Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26941.t1 | XP_013466066.1 | 98.1 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 3.30E-238 | 833.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26941.t1 | Q9LN62 | 70.3 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 1.6e-172 | 607.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26941.t1 | A0A072VPP4 | 98.1 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 2.3e-238 | 833.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04986 | MS.gene26941 | 0.804226 | 2.39E-49 | -1.69E-46 |
| MS.gene050521 | MS.gene26941 | 0.835201 | 1.93E-56 | -1.69E-46 |
| MS.gene050864 | MS.gene26941 | 0.820991 | 5.12E-53 | -1.69E-46 |
| MS.gene050904 | MS.gene26941 | -0.807328 | 5.33E-50 | -1.69E-46 |
| MS.gene055251 | MS.gene26941 | 0.822974 | 1.78E-53 | -1.69E-46 |
| MS.gene058111 | MS.gene26941 | 0.819038 | 1.43E-52 | -1.69E-46 |
| MS.gene058171 | MS.gene26941 | 0.807674 | 4.50E-50 | -1.69E-46 |
| MS.gene058173 | MS.gene26941 | 0.808442 | 3.09E-50 | -1.69E-46 |
| MS.gene058175 | MS.gene26941 | 0.812711 | 3.70E-51 | -1.69E-46 |
| MS.gene058334 | MS.gene26941 | 0.803903 | 2.79E-49 | -1.69E-46 |
| MS.gene06042 | MS.gene26941 | 0.841208 | 5.46E-58 | -1.69E-46 |
| MS.gene060929 | MS.gene26941 | 0.821229 | 4.51E-53 | -1.69E-46 |
| MS.gene061044 | MS.gene26941 | 0.83794 | 3.86E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26941.t1 | MTR_1g022025 | 98.131 | 428 | 8 | 0 | 1 | 428 | 1 | 428 | 0.0 | 874 |
| MS.gene26941.t1 | MTR_4g069260 | 73.182 | 440 | 102 | 3 | 1 | 428 | 1 | 436 | 0.0 | 676 |
| MS.gene26941.t1 | MTR_4g069300 | 69.767 | 430 | 123 | 2 | 5 | 427 | 7 | 436 | 0.0 | 618 |
| MS.gene26941.t1 | MTR_4g069430 | 68.545 | 426 | 119 | 5 | 5 | 427 | 7 | 420 | 0.0 | 583 |
| MS.gene26941.t1 | MTR_4g069420 | 65.268 | 429 | 135 | 2 | 5 | 427 | 7 | 427 | 0.0 | 577 |
| MS.gene26941.t1 | MTR_4g069350 | 64.651 | 430 | 138 | 3 | 5 | 427 | 7 | 429 | 0.0 | 568 |
| MS.gene26941.t1 | MTR_4g069390 | 72.832 | 346 | 89 | 1 | 82 | 427 | 12 | 352 | 0.0 | 538 |
| MS.gene26941.t1 | MTR_5g025590 | 27.805 | 205 | 131 | 6 | 145 | 344 | 103 | 295 | 1.19e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene26941.t1 | AT1G19360 | 70.276 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 0.0 | 641 |
| MS.gene26941.t1 | AT1G19360 | 70.276 | 434 | 117 | 3 | 1 | 428 | 1 | 428 | 0.0 | 641 |
| MS.gene26941.t1 | AT1G75110 | 68.736 | 435 | 122 | 4 | 1 | 428 | 1 | 428 | 0.0 | 626 |
| MS.gene26941.t1 | AT1G75120 | 61.631 | 417 | 141 | 2 | 11 | 427 | 5 | 402 | 0.0 | 532 |
| MS.gene26941.t1 | AT2G35610 | 25.120 | 418 | 238 | 17 | 3 | 398 | 8 | 372 | 1.04e-12 | 70.5 |
Find 91 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCTTTGATGAACCTAAAA+TGG | 0.118559 | 1.3:+3034692 | MS.gene26941:CDS |
| AGTTGGCATATCTAATTATT+TGG | 0.214194 | 1.3:+3034377 | MS.gene26941:CDS |
| TATGCCAACTTTCTTGATAT+TGG | 0.231969 | 1.3:-3034364 | None:intergenic |
| CCCCTTTGATTATATTTATA+GGG | 0.245145 | 1.3:+3034608 | MS.gene26941:CDS |
| TTCATCCTTGCAAGTTTATC+AGG | 0.257490 | 1.3:-3035029 | None:intergenic |
| ACCCCTTTGATTATATTTAT+AGG | 0.264534 | 1.3:+3034607 | MS.gene26941:CDS |
| CATAGCAATCATACAGCTTA+TGG | 0.265461 | 1.3:+3034660 | MS.gene26941:CDS |
| TAAAGAGGTCGTTGTTGTTC+TGG | 0.289152 | 1.3:+3034302 | MS.gene26941:CDS |
| ATGCTCATACCATGAGAATA+TGG | 0.294158 | 1.3:+3034727 | MS.gene26941:CDS |
| GAACCTTACTGTTCATAAAA+AGG | 0.300928 | 1.3:-3034935 | None:intergenic |
| AAACACAAGGCTGGTCCTTT+TGG | 0.309663 | 1.3:+3034186 | MS.gene26941:CDS |
| TTCAACGCATTAACTTGTTC+TGG | 0.347234 | 1.3:-3034033 | None:intergenic |
| AGCTCAATTGAAGGAATTGT+TGG | 0.375607 | 1.3:-3034780 | None:intergenic |
| GGTGGGAATCATGCTGTCTC+TGG | 0.396405 | 1.3:+3034501 | MS.gene26941:CDS |
| CCTTCACATCCTGGTTATGA+TGG | 0.408046 | 1.3:+3034879 | MS.gene26941:CDS |
| TCCGAGATGCGGTGATTGAA+TGG | 0.416396 | 1.3:-3032733 | None:intergenic |
| CCCTAGATTGGCAAAACTCT+TGG | 0.417448 | 1.3:+3034263 | MS.gene26941:CDS |
| TGATGAACCTAAAATGGGTT+GGG | 0.421735 | 1.3:+3034698 | MS.gene26941:CDS |
| AAGAAGAACGCCGATGAAAA+CGG | 0.426281 | 1.3:-3032765 | None:intergenic |
| TTCTGTTATTCCCGATGAAT+CGG | 0.434960 | 1.3:+3034236 | MS.gene26941:CDS |
| TAATGTGTTGGAGATGTTAC+AGG | 0.437641 | 1.3:+3034332 | MS.gene26941:CDS |
| TCCCTATAAATATAATCAAA+GGG | 0.442068 | 1.3:-3034609 | None:intergenic |
| ACCAACCTTGTGACTGAGAA+TGG | 0.449721 | 1.3:-3032849 | None:intergenic |
| GAATTCTGAGCTGAAGAAGC+AGG | 0.473704 | 1.3:+3034083 | MS.gene26941:CDS |
| TCTAATGGAGAAGCTGCGTT+TGG | 0.475422 | 1.3:+3034113 | MS.gene26941:CDS |
| ATCCCTATAAATATAATCAA+AGG | 0.485270 | 1.3:-3034610 | None:intergenic |
| GAAGCAGGTGAAAGGTCTAA+TGG | 0.486719 | 1.3:+3034098 | MS.gene26941:CDS |
| TGAATCGGTGAACCCTAGAT+TGG | 0.487843 | 1.3:+3034251 | MS.gene26941:CDS |
| CGATCTAAAAGCTCAATTGA+AGG | 0.489088 | 1.3:-3034789 | None:intergenic |
| ATTGAATCAACACCTTGATC+CGG | 0.489958 | 1.3:-3034468 | None:intergenic |
| TAGTTGAGTTCTATGTCAAC+GGG | 0.490164 | 1.3:+3035057 | MS.gene26941:CDS |
| GGAAATTGCTATTTATAAAG+AGG | 0.490420 | 1.3:+3034287 | MS.gene26941:CDS |
| GTTGATTCAATTGCCAAGTC+GGG | 0.491275 | 1.3:+3034480 | MS.gene26941:CDS |
| ACGGAACAGTTTGTTGTGCT+TGG | 0.491386 | 1.3:+3034159 | MS.gene26941:CDS |
| AATGGAGAAGCTGCGTTTGG+CGG | 0.496977 | 1.3:+3034116 | MS.gene26941:CDS |
| TTGATGAACCTAAAATGGGT+TGG | 0.498626 | 1.3:+3034697 | MS.gene26941:CDS |
| TGCTCATACCATGAGAATAT+GGG | 0.499575 | 1.3:+3034728 | MS.gene26941:CDS |
| TCCTACTAATCAGAACCATC+GGG | 0.500121 | 1.3:-3035104 | None:intergenic |
| TCTAGGGTTCACCGATTCAT+CGG | 0.501111 | 1.3:-3034247 | None:intergenic |
| CTAGGGTTCACCGATTCATC+GGG | 0.503259 | 1.3:-3034246 | None:intergenic |
| AGAATATGGGTATATAACTC+TGG | 0.505845 | 1.3:+3034741 | MS.gene26941:CDS |
| TTGAGAGAGTTTCTGCAACT+AGG | 0.508202 | 1.3:+3034540 | MS.gene26941:CDS |
| TTCACCAATATCAAGAAAGT+TGG | 0.508424 | 1.3:+3034360 | MS.gene26941:CDS |
| GGCTTTCTAAAGAGAAAGCA+TGG | 0.511884 | 1.3:+3034823 | MS.gene26941:CDS |
| AGGTTACAGCGTTCTCCTCT+CGG | 0.515400 | 1.3:+3034560 | MS.gene26941:CDS |
| GTCTTTGATGAACCTAAAAT+GGG | 0.519326 | 1.3:+3034693 | MS.gene26941:CDS |
| ATCCTACTAATCAGAACCAT+CGG | 0.522896 | 1.3:-3035105 | None:intergenic |
| TATAGAAGAGACCCGGATCA+AGG | 0.525636 | 1.3:+3034456 | MS.gene26941:CDS |
| AGCATGATTCCCACCCGACT+TGG | 0.527468 | 1.3:-3034493 | None:intergenic |
| GCGTTTGGCGGAGCAAGGAA+AGG | 0.528394 | 1.3:+3034128 | MS.gene26941:CDS |
| TAGATTGGCAAAACTCTTGG+CGG | 0.530183 | 1.3:+3034266 | MS.gene26941:CDS |
| TCCGGGTCTCTTCTATAGAC+AGG | 0.531058 | 1.3:-3034450 | None:intergenic |
| GATTCAATTGCCAAGTCGGG+TGG | 0.535736 | 1.3:+3034483 | MS.gene26941:CDS |
| TTGAATCAACACCTTGATCC+GGG | 0.540173 | 1.3:-3034467 | None:intergenic |
| TGTTGATTCAATTGCCAAGT+CGG | 0.547442 | 1.3:+3034479 | MS.gene26941:CDS |
| AAGCTGCGTTTGGCGGAGCA+AGG | 0.554092 | 1.3:+3034123 | MS.gene26941:CDS |
| CCATCATAACCAGGATGTGA+AGG | 0.557644 | 1.3:-3034879 | None:intergenic |
| GTAGTTGAGTTCTATGTCAA+CGG | 0.558544 | 1.3:+3035056 | MS.gene26941:CDS |
| ATTTGATAAACAGCAATGGC+AGG | 0.559173 | 1.3:+3032677 | None:intergenic |
| TCTGGCTAACACTAATGTGT+TGG | 0.561756 | 1.3:+3034320 | MS.gene26941:CDS |
| AGAGCCTTGACAGTGCCAAA+AGG | 0.564867 | 1.3:-3034201 | None:intergenic |
| ACCATTCAATCACCGCATCT+CGG | 0.566295 | 1.3:+3032732 | MS.gene26941:CDS |
| GAGCTGAAGAAGCAGGTGAA+AGG | 0.566632 | 1.3:+3034090 | MS.gene26941:CDS |
| TATTTATAGGGATTCAGATG+TGG | 0.569522 | 1.3:+3034620 | MS.gene26941:CDS |
| TGTTGGAGATGTTACAGGTA+TGG | 0.571269 | 1.3:+3034337 | MS.gene26941:CDS |
| CGTTTGGCGGAGCAAGGAAA+GGG | 0.575655 | 1.3:+3034129 | MS.gene26941:CDS |
| GTTATATACCCATATTCTCA+TGG | 0.587662 | 1.3:-3034736 | None:intergenic |
| TAGTTAACATGTACAATCAC+AGG | 0.592948 | 1.3:-3035002 | None:intergenic |
| GCAAGGAAAGGGTCATGCTA+CGG | 0.593930 | 1.3:+3034140 | MS.gene26941:CDS |
| ATCATCCTGATAAACTTGCA+AGG | 0.604744 | 1.3:+3035024 | MS.gene26941:CDS |
| CATCATAACCAGGATGTGAA+GGG | 0.619342 | 1.3:-3034878 | None:intergenic |
| ATTCAATTGCCAAGTCGGGT+GGG | 0.620463 | 1.3:+3034484 | MS.gene26941:CDS |
| TCCTGTCTATAGAAGAGACC+CGG | 0.625262 | 1.3:+3034449 | MS.gene26941:CDS |
| GATTCATCGGGAATAACAGA+AGG | 0.626071 | 1.3:-3034234 | None:intergenic |
| GCGCTCGACAGTTTCCCCGA+TGG | 0.627821 | 1.3:+3035089 | MS.gene26941:CDS |
| GCATGAAGTCCATCATAACC+AGG | 0.631266 | 1.3:-3034888 | None:intergenic |
| CCCTATAAATATAATCAAAG+GGG | 0.636439 | 1.3:-3034608 | None:intergenic |
| TTTCTCTTTAGAAAGCCGAT+CGG | 0.638101 | 1.3:-3034817 | None:intergenic |
| TCATGCTGCAAAGAGAACAA+TGG | 0.639030 | 1.3:+3034905 | MS.gene26941:CDS |
| GATGTGGAGTCAATGTCAGA+TGG | 0.642589 | 1.3:+3034636 | MS.gene26941:CDS |
| GGCAACGGCGATCCGAGATG+CGG | 0.643444 | 1.3:-3032744 | None:intergenic |
| AACGCCGATGAAAACGGCAA+CGG | 0.643805 | 1.3:-3032759 | None:intergenic |
| CTTGGTGAGAAACACAAGGC+TGG | 0.654456 | 1.3:+3034177 | MS.gene26941:CDS |
| GCTTTCTAAAGAGAAAGCAT+GGG | 0.666613 | 1.3:+3034824 | MS.gene26941:CDS |
| GAGAATGGTCTGAGTTGATG+CGG | 0.680850 | 1.3:-3032834 | None:intergenic |
| AATGGTCTGAGTTGATGCGG+TGG | 0.700511 | 1.3:-3032831 | None:intergenic |
| TCAGACCATTCTCAGTCACA+AGG | 0.710546 | 1.3:+3032844 | MS.gene26941:CDS |
| ACACAATATCGACATCCGAG+AGG | 0.744525 | 1.3:-3034575 | None:intergenic |
| CCTACTAATCAGAACCATCG+GGG | 0.749180 | 1.3:-3035103 | None:intergenic |
| TGTGCTTGGTGAGAAACACA+AGG | 0.756567 | 1.3:+3034173 | MS.gene26941:CDS |
| GTGGAAATGAAGAAACCGTG+TGG | 0.802724 | 1.3:-3032812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTTTGAACAAAAATAG+AGG | - | chr1.3:3033312-3033331 | None:intergenic | 15.0% |
| !!! | AATAATGTGGATTATATTAA+TGG | + | chr1.3:3033647-3033666 | MS.gene26941:intron | 15.0% |
| !!! | AATGGATTTTATATACTTTA+GGG | + | chr1.3:3033665-3033684 | MS.gene26941:intron | 15.0% |
| !!! | ATAACTTGTTTATCAAAATA+TGG | + | chr1.3:3033240-3033259 | MS.gene26941:intron | 15.0% |
| !!! | TAATGGATTTTATATACTTT+AGG | + | chr1.3:3033664-3033683 | MS.gene26941:intron | 15.0% |
| !! | ATCCCTATAAATATAATCAA+AGG | - | chr1.3:3034613-3034632 | None:intergenic | 20.0% |
| !! | TCCCTATAAATATAATCAAA+GGG | - | chr1.3:3034612-3034631 | None:intergenic | 20.0% |
| !!! | ACAAATTTTCACATACATTA+GGG | - | chr1.3:3033606-3033625 | None:intergenic | 20.0% |
| ! | AAGTTAGCCATTCAATTTAT+GGG | + | chr1.3:3033347-3033366 | MS.gene26941:intron | 25.0% |
| ! | ACCCCTTTGATTATATTTAT+AGG | + | chr1.3:3034607-3034626 | MS.gene26941:CDS | 25.0% |
| ! | AGTTGGCATATCTAATTATT+TGG | + | chr1.3:3034377-3034396 | MS.gene26941:CDS | 25.0% |
| ! | ATACTTCAGAACTAAATTGA+TGG | - | chr1.3:3033540-3033559 | None:intergenic | 25.0% |
| ! | ATGTTATTAAGATGTGGTAA+GGG | - | chr1.3:3033725-3033744 | None:intergenic | 25.0% |
| ! | CCCCTTTGATTATATTTATA+GGG | + | chr1.3:3034608-3034627 | MS.gene26941:CDS | 25.0% |
| ! | CCCTATAAATATAATCAAAG+GGG | - | chr1.3:3034611-3034630 | None:intergenic | 25.0% |
| ! | GGTCTAATATTTACAAAACT+TGG | + | chr1.3:3033261-3033280 | MS.gene26941:intron | 25.0% |
| ! | TAATCCATGTTATTAAGATG+TGG | - | chr1.3:3033731-3033750 | None:intergenic | 25.0% |
| ! | TACTTTACCCATAAATTGAA+TGG | - | chr1.3:3033357-3033376 | None:intergenic | 25.0% |
| ! | TAGCAAATCATATAATGCAT+CGG | + | chr1.3:3033508-3033527 | MS.gene26941:intron | 25.0% |
| !! | CATCTTAATAACATGGATTA+AGG | + | chr1.3:3033731-3033750 | MS.gene26941:intron | 25.0% |
| !! | GACAAATTTTCACATACATT+AGG | - | chr1.3:3033607-3033626 | None:intergenic | 25.0% |
| !!! | GGAAATTGCTATTTATAAAG+AGG | + | chr1.3:3034287-3034306 | MS.gene26941:CDS | 25.0% |
| !!! | TAAGTTTTTTGAGACGATTT+GGG | + | chr1.3:3032925-3032944 | MS.gene26941:intron | 25.0% |
| AAACATACCCTTAAGTAGAA+AGG | - | chr1.3:3033031-3033050 | None:intergenic | 30.0% | |
| AGAATATGGGTATATAACTC+TGG | + | chr1.3:3034741-3034760 | MS.gene26941:CDS | 30.0% | |
| ATCCACATTATTAAGATGTC+AGG | - | chr1.3:3033639-3033658 | None:intergenic | 30.0% | |
| CATGTTAAGGATATCAAAAG+TGG | - | chr1.3:3033840-3033859 | None:intergenic | 30.0% | |
| CATGTTATTAAGATGTGGTA+AGG | - | chr1.3:3033726-3033745 | None:intergenic | 30.0% | |
| CTTACCACATCTTAATAACA+TGG | + | chr1.3:3033724-3033743 | MS.gene26941:intron | 30.0% | |
| GAACCTTACTGTTCATAAAA+AGG | - | chr1.3:3034938-3034957 | None:intergenic | 30.0% | |
| GAAGTTAGCCATTCAATTTA+TGG | + | chr1.3:3033346-3033365 | MS.gene26941:intron | 30.0% | |
| GTAACTGCTATAACATCATT+AGG | + | chr1.3:3033283-3033302 | MS.gene26941:intron | 30.0% | |
| GTCTTTGATGAACCTAAAAT+GGG | + | chr1.3:3034693-3034712 | MS.gene26941:CDS | 30.0% | |
| GTTATATACCCATATTCTCA+TGG | - | chr1.3:3034739-3034758 | None:intergenic | 30.0% | |
| TAGGGACTACTTATATACTT+AGG | + | chr1.3:3033683-3033702 | MS.gene26941:intron | 30.0% | |
| TAGTTAACATGTACAATCAC+AGG | - | chr1.3:3035005-3035024 | None:intergenic | 30.0% | |
| TATGCCAACTTTCTTGATAT+TGG | - | chr1.3:3034367-3034386 | None:intergenic | 30.0% | |
| TATTTATAGGGATTCAGATG+TGG | + | chr1.3:3034620-3034639 | MS.gene26941:CDS | 30.0% | |
| TCCACATTATTAAGATGTCA+GGG | - | chr1.3:3033638-3033657 | None:intergenic | 30.0% | |
| TGGATTAAGGAACTCAATAT+AGG | + | chr1.3:3033744-3033763 | MS.gene26941:intron | 30.0% | |
| TGTCTTTGATGAACCTAAAA+TGG | + | chr1.3:3034692-3034711 | MS.gene26941:CDS | 30.0% | |
| TTCACCAATATCAAGAAAGT+TGG | + | chr1.3:3034360-3034379 | MS.gene26941:CDS | 30.0% | |
| ! | GTACCTTTTTATGAACAGTA+AGG | + | chr1.3:3034932-3034951 | MS.gene26941:CDS | 30.0% |
| ! | TGTTATGTTGTGTCATTAGA+TGG | + | chr1.3:3033990-3034009 | MS.gene26941:intron | 30.0% |
| ! | TTTAGCTCCTTTCTACTTAA+GGG | + | chr1.3:3033021-3033040 | MS.gene26941:intron | 30.0% |
| !! | TAGTTCTGAACTAATCACAA+TGG | + | chr1.3:3033470-3033489 | MS.gene26941:intron | 30.0% |
| !!! | GTAAGTTTTTTGAGACGATT+TGG | + | chr1.3:3032924-3032943 | MS.gene26941:intron | 30.0% |
| !!! | TTTTAGCTCCTTTCTACTTA+AGG | + | chr1.3:3033020-3033039 | MS.gene26941:intron | 30.0% |
| AGCTCAATTGAAGGAATTGT+TGG | - | chr1.3:3034783-3034802 | None:intergenic | 35.0% | |
| ATCATCCTGATAAACTTGCA+AGG | + | chr1.3:3035024-3035043 | MS.gene26941:CDS | 35.0% | |
| ATGCTCATACCATGAGAATA+TGG | + | chr1.3:3034727-3034746 | MS.gene26941:CDS | 35.0% | |
| ATTGAATCAACACCTTGATC+CGG | - | chr1.3:3034471-3034490 | None:intergenic | 35.0% | |
| CATAGCAATCATACAGCTTA+TGG | + | chr1.3:3034660-3034679 | MS.gene26941:CDS | 35.0% | |
| CGATCTAAAAGCTCAATTGA+AGG | - | chr1.3:3034792-3034811 | None:intergenic | 35.0% | |
| GTAGTTGAGTTCTATGTCAA+CGG | + | chr1.3:3035056-3035075 | MS.gene26941:CDS | 35.0% | |
| TAATGTGTTGGAGATGTTAC+AGG | + | chr1.3:3034332-3034351 | MS.gene26941:CDS | 35.0% | |
| TAGTTGAGTTCTATGTCAAC+GGG | + | chr1.3:3035057-3035076 | MS.gene26941:CDS | 35.0% | |
| TCCCTGACATCTTAATAATG+TGG | + | chr1.3:3033634-3033653 | MS.gene26941:intron | 35.0% | |
| TGCTCATACCATGAGAATAT+GGG | + | chr1.3:3034728-3034747 | MS.gene26941:CDS | 35.0% | |
| TTCATCCTTGCAAGTTTATC+AGG | - | chr1.3:3035032-3035051 | None:intergenic | 35.0% | |
| TTCTGTTATTCCCGATGAAT+CGG | + | chr1.3:3034236-3034255 | MS.gene26941:CDS | 35.0% | |
| TTGATGAACCTAAAATGGGT+TGG | + | chr1.3:3034697-3034716 | MS.gene26941:CDS | 35.0% | |
| ! | GATTGAATGGTTTTTGTCTC+TGG | - | chr1.3:3032723-3032742 | None:intergenic | 35.0% |
| ! | GCTTTCTAAAGAGAAAGCAT+GGG | + | chr1.3:3034824-3034843 | MS.gene26941:CDS | 35.0% |
| ! | TGATGAACCTAAAATGGGTT+GGG | + | chr1.3:3034698-3034717 | MS.gene26941:CDS | 35.0% |
| ! | TGTGATTAGTTCAGAACTAG+TGG | - | chr1.3:3033469-3033488 | None:intergenic | 35.0% |
| ! | TTTCTCTTTAGAAAGCCGAT+CGG | - | chr1.3:3034820-3034839 | None:intergenic | 35.0% |
| !! | AAAGTGTCTGTTTTCAGCTT+AGG | + | chr1.3:3032972-3032991 | MS.gene26941:intron | 35.0% |
| !! | TGTTGATTCAATTGCCAAGT+CGG | + | chr1.3:3034479-3034498 | MS.gene26941:CDS | 35.0% |
| !! | TTCAACGCATTAACTTGTTC+TGG | - | chr1.3:3034036-3034055 | None:intergenic | 35.0% |
| AAGAAGAACGCCGATGAAAA+CGG | - | chr1.3:3032768-3032787 | None:intergenic | 40.0% | |
| ATCCTTAACATGTGCCCTTA+GGG | + | chr1.3:3033848-3033867 | MS.gene26941:intron | 40.0% | |
| CATCATAACCAGGATGTGAA+GGG | - | chr1.3:3034881-3034900 | None:intergenic | 40.0% | |
| GATTCATCGGGAATAACAGA+AGG | - | chr1.3:3034237-3034256 | None:intergenic | 40.0% | |
| TAGATTGGCAAAACTCTTGG+CGG | + | chr1.3:3034266-3034285 | MS.gene26941:CDS | 40.0% | |
| TATCCTTAACATGTGCCCTT+AGG | + | chr1.3:3033847-3033866 | MS.gene26941:intron | 40.0% | |
| TCATGCTGCAAAGAGAACAA+TGG | + | chr1.3:3034905-3034924 | MS.gene26941:CDS | 40.0% | |
| TCTGGCTAACACTAATGTGT+TGG | + | chr1.3:3034320-3034339 | MS.gene26941:CDS | 40.0% | |
| TGTTGGAGATGTTACAGGTA+TGG | + | chr1.3:3034337-3034356 | MS.gene26941:CDS | 40.0% | |
| TTGAATCAACACCTTGATCC+GGG | - | chr1.3:3034470-3034489 | None:intergenic | 40.0% | |
| TTGAGAGAGTTTCTGCAACT+AGG | + | chr1.3:3034540-3034559 | MS.gene26941:CDS | 40.0% | |
| ! | CCAAGAGTTTTGCCAATCTA+GGG | - | chr1.3:3034266-3034285 | None:intergenic | 40.0% |
| ! | GGCTTTCTAAAGAGAAAGCA+TGG | + | chr1.3:3034823-3034842 | MS.gene26941:CDS | 40.0% |
| ! | GTTGATTCAATTGCCAAGTC+GGG | + | chr1.3:3034480-3034499 | MS.gene26941:CDS | 40.0% |
| ! | TAAAGAGGTCGTTGTTGTTC+TGG | + | chr1.3:3034302-3034321 | MS.gene26941:CDS | 40.0% |
| ! | TATCTAGCCCAACCCATTTT+AGG | - | chr1.3:3034708-3034727 | None:intergenic | 40.0% |
| ! | TGTCTGTTTTCAGCTTAGGA+AGG | + | chr1.3:3032976-3032995 | MS.gene26941:intron | 40.0% |
| ! | TTCGCTTTCTTTTCACCACA+CGG | + | chr1.3:3032797-3032816 | MS.gene26941:CDS | 40.0% |
| ACACAATATCGACATCCGAG+AGG | - | chr1.3:3034578-3034597 | None:intergenic | 45.0% | |
| ACCAACCTTGTGACTGAGAA+TGG | - | chr1.3:3032852-3032871 | None:intergenic | 45.0% | |
| ACCATTCAATCACCGCATCT+CGG | + | chr1.3:3032732-3032751 | MS.gene26941:CDS | 45.0% | |
| ACCATTCTCAGTCACAAGGT+TGG | + | chr1.3:3032848-3032867 | MS.gene26941:intron | 45.0% | |
| ATTCAATTGCCAAGTCGGGT+GGG | + | chr1.3:3034484-3034503 | MS.gene26941:CDS | 45.0% | |
| CCATCATAACCAGGATGTGA+AGG | - | chr1.3:3034882-3034901 | None:intergenic | 45.0% | |
| CCCTAGATTGGCAAAACTCT+TGG | + | chr1.3:3034263-3034282 | MS.gene26941:CDS | 45.0% | |
| CCTTCACATCCTGGTTATGA+TGG | + | chr1.3:3034879-3034898 | MS.gene26941:CDS | 45.0% | |
| GAAGCAGGTGAAAGGTCTAA+TGG | + | chr1.3:3034098-3034117 | MS.gene26941:CDS | 45.0% | |
| GAATTCTGAGCTGAAGAAGC+AGG | + | chr1.3:3034083-3034102 | MS.gene26941:CDS | 45.0% | |
| GATGTGGAGTCAATGTCAGA+TGG | + | chr1.3:3034636-3034655 | MS.gene26941:CDS | 45.0% | |
| GCATGAAGTCCATCATAACC+AGG | - | chr1.3:3034891-3034910 | None:intergenic | 45.0% | |
| GTGGAAATGAAGAAACCGTG+TGG | - | chr1.3:3032815-3032834 | None:intergenic | 45.0% | |
| TATAGAAGAGACCCGGATCA+AGG | + | chr1.3:3034456-3034475 | MS.gene26941:CDS | 45.0% | |
| TCAGACCATTCTCAGTCACA+AGG | + | chr1.3:3032844-3032863 | MS.gene26941:CDS | 45.0% | |
| TCCTGTCTATAGAAGAGACC+CGG | + | chr1.3:3034449-3034468 | MS.gene26941:CDS | 45.0% | |
| TCTAATGGAGAAGCTGCGTT+TGG | + | chr1.3:3034113-3034132 | MS.gene26941:CDS | 45.0% | |
| TGAATCGGTGAACCCTAGAT+TGG | + | chr1.3:3034251-3034270 | MS.gene26941:CDS | 45.0% | |
| ! | CTCTTTTACCCTTCACATCC+TGG | + | chr1.3:3034870-3034889 | MS.gene26941:CDS | 45.0% |
| ! | CTGACATGTGTTTTGTGCGA+CGG | + | chr1.3:3033079-3033098 | MS.gene26941:intron | 45.0% |
| ! | GCCAAGAGTTTTGCCAATCT+AGG | - | chr1.3:3034267-3034286 | None:intergenic | 45.0% |
| ! | GTTTTCATCGGCGTTCTTCT+TGG | + | chr1.3:3032767-3032786 | MS.gene26941:CDS | 45.0% |
| ! | TGTGCTAACTTGTGCCCTAA+GGG | - | chr1.3:3033865-3033884 | None:intergenic | 45.0% |
| ! | TGTGCTTGGTGAGAAACACA+AGG | + | chr1.3:3034173-3034192 | MS.gene26941:CDS | 45.0% |
| ! | TTCTCAGTCACAAGGTTGGT+TGG | + | chr1.3:3032852-3032871 | MS.gene26941:intron | 45.0% |
| ! | TTGTGCTAACTTGTGCCCTA+AGG | - | chr1.3:3033866-3033885 | None:intergenic | 45.0% |
| ! | TTTTAGATCGCGTTGCCGAT+CGG | + | chr1.3:3034802-3034821 | MS.gene26941:CDS | 45.0% |
| !! | AAACACAAGGCTGGTCCTTT+TGG | + | chr1.3:3034186-3034205 | MS.gene26941:CDS | 45.0% |
| !! | ACGGAACAGTTTGTTGTGCT+TGG | + | chr1.3:3034159-3034178 | MS.gene26941:CDS | 45.0% |
| !! | GAGAATGGTCTGAGTTGATG+CGG | - | chr1.3:3032837-3032856 | None:intergenic | 45.0% |
| !! | TCTAGGGTTCACCGATTCAT+CGG | - | chr1.3:3034250-3034269 | None:intergenic | 45.0% |
| !! | TTATAATATTTATATACTTT+AGG | - | chr1.3:3033578-3033597 | None:intergenic | 5.0% |
| AACGCCGATGAAAACGGCAA+CGG | - | chr1.3:3032762-3032781 | None:intergenic | 50.0% | |
| AATGGAGAAGCTGCGTTTGG+CGG | + | chr1.3:3034116-3034135 | MS.gene26941:CDS | 50.0% | |
| AGAGCCTTGACAGTGCCAAA+AGG | - | chr1.3:3034204-3034223 | None:intergenic | 50.0% | |
| AGGTTACAGCGTTCTCCTCT+CGG | + | chr1.3:3034560-3034579 | MS.gene26941:CDS | 50.0% | |
| CTTGGTGAGAAACACAAGGC+TGG | + | chr1.3:3034177-3034196 | MS.gene26941:CDS | 50.0% | |
| GAGCTGAAGAAGCAGGTGAA+AGG | + | chr1.3:3034090-3034109 | MS.gene26941:CDS | 50.0% | |
| GATTCAATTGCCAAGTCGGG+TGG | + | chr1.3:3034483-3034502 | MS.gene26941:CDS | 50.0% | |
| GCAAGGAAAGGGTCATGCTA+CGG | + | chr1.3:3034140-3034159 | MS.gene26941:CDS | 50.0% | |
| TCCGAGATGCGGTGATTGAA+TGG | - | chr1.3:3032736-3032755 | None:intergenic | 50.0% | |
| TCCGGGTCTCTTCTATAGAC+AGG | - | chr1.3:3034453-3034472 | None:intergenic | 50.0% | |
| ! | TGCCCTAAGGGCACATGTTA+AGG | - | chr1.3:3033853-3033872 | None:intergenic | 50.0% |
| ! | TGGTCCTTTTGGCACTGTCA+AGG | + | chr1.3:3034197-3034216 | MS.gene26941:CDS | 50.0% |
| !! | AATGGTCTGAGTTGATGCGG+TGG | - | chr1.3:3032834-3032853 | None:intergenic | 50.0% |
| !! | CTAGGGTTCACCGATTCATC+GGG | - | chr1.3:3034249-3034268 | None:intergenic | 50.0% |
| !!! | ATCGCCGTTGCCGTTTTCAT+CGG | + | chr1.3:3032755-3032774 | MS.gene26941:CDS | 50.0% |
| AGCATGATTCCCACCCGACT+TGG | - | chr1.3:3034496-3034515 | None:intergenic | 55.0% | |
| CGTTTGGCGGAGCAAGGAAA+GGG | + | chr1.3:3034129-3034148 | MS.gene26941:CDS | 55.0% | |
| GGTGGGAATCATGCTGTCTC+TGG | + | chr1.3:3034501-3034520 | MS.gene26941:CDS | 55.0% | |
| AAGCTGCGTTTGGCGGAGCA+AGG | + | chr1.3:3034123-3034142 | MS.gene26941:CDS | 60.0% | |
| GCGTTTGGCGGAGCAAGGAA+AGG | + | chr1.3:3034128-3034147 | MS.gene26941:CDS | 60.0% | |
| GCGCTCGACAGTTTCCCCGA+TGG | + | chr1.3:3035089-3035108 | MS.gene26941:CDS | 65.0% | |
| GGCAACGGCGATCCGAGATG+CGG | - | chr1.3:3032747-3032766 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 3032692 | 3035121 | 3032692 | ID=MS.gene26941 |
| chr1.3 | mRNA | 3032692 | 3035121 | 3032692 | ID=MS.gene26941.t1;Parent=MS.gene26941 |
| chr1.3 | exon | 3032692 | 3032865 | 3032692 | ID=MS.gene26941.t1.exon1;Parent=MS.gene26941.t1 |
| chr1.3 | CDS | 3032692 | 3032865 | 3032692 | ID=cds.MS.gene26941.t1;Parent=MS.gene26941.t1 |
| chr1.3 | exon | 3034009 | 3035121 | 3034009 | ID=MS.gene26941.t1.exon2;Parent=MS.gene26941.t1 |
| chr1.3 | CDS | 3034009 | 3035121 | 3034009 | ID=cds.MS.gene26941.t1;Parent=MS.gene26941.t1 |
| Gene Sequence |
| Protein sequence |
