Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27647.t1 | XP_003623840.1 | 96.1 | 560 | 22 | 0 | 1 | 560 | 1 | 560 | 9.20E-233 | 816.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27647.t1 | O81902 | 30.8 | 172 | 109 | 5 | 344 | 511 | 118 | 283 | 8.7e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27647.t1 | A2Q5C9 | 96.1 | 560 | 22 | 0 | 1 | 560 | 1 | 560 | 6.6e-233 | 816.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050787 | MS.gene27647 | 0.814299 | 1.65E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27647 | MS.gene06253 | PPI |
| MS.gene27647 | MS.gene41659 | PPI |
| MS.gene27647 | MS.gene052564 | PPI |
| MS.gene27647 | MS.gene055531 | PPI |
| MS.gene27647 | MS.gene052565 | PPI |
| MS.gene27647 | MS.gene013180 | PPI |
| MS.gene27647 | MS.gene28664 | PPI |
| MS.gene27647 | MS.gene32213 | PPI |
| MS.gene27647 | MS.gene33842 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27647.t1 | MTR_7g076220 | 96.964 | 560 | 17 | 0 | 1 | 560 | 1 | 560 | 0.0 | 1092 |
| MS.gene27647.t1 | MTR_8g032570 | 77.305 | 564 | 121 | 3 | 1 | 560 | 1 | 561 | 0.0 | 878 |
| MS.gene27647.t1 | MTR_8g032570 | 77.305 | 564 | 121 | 3 | 1 | 560 | 24 | 584 | 0.0 | 877 |
| MS.gene27647.t1 | MTR_3g098730 | 34.630 | 540 | 323 | 11 | 34 | 559 | 30 | 553 | 6.39e-80 | 261 |
| MS.gene27647.t1 | MTR_4g091320 | 30.810 | 568 | 346 | 15 | 17 | 556 | 22 | 570 | 5.28e-63 | 217 |
| MS.gene27647.t1 | MTR_5g092900 | 44.167 | 120 | 32 | 3 | 371 | 490 | 32 | 116 | 9.70e-18 | 79.7 |
| MS.gene27647.t1 | MTR_1g069845 | 30.081 | 246 | 159 | 8 | 237 | 477 | 363 | 600 | 1.30e-15 | 80.5 |
| MS.gene27647.t1 | MTR_1g069845 | 30.081 | 246 | 159 | 8 | 237 | 477 | 480 | 717 | 1.58e-15 | 80.5 |
| MS.gene27647.t1 | MTR_1g069845 | 30.081 | 246 | 159 | 8 | 237 | 477 | 484 | 721 | 1.69e-15 | 80.1 |
| MS.gene27647.t1 | MTR_1g018180 | 24.351 | 308 | 190 | 6 | 156 | 461 | 61 | 327 | 1.07e-14 | 75.9 |
| MS.gene27647.t1 | MTR_4g007850 | 36.154 | 130 | 81 | 2 | 429 | 556 | 386 | 515 | 3.48e-14 | 75.5 |
| MS.gene27647.t1 | MTR_7g078330 | 28.958 | 259 | 176 | 6 | 167 | 420 | 378 | 633 | 4.95e-14 | 75.5 |
| MS.gene27647.t1 | MTR_7g078330 | 24.912 | 285 | 204 | 6 | 194 | 472 | 363 | 643 | 1.58e-11 | 67.4 |
| MS.gene27647.t1 | MTR_3g466220 | 25.982 | 331 | 195 | 7 | 141 | 465 | 535 | 821 | 2.46e-13 | 73.6 |
| MS.gene27647.t1 | MTR_3g466220 | 25.982 | 331 | 195 | 7 | 141 | 465 | 514 | 800 | 3.21e-13 | 73.2 |
| MS.gene27647.t1 | MTR_4g063800 | 24.062 | 320 | 195 | 5 | 139 | 455 | 336 | 610 | 4.58e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27647.t1 | AT2G45720 | 66.909 | 550 | 170 | 4 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene27647.t1 | AT2G45720 | 66.909 | 550 | 170 | 4 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene27647.t1 | AT2G45720 | 66.909 | 550 | 170 | 4 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene27647.t1 | AT2G45720 | 66.909 | 550 | 170 | 4 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene27647.t1 | AT2G45720 | 66.909 | 550 | 170 | 4 | 12 | 560 | 15 | 553 | 0.0 | 749 |
| MS.gene27647.t1 | AT1G01830 | 63.899 | 554 | 192 | 3 | 8 | 559 | 27 | 574 | 0.0 | 675 |
| MS.gene27647.t1 | AT1G01830 | 63.899 | 554 | 192 | 3 | 8 | 559 | 27 | 574 | 0.0 | 675 |
| MS.gene27647.t1 | AT1G01830 | 63.899 | 554 | 192 | 3 | 8 | 559 | 27 | 574 | 0.0 | 675 |
| MS.gene27647.t1 | AT5G50900 | 37.546 | 546 | 327 | 7 | 22 | 559 | 15 | 554 | 5.15e-105 | 327 |
| MS.gene27647.t1 | AT1G61350 | 30.909 | 550 | 337 | 15 | 35 | 556 | 32 | 566 | 5.20e-67 | 228 |
| MS.gene27647.t1 | AT2G05810 | 33.210 | 539 | 338 | 13 | 34 | 557 | 41 | 572 | 3.02e-51 | 185 |
| MS.gene27647.t1 | AT2G05810 | 33.210 | 539 | 338 | 13 | 34 | 557 | 41 | 572 | 3.02e-51 | 185 |
| MS.gene27647.t1 | AT3G54790 | 31.183 | 279 | 173 | 9 | 206 | 479 | 454 | 718 | 1.07e-18 | 90.5 |
| MS.gene27647.t1 | AT3G54790 | 31.183 | 279 | 173 | 9 | 206 | 479 | 490 | 754 | 2.14e-18 | 89.7 |
| MS.gene27647.t1 | AT3G54790 | 31.183 | 279 | 173 | 9 | 206 | 479 | 490 | 754 | 2.14e-18 | 89.7 |
| MS.gene27647.t1 | AT2G23140 | 27.103 | 321 | 187 | 7 | 152 | 469 | 539 | 815 | 4.63e-18 | 88.6 |
| MS.gene27647.t1 | AT2G23140 | 25.882 | 255 | 148 | 4 | 237 | 491 | 583 | 796 | 9.79e-11 | 65.1 |
| MS.gene27647.t1 | AT2G23140 | 27.103 | 321 | 187 | 7 | 152 | 469 | 539 | 815 | 4.63e-18 | 88.6 |
| MS.gene27647.t1 | AT2G23140 | 25.882 | 255 | 148 | 4 | 237 | 491 | 583 | 796 | 9.79e-11 | 65.1 |
| MS.gene27647.t1 | AT2G23140 | 27.103 | 321 | 187 | 7 | 152 | 469 | 542 | 818 | 5.20e-18 | 88.6 |
| MS.gene27647.t1 | AT2G23140 | 27.103 | 321 | 187 | 7 | 152 | 469 | 350 | 626 | 8.70e-18 | 87.4 |
| MS.gene27647.t1 | AT2G23140 | 27.103 | 321 | 187 | 7 | 152 | 469 | 350 | 626 | 8.70e-18 | 87.4 |
| MS.gene27647.t1 | AT2G28830 | 26.646 | 319 | 185 | 7 | 153 | 465 | 282 | 557 | 8.78e-14 | 74.7 |
| MS.gene27647.t1 | AT3G46510 | 26.780 | 295 | 204 | 5 | 148 | 435 | 346 | 635 | 2.86e-13 | 73.2 |
| MS.gene27647.t1 | AT5G58680 | 25.279 | 269 | 161 | 2 | 233 | 501 | 99 | 327 | 3.16e-11 | 65.5 |
| MS.gene27647.t1 | AT5G40140 | 25.989 | 177 | 131 | 0 | 159 | 335 | 233 | 409 | 3.64e-11 | 66.2 |
| MS.gene27647.t1 | AT3G01400 | 25.086 | 291 | 170 | 8 | 183 | 469 | 92 | 338 | 3.67e-11 | 65.5 |
Find 98 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAAAAGTGTGCCTAATT+TGG | 0.258642 | 7.2:+29591875 | MS.gene27647:CDS |
| GGTCGCAGCGTTACGGAATT+TGG | 0.265855 | 7.2:+29591572 | MS.gene27647:CDS |
| ACATTCTGCAGCATATTCTT+TGG | 0.269965 | 7.2:-29591439 | None:intergenic |
| TCAAGTAACTGAACCAAATT+AGG | 0.283449 | 7.2:-29591888 | None:intergenic |
| TCCTGAGGTGAGACAAGTTT+TGG | 0.294920 | 7.2:+29591356 | MS.gene27647:CDS |
| GGATGCATTAATCGGGAAAA+TGG | 0.303126 | 7.2:+29590750 | MS.gene27647:CDS |
| ATGATCTCATATGGTGCTAT+TGG | 0.322689 | 7.2:+29591993 | MS.gene27647:CDS |
| TTAACTTGTGGAATGTTGTT+AGG | 0.328884 | 7.2:+29591414 | MS.gene27647:CDS |
| GATAAGTTTGATAACATTGA+TGG | 0.335620 | 7.2:-29590586 | None:intergenic |
| GACACGGAAGACGCATTTAA+TGG | 0.337388 | 7.2:-29590835 | None:intergenic |
| TTTGCTTTATCAAGAGCAAT+AGG | 0.341641 | 7.2:-29590505 | None:intergenic |
| CTTATAAGACTTGTTGAATC+AGG | 0.347476 | 7.2:+29591156 | MS.gene27647:CDS |
| GGGAAATTAAGAAGTTTGTT+TGG | 0.358691 | 7.2:+29592083 | MS.gene27647:CDS |
| GTTAGGATTACTTCCTCGTT+TGG | 0.373107 | 7.2:+29591626 | MS.gene27647:CDS |
| TTGGTTCACGTGTTGAAATC+CGG | 0.379042 | 7.2:+29591645 | MS.gene27647:CDS |
| TATATGCTCGCTAGCCGAAT+CGG | 0.388263 | 7.2:+29591089 | MS.gene27647:CDS |
| AGAAGATGAAAAGAATGTTT+TGG | 0.395867 | 7.2:+29590981 | MS.gene27647:CDS |
| AGTGATCTGGATGCATTAAT+CGG | 0.402558 | 7.2:+29590742 | MS.gene27647:CDS |
| AAATATGCAGTTACATGCCT+TGG | 0.403305 | 7.2:+29591936 | MS.gene27647:CDS |
| TTAAATGCGTCTTCCGTGTC+AGG | 0.404129 | 7.2:+29590838 | MS.gene27647:CDS |
| TCTTTGCAAGGAGCAATTGC+AGG | 0.411441 | 7.2:+29590636 | MS.gene27647:CDS |
| TGCTCTTGATAAAGCAAAAG+AGG | 0.413222 | 7.2:+29590510 | MS.gene27647:CDS |
| GTCGGTTTCTGAGACAGCTT+TGG | 0.419694 | 7.2:+29591599 | MS.gene27647:CDS |
| TTGGTTGAGCTTTGTAGAAC+CGG | 0.423226 | 7.2:+29591279 | MS.gene27647:CDS |
| AGAAGCGAAGCACAAGGCTT+TGG | 0.430961 | 7.2:+29590936 | MS.gene27647:CDS |
| CAGGAGCAACATTGCTGCAC+TGG | 0.435703 | 7.2:+29591014 | MS.gene27647:CDS |
| ACTTCAGATGCAGAGTGATC+TGG | 0.435997 | 7.2:+29590729 | MS.gene27647:CDS |
| ATATACTTTCAACAGAAGAT+TGG | 0.437674 | 7.2:+29590458 | MS.gene27647:CDS |
| CAGCAGTCCACAACAACATA+AGG | 0.439287 | 7.2:+29590881 | MS.gene27647:CDS |
| TTGTATCGGAAGGCGGTGTC+AGG | 0.440530 | 7.2:+29591505 | MS.gene27647:CDS |
| TACATGAGAGATTGGAAAGA+GGG | 0.441315 | 7.2:+29592063 | MS.gene27647:CDS |
| ATATGCTCGCTAGCCGAATC+GGG | 0.444293 | 7.2:+29591090 | MS.gene27647:CDS |
| GAGACAGCTTTGGTTTCGTT+AGG | 0.458654 | 7.2:+29591609 | MS.gene27647:CDS |
| CGTGTTGAAATCCGGCTCCC+CGG | 0.480276 | 7.2:+29591653 | MS.gene27647:CDS |
| AGCAAGGATAAGAGAGAAAA+CGG | 0.480671 | 7.2:+29591059 | MS.gene27647:CDS |
| CTCAAAGAATGCTCTTTGCA+AGG | 0.480769 | 7.2:+29590624 | MS.gene27647:CDS |
| GCGTTGTCGAAGTCGCTTGA+AGG | 0.483797 | 7.2:+29590658 | MS.gene27647:CDS |
| AATCTGCGGTCGCAGCGTTA+CGG | 0.484753 | 7.2:+29591565 | MS.gene27647:CDS |
| ATGATCAATTTATTAACTTG+TGG | 0.487944 | 7.2:+29591402 | MS.gene27647:CDS |
| AAGAAGCTAATGATCTCATA+TGG | 0.492681 | 7.2:+29591984 | MS.gene27647:CDS |
| GTGTTGAAATCCGGCTCCCC+GGG | 0.500991 | 7.2:+29591654 | MS.gene27647:CDS |
| CAGCGTTACGGAATTTGGTC+GGG | 0.502557 | 7.2:+29591577 | MS.gene27647:CDS |
| ATCCTCGCAGCTACCCGATT+CGG | 0.503854 | 7.2:-29591103 | None:intergenic |
| TTTGAAGAAACTTACTGAGA+TGG | 0.503997 | 7.2:+29592019 | MS.gene27647:CDS |
| GGCTTTGGACAGTGTTGTTG+AGG | 0.508616 | 7.2:+29590951 | MS.gene27647:CDS |
| GATTTGAATTTACGAGATTG+TGG | 0.508625 | 7.2:+29590772 | MS.gene27647:CDS |
| ACCGCAGATTCTTGAGGAAG+TGG | 0.509135 | 7.2:-29591552 | None:intergenic |
| ACATGGTGGTGTTTGTCCGT+TGG | 0.509909 | 7.2:+29591260 | MS.gene27647:CDS |
| AACCGGTGATTCTGTTTCGC+AGG | 0.510018 | 7.2:+29591296 | MS.gene27647:CDS |
| GCAGCGTTACGGAATTTGGT+CGG | 0.511941 | 7.2:+29591576 | MS.gene27647:CDS |
| TTACTTGCGCGTCTTCAGAT+TGG | 0.514988 | 7.2:+29590907 | MS.gene27647:CDS |
| GATTCAACAAGTCTTATAAG+AGG | 0.524542 | 7.2:-29591153 | None:intergenic |
| AATCGGGTAGCTGCGAGGAT+TGG | 0.524824 | 7.2:+29591106 | MS.gene27647:CDS |
| AGAGCATTCTTTGAGAAACA+TGG | 0.525223 | 7.2:-29590616 | None:intergenic |
| TAATAGAAGAGAAGTTAAGA+AGG | 0.531726 | 7.2:+29591851 | MS.gene27647:CDS |
| ATCAAGATCATGGTGGAAGA+TGG | 0.531828 | 7.2:+29590424 | None:intergenic |
| TTACATGAGAGATTGGAAAG+AGG | 0.535319 | 7.2:+29592062 | MS.gene27647:CDS |
| GTAACTCCCTTATGTTGTTG+TGG | 0.537135 | 7.2:-29590888 | None:intergenic |
| TTGATCAGAACTGGTATGCT+CGG | 0.540578 | 7.2:+29590799 | MS.gene27647:CDS |
| GTTACAAAGGTTATCAATGT+CGG | 0.540691 | 7.2:+29591212 | MS.gene27647:CDS |
| GTGATCTGGATGCATTAATC+GGG | 0.542255 | 7.2:+29590743 | MS.gene27647:CDS |
| AGATTGGTTGTTACATGCAA+AGG | 0.544625 | 7.2:+29590474 | MS.gene27647:CDS |
| AAGTGCTGTAGGTAAAGAAA+AGG | 0.551122 | 7.2:+29591179 | MS.gene27647:CDS |
| GCCAAAACTTGTCTCACCTC+AGG | 0.556043 | 7.2:-29591357 | None:intergenic |
| TCTCCTTGTTAAGATGCTTG+AGG | 0.557290 | 7.2:+29591764 | MS.gene27647:CDS |
| TTTCTGTCGAGCTGCAAACT+CGG | 0.561081 | 7.2:-29591707 | None:intergenic |
| GTTGAATCAGGAAGTGCTGT+AGG | 0.569401 | 7.2:+29591168 | MS.gene27647:CDS |
| AGCAGTCCACAACAACATAA+GGG | 0.579862 | 7.2:+29590882 | MS.gene27647:CDS |
| GTTACGGAATTTGGTCGGGT+CGG | 0.582740 | 7.2:+29591581 | MS.gene27647:CDS |
| GAGGATTGGCTAGTTTCTGA+AGG | 0.584950 | 7.2:+29591120 | MS.gene27647:CDS |
| AACTTGTCTCACCTCAGGAA+CGG | 0.585582 | 7.2:-29591352 | None:intergenic |
| GCTGCGACCGCAGATTCTTG+AGG | 0.588276 | 7.2:-29591558 | None:intergenic |
| AGCCTGCGAAACAGAATCAC+CGG | 0.588909 | 7.2:-29591298 | None:intergenic |
| TCAACAAGTCTTATAAGAGG+TGG | 0.596638 | 7.2:-29591150 | None:intergenic |
| TGGCTCAAGAAGGGATTGTG+AGG | 0.596839 | 7.2:+29591376 | MS.gene27647:CDS |
| GAAACATCGCGTGAAATCGT+AGG | 0.597546 | 7.2:+29591237 | MS.gene27647:CDS |
| GAATATTTCAGCCGTTCCTG+AGG | 0.601450 | 7.2:+29591341 | MS.gene27647:CDS |
| TCAAGCATCTTAACAAGGAG+AGG | 0.608112 | 7.2:-29591762 | None:intergenic |
| AGTCTCTTAGCATATCTTGA+CGG | 0.608560 | 7.2:+29591528 | MS.gene27647:CDS |
| AGGCTGCAATATCGTTACAA+AGG | 0.609712 | 7.2:+29591199 | MS.gene27647:CDS |
| GGCTCAAGAAGGGATTGTGA+GGG | 0.611614 | 7.2:+29591377 | MS.gene27647:CDS |
| TTCTGTCGCAGAACCTGACA+CGG | 0.614968 | 7.2:-29590851 | None:intergenic |
| TCGGCAGATTGCTGACGCAG+CGG | 0.622419 | 7.2:-29591688 | None:intergenic |
| CGTGAAATCGTAGGACATGG+TGG | 0.626400 | 7.2:+29591246 | MS.gene27647:CDS |
| TTCAACACGTGAACCAAACG+AGG | 0.632931 | 7.2:-29591639 | None:intergenic |
| TACTTGAAGAAATCAATCCA+AGG | 0.635931 | 7.2:-29591953 | None:intergenic |
| TAGCCTCAAGCATCTTAACA+AGG | 0.636140 | 7.2:-29591767 | None:intergenic |
| TGTGTGAAGGAGAAGTATGA+AGG | 0.638552 | 7.2:+29590703 | MS.gene27647:CDS |
| TGCTTACAGCAACATCAGCA+AGG | 0.639711 | 7.2:+29591043 | MS.gene27647:CDS |
| AAAAGTGTTGTATCGGAAGG+CGG | 0.639832 | 7.2:+29591498 | MS.gene27647:CDS |
| TCCACTTCCTCAAGAATCTG+CGG | 0.640983 | 7.2:+29591551 | MS.gene27647:CDS |
| ATCAGCTGAATTGTGTGTGA+AGG | 0.643275 | 7.2:+29590690 | MS.gene27647:CDS |
| TCGCGTGAAATCGTAGGACA+TGG | 0.645677 | 7.2:+29591243 | MS.gene27647:CDS |
| TCACTTAGAAGCGAAGCACA+AGG | 0.647162 | 7.2:+29590930 | MS.gene27647:CDS |
| CTTACTGAGATGGATACTCC+AGG | 0.657141 | 7.2:+29592029 | MS.gene27647:CDS |
| AGCCGAATCGGGTAGCTGCG+AGG | 0.659711 | 7.2:+29591101 | MS.gene27647:CDS |
| GTTCTACAAAGCTCAACCAA+CGG | 0.683139 | 7.2:-29591276 | None:intergenic |
| CAGAACTGGTATGCTCGGCG+AGG | 0.694359 | 7.2:+29590804 | MS.gene27647:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATCAATTTATTAACTTG+TGG | + | chr7.2:29591402-29591421 | MS.gene27647:CDS | 20.0% |
| !!! | TATTTTTTTGCATTGTTTTG+AGG | - | chr7.2:29591921-29591940 | None:intergenic | 20.0% |
| !!! | TCTAAAAAAAAGTGTTGTAT+CGG | + | chr7.2:29591491-29591510 | MS.gene27647:CDS | 20.0% |
| !!! | TTAAAAGTTTTCCTACTAAA+TGG | + | chr7.2:29590533-29590552 | MS.gene27647:CDS | 20.0% |
| ! | ACAGAAATGAAAAAATTGGT+CGG | + | chr7.2:29591723-29591742 | MS.gene27647:CDS | 25.0% |
| ! | ATATACTTTCAACAGAAGAT+TGG | + | chr7.2:29590458-29590477 | MS.gene27647:CDS | 25.0% |
| ! | TAAAAAGTTACATGAGAGAT+TGG | + | chr7.2:29592055-29592074 | MS.gene27647:CDS | 25.0% |
| ! | TAATAGAAGAGAAGTTAAGA+AGG | + | chr7.2:29591851-29591870 | MS.gene27647:CDS | 25.0% |
| !! | AGAAGATGAAAAGAATGTTT+TGG | + | chr7.2:29590981-29591000 | MS.gene27647:CDS | 25.0% |
| !! | ATGATCATTTTCCATTTAGT+AGG | - | chr7.2:29590547-29590566 | None:intergenic | 25.0% |
| !! | GATAAGTTTGATAACATTGA+TGG | - | chr7.2:29590589-29590608 | None:intergenic | 25.0% |
| AAGAAGCTAATGATCTCATA+TGG | + | chr7.2:29591984-29592003 | MS.gene27647:CDS | 30.0% | |
| CTCGACAGAAATGAAAAAAT+TGG | + | chr7.2:29591719-29591738 | MS.gene27647:CDS | 30.0% | |
| GATTTGAATTTACGAGATTG+TGG | + | chr7.2:29590772-29590791 | MS.gene27647:CDS | 30.0% | |
| GTTACAAAGGTTATCAATGT+CGG | + | chr7.2:29591212-29591231 | MS.gene27647:CDS | 30.0% | |
| TACTTGAAGAAATCAATCCA+AGG | - | chr7.2:29591956-29591975 | None:intergenic | 30.0% | |
| TCAAGTAACTGAACCAAATT+AGG | - | chr7.2:29591891-29591910 | None:intergenic | 30.0% | |
| TTTGAAGAAACTTACTGAGA+TGG | + | chr7.2:29592019-29592038 | MS.gene27647:CDS | 30.0% | |
| TTTGCTTTATCAAGAGCAAT+AGG | - | chr7.2:29590508-29590527 | None:intergenic | 30.0% | |
| ! | GATTCAACAAGTCTTATAAG+AGG | - | chr7.2:29591156-29591175 | None:intergenic | 30.0% |
| ! | GGGAAATTAAGAAGTTTGTT+TGG | + | chr7.2:29592083-29592102 | MS.gene27647:CDS | 30.0% |
| ! | TGATAAAAGTGTGCCTAATT+TGG | + | chr7.2:29591875-29591894 | MS.gene27647:CDS | 30.0% |
| !! | AAAAAAAGTGTTGTATCGGA+AGG | + | chr7.2:29591495-29591514 | MS.gene27647:CDS | 30.0% |
| !! | CTTATAAGACTTGTTGAATC+AGG | + | chr7.2:29591156-29591175 | MS.gene27647:CDS | 30.0% |
| !! | TTAACTTGTGGAATGTTGTT+AGG | + | chr7.2:29591414-29591433 | MS.gene27647:CDS | 30.0% |
| AAATATGCAGTTACATGCCT+TGG | + | chr7.2:29591936-29591955 | MS.gene27647:CDS | 35.0% | |
| ACATTCTGCAGCATATTCTT+TGG | - | chr7.2:29591442-29591461 | None:intergenic | 35.0% | |
| AGCAAGGATAAGAGAGAAAA+CGG | + | chr7.2:29591059-29591078 | MS.gene27647:CDS | 35.0% | |
| AGTCTCTTAGCATATCTTGA+CGG | + | chr7.2:29591528-29591547 | MS.gene27647:CDS | 35.0% | |
| AGTGATCTGGATGCATTAAT+CGG | + | chr7.2:29590742-29590761 | MS.gene27647:CDS | 35.0% | |
| TACATGAGAGATTGGAAAGA+GGG | + | chr7.2:29592063-29592082 | MS.gene27647:CDS | 35.0% | |
| TGCTCTTGATAAAGCAAAAG+AGG | + | chr7.2:29590510-29590529 | MS.gene27647:CDS | 35.0% | |
| TTACATGAGAGATTGGAAAG+AGG | + | chr7.2:29592062-29592081 | MS.gene27647:CDS | 35.0% | |
| ! | AAGTGCTGTAGGTAAAGAAA+AGG | + | chr7.2:29591179-29591198 | MS.gene27647:CDS | 35.0% |
| ! | AGAGCATTCTTTGAGAAACA+TGG | - | chr7.2:29590619-29590638 | None:intergenic | 35.0% |
| ! | AGATTGGTTGTTACATGCAA+AGG | + | chr7.2:29590474-29590493 | MS.gene27647:CDS | 35.0% |
| ! | TCAACAAGTCTTATAAGAGG+TGG | - | chr7.2:29591153-29591172 | None:intergenic | 35.0% |
| !! | ATGATCTCATATGGTGCTAT+TGG | + | chr7.2:29591993-29592012 | MS.gene27647:CDS | 35.0% |
| !! | TCATGTAACTTTTTAGCACC+TGG | - | chr7.2:29592050-29592069 | None:intergenic | 35.0% |
| !!! | ATGTTTTGGCTGTTTTTAGC+AGG | + | chr7.2:29590995-29591014 | MS.gene27647:CDS | 35.0% |
| !!! | TTTGCATTGTTTTGAGGACT+AGG | - | chr7.2:29591915-29591934 | None:intergenic | 35.0% |
| AGCAGTCCACAACAACATAA+GGG | + | chr7.2:29590882-29590901 | MS.gene27647:CDS | 40.0% | |
| AGGCTGCAATATCGTTACAA+AGG | + | chr7.2:29591199-29591218 | MS.gene27647:CDS | 40.0% | |
| ATCAGCTGAATTGTGTGTGA+AGG | + | chr7.2:29590690-29590709 | MS.gene27647:CDS | 40.0% | |
| CTCAAAGAATGCTCTTTGCA+AGG | + | chr7.2:29590624-29590643 | MS.gene27647:CDS | 40.0% | |
| GGATGCATTAATCGGGAAAA+TGG | + | chr7.2:29590750-29590769 | MS.gene27647:CDS | 40.0% | |
| GTAACTCCCTTATGTTGTTG+TGG | - | chr7.2:29590891-29590910 | None:intergenic | 40.0% | |
| GTGATCTGGATGCATTAATC+GGG | + | chr7.2:29590743-29590762 | MS.gene27647:CDS | 40.0% | |
| GTTAGGATTACTTCCTCGTT+TGG | + | chr7.2:29591626-29591645 | MS.gene27647:CDS | 40.0% | |
| GTTCTACAAAGCTCAACCAA+CGG | - | chr7.2:29591279-29591298 | None:intergenic | 40.0% | |
| TAGCCTCAAGCATCTTAACA+AGG | - | chr7.2:29591770-29591789 | None:intergenic | 40.0% | |
| TCAAGCATCTTAACAAGGAG+AGG | - | chr7.2:29591765-29591784 | None:intergenic | 40.0% | |
| TCTCCTTGTTAAGATGCTTG+AGG | + | chr7.2:29591764-29591783 | MS.gene27647:CDS | 40.0% | |
| TTGATCAGAACTGGTATGCT+CGG | + | chr7.2:29590799-29590818 | MS.gene27647:CDS | 40.0% | |
| TTGGTTCACGTGTTGAAATC+CGG | + | chr7.2:29591645-29591664 | MS.gene27647:CDS | 40.0% | |
| ! | TGTGGACTTTTGATCAGAAC+TGG | + | chr7.2:29590790-29590809 | MS.gene27647:CDS | 40.0% |
| ! | TGTGTGAAGGAGAAGTATGA+AGG | + | chr7.2:29590703-29590722 | MS.gene27647:CDS | 40.0% |
| ! | TTGGTTGAGCTTTGTAGAAC+CGG | + | chr7.2:29591279-29591298 | MS.gene27647:CDS | 40.0% |
| !! | AAAAGTGTTGTATCGGAAGG+CGG | + | chr7.2:29591498-29591517 | MS.gene27647:CDS | 40.0% |
| !!! | AGACAAGTTTTGGCTCAAGA+AGG | + | chr7.2:29591366-29591385 | MS.gene27647:CDS | 40.0% |
| !!! | GACAAGTTTTGGCTCAAGAA+GGG | + | chr7.2:29591367-29591386 | MS.gene27647:CDS | 40.0% |
| AAAAAATTGGTCGGCGAAGC+TGG | + | chr7.2:29591732-29591751 | MS.gene27647:CDS | 45.0% | |
| AACTTGTCTCACCTCAGGAA+CGG | - | chr7.2:29591355-29591374 | None:intergenic | 45.0% | |
| ACTTCAGATGCAGAGTGATC+TGG | + | chr7.2:29590729-29590748 | MS.gene27647:CDS | 45.0% | |
| CAGCAGTCCACAACAACATA+AGG | + | chr7.2:29590881-29590900 | MS.gene27647:CDS | 45.0% | |
| CTTACTGAGATGGATACTCC+AGG | + | chr7.2:29592029-29592048 | MS.gene27647:CDS | 45.0% | |
| GAAACATCGCGTGAAATCGT+AGG | + | chr7.2:29591237-29591256 | MS.gene27647:CDS | 45.0% | |
| GAATATTTCAGCCGTTCCTG+AGG | + | chr7.2:29591341-29591360 | MS.gene27647:CDS | 45.0% | |
| GACACGGAAGACGCATTTAA+TGG | - | chr7.2:29590838-29590857 | None:intergenic | 45.0% | |
| TATATGCTCGCTAGCCGAAT+CGG | + | chr7.2:29591089-29591108 | MS.gene27647:CDS | 45.0% | |
| TCACTTAGAAGCGAAGCACA+AGG | + | chr7.2:29590930-29590949 | MS.gene27647:CDS | 45.0% | |
| TCCACTTCCTCAAGAATCTG+CGG | + | chr7.2:29591551-29591570 | MS.gene27647:CDS | 45.0% | |
| TCTTTGCAAGGAGCAATTGC+AGG | + | chr7.2:29590636-29590655 | MS.gene27647:CDS | 45.0% | |
| TGCTTACAGCAACATCAGCA+AGG | + | chr7.2:29591043-29591062 | MS.gene27647:CDS | 45.0% | |
| TTAAATGCGTCTTCCGTGTC+AGG | + | chr7.2:29590838-29590857 | MS.gene27647:CDS | 45.0% | |
| TTACTTGCGCGTCTTCAGAT+TGG | + | chr7.2:29590907-29590926 | MS.gene27647:CDS | 45.0% | |
| TTCAACACGTGAACCAAACG+AGG | - | chr7.2:29591642-29591661 | None:intergenic | 45.0% | |
| TTTCTGTCGAGCTGCAAACT+CGG | - | chr7.2:29591710-29591729 | None:intergenic | 45.0% | |
| ! | GAGACAGCTTTGGTTTCGTT+AGG | + | chr7.2:29591609-29591628 | MS.gene27647:CDS | 45.0% |
| ! | TCCTGAGGTGAGACAAGTTT+TGG | + | chr7.2:29591356-29591375 | MS.gene27647:CDS | 45.0% |
| !! | GAGGATTGGCTAGTTTCTGA+AGG | + | chr7.2:29591120-29591139 | MS.gene27647:CDS | 45.0% |
| !! | GTTGAATCAGGAAGTGCTGT+AGG | + | chr7.2:29591168-29591187 | MS.gene27647:CDS | 45.0% |
| AACCGGTGATTCTGTTTCGC+AGG | + | chr7.2:29591296-29591315 | MS.gene27647:CDS | 50.0% | |
| ACCGCAGATTCTTGAGGAAG+TGG | - | chr7.2:29591555-29591574 | None:intergenic | 50.0% | |
| AGAAGCGAAGCACAAGGCTT+TGG | + | chr7.2:29590936-29590955 | MS.gene27647:CDS | 50.0% | |
| AGCCTGCGAAACAGAATCAC+CGG | - | chr7.2:29591301-29591320 | None:intergenic | 50.0% | |
| ATATGCTCGCTAGCCGAATC+GGG | + | chr7.2:29591090-29591109 | MS.gene27647:CDS | 50.0% | |
| CAGCGTTACGGAATTTGGTC+GGG | + | chr7.2:29591577-29591596 | MS.gene27647:CDS | 50.0% | |
| CGTGAAATCGTAGGACATGG+TGG | + | chr7.2:29591246-29591265 | MS.gene27647:CDS | 50.0% | |
| GCAGCGTTACGGAATTTGGT+CGG | + | chr7.2:29591576-29591595 | MS.gene27647:CDS | 50.0% | |
| GCCAAAACTTGTCTCACCTC+AGG | - | chr7.2:29591360-29591379 | None:intergenic | 50.0% | |
| GGCTCAAGAAGGGATTGTGA+GGG | + | chr7.2:29591377-29591396 | MS.gene27647:CDS | 50.0% | |
| GTTACGGAATTTGGTCGGGT+CGG | + | chr7.2:29591581-29591600 | MS.gene27647:CDS | 50.0% | |
| TCGCGTGAAATCGTAGGACA+TGG | + | chr7.2:29591243-29591262 | MS.gene27647:CDS | 50.0% | |
| TGGCTCAAGAAGGGATTGTG+AGG | + | chr7.2:29591376-29591395 | MS.gene27647:CDS | 50.0% | |
| TTCTGTCGCAGAACCTGACA+CGG | - | chr7.2:29590854-29590873 | None:intergenic | 50.0% | |
| ! | ACATGGTGGTGTTTGTCCGT+TGG | + | chr7.2:29591260-29591279 | MS.gene27647:CDS | 50.0% |
| !! | GGCTTTGGACAGTGTTGTTG+AGG | + | chr7.2:29590951-29590970 | MS.gene27647:CDS | 50.0% |
| !! | GTCGGTTTCTGAGACAGCTT+TGG | + | chr7.2:29591599-29591618 | MS.gene27647:CDS | 50.0% |
| AATCGGGTAGCTGCGAGGAT+TGG | + | chr7.2:29591106-29591125 | MS.gene27647:CDS | 55.0% | |
| AATCTGCGGTCGCAGCGTTA+CGG | + | chr7.2:29591565-29591584 | MS.gene27647:CDS | 55.0% | |
| ATCCTCGCAGCTACCCGATT+CGG | - | chr7.2:29591106-29591125 | None:intergenic | 55.0% | |
| CAGGAGCAACATTGCTGCAC+TGG | + | chr7.2:29591014-29591033 | MS.gene27647:CDS | 55.0% | |
| GCGTTGTCGAAGTCGCTTGA+AGG | + | chr7.2:29590658-29590677 | MS.gene27647:CDS | 55.0% | |
| GGTCGCAGCGTTACGGAATT+TGG | + | chr7.2:29591572-29591591 | MS.gene27647:CDS | 55.0% | |
| TTGTATCGGAAGGCGGTGTC+AGG | + | chr7.2:29591505-29591524 | MS.gene27647:CDS | 55.0% | |
| CAGAACTGGTATGCTCGGCG+AGG | + | chr7.2:29590804-29590823 | MS.gene27647:CDS | 60.0% | |
| CGTGTTGAAATCCGGCTCCC+CGG | + | chr7.2:29591653-29591672 | MS.gene27647:CDS | 60.0% | |
| GCTGCGACCGCAGATTCTTG+AGG | - | chr7.2:29591561-29591580 | None:intergenic | 60.0% | |
| GTGTTGAAATCCGGCTCCCC+GGG | + | chr7.2:29591654-29591673 | MS.gene27647:CDS | 60.0% | |
| TCGGCAGATTGCTGACGCAG+CGG | - | chr7.2:29591691-29591710 | None:intergenic | 60.0% | |
| ! | AGCGGCATTTTGTGCTCCCG+GGG | - | chr7.2:29591673-29591692 | None:intergenic | 60.0% |
| ! | ATTTTGTGCTCCCGGGGAGC+CGG | - | chr7.2:29591667-29591686 | None:intergenic | 60.0% |
| ! | CAGCGGCATTTTGTGCTCCC+GGG | - | chr7.2:29591674-29591693 | None:intergenic | 60.0% |
| ! | GCAGCGGCATTTTGTGCTCC+CGG | - | chr7.2:29591675-29591694 | None:intergenic | 60.0% |
| AGCCGAATCGGGTAGCTGCG+AGG | + | chr7.2:29591101-29591120 | MS.gene27647:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 29590433 | 29592115 | 29590433 | ID=MS.gene27647 |
| chr7.2 | mRNA | 29590433 | 29592115 | 29590433 | ID=MS.gene27647.t1;Parent=MS.gene27647 |
| chr7.2 | exon | 29590433 | 29592115 | 29590433 | ID=MS.gene27647.t1.exon1;Parent=MS.gene27647.t1 |
| chr7.2 | CDS | 29590433 | 29592115 | 29590433 | ID=cds.MS.gene27647.t1;Parent=MS.gene27647.t1 |
| Gene Sequence |
| Protein sequence |
