Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28510.t1 | XP_003629527.2 | 100 | 136 | 0 | 0 | 1 | 136 | 487 | 622 | 1.70E-71 | 278.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28510.t1 | Q9SW80 | 89.9 | 138 | 12 | 1 | 1 | 136 | 407 | 544 | 4.8e-67 | 255.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28510.t1 | G7LFL6 | 100.0 | 136 | 0 | 0 | 1 | 136 | 487 | 622 | 1.2e-71 | 278.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene28510 | 0.809784 | 1.59E-50 | -1.69E-46 |
| MS.gene049151 | MS.gene28510 | 0.813212 | 2.87E-51 | -1.69E-46 |
| MS.gene049153 | MS.gene28510 | 0.809166 | 2.16E-50 | -1.69E-46 |
| MS.gene049233 | MS.gene28510 | 0.822247 | 2.62E-53 | -1.69E-46 |
| MS.gene049260 | MS.gene28510 | 0.805964 | 1.04E-49 | -1.69E-46 |
| MS.gene049758 | MS.gene28510 | 0.809587 | 1.76E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene28510 | 0.840666 | 7.58E-58 | -1.69E-46 |
| MS.gene050227 | MS.gene28510 | 0.829985 | 3.79E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene28510 | 0.823407 | 1.41E-53 | -1.69E-46 |
| MS.gene050442 | MS.gene28510 | 0.802336 | 5.89E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene28510 | -0.805641 | 1.21E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene28510 | 0.809132 | 2.20E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene28510 | 0.819842 | 9.39E-53 | -1.69E-46 |
| MS.gene050763 | MS.gene28510 | 0.822709 | 2.05E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene28510 | 0.826488 | 2.64E-54 | -1.69E-46 |
| MS.gene053836 | MS.gene28510 | 0.82613 | 3.21E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene28510 | 0.82564 | 4.20E-54 | -1.69E-46 |
| MS.gene054930 | MS.gene28510 | 0.838941 | 2.13E-57 | -1.69E-46 |
| MS.gene056875 | MS.gene28510 | 0.811764 | 5.95E-51 | -1.69E-46 |
| MS.gene057469 | MS.gene28510 | 0.834633 | 2.68E-56 | -1.69E-46 |
| MS.gene05761 | MS.gene28510 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene059128 | MS.gene28510 | 0.812686 | 3.74E-51 | -1.69E-46 |
| MS.gene05984 | MS.gene28510 | 0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene060480 | MS.gene28510 | 0.811609 | 6.43E-51 | -1.69E-46 |
| MS.gene060683 | MS.gene28510 | 0.817372 | 3.41E-52 | -1.69E-46 |
| MS.gene060685 | MS.gene28510 | 0.806014 | 1.01E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene28510 | 0.816273 | 6.02E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene28510 | 0.802504 | 5.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28510.t1 | MTR_8g078480 | 100.000 | 136 | 0 | 0 | 1 | 136 | 487 | 622 | 3.27e-95 | 292 |
| MS.gene28510.t1 | MTR_5g018860 | 90.441 | 136 | 12 | 1 | 1 | 136 | 436 | 570 | 5.10e-86 | 266 |
| MS.gene28510.t1 | MTR_8g098815 | 71.111 | 135 | 38 | 1 | 2 | 136 | 282 | 415 | 1.42e-61 | 199 |
| MS.gene28510.t1 | MTR_1g057790 | 60.294 | 136 | 50 | 1 | 1 | 136 | 261 | 392 | 9.29e-53 | 176 |
| MS.gene28510.t1 | MTR_1g023050 | 61.029 | 136 | 42 | 2 | 1 | 136 | 278 | 402 | 9.80e-53 | 176 |
| MS.gene28510.t1 | MTR_3g112300 | 57.353 | 136 | 47 | 2 | 1 | 136 | 267 | 391 | 2.57e-49 | 162 |
| MS.gene28510.t1 | MTR_3g112300 | 57.353 | 136 | 47 | 2 | 1 | 136 | 267 | 391 | 8.16e-48 | 160 |
| MS.gene28510.t1 | MTR_3g112300 | 57.353 | 136 | 47 | 2 | 1 | 136 | 267 | 391 | 1.17e-47 | 161 |
| MS.gene28510.t1 | MTR_7g106320 | 60.294 | 136 | 50 | 1 | 1 | 136 | 273 | 404 | 5.74e-45 | 155 |
| MS.gene28510.t1 | MTR_4g051532 | 56.296 | 135 | 55 | 1 | 2 | 136 | 318 | 448 | 2.02e-41 | 145 |
| MS.gene28510.t1 | MTR_2g095050 | 48.980 | 147 | 61 | 3 | 1 | 136 | 342 | 485 | 2.95e-41 | 144 |
| MS.gene28510.t1 | MTR_4g019450 | 55.474 | 137 | 50 | 4 | 2 | 136 | 279 | 406 | 1.64e-39 | 139 |
| MS.gene28510.t1 | MTR_3g112300 | 55.172 | 116 | 41 | 2 | 1 | 116 | 267 | 371 | 9.24e-38 | 131 |
| MS.gene28510.t1 | MTR_7g065050 | 51.471 | 136 | 57 | 4 | 2 | 136 | 224 | 351 | 1.55e-37 | 133 |
| MS.gene28510.t1 | MTR_3g112290 | 51.079 | 139 | 59 | 4 | 2 | 136 | 261 | 394 | 2.88e-36 | 129 |
| MS.gene28510.t1 | MTR_1g016490 | 40.336 | 119 | 62 | 3 | 18 | 136 | 361 | 470 | 1.06e-21 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28510.t1 | AT4G36870 | 89.855 | 138 | 12 | 1 | 1 | 136 | 407 | 544 | 1.20e-87 | 265 |
| MS.gene28510.t1 | AT4G36870 | 89.855 | 138 | 12 | 1 | 1 | 136 | 407 | 544 | 2.66e-87 | 265 |
| MS.gene28510.t1 | AT4G36870 | 89.855 | 138 | 12 | 1 | 1 | 136 | 407 | 544 | 6.30e-86 | 265 |
| MS.gene28510.t1 | AT4G36870 | 89.855 | 138 | 12 | 1 | 1 | 136 | 407 | 544 | 6.30e-86 | 265 |
| MS.gene28510.t1 | AT2G23760 | 87.681 | 138 | 15 | 1 | 1 | 136 | 333 | 470 | 1.49e-83 | 256 |
| MS.gene28510.t1 | AT2G23760 | 87.681 | 138 | 15 | 1 | 1 | 136 | 333 | 470 | 1.49e-83 | 256 |
| MS.gene28510.t1 | AT2G23760 | 87.681 | 138 | 15 | 1 | 1 | 136 | 333 | 470 | 1.49e-83 | 256 |
| MS.gene28510.t1 | AT2G23760 | 63.684 | 190 | 15 | 2 | 1 | 136 | 333 | 522 | 1.07e-73 | 232 |
| MS.gene28510.t1 | AT5G41410 | 62.016 | 129 | 47 | 1 | 10 | 136 | 309 | 437 | 1.05e-52 | 175 |
| MS.gene28510.t1 | AT2G35940 | 58.273 | 139 | 53 | 2 | 1 | 136 | 295 | 431 | 3.24e-51 | 172 |
| MS.gene28510.t1 | AT2G35940 | 58.273 | 139 | 53 | 2 | 1 | 136 | 295 | 431 | 3.24e-51 | 172 |
| MS.gene28510.t1 | AT2G35940 | 58.273 | 139 | 53 | 2 | 1 | 136 | 295 | 431 | 3.24e-51 | 172 |
| MS.gene28510.t1 | AT2G16400 | 58.394 | 137 | 53 | 2 | 1 | 136 | 198 | 331 | 2.36e-49 | 164 |
| MS.gene28510.t1 | AT4G34610 | 60.294 | 136 | 48 | 2 | 1 | 136 | 231 | 360 | 9.57e-49 | 163 |
| MS.gene28510.t1 | AT4G34610 | 60.294 | 136 | 48 | 2 | 1 | 136 | 231 | 360 | 9.57e-49 | 163 |
| MS.gene28510.t1 | AT4G34610 | 60.294 | 136 | 48 | 2 | 1 | 136 | 231 | 360 | 9.57e-49 | 163 |
| MS.gene28510.t1 | AT4G34610 | 60.294 | 136 | 48 | 2 | 1 | 136 | 231 | 360 | 9.57e-49 | 163 |
| MS.gene28510.t1 | AT1G75410 | 57.037 | 135 | 55 | 1 | 2 | 136 | 261 | 392 | 3.63e-48 | 159 |
| MS.gene28510.t1 | AT1G75410 | 57.037 | 135 | 55 | 1 | 2 | 136 | 261 | 392 | 3.66e-47 | 159 |
| MS.gene28510.t1 | AT1G75410 | 57.037 | 135 | 55 | 1 | 2 | 136 | 261 | 392 | 3.66e-47 | 159 |
| MS.gene28510.t1 | AT1G19700 | 56.296 | 135 | 59 | 0 | 2 | 136 | 263 | 397 | 4.07e-47 | 159 |
| MS.gene28510.t1 | AT1G19700 | 56.296 | 135 | 59 | 0 | 2 | 136 | 263 | 397 | 4.07e-47 | 159 |
| MS.gene28510.t1 | AT1G19700 | 56.296 | 135 | 59 | 0 | 2 | 136 | 263 | 397 | 4.07e-47 | 159 |
| MS.gene28510.t1 | AT1G19700 | 56.296 | 135 | 59 | 0 | 2 | 136 | 263 | 397 | 4.07e-47 | 159 |
| MS.gene28510.t1 | AT1G19700 | 56.296 | 135 | 59 | 0 | 2 | 136 | 263 | 397 | 4.07e-47 | 159 |
| MS.gene28510.t1 | AT5G02030 | 48.571 | 140 | 67 | 3 | 2 | 136 | 255 | 394 | 7.64e-35 | 126 |
| MS.gene28510.t1 | AT2G27220 | 41.481 | 135 | 59 | 2 | 2 | 136 | 160 | 274 | 4.93e-32 | 117 |
| MS.gene28510.t1 | AT2G27220 | 41.481 | 135 | 59 | 2 | 2 | 136 | 160 | 274 | 4.93e-32 | 117 |
| MS.gene28510.t1 | AT2G27220 | 41.481 | 135 | 59 | 2 | 2 | 136 | 178 | 292 | 6.35e-32 | 117 |
| MS.gene28510.t1 | AT1G75430 | 42.958 | 142 | 68 | 5 | 2 | 136 | 113 | 248 | 4.57e-30 | 110 |
| MS.gene28510.t1 | AT2G27990 | 43.704 | 135 | 64 | 2 | 2 | 136 | 348 | 470 | 7.22e-30 | 113 |
| MS.gene28510.t1 | AT4G32980 | 55.556 | 63 | 22 | 1 | 80 | 136 | 356 | 418 | 8.10e-20 | 84.3 |
| MS.gene28510.t1 | AT4G32980 | 55.556 | 63 | 22 | 1 | 80 | 136 | 356 | 418 | 8.10e-20 | 84.3 |
| MS.gene28510.t1 | AT1G75430 | 39.344 | 122 | 61 | 5 | 2 | 116 | 113 | 228 | 1.66e-19 | 82.0 |
| MS.gene28510.t1 | AT2G27990 | 38.261 | 115 | 59 | 2 | 2 | 116 | 348 | 450 | 2.06e-18 | 80.5 |
Find 32 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCCTTTAAACAACGAAAA+TGG | 0.277545 | 8.4:+28090790 | None:intergenic |
| GAGGGGACGAACCTGATTTC+TGG | 0.280748 | 8.4:+28088448 | None:intergenic |
| TTTGACCTAGTAATGGGATT+TGG | 0.310831 | 8.4:-28090858 | MS.gene28510:CDS |
| AAACATAGTTGTGAGTTATT+AGG | 0.327586 | 8.4:-28090750 | MS.gene28510:CDS |
| AAGTCTTGGTGTCTCTCCTT+TGG | 0.365611 | 8.4:+28090695 | None:intergenic |
| AACTCATTTGACCTAGTAAT+GGG | 0.377738 | 8.4:-28090864 | MS.gene28510:CDS |
| GACTGGCCTTTCCAGAAATC+AGG | 0.378906 | 8.4:-28088459 | None:intergenic |
| AAAGATGGTGTGGGGACCTC+AGG | 0.438346 | 8.4:-28090723 | MS.gene28510:CDS |
| CTGCTCCAAATCCCATTACT+AGG | 0.477920 | 8.4:+28090853 | None:intergenic |
| TGTTCAAGAAGTTTAAGTCT+TGG | 0.486979 | 8.4:+28090681 | None:intergenic |
| TCAGATGGGGATGATGGAAC+AGG | 0.498142 | 8.4:-28090631 | MS.gene28510:CDS |
| CATCTCTTAGCAAGACAGAC+TGG | 0.501238 | 8.4:-28088476 | MS.gene28510:CDS |
| CAGAGAGCGTTTCATCAGAT+GGG | 0.502418 | 8.4:-28090645 | MS.gene28510:CDS |
| TTCTGAGCTAGTGCCGTGTA+TGG | 0.506424 | 8.4:+28090825 | None:intergenic |
| GCAGAGAGCGTTTCATCAGA+TGG | 0.518676 | 8.4:-28090646 | MS.gene28510:CDS |
| GAACTCATTTGACCTAGTAA+TGG | 0.518871 | 8.4:-28090865 | MS.gene28510:CDS |
| ATTAGGAGAGAAAGATGGTG+TGG | 0.521359 | 8.4:-28090733 | MS.gene28510:CDS |
| GGATGATGGAACAGGAAGCT+TGG | 0.521906 | 8.4:-28090623 | MS.gene28510:CDS |
| TTAGGAGAGAAAGATGGTGT+GGG | 0.523003 | 8.4:-28090732 | MS.gene28510:CDS |
| GTTTCATCAGATGGGGATGA+TGG | 0.541352 | 8.4:-28090637 | MS.gene28510:CDS |
| CTCTCCTTTGGTCAAACCTG+AGG | 0.552410 | 8.4:+28090707 | None:intergenic |
| GACGAACCTGATTTCTGGAA+AGG | 0.569168 | 8.4:+28088453 | None:intergenic |
| GAGTTATTAGGAGAGAAAGA+TGG | 0.571608 | 8.4:-28090738 | MS.gene28510:CDS |
| AGATGCTTATCTGCATCACT+CGG | 0.576320 | 8.4:+28088494 | None:intergenic |
| TGGAGCAGCAGTTCCATACA+CGG | 0.601685 | 8.4:-28090838 | MS.gene28510:CDS |
| GGGACCTCAGGTTTGACCAA+AGG | 0.623532 | 8.4:-28090711 | MS.gene28510:CDS |
| GATGCTTATCTGCATCACTC+GGG | 0.627986 | 8.4:+28088495 | None:intergenic |
| AAAATGTTGACAGATCGTTC+AGG | 0.642438 | 8.4:+28090582 | None:intergenic |
| AGAGAGCGTTTCATCAGATG+GGG | 0.649369 | 8.4:-28090644 | MS.gene28510:CDS |
| TAGGAGAGAAAGATGGTGTG+GGG | 0.674914 | 8.4:-28090731 | MS.gene28510:CDS |
| CGTTCAGGCAAACCTCTCTG+TGG | 0.700077 | 8.4:+28090597 | None:intergenic |
| GAAGCTTGGAGACCACAGAG+AGG | 0.727720 | 8.4:-28090609 | MS.gene28510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTAGATTTAAATGTA+GGG | + | chr8.4:28089943-28089962 | None:intergenic | 10.0% |
| !! | TTTAACAATAAATATTACAT+AGG | - | chr8.4:28088869-28088888 | MS.gene28510:intron | 10.0% |
| !!! | ACTTTAAAGTTAATTAATAA+AGG | + | chr8.4:28090306-28090325 | None:intergenic | 10.0% |
| !! | ATCTAAATTTCTAAATGTAA+GGG | + | chr8.4:28089728-28089747 | None:intergenic | 15.0% |
| !! | CATTAATTAGATTTAAATGT+AGG | + | chr8.4:28089944-28089963 | None:intergenic | 15.0% |
| !! | CTACATTTAAATCTAATTAA+TGG | - | chr8.4:28089942-28089961 | MS.gene28510:intron | 15.0% |
| !! | CTTATATATTGCTTAAATAA+TGG | + | chr8.4:28090492-28090511 | None:intergenic | 15.0% |
| !! | CTTCTTAATTAGTTAATTAA+CGG | + | chr8.4:28090414-28090433 | None:intergenic | 15.0% |
| !! | TATGTAATTATTACATCTAA+TGG | - | chr8.4:28088994-28089013 | MS.gene28510:intron | 15.0% |
| !! | TTAACTAATTAAGAAGAAAA+AGG | - | chr8.4:28090418-28090437 | MS.gene28510:intron | 15.0% |
| !!! | AATTTTTCACTTAAACTTAA+AGG | + | chr8.4:28089178-28089197 | None:intergenic | 15.0% |
| !! | AAATTAATTGCAGTTAAAAC+AGG | + | chr8.4:28090611-28090630 | None:intergenic | 20.0% |
| !! | AATCTCTAAATAATATTGGT+AGG | + | chr8.4:28089753-28089772 | None:intergenic | 20.0% |
| !! | AGCTCATATTATAATAATTG+TGG | - | chr8.4:28090181-28090200 | MS.gene28510:intron | 20.0% |
| !! | ATATGAGTGGAAATAAATTT+AGG | + | chr8.4:28089781-28089800 | None:intergenic | 20.0% |
| !! | ATTACATAGGATAAAAGAAT+GGG | - | chr8.4:28088882-28088901 | MS.gene28510:intron | 20.0% |
| !! | CTCAAATCTCTAAATAATAT+TGG | + | chr8.4:28089757-28089776 | None:intergenic | 20.0% |
| !! | GATCTAAATTTCTAAATGTA+AGG | + | chr8.4:28089729-28089748 | None:intergenic | 20.0% |
| !! | TAGAGAGAAAAACAAATTTA+AGG | - | chr8.4:28090045-28090064 | MS.gene28510:intron | 20.0% |
| !! | TATTACATAGGATAAAAGAA+TGG | - | chr8.4:28088881-28088900 | MS.gene28510:intron | 20.0% |
| !! | TCTAAATTTCTAAATGTAAG+GGG | + | chr8.4:28089727-28089746 | None:intergenic | 20.0% |
| !! | TGTATAGTAATATTAGAGAA+AGG | - | chr8.4:28090748-28090767 | MS.gene28510:CDS | 20.0% |
| ! | AAACATAGTTGTGAGTTATT+AGG | - | chr8.4:28088583-28088602 | MS.gene28510:intron | 25.0% |
| ! | ATCCAAATCTCTAAATGTAA+AGG | + | chr8.4:28089287-28089306 | None:intergenic | 25.0% |
| ! | ATCCAAATCTCTAAATGTAA+GGG | + | chr8.4:28089287-28089306 | None:intergenic | 25.0% |
| ! | ATCGAAATTTCTAAGTGTAA+AGG | + | chr8.4:28089876-28089895 | None:intergenic | 25.0% |
| ! | TCCAAATCTCTAAATGTAAA+GGG | + | chr8.4:28089433-28089452 | None:intergenic | 25.0% |
| ! | TCCAAATCTCTAAATGTAAT+CGG | + | chr8.4:28089286-28089305 | None:intergenic | 25.0% |
| ! | TCGAAATTTCTAAGTGTAAA+GGG | + | chr8.4:28089875-28089894 | None:intergenic | 25.0% |
| !! | AATTTAAAACCCTAGAGTAA+GGG | - | chr8.4:28089060-28089079 | MS.gene28510:intron | 25.0% |
| AACTCATTTGACCTAGTAAT+GGG | - | chr8.4:28088469-28088488 | MS.gene28510:CDS | 30.0% | |
| AAGAAAATGTTCAAAAAGCC+AGG | + | chr8.4:28088782-28088801 | None:intergenic | 30.0% | |
| AAGGTGAATGTGTGTTTATA+CGG | - | chr8.4:28090767-28090786 | MS.gene28510:CDS | 30.0% | |
| AATGTGTGTTTATACGGTTA+AGG | - | chr8.4:28090773-28090792 | MS.gene28510:CDS | 30.0% | |
| ACCCTTTACATTTAGAGATT+TGG | - | chr8.4:28089429-28089448 | MS.gene28510:intron | 30.0% | |
| ACCGATTACATTTAGAGATT+TGG | - | chr8.4:28089282-28089301 | MS.gene28510:intron | 30.0% | |
| ATGTGTGTTTATACGGTTAA+GGG | - | chr8.4:28090774-28090793 | MS.gene28510:CDS | 30.0% | |
| CATCCTTTAAACAACGAAAA+TGG | + | chr8.4:28088546-28088565 | None:intergenic | 30.0% | |
| GACTTTGATCATTTACAACA+AGG | - | chr8.4:28089138-28089157 | MS.gene28510:intron | 30.0% | |
| GATCCAAATCTCTAAATGTA+AGG | + | chr8.4:28089288-28089307 | None:intergenic | 30.0% | |
| GCACTCAAATTTCTAAGTAA+CGG | + | chr8.4:28089319-28089338 | None:intergenic | 30.0% | |
| TACACTTAGAAATTTCGATC+AGG | - | chr8.4:28089877-28089896 | MS.gene28510:intron | 30.0% | |
| TCCAAATCTCTAAATGTAAG+GGG | + | chr8.4:28089580-28089599 | None:intergenic | 30.0% | |
| TGTTCAAGAAGTTTAAGTCT+TGG | + | chr8.4:28088655-28088674 | None:intergenic | 30.0% | |
| ! | ATTTAAAACCCTAGAGTAAG+GGG | - | chr8.4:28089061-28089080 | MS.gene28510:intron | 30.0% |
| ! | CAATTTAAAACCCTAGAGTA+AGG | - | chr8.4:28089059-28089078 | MS.gene28510:intron | 30.0% |
| ! | GCTTTTAGATTCTCTCTTTA+GGG | + | chr8.4:28090470-28090489 | None:intergenic | 30.0% |
| !! | AGGAGTGTTATATTATGTCA+CGG | + | chr8.4:28090286-28090305 | None:intergenic | 30.0% |
| !! | TACAAGTATTGATCTCATCA+AGG | + | chr8.4:28090366-28090385 | None:intergenic | 30.0% |
| AAAATGTTGACAGATCGTTC+AGG | + | chr8.4:28088754-28088773 | None:intergenic | 35.0% | |
| AATTTAGACCCCTTACTCTA+GGG | + | chr8.4:28089072-28089091 | None:intergenic | 35.0% | |
| AATTTCTAAGTAACGGTGGT+AGG | + | chr8.4:28089312-28089331 | None:intergenic | 35.0% | |
| ACCATGATGTTGTAGTTGTA+GGG | + | chr8.4:28090095-28090114 | None:intergenic | 35.0% | |
| ACCCCTTACATTTAGAGATT+TGG | - | chr8.4:28089576-28089595 | MS.gene28510:intron | 35.0% | |
| AGTGAGTTATTAACATCCCA+GGG | + | chr8.4:28090541-28090560 | None:intergenic | 35.0% | |
| ATCTCTAAATGTAATCGGTG+CGG | + | chr8.4:28089281-28089300 | None:intergenic | 35.0% | |
| CATTAAATTTCAGACACCCT+GGG | - | chr8.4:28090522-28090541 | MS.gene28510:intron | 35.0% | |
| CTCAAATTTCTAAGTAACGG+TGG | + | chr8.4:28089316-28089335 | None:intergenic | 35.0% | |
| GAACTCATTTGACCTAGTAA+TGG | - | chr8.4:28088468-28088487 | MS.gene28510:CDS | 35.0% | |
| GAGTTATTAGGAGAGAAAGA+TGG | - | chr8.4:28088595-28088614 | MS.gene28510:intron | 35.0% | |
| GATCCAAACAATGAATGCTA+GGG | - | chr8.4:28090130-28090149 | MS.gene28510:intron | 35.0% | |
| GGATGCTTTACAACTACATA+TGG | - | chr8.4:28089995-28090014 | MS.gene28510:intron | 35.0% | |
| TAGTGAGTTATTAACATCCC+AGG | + | chr8.4:28090542-28090561 | None:intergenic | 35.0% | |
| TCATTAAATTTCAGACACCC+TGG | - | chr8.4:28090521-28090540 | MS.gene28510:intron | 35.0% | |
| TGATCCAAACAATGAATGCT+AGG | - | chr8.4:28090129-28090148 | MS.gene28510:intron | 35.0% | |
| TTACCCTAGCATTCATTGTT+TGG | + | chr8.4:28090136-28090155 | None:intergenic | 35.0% | |
| TTGCAAAGATTGTGAATGTG+AGG | - | chr8.4:28090245-28090264 | MS.gene28510:intron | 35.0% | |
| TTGTAGTTGTAGGGACAATT+AGG | + | chr8.4:28090086-28090105 | None:intergenic | 35.0% | |
| ! | CAGCTACTATAGAAGTTTTG+AGG | - | chr8.4:28089968-28089987 | MS.gene28510:intron | 35.0% |
| ! | GGCTTTTAGATTCTCTCTTT+AGG | + | chr8.4:28090471-28090490 | None:intergenic | 35.0% |
| ! | TTTAGATTCTCTCTTTAGGG+TGG | + | chr8.4:28090467-28090486 | None:intergenic | 35.0% |
| ! | TTTGACCTAGTAATGGGATT+TGG | - | chr8.4:28088475-28088494 | MS.gene28510:CDS | 35.0% |
| !! | ACGCCATTTTCGTTGTTTAA+AGG | - | chr8.4:28088540-28088559 | MS.gene28510:intron | 35.0% |
| !! | TTAGATTCTCTCTTTAGGGT+GGG | + | chr8.4:28090466-28090485 | None:intergenic | 35.0% |
| !!! | ATGAGTGTGATGTCATTTTC+TGG | - | chr8.4:28090799-28090818 | MS.gene28510:CDS | 35.0% |
| !!! | CTATAGAAGTTTTGAGGACT+TGG | - | chr8.4:28089974-28089993 | MS.gene28510:intron | 35.0% |
| AAGGGGTCTAAATTCTTTGC+AGG | - | chr8.4:28089078-28089097 | MS.gene28510:intron | 40.0% | |
| AGAGTGAGAGAAAGAACGTA+CGG | + | chr8.4:28088808-28088827 | None:intergenic | 40.0% | |
| AGATGCTTATCTGCATCACT+CGG | + | chr8.4:28090842-28090861 | None:intergenic | 40.0% | |
| ATTAGGAGAGAAAGATGGTG+TGG | - | chr8.4:28088600-28088619 | MS.gene28510:intron | 40.0% | |
| ATTTCTAAGTGTAAAGGGCG+TGG | + | chr8.4:28089870-28089889 | None:intergenic | 40.0% | |
| CACCATGATGTTGTAGTTGT+AGG | + | chr8.4:28090096-28090115 | None:intergenic | 40.0% | |
| GAATTTAGACCCCTTACTCT+AGG | + | chr8.4:28089073-28089092 | None:intergenic | 40.0% | |
| TATCATAGATTGTCACGCCA+AGG | - | chr8.4:28090684-28090703 | MS.gene28510:CDS | 40.0% | |
| TCCCTACAACTACAACATCA+TGG | - | chr8.4:28090091-28090110 | MS.gene28510:intron | 40.0% | |
| TTAGGAGAGAAAGATGGTGT+GGG | - | chr8.4:28088601-28088620 | MS.gene28510:intron | 40.0% | |
| TTCTGCAGAGTTGTTGGATA+TGG | + | chr8.4:28089210-28089229 | None:intergenic | 40.0% | |
| TTTCTTTCTGTCTGTCTCCT+TGG | + | chr8.4:28090704-28090723 | None:intergenic | 40.0% | |
| ! | CTAAATGTAAAGGGTGCGAT+TGG | + | chr8.4:28089424-28089443 | None:intergenic | 40.0% |
| ! | CTAGGGTAAGATAACTTGCA+TGG | - | chr8.4:28090147-28090166 | MS.gene28510:intron | 40.0% |
| !! | ATTTTCTGGTCTCTTTCCTC+AGG | - | chr8.4:28090813-28090832 | MS.gene28510:CDS | 40.0% |
| !! | CTAAATGTAAGGGGTGTTGT+TGG | + | chr8.4:28089571-28089590 | None:intergenic | 40.0% |
| !! | TAGATTCTCTCTTTAGGGTG+GGG | + | chr8.4:28090465-28090484 | None:intergenic | 40.0% |
| !! | TGTAGCAATTCTAGAGCTGA+TGG | - | chr8.4:28089112-28089131 | MS.gene28510:intron | 40.0% |
| !! | TGTTGTTTCTGCAGAGTTGT+TGG | + | chr8.4:28089216-28089235 | None:intergenic | 40.0% |
| ACAGCTTCACAGTGCAACAA+TGG | + | chr8.4:28089905-28089924 | None:intergenic | 45.0% | |
| ATCTCTGTGAGAACGTAGCA+AGG | - | chr8.4:28088926-28088945 | MS.gene28510:intron | 45.0% | |
| CAGCTCTGCAACAACTACAA+TGG | - | chr8.4:28089511-28089530 | MS.gene28510:intron | 45.0% | |
| CATCTCTTAGCAAGACAGAC+TGG | - | chr8.4:28090857-28090876 | MS.gene28510:CDS | 45.0% | |
| CTAAATGTAATCGGTGCGGT+TGG | + | chr8.4:28089277-28089296 | None:intergenic | 45.0% | |
| CTGCTCCAAATCCCATTACT+AGG | + | chr8.4:28088483-28088502 | None:intergenic | 45.0% | |
| GAAAAAGGAGTTGCAGAGAG+TGG | - | chr8.4:28090433-28090452 | MS.gene28510:intron | 45.0% | |
| GATGCTTATCTGCATCACTC+GGG | + | chr8.4:28090841-28090860 | None:intergenic | 45.0% | |
| GTTTCATCAGATGGGGATGA+TGG | - | chr8.4:28088696-28088715 | MS.gene28510:intron | 45.0% | |
| TAGGAGAGAAAGATGGTGTG+GGG | - | chr8.4:28088602-28088621 | MS.gene28510:intron | 45.0% | |
| TGTAGTTGTTGCAGAGCTGT+TGG | + | chr8.4:28089510-28089529 | None:intergenic | 45.0% | |
| ! | CTAAATGTAAGGGGTGCAGT+TGG | + | chr8.4:28089718-28089737 | None:intergenic | 45.0% |
| !! | AAGTCTTGGTGTCTCTCCTT+TGG | + | chr8.4:28088641-28088660 | None:intergenic | 45.0% |
| !! | AGAGAGCGTTTCATCAGATG+GGG | - | chr8.4:28088689-28088708 | MS.gene28510:intron | 45.0% |
| !! | CAGAGAGCGTTTCATCAGAT+GGG | - | chr8.4:28088688-28088707 | MS.gene28510:intron | 45.0% |
| !! | CTGTCAACATTTTGAGAGCC+TGG | - | chr8.4:28088761-28088780 | MS.gene28510:intron | 45.0% |
| CTCTCCTTTGGTCAAACCTG+AGG | + | chr8.4:28088629-28088648 | None:intergenic | 50.0% | |
| GCAGAGTCGTTGGATATGAG+TGG | + | chr8.4:28089794-28089813 | None:intergenic | 50.0% | |
| TGGAGCAGCAGTTCCATACA+CGG | - | chr8.4:28088495-28088514 | MS.gene28510:CDS | 50.0% | |
| TGTAGTTGCTGCAGAGTCGT+TGG | + | chr8.4:28089804-28089823 | None:intergenic | 50.0% | |
| TGTTGTTGCTGCAGAGCTGT+TGG | + | chr8.4:28089363-28089382 | None:intergenic | 50.0% | |
| TTCTGAGCTAGTGCCGTGTA+TGG | + | chr8.4:28088511-28088530 | None:intergenic | 50.0% | |
| ! | CTAAGTGTAAAGGGCGTGGT+TGG | + | chr8.4:28089866-28089885 | None:intergenic | 50.0% |
| !! | GCAGAGAGCGTTTCATCAGA+TGG | - | chr8.4:28088687-28088706 | MS.gene28510:intron | 50.0% |
| !! | GGATGATGGAACAGGAAGCT+TGG | - | chr8.4:28088710-28088729 | MS.gene28510:intron | 50.0% |
| !! | TCAGATGGGGATGATGGAAC+AGG | - | chr8.4:28088702-28088721 | MS.gene28510:intron | 50.0% |
| AAAGATGGTGTGGGGACCTC+AGG | - | chr8.4:28088610-28088629 | MS.gene28510:intron | 55.0% | |
| CGTTCAGGCAAACCTCTCTG+TGG | + | chr8.4:28088739-28088758 | None:intergenic | 55.0% | |
| GAAGCTTGGAGACCACAGAG+AGG | - | chr8.4:28088724-28088743 | MS.gene28510:intron | 55.0% | |
| GGGACCTCAGGTTTGACCAA+AGG | - | chr8.4:28088622-28088641 | MS.gene28510:intron | 55.0% | |
| CTGCATCACTCGGGTACCTG+AGG | + | chr8.4:28090832-28090851 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 28088460 | 28090895 | 28088460 | ID=MS.gene28510 |
| chr8.4 | mRNA | 28088460 | 28090895 | 28088460 | ID=MS.gene28510.t1;Parent=MS.gene28510 |
| chr8.4 | exon | 28090549 | 28090895 | 28090549 | ID=MS.gene28510.t1.exon1;Parent=MS.gene28510.t1 |
| chr8.4 | CDS | 28090549 | 28090895 | 28090549 | ID=cds.MS.gene28510.t1;Parent=MS.gene28510.t1 |
| chr8.4 | exon | 28088460 | 28088520 | 28088460 | ID=MS.gene28510.t1.exon2;Parent=MS.gene28510.t1 |
| chr8.4 | CDS | 28088460 | 28088520 | 28088460 | ID=cds.MS.gene28510.t1;Parent=MS.gene28510.t1 |
| Gene Sequence |
| Protein sequence |
