	MS.gene26899	0.815334	9.75E-52	-1.69E-46
MS.gene053966	MS.gene26899	0.802793	4.74E-49	-1.69E-46
MS.gene054291	MS.gene26899	-0.83299	6.90E-56	-1.69E-46

Showing 1 to 10 of 17 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26899.t1	MTR_1g103900	94.493	345	17	1	1	343	1	345	0.0	674
MS.gene26899.t1	MTR_1g030720	91.667	348	27	1	1	346	1	348	0.0	655
MS.gene26899.t1	MTR_1g030720	91.884	345	26	1	1	343	1	345	0.0	652
MS.gene26899.t1	MTR_1g103870	79.710	345	67	2	1	343	1	344	0.0	567
MS.gene26899.t1	MTR_1g103870	78.810	269	54	2	1	267	1	268	8.49e-153	431
MS.gene26899.t1	MTR_1g030710	68.981	216	16	1	52	267	1	165	6.36e-96	283

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene26899.t1	AT3G54970	50.282	354	147	8	1	343	1	336	6.56e-110	325
MS.gene26899.t1	AT3G54970	51.634	306	120	7	1	296	1	288	3.86e-96	288
MS.gene26899.t1	AT3G54970	51.307	306	121	7	1	296	1	288	8.00e-96	287
MS.gene26899.t1	AT3G54970	49.505	303	127	7	52	343	1	288	5.29e-87	265
MS.gene26899.t1	AT3G54970	49.097	277	113	7	1	267	1	259	1.24e-77	239
MS.gene26899.t1	AT3G54970	50.980	255	100	6	52	296	1	240	1.49e-73	229

Showing 1 to 6 of 6 entries

Previous1Next

Find 79 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTGGAAGGATATATCA+TGG	0.531561	1.4:-80366144	MS.gene26899:CDS
AACAGTTCTGTTACTGATGG+AGG	0.598319	1.4:+80368203	None:intergenic
AATCAGCCCATTCTAAAACG+TGG	0.689169	1.4:-80366159	MS.gene26899:CDS
AATGGTGATCAAATACTCGA+AGG	0.635890	1.4:-80368170	MS.gene26899:CDS
ACACTTGTGCAGGGTATGCA+GGG	0.560761	1.4:-80366768	MS.gene26899:intron
ACCCTCTCTTTCAATGCGAT+GGG	0.533023	1.4:+80368766	None:intergenic
ACTAGTTGACGTATTATCCC+TGG	0.595519	1.4:+80367393	None:intergenic
ACTTATGTTCCTCCTCAGTT+TGG	0.388161	1.4:-80368625	MS.gene26899:CDS
ACTTGAAAATTTGGTGCCAG+TGG	0.579774	1.4:+80368841	None:intergenic
AGCAACAGTTCTGTTACTGA+TGG	0.560687	1.4:+80368200	None:intergenic

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTTTATGCACTGAACTT+TGG	-	chr1.4:80366743-80366762	MS.gene26899:CDS	30.0%
AAGACCACAAACTTTGTAAA+TGG	+	chr1.4:80368726-80368745	None:intergenic	30.0%
AGTTGTCTTGACTTTAGTAA+TGG	-	chr1.4:80366284-80366303	MS.gene26899:intron	30.0%
ATGGACAAAAAAGCAATTTC+AGG	-	chr1.4:80368510-80368529	MS.gene26899:intron	30.0%
ATGGTCAGAACATGAAATTT+GGG	-	chr1.4:80367924-80367943	MS.gene26899:intron	30.0%
ATTAATGTTGTGATAATCCC+AGG	+	chr1.4:80368614-80368633	None:intergenic	30.0%
CAACGTGACAAACAAATAAT+AGG	+	chr1.4:80366850-80366869	None:intergenic	30.0%
CAATGTTAGGAAATATGACT+TGG	+	chr1.4:80368978-80368997	None:intergenic	30.0%
CAGATTAACAAGAGTTGTAA+TGG	+	chr1.4:80365912-80365931	None:intergenic	30.0%
CATTACAACTCTTGTTAATC+TGG	-	chr1.4:80365910-80365929	MS.gene26899:intron	30.0%

Showing 1 to 10 of 229 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	80365469	80369188	80365469	ID=MS.gene26899
chr1.4	mRNA	80365469	80369188	80365469	ID=MS.gene26899.t1;Parent=MS.gene26899
chr1.4	exon	80369098	80369188	80369098	ID=MS.gene26899.t1.exon1;Parent=MS.gene26899.t1
chr1.4	CDS	80369098	80369188	80369098	ID=cds.MS.gene26899.t1;Parent=MS.gene26899.t1
chr1.4	exon	80368544	80369012	80368544	ID=MS.gene26899.t1.exon2;Parent=MS.gene26899.t1
chr1.4	CDS	80368544	80369012	80368544	ID=cds.MS.gene26899.t1;Parent=MS.gene26899.t1
chr1.4	exon	80368136	80368253	80368136	ID=MS.gene26899.t1.exon3;Parent=MS.gene26899.t1
chr1.4	CDS	80368136	80368253	80368136	ID=cds.MS.gene26899.t1;Parent=MS.gene26899.t1
chr1.4	exon	80367387	80367508	80367387	ID=MS.gene26899.t1.exon4;Parent=MS.gene26899.t1
chr1.4	CDS	80367387	80367508	80367387	ID=cds.MS.gene26899.t1;Parent=MS.gene26899.t1
chr1.4	exon	80366693	80366778	80366693	ID=MS.gene26899.t1.exon5;Parent=MS.gene26899.t1
chr1.4	CDS	80366693	80366778	80366693	ID=cds.MS.gene26899.t1;Parent=MS.gene26899.t1
chr1.4	exon	80366126	80366235	80366126	ID=MS.gene26899.t1.exon6;Parent=MS.gene26899.t1
chr1.4	CDS	80366126	80366235	80366126	ID=cds.MS.gene26899.t1;Parent=MS.gene26899.t1
chr1.4	exon	80366020	80366052	80366020	ID=MS.gene26899.t1.exon7;Parent=MS.gene26899.t1
chr1.4	CDS	80366020	80366052	80366020	ID=cds.MS.gene26899.t1;Parent=MS.gene26899.t1
chr1.4	exon	80365469	80365507	80365469	ID=MS.gene26899.t1.exon8;Parent=MS.gene26899.t1
chr1.4	CDS	80365469	80365507	80365469	ID=cds.MS.gene26899.t1;Parent=MS.gene26899.t1

Gene Sequence

>MS.gene26899

ATGTCAGGTTCAAGGTTTCTCTTCAGTAATGGCATCCTTTCACAAACTGTAGATGTTCCTCCAGTCAAACTCTTTCTTGAAGCTAATTCAGGTACTTTAGATACATTCAAACATTTAGTAAAATAACTCCTACAAAATACTTTGTCAAATCTTTTCCTGGTTTGTTTCTGGTCCAGGTGCTTACACGACATCACGTACTCACAATAATGCTTCATGCTTGTTATTCTGGGAAAGACACGTGAAAAGACTTTCAGAATCTATACAAATTCTATCAAATTTGGCTCCACAACTTTTGTTTAAATCTAATAATGCTGCAAGTGTGCTGCCACTGGCACCAAATTTTCAAGTTTCGCAACCTGCATTGCAGATGCTTGTTAATGATTCAGTGGGGAAGGTCTTGCCCATCGCATTGAAAGAGAGGGTCGATTCCAAGGAGCTGGCCATTACAACTCTTGTTAATCTGGAGGAACTGAATATGTATGATGAGACTATGAGTGAGGAAAATATGAGCAAATTTTTTGATGTGCATGTGCATATTGAGACTTATGTTCCTCCTCAGTTTGGTATTCGAGGAAATGGTGCACATTTGGCTGTTGCGGGCTATGGGAGGAACGTTGCAGCTGCCAAATATTCGGATTGGGTAAGGTCAGTTTATTATGCTACCTGAGTCTGAATTAGAATACAAGTATTACTGAACTCTTCTATGCTTTTCCTTAAATCCCATATAAGAAAAAACAGGATATTGGTGAGTTAAGGTACAATATCAGAAAGTCTGTTTTTCTTCTCCATTATTATTTGCTTAGAGTGATTTAATGAGTTGTCTTGACTTTAGTAATGGCCTTTGACAATATAAAATTTCAGTAATAATTTTTCCTGCTGCTTGTAGTGCTGATGTTCATTCAGATTACTAGGTATAACTTTTTTCTTCAATGCAGGATTAGGAAGACTCTGGAAAAGCTTAGACCTCCATCAGTAACAGAACTGTTGCTGTCTTATAATGGTGATCAAATACTCGAAGGTTGTGTGACAAACTTTTTCATTATTTGCCGCAAGGTGAGATTATTTTATCTCTCAGCACAACTTATAAGCTTATCGTTGACAAGCTTATTTGATGCTAGAATTTTCTGTGCCCTTTTTGTTAGTAACTATGTGTTTGTATTATCTCCTGAGATTTGAACAAAAATCTGTTGCCTAACACCTAAACGTGGTTGGATTGTCCATGCTTTAATTTCTAAAAGCAACGGGACTTCTGAACTTTGAATTGTTTTAATGCTAAAGTTTATGCACTGAACTTTGGTAGAGATTAACAACCATACCTTTTTATTGAAAACCTTTATCTTCGATTTGCTTTGGATTATGATTAATGTCATAGTGAATTCCTATTATTTGTTTGTCACGTTGATGAATAAATCAATATTTATCGTCTCATTCCATTTCTAGACTTTATTGGTTTTATATTCTGTTTAAAATATTAAGATATTATTGCTTTCCTGACCATTTGATGCTCACTTTCTCAAGATTTCACAAGGCAAAATGGTTTTGATTCTCCTGCTTTTTATGTGTCTGTTTGTTGAGACATTATATGAAATAAGCTTATGTGTTATGGACTTTATTTTATATTTCTTCATGTGGCAAACATGCACATACAAATTTTATTGTTCATTTTTTATTTCATATTAGGATTGGGATTCAGATGATGAGAAGGCTCCATGTGATCATGGAAATAAAAACTCTTTTGAAGTGCAGACAGCTCCTATAAGTGATGGTGTTCTTCCAGGGATAATACGTCAACTAGTGCTTGAGTATGGTTTGTTTATAAATCTAATTCTTTTACTACTTTGTTTTTCTTCAACCACAAAGGAACTATGCCCTTTCTTGAAATTTTTAGCAGAATTTATGTTACTTACTGTGAACTATAGCGCAAAAATATTATAAAACCAGGACTTTATCTCAATATCTCATATTGCTAACAATAAGACTGAGAACAATGCTCTTTTGTTTTTGTTGTGTTTGAATTGTCTGCTGATTGTTTATGGTCTTGTTTGTGTAAATGTGGATGAACTCATTTTTTTCAATCCTCTGCCCAATCAATACAAATTTTAAATTTTGTTTCCTACGATGGAATTCTTAAAACTATTCTGTTATAGATATAAATCTATTTGTCAAATCCGGGTAGGTCCATAAGAGAGCCTTGCTTTCACTAATATTTGGAATTTGTCTTGGCCGTAGAAATGTTCATTTCAAAAGCAAAATGAAACTAGTAATGTTTTTCTTTGTCAGGAAGATGGGAATGAGTAAGTCCAAAAATTATAGAAATAAATTAGACCAATGTCATATTTATATAGGATAGAAAATAGCAAGCACAAACAGGTTTTTCTCATGTGACTGGACATGATTTACACTTGTGCAGGGTATGCAGGGATGAAGGAATCCCATTTCGAGAAGTTTCTCCATCATGGTCAGAACATGAAATTTGGGAGGAAGCATTCATCACAAGTATTTTTTTTGTCTTTTCATTTATTCATCACAAGTGTTATTGAGGATCGAATAGAGCCCAACTTTGCAAAAAAGTTCTTTTGAAAATGTGACTGGCTGACGAAGCCTCATAAAAGCTTTACACTAAAATGACTCCTAGATCTAAATCAATGGCTGAGGGTTTTGATTAAGTCACCACCAGACTGTGGTCTAGAAAAGTAATTATTCTACATTAATAAGCTGTAATTACTTTTCCTCACGAGAAAACTATTTTGTACTGACTTGTAGATGTAGTTGCTTAGCATTTACTAGCTTATCTACGAGTTTGGTAATTTAATTTACAATGACATTGTATTGTGAGTTCAAAATATCAAGCCTTTTTGCAATCTTAAACTATTATTCTACACAAACTTGCAAGATTTCAGTCCTCTGTTTTTGGTTTTCTCTAAAACTCACTTGGGATCTAATGTCATTCCAGGTAGCTTGAGGCTTTTGCAACATGTTGATAGTATTCAGGTTCCAACAGAATGGCAATCAGCCCATTCTAAAACGTGGAAGGATATATCATGGACAAAAAAGCAATTTCAGGTGGTAAATTTTTTAATGTTCCTTCGTTTATATTAATTTTATGTTAAGATTTTCTCAATTTGAGTAAATGCAGGGTGGACCTGGGATTATCACAACATTAATCCAGGTAAATTTATGCATTACTTTCACATTTTGAATTGGGATTGGGGGAGGGAAAGAAAAATAACACTCATCTTCCACTATATATGTATCCATTTACAAAGTTTGTGGTCTTTAAACTTTATTCTGAATAAACTAATCACACTCATGGAGATAAAAAAAAATCTTCAAAGCTTTGACTTAATCAAGATTTTTCTTGTTTCTAATTATGTGTTTGTTTTGGCGCTTGACCACCATGAACGTGCTTTTAAGAGCGCTTTGGAAAGTGAAAATACAGAAGCTACAAATTGTAGCATCTGTCCAAACGCACGTTCAGTACACATCCACCTCCAAACAAACAGGCACCAAGTCATATTTCCTAACATTGCAATTATACTACCAAAATTGCTATTTGTTTTCATCAGGAAAAGATTATGGAGAAAGCGATTTTTGAAGGGTACCCAATAAATAACATATGTACAAGATGAAGATCCTACTTCTTTGCTGGGATGTAGTTGACCTTATATTTCCCACTCGTAGGTTGGTTTATATACTGAGAACGACATAGTTTCTCAATGA

Protein sequence

>MS.gene26899.t1

MSGSRFLFSNGILSQTVDVPPVKLFLEANSGAYTTSRTHNNASCLLFWERHVKRLSESIQILSNLAPQLLFKSNNAASVLPLAPNFQVSQPALQMLVNDSVGKVLPIALKERVDSKELAITTLVNLEELNMYDETMSEENMSKFFDVHVHIETYVPPQFGIRGNGAHLAVAGYGRNVAAAKYSDWVRIRKTLEKLRPPSVTELLLSYNGDQILEGCVTNFFIICRKDWDSDDEKAPCDHGNKNSFEVQTAPISDGVLPGIIRQLVLEVCRDEGIPFREVSPSWSEHEIWEEAFITSSLRLLQHVDSIQVPTEWQSAHSKTWKDISWTKKQFQGGPGIITTLIQVGLYTENDIVSQ