Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29220.t1 | XP_013466911.1 | 98.6 | 354 | 5 | 0 | 1 | 354 | 99 | 452 | 6.70E-205 | 723 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29220.t1 | Q99JW2 | 45.9 | 342 | 166 | 6 | 1 | 340 | 76 | 400 | 4.7e-82 | 306.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29220.t1 | A0A072VH72 | 98.6 | 354 | 5 | 0 | 1 | 354 | 99 | 452 | 4.8e-205 | 723.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene29220 | -0.800267 | 1.56E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene29220 | -0.812111 | 5.00E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene29220 | -0.803975 | 2.70E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene29220 | -0.800587 | 1.34E-48 | -1.69E-46 |
| MS.gene054291 | MS.gene29220 | 0.836769 | 7.70E-57 | -1.69E-46 |
| MS.gene054775 | MS.gene29220 | -0.812637 | 3.83E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene29220 | -0.833787 | 4.36E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene29220 | -0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene29220 | -0.814346 | 1.61E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene29220 | -0.800541 | 1.37E-48 | -1.69E-46 |
| MS.gene057156 | MS.gene29220 | 0.817001 | 4.14E-52 | -1.69E-46 |
| MS.gene060137 | MS.gene29220 | 0.816655 | 4.95E-52 | -1.69E-46 |
| MS.gene060802 | MS.gene29220 | -0.844757 | 6.20E-59 | -1.69E-46 |
| MS.gene060803 | MS.gene29220 | -0.819215 | 1.31E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene65894 | MS.gene29220 | PPI |
| MS.gene99939 | MS.gene29220 | PPI |
| MS.gene29220 | MS.gene94073 | PPI |
| MS.gene053778 | MS.gene29220 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29220.t1 | MTR_1g038920 | 98.588 | 354 | 5 | 0 | 1 | 354 | 99 | 452 | 0.0 | 731 |
| MS.gene29220.t1 | MTR_1g038920 | 97.740 | 354 | 5 | 1 | 1 | 354 | 99 | 449 | 0.0 | 719 |
| MS.gene29220.t1 | MTR_1g039010 | 87.006 | 354 | 43 | 1 | 1 | 354 | 96 | 446 | 0.0 | 647 |
| MS.gene29220.t1 | MTR_5g058430 | 56.627 | 332 | 141 | 1 | 1 | 332 | 13 | 341 | 1.03e-137 | 395 |
| MS.gene29220.t1 | MTR_0400s0010 | 98.870 | 177 | 2 | 0 | 141 | 317 | 1 | 177 | 2.27e-127 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29220.t1 | AT4G38220 | 74.294 | 354 | 83 | 2 | 1 | 354 | 88 | 433 | 0.0 | 546 |
| MS.gene29220.t1 | AT4G38220 | 73.446 | 354 | 83 | 3 | 1 | 354 | 88 | 430 | 0.0 | 535 |
| MS.gene29220.t1 | AT1G44180 | 57.895 | 342 | 141 | 1 | 1 | 342 | 95 | 433 | 1.15e-153 | 439 |
| MS.gene29220.t1 | AT1G44180 | 57.895 | 342 | 141 | 1 | 1 | 342 | 95 | 433 | 1.15e-153 | 439 |
| MS.gene29220.t1 | AT1G44180 | 57.895 | 342 | 141 | 1 | 1 | 342 | 95 | 433 | 1.15e-153 | 439 |
| MS.gene29220.t1 | AT1G44820 | 56.433 | 342 | 146 | 1 | 1 | 342 | 93 | 431 | 1.04e-149 | 429 |
Find 105 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTGGTGATCAAGGCCGTT+GGG | 0.264666 | 1.1:+23515654 | MS.gene29220:CDS |
| GTTGCCGCAATATGTCTTTC+AGG | 0.272688 | 1.1:+23516425 | MS.gene29220:CDS |
| CTTCTCCGGATGAGCATTAC+AGG | 0.281836 | 1.1:+23515603 | MS.gene29220:CDS |
| TTTGGTGATGACTGGTTTCC+CGG | 0.303974 | 1.1:-23517114 | None:intergenic |
| ACAAAATAAACAGTCCTCTT+AGG | 0.312038 | 1.1:-23514550 | None:intergenic |
| ATCAAGGCCGTTGGGGCTCC+TGG | 0.314301 | 1.1:+23515662 | MS.gene29220:CDS |
| CGTGTTGGATTGCCTGCTAT+TGG | 0.355347 | 1.1:+23517251 | MS.gene29220:CDS |
| CTGTCTGTGCTTGATGCGTC+CGG | 0.371317 | 1.1:+23517095 | MS.gene29220:CDS |
| CTTGATCAAGGCCGGCTTGA+AGG | 0.382373 | 1.1:+23515775 | MS.gene29220:CDS |
| GGGATTGGAACTGTCAGTTT+TGG | 0.383485 | 1.1:-23517132 | None:intergenic |
| CTGTTAGGATTCTTAAAAGT+TGG | 0.386826 | 1.1:+23514518 | MS.gene29220:CDS |
| CCCGTGGTGGCTGGTGATCA+AGG | 0.408652 | 1.1:+23515646 | MS.gene29220:CDS |
| CAAGTTTCCCACCAGCCTCT+TGG | 0.413037 | 1.1:-23517181 | None:intergenic |
| TGTTAGGATTCTTAAAAGTT+GGG | 0.416087 | 1.1:+23514519 | MS.gene29220:CDS |
| TTTGCTCCTGATGAGGAGAT+TGG | 0.425043 | 1.1:+23514574 | MS.gene29220:CDS |
| CAAGAGGCTGGTGGGAAACT+TGG | 0.430179 | 1.1:+23517182 | MS.gene29220:CDS |
| TGGCTGGTGATCAAGGCCGT+TGG | 0.430324 | 1.1:+23515653 | MS.gene29220:CDS |
| TGGAGTTCCAGCCTTCAAAA+AGG | 0.433167 | 1.1:-23515828 | None:intergenic |
| TGCAGTATCTTGAAGCTGTT+AGG | 0.436357 | 1.1:+23514503 | MS.gene29220:CDS |
| CAGCCATCTGAAGCAGAAGC+TGG | 0.440378 | 1.1:+23516328 | MS.gene29220:CDS |
| GCCGTTGGGGCTCCTGGACA+TGG | 0.455669 | 1.1:+23515668 | MS.gene29220:CDS |
| TTGTGGTCATGGAGTAGAAT+AGG | 0.455956 | 1.1:-23517296 | None:intergenic |
| TAACAATCCCCACCAGGGAT+TGG | 0.458968 | 1.1:-23517147 | None:intergenic |
| AGCAGAGTTGTCATAAAGCT+TGG | 0.472153 | 1.1:-23515693 | None:intergenic |
| TGCTATTGGATTCTCACCTA+TGG | 0.472403 | 1.1:+23517265 | MS.gene29220:CDS |
| TAAAGCTTGGAGCCATGTCC+AGG | 0.472960 | 1.1:-23515680 | None:intergenic |
| AACGCCCTGTAATGCTCATC+CGG | 0.476649 | 1.1:-23515608 | None:intergenic |
| ACTAACAGGACTGGCTTCTC+CGG | 0.478911 | 1.1:+23515589 | MS.gene29220:intron |
| TGACCACCAATCTCCTCATC+AGG | 0.479072 | 1.1:-23514580 | None:intergenic |
| ACAAAGATGAATACTTGAAA+GGG | 0.479424 | 1.1:+23518262 | MS.gene29220:CDS |
| TTGCCGCAATATGTCTTTCA+GGG | 0.484195 | 1.1:+23516426 | MS.gene29220:CDS |
| CAGTTTGACTTGATCAAGGC+CGG | 0.486990 | 1.1:+23515767 | MS.gene29220:CDS |
| AAATCACCTCATTGTGGTCA+TGG | 0.491849 | 1.1:-23517307 | None:intergenic |
| CTCACAGTTTGACTTGATCA+AGG | 0.494700 | 1.1:+23515763 | MS.gene29220:CDS |
| GCAACTAGGTGCCCACTCTT+CGG | 0.499636 | 1.1:-23516407 | None:intergenic |
| CACAAAGATGAATACTTGAA+AGG | 0.501698 | 1.1:+23518261 | MS.gene29220:CDS |
| GAAAATGCTGTCCAAGAGGC+TGG | 0.508612 | 1.1:+23517170 | MS.gene29220:CDS |
| ACCCACTTATCGTGTTCAGC+GGG | 0.510675 | 1.1:-23514400 | None:intergenic |
| GATTTATGCAAGAGGGTCAC+AGG | 0.512669 | 1.1:+23514462 | MS.gene29220:CDS |
| GTGGGTCCATGATCCTTTCA+AGG | 0.516268 | 1.1:+23514417 | MS.gene29220:CDS |
| TCCCCGCTGAACACGATAAG+TGG | 0.518305 | 1.1:+23514398 | MS.gene29220:CDS |
| GCTTTATGACAACTCTGCTA+TGG | 0.522983 | 1.1:+23515697 | MS.gene29220:CDS |
| AGAGAGGAGCCCGTGGTGGC+TGG | 0.525075 | 1.1:+23515637 | MS.gene29220:CDS |
| GTTTGACTTACAGTTGGAGA+TGG | 0.526780 | 1.1:-23515848 | None:intergenic |
| CCTTGATCACCAGCCACCAC+GGG | 0.533837 | 1.1:-23515646 | None:intergenic |
| ACTGTGAGGCGCGAAACCTT+CGG | 0.536388 | 1.1:-23515748 | None:intergenic |
| ATCTCTTACACGTTCATCGA+AGG | 0.538649 | 1.1:-23518322 | None:intergenic |
| AATGATTCTGCATCAGCGGT+TGG | 0.539171 | 1.1:-23516370 | None:intergenic |
| CATGGGCCTTGAAAGGATCA+TGG | 0.539532 | 1.1:-23514423 | None:intergenic |
| TGGTGGGAAACTTGGTAAGC+CGG | 0.540180 | 1.1:+23517190 | MS.gene29220:CDS |
| AAGGCCCATGTGGATGATGA+AGG | 0.540460 | 1.1:+23514436 | MS.gene29220:CDS |
| GCTCCTGATGAGGAGATTGG+TGG | 0.541895 | 1.1:+23514577 | MS.gene29220:CDS |
| TGTCTGTGCTTGATGCGTCC+GGG | 0.541941 | 1.1:+23517096 | MS.gene29220:CDS |
| GGCCGGCTTGAAGGCTGAAG+GGG | 0.544594 | 1.1:+23515784 | MS.gene29220:CDS |
| GTGGAAGCAGGAAAGATCTC+CGG | 0.545776 | 1.1:-23517209 | None:intergenic |
| TAGCGTGCATCTGTGGAAGC+AGG | 0.546751 | 1.1:-23517221 | None:intergenic |
| GCACGCTATTTCCGCCGTGT+TGG | 0.549497 | 1.1:+23517236 | MS.gene29220:CDS |
| GAGGAGATTGGTGGTCATGA+TGG | 0.557016 | 1.1:+23514586 | MS.gene29220:CDS |
| TCATCCACATGGGCCTTGAA+AGG | 0.560463 | 1.1:-23514430 | None:intergenic |
| CCCATGTGGATGATGAAGGA+AGG | 0.560586 | 1.1:+23514440 | MS.gene29220:CDS |
| CTCTAATGATTCTGCATCAG+CGG | 0.561783 | 1.1:-23516374 | None:intergenic |
| GGATGTTGTTTCTATTAACA+TGG | 0.563003 | 1.1:+23515805 | MS.gene29220:CDS |
| TTCGATGAACGTGTAAGAGA+TGG | 0.564600 | 1.1:+23518324 | MS.gene29220:CDS |
| GCCATGTCCAGGAGCCCCAA+CGG | 0.565920 | 1.1:-23515669 | None:intergenic |
| GCCTTGATCACCAGCCACCA+CGG | 0.571593 | 1.1:-23515647 | None:intergenic |
| TCCTTCCTTCATCATCCACA+TGG | 0.571894 | 1.1:-23514441 | None:intergenic |
| AATCCAGCTTCTGCTTCAGA+TGG | 0.575529 | 1.1:-23516331 | None:intergenic |
| AGGCCGGCTTGAAGGCTGAA+GGG | 0.576200 | 1.1:+23515783 | MS.gene29220:CDS |
| AAAGACATATTGCGGCAACT+AGG | 0.577793 | 1.1:-23516421 | None:intergenic |
| AAACTGACAGTTCCAATCCC+TGG | 0.578875 | 1.1:+23517135 | MS.gene29220:CDS |
| GCGGAAATAGCGTGCATCTG+TGG | 0.578906 | 1.1:-23517228 | None:intergenic |
| ATAGGTGAGAATCCAATAGC+AGG | 0.581430 | 1.1:-23517263 | None:intergenic |
| GCTCTACTCTCACACTGATG+TGG | 0.583803 | 1.1:+23514375 | MS.gene29220:CDS |
| AGAATAGGAGTGTTTGCCAT+AGG | 0.586699 | 1.1:-23517281 | None:intergenic |
| GCTGGTGATCAAGGCCGTTG+GGG | 0.592758 | 1.1:+23515655 | MS.gene29220:CDS |
| AAGGCCGGCTTGAAGGCTGA+AGG | 0.594320 | 1.1:+23515782 | MS.gene29220:CDS |
| GACAGTTCCAATCCCTGGTG+GGG | 0.594707 | 1.1:+23517140 | MS.gene29220:CDS |
| ATCCCCTTCAGCCTTCAAGC+CGG | 0.595969 | 1.1:-23515786 | None:intergenic |
| GATTCTGCATCAGCGGTTGG+TGG | 0.596145 | 1.1:-23516367 | None:intergenic |
| TGACAGTTCCAATCCCTGGT+GGG | 0.600989 | 1.1:+23517139 | MS.gene29220:CDS |
| TTACCCTGAAAGACATATTG+CGG | 0.602668 | 1.1:-23516429 | None:intergenic |
| GAGGCGAATTGCCGAAGAGT+GGG | 0.609461 | 1.1:+23516396 | MS.gene29220:CDS |
| ATGCTGTCCAAGAGGCTGGT+GGG | 0.609698 | 1.1:+23517174 | MS.gene29220:CDS |
| GTTGGTATAGTGCTTGATGA+AGG | 0.613803 | 1.1:+23514652 | MS.gene29220:CDS |
| AATGCTGTCCAAGAGGCTGG+TGG | 0.620047 | 1.1:+23517173 | MS.gene29220:CDS |
| CCCCGCTGAACACGATAAGT+GGG | 0.624192 | 1.1:+23514399 | MS.gene29220:CDS |
| AGAGGCGAATTGCCGAAGAG+TGG | 0.624515 | 1.1:+23516395 | MS.gene29220:CDS |
| AGAGTATTGAAAGCATCCGA+AGG | 0.637964 | 1.1:+23515732 | MS.gene29220:CDS |
| GTTAGAAAATGCTGTCCAAG+AGG | 0.638244 | 1.1:+23517166 | MS.gene29220:CDS |
| GACCCACTTATCGTGTTCAG+CGG | 0.643595 | 1.1:-23514401 | None:intergenic |
| AAGGAAGGATTTATGCAAGA+GGG | 0.648002 | 1.1:+23514455 | MS.gene29220:CDS |
| CAATAGCAGGCAATCCAACA+CGG | 0.650903 | 1.1:-23517250 | None:intergenic |
| ATGCAGAGAGGAGCCCGTGG+TGG | 0.659419 | 1.1:+23515633 | MS.gene29220:CDS |
| TTCTCCGGATGAGCATTACA+GGG | 0.659788 | 1.1:+23515604 | MS.gene29220:CDS |
| TCTATGCAGAGAGGAGCCCG+TGG | 0.664265 | 1.1:+23515630 | MS.gene29220:CDS |
| CCTTCCTTCATCATCCACAT+GGG | 0.670602 | 1.1:-23514440 | None:intergenic |
| GAAGGAAGGATTTATGCAAG+AGG | 0.673198 | 1.1:+23514454 | MS.gene29220:CDS |
| CTGATGCAGAATCATTAGAG+AGG | 0.675563 | 1.1:+23516377 | MS.gene29220:CDS |
| TCTACTCCATGACCACAATG+AGG | 0.677316 | 1.1:+23517301 | MS.gene29220:CDS |
| TGATCCTTTCAAGGCCCATG+TGG | 0.688332 | 1.1:+23514426 | MS.gene29220:CDS |
| CTTGATCAAGTCAAACTGTG+AGG | 0.692029 | 1.1:-23515762 | None:intergenic |
| CTGACAGTTCCAATCCCTGG+TGG | 0.706841 | 1.1:+23517138 | MS.gene29220:CDS |
| CCCACTTATCGTGTTCAGCG+GGG | 0.709300 | 1.1:-23514399 | None:intergenic |
| ACAGGGCGTTCTATGCAGAG+AGG | 0.731851 | 1.1:+23515621 | MS.gene29220:CDS |
| TAGCAGGCAATCCAACACGG+CGG | 0.783188 | 1.1:-23517247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAAAAAAAATT+AGG | - | chr1.1:23516602-23516621 | None:intergenic | 0.0% |
| !!! | TGACATTTTTTAAATTATTA+TGG | + | chr1.1:23516880-23516899 | MS.gene29220:intron | 10.0% |
| !! | ATGATAAATATAAAGCATAA+TGG | - | chr1.1:23516467-23516486 | None:intergenic | 15.0% |
| !! | TTTGTAAGTGAATAAAAAAT+TGG | - | chr1.1:23515570-23515589 | None:intergenic | 15.0% |
| !!! | ATGAAAAAGTATTTATAAGA+GGG | - | chr1.1:23517847-23517866 | None:intergenic | 15.0% |
| !!! | TTTTTAAATTATTATGGAGA+AGG | + | chr1.1:23516886-23516905 | MS.gene29220:intron | 15.0% |
| !! | AAAGTAGAAGATAATTCATT+AGG | + | chr1.1:23514827-23514846 | MS.gene29220:intron | 20.0% |
| !! | AAATTCTTAGAAAACTGATT+TGG | + | chr1.1:23514988-23515007 | MS.gene29220:intron | 20.0% |
| !! | ATGTTAAATAAATTTACCCT+TGG | + | chr1.1:23515349-23515368 | MS.gene29220:intron | 20.0% |
| !! | GTTTCTTAATACTTAGAATT+TGG | + | chr1.1:23517576-23517595 | MS.gene29220:intron | 20.0% |
| !! | TATTAGAACATTTCATATCA+TGG | + | chr1.1:23516659-23516678 | MS.gene29220:intron | 20.0% |
| !! | TGTGAAATGTATTATTTCAA+AGG | - | chr1.1:23516202-23516221 | None:intergenic | 20.0% |
| !!! | AATACTCTTTAATTTCTGTT+AGG | + | chr1.1:23515266-23515285 | MS.gene29220:intron | 20.0% |
| !!! | CATGAAAAAGTATTTATAAG+AGG | - | chr1.1:23517848-23517867 | None:intergenic | 20.0% |
| ! | AAAAAAACTTATCTCTGATG+TGG | - | chr1.1:23517964-23517983 | None:intergenic | 25.0% |
| ! | AAAGAACAGCAATTCATATT+TGG | - | chr1.1:23515409-23515428 | None:intergenic | 25.0% |
| ! | AAATAAATTTACCCTTGGTT+TGG | + | chr1.1:23515354-23515373 | MS.gene29220:intron | 25.0% |
| ! | AACTCAAATATCTAAATCTG+TGG | - | chr1.1:23514965-23514984 | None:intergenic | 25.0% |
| ! | AAGAAAGATAGAATCATTAG+TGG | - | chr1.1:23516276-23516295 | None:intergenic | 25.0% |
| ! | AATGATAGAAATACTTCCTA+TGG | - | chr1.1:23516565-23516584 | None:intergenic | 25.0% |
| ! | ACAAAGATGAATACTTGAAA+GGG | + | chr1.1:23518262-23518281 | MS.gene29220:CDS | 25.0% |
| ! | ACTATGTCCTAGTTAATATA+AGG | + | chr1.1:23517445-23517464 | MS.gene29220:intron | 25.0% |
| ! | AGAAAGATAGAATCATTAGT+GGG | - | chr1.1:23516275-23516294 | None:intergenic | 25.0% |
| ! | ATACAACCAAAAAGAACATA+AGG | - | chr1.1:23518156-23518175 | None:intergenic | 25.0% |
| ! | ATAGAAAACAACTGAAAAAC+GGG | + | chr1.1:23516768-23516787 | MS.gene29220:intron | 25.0% |
| ! | ATGAAAATGTGTTCATAAGT+GGG | - | chr1.1:23517641-23517660 | None:intergenic | 25.0% |
| ! | ATGTGAAAAGGTTAATGTTA+TGG | + | chr1.1:23516715-23516734 | MS.gene29220:intron | 25.0% |
| ! | ATTTATAGTCTGTTAAAGTG+AGG | + | chr1.1:23514693-23514712 | MS.gene29220:intron | 25.0% |
| ! | CATAGAAAACAACTGAAAAA+CGG | + | chr1.1:23516767-23516786 | MS.gene29220:intron | 25.0% |
| ! | GTAGTAGATAATGAAAATGA+TGG | + | chr1.1:23516915-23516934 | MS.gene29220:intron | 25.0% |
| ! | TATTAAGAAACATGTCAACA+TGG | - | chr1.1:23517567-23517586 | None:intergenic | 25.0% |
| ! | TATTATTTCAAAGGTAAGCA+TGG | - | chr1.1:23516193-23516212 | None:intergenic | 25.0% |
| ! | TATTGTGTATTTACAAGACA+TGG | - | chr1.1:23516490-23516509 | None:intergenic | 25.0% |
| ! | TGTTAGGATTCTTAAAAGTT+GGG | + | chr1.1:23514519-23514538 | MS.gene29220:CDS | 25.0% |
| ! | TTATTCACTTACAAACTAAC+AGG | + | chr1.1:23515575-23515594 | MS.gene29220:intron | 25.0% |
| ! | TTTCGATTATATTCTACTCA+TGG | - | chr1.1:23516092-23516111 | None:intergenic | 25.0% |
| !! | ATGAAAGCCTTATATTAACT+AGG | - | chr1.1:23517455-23517474 | None:intergenic | 25.0% |
| !! | TTCATCTTTTCTATGTGAAA+AGG | + | chr1.1:23516703-23516722 | MS.gene29220:intron | 25.0% |
| !!! | ACCTGAATATTTTTTGTACA+TGG | - | chr1.1:23517521-23517540 | None:intergenic | 25.0% |
| !!! | ATAGGTTTTAGGTATTTGAA+AGG | + | chr1.1:23515011-23515030 | MS.gene29220:intron | 25.0% |
| !!! | GGTAATTTGTTCTCAAAAAA+AGG | - | chr1.1:23517022-23517041 | None:intergenic | 25.0% |
| !!! | TCCTCTAATATATTTTAGCT+CGG | + | chr1.1:23517056-23517075 | MS.gene29220:intron | 25.0% |
| AAAAATTGCAGAGAACATGA+AGG | - | chr1.1:23516685-23516704 | None:intergenic | 30.0% | |
| AACTAAATGCAAGTACAGTA+AGG | - | chr1.1:23518193-23518212 | None:intergenic | 30.0% | |
| AATCACATTTGTCTCAAGAA+AGG | - | chr1.1:23515239-23515258 | None:intergenic | 30.0% | |
| ACAAAATAAACAGTCCTCTT+AGG | - | chr1.1:23514553-23514572 | None:intergenic | 30.0% | |
| ACACAATAATCTCAGCTAAT+AGG | + | chr1.1:23516502-23516521 | MS.gene29220:intron | 30.0% | |
| ACTAATTGGATTGTCACATA+AGG | - | chr1.1:23514931-23514950 | None:intergenic | 30.0% | |
| ACTCTTGTGTTACATGTTTA+TGG | - | chr1.1:23518005-23518024 | None:intergenic | 30.0% | |
| ATCACCAAATTAGTGTGTTT+AGG | - | chr1.1:23515491-23515510 | None:intergenic | 30.0% | |
| CAAATATGCAACAATTGGAT+TGG | - | chr1.1:23517908-23517927 | None:intergenic | 30.0% | |
| CAATCCAATTGTTGCATATT+TGG | + | chr1.1:23517906-23517925 | MS.gene29220:intron | 30.0% | |
| CAATTGCAAATTGAATTCCA+TGG | + | chr1.1:23515970-23515989 | MS.gene29220:intron | 30.0% | |
| CACAAAGATGAATACTTGAA+AGG | + | chr1.1:23518261-23518280 | MS.gene29220:CDS | 30.0% | |
| CAGAACATTGATATGATAAG+AGG | - | chr1.1:23516139-23516158 | None:intergenic | 30.0% | |
| CATGAAAATGTGTTCATAAG+TGG | - | chr1.1:23517642-23517661 | None:intergenic | 30.0% | |
| CTATAGAAATTTGTAGCCAT+AGG | + | chr1.1:23516546-23516565 | MS.gene29220:intron | 30.0% | |
| CTGTTAGGATTCTTAAAAGT+TGG | + | chr1.1:23514518-23514537 | MS.gene29220:CDS | 30.0% | |
| GAAAGATAGAATCATTAGTG+GGG | - | chr1.1:23516274-23516293 | None:intergenic | 30.0% | |
| GACATGTTTGATGAATTTGA+TGG | - | chr1.1:23515886-23515905 | None:intergenic | 30.0% | |
| GCCATGTACAAAAAATATTC+AGG | + | chr1.1:23517517-23517536 | MS.gene29220:intron | 30.0% | |
| TAAGCATACTAGCATCAATT+AGG | - | chr1.1:23517350-23517369 | None:intergenic | 30.0% | |
| TAGAAAACAACTGAAAAACG+GGG | + | chr1.1:23516769-23516788 | MS.gene29220:intron | 30.0% | |
| TAGAGGAAGAATCTAATAAG+AGG | - | chr1.1:23517043-23517062 | None:intergenic | 30.0% | |
| TCAACATGGAAACAGAATAA+AGG | - | chr1.1:23517553-23517572 | None:intergenic | 30.0% | |
| TGATGAATTTGATGGAGTAT+TGG | - | chr1.1:23515878-23515897 | None:intergenic | 30.0% | |
| TGTTCTGTTATACATTTGAG+TGG | + | chr1.1:23516152-23516171 | MS.gene29220:intron | 30.0% | |
| TTGTAAAAATCACCTCATTG+TGG | - | chr1.1:23517316-23517335 | None:intergenic | 30.0% | |
| TTTCAGTTATAGTCAAACCA+AGG | - | chr1.1:23515314-23515333 | None:intergenic | 30.0% | |
| ! | AATGTTATGGTTGATGCATT+TGG | + | chr1.1:23516728-23516747 | MS.gene29220:intron | 30.0% |
| ! | ACTTAAATTATAGTTCTGCG+CGG | + | chr1.1:23515920-23515939 | MS.gene29220:intron | 30.0% |
| ! | ATGTTATGGTTGATGCATTT+GGG | + | chr1.1:23516729-23516748 | MS.gene29220:intron | 30.0% |
| ! | CACTTATGAACACATTTTCA+TGG | + | chr1.1:23517640-23517659 | MS.gene29220:intron | 30.0% |
| ! | TATGCACCTTATGTTCTTTT+TGG | + | chr1.1:23518147-23518166 | MS.gene29220:intron | 30.0% |
| ! | TATTAACATGGCCTTTTTGA+AGG | + | chr1.1:23515817-23515836 | MS.gene29220:CDS | 30.0% |
| !! | CTTAGAAAACTGATTTGGAT+AGG | + | chr1.1:23514993-23515012 | MS.gene29220:intron | 30.0% |
| !! | GGATGTTGTTTCTATTAACA+TGG | + | chr1.1:23515805-23515824 | MS.gene29220:CDS | 30.0% |
| !!! | AACTGATTTGGATAGGTTTT+AGG | + | chr1.1:23515000-23515019 | MS.gene29220:intron | 30.0% |
| !!! | ACAAGTGTTTGGTTTTACAT+TGG | + | chr1.1:23515196-23515215 | MS.gene29220:intron | 30.0% |
| !!! | CCTCTAATATATTTTAGCTC+GGG | + | chr1.1:23517057-23517076 | MS.gene29220:intron | 30.0% |
| AAAGGTAAGCATGGCATTAT+TGG | - | chr1.1:23516184-23516203 | None:intergenic | 35.0% | |
| AAGGAAGGATTTATGCAAGA+GGG | + | chr1.1:23514455-23514474 | MS.gene29220:CDS | 35.0% | |
| AAGTCATGTCATTGTCTGTA+GGG | + | chr1.1:23517377-23517396 | MS.gene29220:intron | 35.0% | |
| ACAGTAAGGTGAAAGACATT+AGG | - | chr1.1:23518179-23518198 | None:intergenic | 35.0% | |
| ACATTCATTACCATACAAGC+CGG | - | chr1.1:23517822-23517841 | None:intergenic | 35.0% | |
| AGTTGCACAATTACAGTCAT+CGG | - | chr1.1:23516850-23516869 | None:intergenic | 35.0% | |
| ATTATTATGGAGAAGGCAAG+AGG | + | chr1.1:23516893-23516912 | MS.gene29220:intron | 35.0% | |
| CAAGCCAAATATGCAACAAT+TGG | - | chr1.1:23517913-23517932 | None:intergenic | 35.0% | |
| CAAGTCAATGTTCCAAAGTT+AGG | - | chr1.1:23515520-23515539 | None:intergenic | 35.0% | |
| CCCGAGCTAAAATATATTAG+AGG | - | chr1.1:23517060-23517079 | None:intergenic | 35.0% | |
| CTCACCTAAACACACTAATT+TGG | + | chr1.1:23515484-23515503 | MS.gene29220:intron | 35.0% | |
| CTGTTAGGCAAACTTGATTT+CGG | + | chr1.1:23515281-23515300 | MS.gene29220:intron | 35.0% | |
| GAGTTAAGTCTAACTCTACT+CGG | + | chr1.1:23517791-23517810 | MS.gene29220:intron | 35.0% | |
| GGTGATGATATACCTAACTT+TGG | + | chr1.1:23515505-23515524 | MS.gene29220:intron | 35.0% | |
| GTTATAGTCAAACCAAGGTT+TGG | - | chr1.1:23515309-23515328 | None:intergenic | 35.0% | |
| TAAGTCATGTCATTGTCTGT+AGG | + | chr1.1:23517376-23517395 | MS.gene29220:intron | 35.0% | |
| TATCATAGTCTATCCCTGTT+AGG | - | chr1.1:23517757-23517776 | None:intergenic | 35.0% | |
| TATCTCTGATGTGGCAAATA+AGG | - | chr1.1:23517955-23517974 | None:intergenic | 35.0% | |
| TTACCACTCTACAAATGTTG+CGG | + | chr1.1:23516006-23516025 | MS.gene29220:intron | 35.0% | |
| TTACCCTGAAAGACATATTG+CGG | - | chr1.1:23516432-23516451 | None:intergenic | 35.0% | |
| TTTGTGTAACCACAATGTTC+TGG | - | chr1.1:23518117-23518136 | None:intergenic | 35.0% | |
| ! | GCAGTAGATTTGTTTGAGTT+GGG | + | chr1.1:23518066-23518085 | MS.gene29220:intron | 35.0% |
| ! | TGAAAAGTTTTCGCTTTCGA+AGG | + | chr1.1:23514612-23514631 | MS.gene29220:CDS | 35.0% |
| ! | TGCAGTAGATTTGTTTGAGT+TGG | + | chr1.1:23518065-23518084 | MS.gene29220:intron | 35.0% |
| !! | GATTTTCAGGACTTGAATGT+TGG | + | chr1.1:23514634-23514653 | MS.gene29220:CDS | 35.0% |
| !! | GCATTTTTCAGAACACAAAG+TGG | - | chr1.1:23518048-23518067 | None:intergenic | 35.0% |
| !! | TTTTGAGAGAAAGCGATTGT+AGG | - | chr1.1:23516964-23516983 | None:intergenic | 35.0% |
| !!! | TTTTGTTTTTGCTCCTGATG+AGG | + | chr1.1:23514567-23514586 | MS.gene29220:CDS | 35.0% |
| AAACACTTGTAGCACGCATT+TGG | - | chr1.1:23515186-23515205 | None:intergenic | 40.0% | |
| AAAGACATATTGCGGCAACT+AGG | - | chr1.1:23516424-23516443 | None:intergenic | 40.0% | |
| AAATCACCTCATTGTGGTCA+TGG | - | chr1.1:23517310-23517329 | None:intergenic | 40.0% | |
| AAATGCGTGCTACAAGTGTT+TGG | + | chr1.1:23515185-23515204 | MS.gene29220:intron | 40.0% | |
| ACCTTACAAACCAGTTTCGT+AGG | - | chr1.1:23517607-23517626 | None:intergenic | 40.0% | |
| AGCAGAGTTGTCATAAAGCT+TGG | - | chr1.1:23515696-23515715 | None:intergenic | 40.0% | |
| AGGATTGAACATATTGAGCG+TGG | + | chr1.1:23517716-23517735 | MS.gene29220:intron | 40.0% | |
| AGTACAACTCAGACTCGAAA+AGG | - | chr1.1:23514749-23514768 | None:intergenic | 40.0% | |
| ATAGGTGAGAATCCAATAGC+AGG | - | chr1.1:23517266-23517285 | None:intergenic | 40.0% | |
| ATCTCTTACACGTTCATCGA+AGG | - | chr1.1:23518325-23518344 | None:intergenic | 40.0% | |
| ATGTTCAATCCTAGTCGTGA+AGG | - | chr1.1:23517708-23517727 | None:intergenic | 40.0% | |
| CAAGTTAGATGCCAAACCAA+GGG | - | chr1.1:23515368-23515387 | None:intergenic | 40.0% | |
| CACTTACAAACTAACAGGAC+TGG | + | chr1.1:23515580-23515599 | MS.gene29220:intron | 40.0% | |
| CCAATTGTGTGCTAAACACA+TGG | - | chr1.1:23515103-23515122 | None:intergenic | 40.0% | |
| CCATGTGTTTAGCACACAAT+TGG | + | chr1.1:23515100-23515119 | MS.gene29220:intron | 40.0% | |
| CCTTACAAACCAGTTTCGTA+GGG | - | chr1.1:23517606-23517625 | None:intergenic | 40.0% | |
| CTCTAATGATTCTGCATCAG+CGG | - | chr1.1:23516377-23516396 | None:intergenic | 40.0% | |
| CTGATGCAGAATCATTAGAG+AGG | + | chr1.1:23516377-23516396 | MS.gene29220:CDS | 40.0% | |
| CTTGATCAAGTCAAACTGTG+AGG | - | chr1.1:23515765-23515784 | None:intergenic | 40.0% | |
| GAAGGAAGGATTTATGCAAG+AGG | + | chr1.1:23514454-23514473 | MS.gene29220:CDS | 40.0% | |
| GCAAATTCATGACAAAACCC+TGG | - | chr1.1:23516309-23516328 | None:intergenic | 40.0% | |
| GCTAATCAAAAGCTACGCTT+TGG | - | chr1.1:23515134-23515153 | None:intergenic | 40.0% | |
| GCTTTATGACAACTCTGCTA+TGG | + | chr1.1:23515697-23515716 | MS.gene29220:CDS | 40.0% | |
| GTAAACCTAAATGCAAGCCA+TGG | - | chr1.1:23515990-23516009 | None:intergenic | 40.0% | |
| GTTAGAAAATGCTGTCCAAG+AGG | + | chr1.1:23517166-23517185 | MS.gene29220:CDS | 40.0% | |
| GTTGGTATAGTGCTTGATGA+AGG | + | chr1.1:23514652-23514671 | MS.gene29220:CDS | 40.0% | |
| TATCAACAGATGGCCTAACA+GGG | + | chr1.1:23517741-23517760 | MS.gene29220:intron | 40.0% | |
| TGCAAGACTAACAGTGTGTT+TGG | + | chr1.1:23515056-23515075 | MS.gene29220:intron | 40.0% | |
| TGCAGTATCTTGAAGCTGTT+AGG | + | chr1.1:23514503-23514522 | MS.gene29220:CDS | 40.0% | |
| TGCTATTGGATTCTCACCTA+TGG | + | chr1.1:23517265-23517284 | MS.gene29220:CDS | 40.0% | |
| TGGCAACACACAGAACTAAT+TGG | - | chr1.1:23514945-23514964 | None:intergenic | 40.0% | |
| TGTTCAATCCTAGTCGTGAA+GGG | - | chr1.1:23517707-23517726 | None:intergenic | 40.0% | |
| TTCGATGAACGTGTAAGAGA+TGG | + | chr1.1:23518324-23518343 | MS.gene29220:CDS | 40.0% | |
| TTGATTTCGGTTCCAAACCT+TGG | + | chr1.1:23515294-23515313 | MS.gene29220:intron | 40.0% | |
| TTGCCGCAATATGTCTTTCA+GGG | + | chr1.1:23516426-23516445 | MS.gene29220:CDS | 40.0% | |
| TTGTGGTCATGGAGTAGAAT+AGG | - | chr1.1:23517299-23517318 | None:intergenic | 40.0% | |
| ! | ATGTTCTGGCACAACCTTTT+CGG | - | chr1.1:23518103-23518122 | None:intergenic | 40.0% |
| ! | ATTTTCTAACAATCCCCACC+AGG | - | chr1.1:23517156-23517175 | None:intergenic | 40.0% |
| ! | GAATTCCATGGCTTGCATTT+AGG | + | chr1.1:23515982-23516001 | MS.gene29220:intron | 40.0% |
| ! | GGAATCGTTTGACTTACAGT+TGG | - | chr1.1:23515857-23515876 | None:intergenic | 40.0% |
| ! | GTACATGGCTACACTGTTTT+AGG | - | chr1.1:23517506-23517525 | None:intergenic | 40.0% |
| ! | GTTTGACTTACAGTTGGAGA+TGG | - | chr1.1:23515851-23515870 | None:intergenic | 40.0% |
| ! | TTCGCTTTCGAAGGATTTTC+AGG | + | chr1.1:23514621-23514640 | MS.gene29220:CDS | 40.0% |
| ! | TTTTCTAACAATCCCCACCA+GGG | - | chr1.1:23517155-23517174 | None:intergenic | 40.0% |
| !! | AGAATAGGAGTGTTTGCCAT+AGG | - | chr1.1:23517284-23517303 | None:intergenic | 40.0% |
| !! | AGAGTATTGAAAGCATCCGA+AGG | + | chr1.1:23515732-23515751 | MS.gene29220:CDS | 40.0% |
| !! | CTCACAGTTTGACTTGATCA+AGG | + | chr1.1:23515763-23515782 | MS.gene29220:CDS | 40.0% |
| AAACTGACAGTTCCAATCCC+TGG | + | chr1.1:23517135-23517154 | MS.gene29220:CDS | 45.0% | |
| AAGGTTGTGCCAGAACATTG+TGG | + | chr1.1:23518105-23518124 | MS.gene29220:intron | 45.0% | |
| AATACACACCCTTCACGACT+AGG | + | chr1.1:23517696-23517715 | MS.gene29220:intron | 45.0% | |
| AATCCAGCTTCTGCTTCAGA+TGG | - | chr1.1:23516334-23516353 | None:intergenic | 45.0% | |
| AATGATTCTGCATCAGCGGT+TGG | - | chr1.1:23516373-23516392 | None:intergenic | 45.0% | |
| ACAAACCAGTTTCGTAGGGT+TGG | - | chr1.1:23517602-23517621 | None:intergenic | 45.0% | |
| CAATAGCAGGCAATCCAACA+CGG | - | chr1.1:23517253-23517272 | None:intergenic | 45.0% | |
| CCTTCCTTCATCATCCACAT+GGG | - | chr1.1:23514443-23514462 | None:intergenic | 45.0% | |
| CTAACTCTACTCGGCAAAAC+CGG | + | chr1.1:23517800-23517819 | MS.gene29220:intron | 45.0% | |
| CTATCAACAGATGGCCTAAC+AGG | + | chr1.1:23517740-23517759 | MS.gene29220:intron | 45.0% | |
| CTGTTAGGCCATCTGTTGAT+AGG | - | chr1.1:23517742-23517761 | None:intergenic | 45.0% | |
| GATTTATGCAAGAGGGTCAC+AGG | + | chr1.1:23514462-23514481 | MS.gene29220:CDS | 45.0% | |
| GCAAGTTAGATGCCAAACCA+AGG | - | chr1.1:23515369-23515388 | None:intergenic | 45.0% | |
| GCAAGTTCAAATCCACGTCT+TGG | + | chr1.1:23514720-23514739 | MS.gene29220:intron | 45.0% | |
| GCTAAACACATGGTAGCACA+CGG | - | chr1.1:23515093-23515112 | None:intergenic | 45.0% | |
| GCTGTCTGCAATCATGATTG+CGG | - | chr1.1:23516032-23516051 | None:intergenic | 45.0% | |
| GGGTTGTATCCTAACCGAAA+AGG | + | chr1.1:23518086-23518105 | MS.gene29220:intron | 45.0% | |
| GTTGCCGCAATATGTCTTTC+AGG | + | chr1.1:23516425-23516444 | MS.gene29220:CDS | 45.0% | |
| TCCTTCCTTCATCATCCACA+TGG | - | chr1.1:23514444-23514463 | None:intergenic | 45.0% | |
| TCTACTCCATGACCACAATG+AGG | + | chr1.1:23517301-23517320 | MS.gene29220:CDS | 45.0% | |
| TGGAGTTCCAGCCTTCAAAA+AGG | - | chr1.1:23515831-23515850 | None:intergenic | 45.0% | |
| TTCTCCGGATGAGCATTACA+GGG | + | chr1.1:23515604-23515623 | MS.gene29220:CDS | 45.0% | |
| TTTGCTCCTGATGAGGAGAT+TGG | + | chr1.1:23514574-23514593 | MS.gene29220:CDS | 45.0% | |
| ! | GGGATTGGAACTGTCAGTTT+TGG | - | chr1.1:23517135-23517154 | None:intergenic | 45.0% |
| ! | GTTGGGATTTTCAGCCTAAG+AGG | + | chr1.1:23514536-23514555 | MS.gene29220:CDS | 45.0% |
| ! | TGATTAGCTGCATAGTGCTG+CGG | + | chr1.1:23515146-23515165 | MS.gene29220:intron | 45.0% |
| !! | AACATGGCCTTTTTGAAGGC+TGG | + | chr1.1:23515821-23515840 | MS.gene29220:CDS | 45.0% |
| !! | CAGTTTGACTTGATCAAGGC+CGG | + | chr1.1:23515767-23515786 | MS.gene29220:CDS | 45.0% |
| !! | CCCTACGAAACTGGTTTGTA+AGG | + | chr1.1:23517603-23517622 | MS.gene29220:intron | 45.0% |
| !! | CTTTCTTTTGCTGTGCACCA+GGG | + | chr1.1:23516289-23516308 | MS.gene29220:intron | 45.0% |
| !! | TCTTTCTTTTGCTGTGCACC+AGG | + | chr1.1:23516288-23516307 | MS.gene29220:intron | 45.0% |
| !! | TTTGGTGATGACTGGTTTCC+CGG | - | chr1.1:23517117-23517136 | None:intergenic | 45.0% |
| !!! | CTGTCAGTTTTGGTGATGAC+TGG | - | chr1.1:23517125-23517144 | None:intergenic | 45.0% |
| AACGCCCTGTAATGCTCATC+CGG | - | chr1.1:23515611-23515630 | None:intergenic | 50.0% | |
| AAGGCCCATGTGGATGATGA+AGG | + | chr1.1:23514436-23514455 | MS.gene29220:CDS | 50.0% | |
| ACCCACTTATCGTGTTCAGC+GGG | - | chr1.1:23514403-23514422 | None:intergenic | 50.0% | |
| CATGGGCCTTGAAAGGATCA+TGG | - | chr1.1:23514426-23514445 | None:intergenic | 50.0% | |
| CCCATGTGGATGATGAAGGA+AGG | + | chr1.1:23514440-23514459 | MS.gene29220:CDS | 50.0% | |
| CGTGTTGGATTGCCTGCTAT+TGG | + | chr1.1:23517251-23517270 | MS.gene29220:CDS | 50.0% | |
| CTTCTCCGGATGAGCATTAC+AGG | + | chr1.1:23515603-23515622 | MS.gene29220:CDS | 50.0% | |
| GAAAATGCTGTCCAAGAGGC+TGG | + | chr1.1:23517170-23517189 | MS.gene29220:CDS | 50.0% | |
| GACCCACTTATCGTGTTCAG+CGG | - | chr1.1:23514404-23514423 | None:intergenic | 50.0% | |
| GCTCTACTCTCACACTGATG+TGG | + | chr1.1:23514375-23514394 | MS.gene29220:CDS | 50.0% | |
| GTGGAAGCAGGAAAGATCTC+CGG | - | chr1.1:23517212-23517231 | None:intergenic | 50.0% | |
| GTGGGTCCATGATCCTTTCA+AGG | + | chr1.1:23514417-23514436 | MS.gene29220:CDS | 50.0% | |
| TAAAGCTTGGAGCCATGTCC+AGG | - | chr1.1:23515683-23515702 | None:intergenic | 50.0% | |
| TAACAATCCCCACCAGGGAT+TGG | - | chr1.1:23517150-23517169 | None:intergenic | 50.0% | |
| TCATCCACATGGGCCTTGAA+AGG | - | chr1.1:23514433-23514452 | None:intergenic | 50.0% | |
| TCGAAAAGGCTACCAAGACG+TGG | - | chr1.1:23514735-23514754 | None:intergenic | 50.0% | |
| TGACAGTTCCAATCCCTGGT+GGG | + | chr1.1:23517139-23517158 | MS.gene29220:CDS | 50.0% | |
| TGACCACCAATCTCCTCATC+AGG | - | chr1.1:23514583-23514602 | None:intergenic | 50.0% | |
| TGATCCTTTCAAGGCCCATG+TGG | + | chr1.1:23514426-23514445 | MS.gene29220:CDS | 50.0% | |
| TGGTGGGAAACTTGGTAAGC+CGG | + | chr1.1:23517190-23517209 | MS.gene29220:CDS | 50.0% | |
| TTTGGCCAACCCTACGAAAC+TGG | + | chr1.1:23517594-23517613 | MS.gene29220:intron | 50.0% | |
| ! | CTGGCACAACCTTTTCGGTT+AGG | - | chr1.1:23518098-23518117 | None:intergenic | 50.0% |
| ! | GAGGAGATTGGTGGTCATGA+TGG | + | chr1.1:23514586-23514605 | MS.gene29220:CDS | 50.0% |
| !! | ACTAACAGGACTGGCTTCTC+CGG | + | chr1.1:23515589-23515608 | MS.gene29220:intron | 50.0% |
| AATGCTGTCCAAGAGGCTGG+TGG | + | chr1.1:23517173-23517192 | MS.gene29220:CDS | 55.0% | |
| ACTGTGAGGCGCGAAACCTT+CGG | - | chr1.1:23515751-23515770 | None:intergenic | 55.0% | |
| AGAGGCGAATTGCCGAAGAG+TGG | + | chr1.1:23516395-23516414 | MS.gene29220:CDS | 55.0% | |
| ATCCCCTTCAGCCTTCAAGC+CGG | - | chr1.1:23515789-23515808 | None:intergenic | 55.0% | |
| ATGCTGTCCAAGAGGCTGGT+GGG | + | chr1.1:23517174-23517193 | MS.gene29220:CDS | 55.0% | |
| CAAGAGGCTGGTGGGAAACT+TGG | + | chr1.1:23517182-23517201 | MS.gene29220:CDS | 55.0% | |
| CAAGTTTCCCACCAGCCTCT+TGG | - | chr1.1:23517184-23517203 | None:intergenic | 55.0% | |
| CCCACTTATCGTGTTCAGCG+GGG | - | chr1.1:23514402-23514421 | None:intergenic | 55.0% | |
| CCCCGCTGAACACGATAAGT+GGG | + | chr1.1:23514399-23514418 | MS.gene29220:CDS | 55.0% | |
| CGGCCGCAACATTTGTAGAG+TGG | - | chr1.1:23516012-23516031 | None:intergenic | 55.0% | |
| CTGACAGTTCCAATCCCTGG+TGG | + | chr1.1:23517138-23517157 | MS.gene29220:CDS | 55.0% | |
| CTGTCTGTGCTTGATGCGTC+CGG | + | chr1.1:23517095-23517114 | MS.gene29220:CDS | 55.0% | |
| GACAGTTCCAATCCCTGGTG+GGG | + | chr1.1:23517140-23517159 | MS.gene29220:CDS | 55.0% | |
| GAGCGTGGCCTATCAACAGA+TGG | + | chr1.1:23517731-23517750 | MS.gene29220:intron | 55.0% | |
| GAGGCGAATTGCCGAAGAGT+GGG | + | chr1.1:23516396-23516415 | MS.gene29220:CDS | 55.0% | |
| GATTCTGCATCAGCGGTTGG+TGG | - | chr1.1:23516370-23516389 | None:intergenic | 55.0% | |
| GCAACTAGGTGCCCACTCTT+CGG | - | chr1.1:23516410-23516429 | None:intergenic | 55.0% | |
| GCGGAAATAGCGTGCATCTG+TGG | - | chr1.1:23517231-23517250 | None:intergenic | 55.0% | |
| GCTCCTGATGAGGAGATTGG+TGG | + | chr1.1:23514577-23514596 | MS.gene29220:CDS | 55.0% | |
| TAGCAGGCAATCCAACACGG+CGG | - | chr1.1:23517250-23517269 | None:intergenic | 55.0% | |
| TAGCGTGCATCTGTGGAAGC+AGG | - | chr1.1:23517224-23517243 | None:intergenic | 55.0% | |
| TCCCCGCTGAACACGATAAG+TGG | + | chr1.1:23514398-23514417 | MS.gene29220:CDS | 55.0% | |
| TGTCTGTGCTTGATGCGTCC+GGG | + | chr1.1:23517096-23517115 | MS.gene29220:CDS | 55.0% | |
| ! | ACAGGGCGTTCTATGCAGAG+AGG | + | chr1.1:23515621-23515640 | MS.gene29220:CDS | 55.0% |
| ! | CAGCCATCTGAAGCAGAAGC+TGG | + | chr1.1:23516328-23516347 | MS.gene29220:CDS | 55.0% |
| !! | CTCGGCAAAACCGGCTTGTA+TGG | + | chr1.1:23517809-23517828 | MS.gene29220:intron | 55.0% |
| !! | CTTGATCAAGGCCGGCTTGA+AGG | + | chr1.1:23515775-23515794 | MS.gene29220:CDS | 55.0% |
| CCTTGATCACCAGCCACCAC+GGG | - | chr1.1:23515649-23515668 | None:intergenic | 60.0% | |
| GCCTTGATCACCAGCCACCA+CGG | - | chr1.1:23515650-23515669 | None:intergenic | 60.0% | |
| GCTGGTGATCAAGGCCGTTG+GGG | + | chr1.1:23515655-23515674 | MS.gene29220:CDS | 60.0% | |
| GGCTGGTGATCAAGGCCGTT+GGG | + | chr1.1:23515654-23515673 | MS.gene29220:CDS | 60.0% | |
| TCTATGCAGAGAGGAGCCCG+TGG | + | chr1.1:23515630-23515649 | MS.gene29220:CDS | 60.0% | |
| TGGCTGGTGATCAAGGCCGT+TGG | + | chr1.1:23515653-23515672 | MS.gene29220:CDS | 60.0% | |
| ! | GCACGCTATTTCCGCCGTGT+TGG | + | chr1.1:23517236-23517255 | MS.gene29220:CDS | 60.0% |
| !! | AAGGCCGGCTTGAAGGCTGA+AGG | + | chr1.1:23515782-23515801 | MS.gene29220:CDS | 60.0% |
| !! | AGGCCGGCTTGAAGGCTGAA+GGG | + | chr1.1:23515783-23515802 | MS.gene29220:CDS | 60.0% |
| ATCAAGGCCGTTGGGGCTCC+TGG | + | chr1.1:23515662-23515681 | MS.gene29220:CDS | 65.0% | |
| ATGCAGAGAGGAGCCCGTGG+TGG | + | chr1.1:23515633-23515652 | MS.gene29220:CDS | 65.0% | |
| CCCGTGGTGGCTGGTGATCA+AGG | + | chr1.1:23515646-23515665 | MS.gene29220:CDS | 65.0% | |
| GCCATGTCCAGGAGCCCCAA+CGG | - | chr1.1:23515672-23515691 | None:intergenic | 65.0% | |
| !! | GGCCGGCTTGAAGGCTGAAG+GGG | + | chr1.1:23515784-23515803 | MS.gene29220:CDS | 65.0% |
| AGAGAGGAGCCCGTGGTGGC+TGG | + | chr1.1:23515637-23515656 | MS.gene29220:CDS | 70.0% | |
| GCCGTTGGGGCTCCTGGACA+TGG | + | chr1.1:23515668-23515687 | MS.gene29220:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 23514373 | 23518368 | 23514373 | ID=MS.gene29220 |
| chr1.1 | mRNA | 23514373 | 23518368 | 23514373 | ID=MS.gene29220.t1;Parent=MS.gene29220 |
| chr1.1 | exon | 23514373 | 23514673 | 23514373 | ID=MS.gene29220.t1.exon1;Parent=MS.gene29220.t1 |
| chr1.1 | CDS | 23514373 | 23514673 | 23514373 | ID=cds.MS.gene29220.t1;Parent=MS.gene29220.t1 |
| chr1.1 | exon | 23515597 | 23515859 | 23515597 | ID=MS.gene29220.t1.exon2;Parent=MS.gene29220.t1 |
| chr1.1 | CDS | 23515597 | 23515859 | 23515597 | ID=cds.MS.gene29220.t1;Parent=MS.gene29220.t1 |
| chr1.1 | exon | 23516310 | 23516447 | 23516310 | ID=MS.gene29220.t1.exon3;Parent=MS.gene29220.t1 |
| chr1.1 | CDS | 23516310 | 23516447 | 23516310 | ID=cds.MS.gene29220.t1;Parent=MS.gene29220.t1 |
| chr1.1 | exon | 23517074 | 23517322 | 23517074 | ID=MS.gene29220.t1.exon4;Parent=MS.gene29220.t1 |
| chr1.1 | CDS | 23517074 | 23517322 | 23517074 | ID=cds.MS.gene29220.t1;Parent=MS.gene29220.t1 |
| chr1.1 | exon | 23518255 | 23518368 | 23518255 | ID=MS.gene29220.t1.exon5;Parent=MS.gene29220.t1 |
| chr1.1 | CDS | 23518255 | 23518368 | 23518255 | ID=cds.MS.gene29220.t1;Parent=MS.gene29220.t1 |
| Gene Sequence |
| Protein sequence |
