AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29419

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29419.t1 MTR_0067s0100 97.133 279 8 0 1 279 2 280 0.0 562
MS.gene29419.t1 MTR_5g088720 60.274 292 92 6 1 271 1 289 6.20e-114 331
MS.gene29419.t1 MTR_5g088720 60.274 292 92 6 1 271 47 335 7.58e-114 332
MS.gene29419.t1 MTR_5g088720 60.274 292 92 6 1 271 6 294 8.54e-114 331
MS.gene29419.t1 MTR_1g051105 41.241 274 107 8 6 278 8 228 1.28e-55 180
MS.gene29419.t1 MTR_3g072630 34.118 255 133 7 7 234 20 266 6.62e-37 134
MS.gene29419.t1 MTR_3g072630 34.118 255 133 7 7 234 20 266 8.15e-37 134
MS.gene29419.t1 MTR_3g068005 32.830 265 123 10 1 234 1 241 3.34e-32 122
MS.gene29419.t1 MTR_6g079660 53.922 102 43 2 137 234 179 280 5.56e-32 121
MS.gene29419.t1 MTR_4g064570 35.983 239 120 8 6 234 11 226 6.84e-32 121
MS.gene29419.t1 MTR_2g097620 33.984 256 116 8 2 234 9 234 3.73e-31 119
MS.gene29419.t1 MTR_3g083480 27.859 341 157 14 5 270 7 333 2.68e-29 114
MS.gene29419.t1 MTR_1g114320 29.921 254 156 9 7 250 13 254 1.71e-28 111
MS.gene29419.t1 MTR_5g080350 60.563 71 28 0 164 234 168 238 8.80e-26 105
MS.gene29419.t1 MTR_2g007340 60.938 64 25 0 170 233 182 245 9.07e-24 98.6
MS.gene29419.t1 MTR_7g074170 36.134 119 68 3 137 247 289 407 1.68e-19 88.2
MS.gene29419.t1 MTR_1g114620 45.977 87 45 1 148 234 225 309 7.53e-19 85.1
MS.gene29419.t1 MTR_6g032960 40.000 140 68 7 143 272 189 322 2.14e-18 84.0
MS.gene29419.t1 MTR_5g041330 44.318 88 45 2 148 234 66 150 4.31e-18 81.3
MS.gene29419.t1 MTR_5g041310 43.182 88 46 2 148 234 76 160 4.46e-18 81.3
MS.gene29419.t1 MTR_1g014710 29.299 157 95 5 101 243 133 287 9.20e-17 79.0
MS.gene29419.t1 MTR_4g110100 29.333 150 97 5 87 234 263 405 2.15e-15 75.9
MS.gene29419.t1 MTR_5g058530 50.847 59 28 1 176 233 210 268 1.75e-14 72.8
MS.gene29419.t1 MTR_3g088080 37.500 80 45 2 158 234 6 83 4.36e-13 63.9
MS.gene29419.t1 MTR_7g059360 33.333 87 54 2 153 235 119 205 7.12e-12 64.3
MS.gene29419.t1 MTR_3g025510 30.693 101 70 0 130 230 46 146 7.90e-12 62.4
MS.gene29419.t1 MTR_6g016350 34.884 86 54 2 150 234 272 356 1.19e-11 64.7
MS.gene29419.t1 MTR_3g087900 34.483 87 55 2 171 256 52 137 2.27e-11 61.2
MS.gene29419.t1 MTR_3g025380 31.250 80 55 0 151 230 56 135 5.77e-11 59.7
MS.gene29419.t1 MTR_3g031000 32.039 103 58 3 136 234 247 341 7.31e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29419.t1 AT2G40830 43.377 302 117 11 2 271 3 282 2.18e-64 205
MS.gene29419.t1 AT2G40830 43.377 302 117 11 2 271 3 282 2.18e-64 205
MS.gene29419.t1 AT2G40830 43.377 302 117 11 2 271 3 282 2.18e-64 205
MS.gene29419.t1 AT2G40830 43.377 302 117 11 2 271 3 282 2.18e-64 205
MS.gene29419.t1 AT3G56580 43.836 292 114 9 2 271 3 266 1.12e-63 202
MS.gene29419.t1 AT3G56580 43.836 292 114 9 2 271 3 266 1.12e-63 202
MS.gene29419.t1 AT3G56580 43.836 292 114 9 2 271 3 266 1.12e-63 202
MS.gene29419.t1 AT3G19950 30.389 283 177 10 7 271 21 301 8.27e-38 136
MS.gene29419.t1 AT3G19950 30.389 283 177 10 7 271 79 359 2.23e-37 136
MS.gene29419.t1 AT3G19950 30.389 283 177 10 7 271 79 359 2.23e-37 136
MS.gene29419.t1 AT4G26400 29.674 337 157 12 5 269 3 331 6.63e-35 129
MS.gene29419.t1 AT4G26400 29.674 337 157 12 5 269 3 331 6.63e-35 129
MS.gene29419.t1 AT3G10815 47.015 134 50 3 148 279 78 192 2.21e-34 123
MS.gene29419.t1 AT3G46620 30.242 248 137 6 6 234 30 260 8.03e-31 119
MS.gene29419.t1 AT1G60360 29.720 286 179 9 7 272 24 307 6.38e-30 115
MS.gene29419.t1 AT1G55530 29.150 247 136 8 7 234 9 235 8.39e-27 106
MS.gene29419.t1 AT1G55530 27.985 268 145 9 7 234 9 268 5.09e-26 105
MS.gene29419.t1 AT1G55530 27.985 268 145 9 7 234 9 268 5.09e-26 105
MS.gene29419.t1 AT5G59550 45.455 110 50 2 143 242 145 254 5.29e-26 106
MS.gene29419.t1 AT5G56340 36.420 162 68 4 137 270 209 363 6.08e-26 105
MS.gene29419.t1 AT5G59550 45.455 110 50 2 143 242 250 359 1.08e-25 106
MS.gene29419.t1 AT2G39720 52.885 104 38 3 142 234 143 246 2.23e-25 104
MS.gene29419.t1 AT2G39720 52.885 104 38 3 142 234 143 246 2.23e-25 104
MS.gene29419.t1 AT3G13430 42.000 100 50 2 139 234 175 270 1.08e-22 95.5
MS.gene29419.t1 AT3G13430 42.000 100 50 2 139 234 175 270 1.08e-22 95.5
MS.gene29419.t1 AT3G13430 42.000 100 50 2 139 234 175 270 1.08e-22 95.5
MS.gene29419.t1 AT3G13430 42.000 100 50 2 139 234 175 270 1.08e-22 95.5
MS.gene29419.t1 AT1G68180 39.516 124 71 2 149 271 98 218 1.93e-22 93.2
MS.gene29419.t1 AT5G01980 40.708 113 60 2 137 242 295 407 6.04e-22 95.5
MS.gene29419.t1 AT5G20910 38.095 105 60 2 144 243 180 284 6.16e-19 85.1
MS.gene29419.t1 AT2G44330 53.521 71 27 1 170 234 71 141 1.42e-17 79.0
MS.gene29419.t1 AT3G60080 48.052 77 32 1 170 238 142 218 2.86e-17 80.5
MS.gene29419.t1 AT1G14200 36.283 113 68 2 124 234 44 154 6.77e-17 77.0
MS.gene29419.t1 AT5G15820 43.038 79 44 1 157 234 258 336 1.74e-16 78.6
MS.gene29419.t1 AT1G26800 42.169 83 44 1 155 237 83 161 1.89e-16 76.3
MS.gene29419.t1 AT3G02340 36.458 96 59 2 140 234 286 380 6.52e-16 77.4
MS.gene29419.t1 AT3G02340 36.458 96 59 2 140 234 286 380 6.52e-16 77.4
MS.gene29419.t1 AT5G60820 34.906 106 65 1 133 234 312 417 1.45e-15 76.6
MS.gene29419.t1 AT5G08139 36.937 111 58 5 133 234 247 354 1.69e-14 73.2
MS.gene29419.t1 AT5G64920 41.429 70 41 0 164 233 232 301 7.13e-14 71.2
MS.gene29419.t1 AT2G44578 47.368 57 29 1 184 239 65 121 4.71e-12 62.8
MS.gene29419.t1 AT2G44581 46.667 60 31 1 177 235 58 117 9.97e-12 62.0
MS.gene29419.t1 AT3G63530 36.667 90 50 2 148 233 155 241 2.61e-11 62.8
MS.gene29419.t1 AT3G63530 36.667 90 50 2 148 233 155 241 2.61e-11 62.8
MS.gene29419.t1 AT1G18780 31.061 132 74 6 115 234 196 322 6.92e-11 62.4

Find 73 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATCTTTCTATACAAAT+TGG 0.226745 3.3:-31476415 None:intergenic
ATGGACGTGGTAGTCGAAAT+TGG 0.260747 3.3:+31476554 MS.gene29419:CDS
GTCAGAAGAAGATCTGTTTC+TGG 0.278583 3.3:+31476136 MS.gene29419:CDS
GATCATAGGCGCTCTGATTT+TGG 0.287542 3.3:+31476244 MS.gene29419:CDS
AGAGGTTCTGTACCAAGAAT+TGG 0.309620 3.3:+31476049 MS.gene29419:CDS
ACGCAGCCAATCTTGCTTGC+AGG 0.339377 3.3:+31475884 MS.gene29419:CDS
AAGATTTGAACTCGGCTCTA+AGG 0.350121 3.3:+31476429 MS.gene29419:CDS
ATGTGCTTGTGTGATCTTAA+TGG 0.358030 3.3:-31476371 None:intergenic
TTCTGTTCCTGAACAGACTT+GGG 0.365372 3.3:+31476159 MS.gene29419:CDS
GCATCTCTAAACCCAATTCT+TGG 0.367507 3.3:-31476061 None:intergenic
TCCCTCCCTGCAAGCAAGAT+TGG 0.373236 3.3:-31475890 None:intergenic
GTTCTGTTCCTGAACAGACT+TGG 0.377775 3.3:+31476158 MS.gene29419:CDS
TGTATAGCATCGAAAATATC+AGG 0.379466 3.3:-31476010 None:intergenic
TGGACGTGGTAGTCGAAATT+GGG 0.379594 3.3:+31476555 MS.gene29419:CDS
AGTACTGGTCAAAACAATAA+TGG 0.392816 3.3:+31476595 MS.gene29419:CDS
TCTTCTGACATCAAAGTTTG+TGG 0.397858 3.3:-31476122 None:intergenic
TGTCAAGGAGAGCAACATTC+TGG 0.399266 3.3:+31475849 MS.gene29419:CDS
AGAACGAAATGGCCACAAAA+AGG 0.405744 3.3:-31476641 None:intergenic
GAGGTTCTGTACCAAGAATT+GGG 0.412921 3.3:+31476050 MS.gene29419:CDS
CGGCTCTAAGGCAAGGGAAA+TGG 0.417056 3.3:+31476441 MS.gene29419:CDS
GGTCGTTATTTAATATTTCA+AGG 0.426693 3.3:+31476199 MS.gene29419:CDS
TCAATGATTAGTATTTGAAT+TGG 0.428413 3.3:-31476665 None:intergenic
AAAACACCCCAAGTCTGTTC+AGG 0.436514 3.3:-31476166 None:intergenic
GAAGATCGTGAGGCCGGGGC+TGG 0.441156 3.3:-31476331 None:intergenic
GGAAGCTCAACACGGCAAAC+AGG 0.443011 3.3:-31476526 None:intergenic
ACTCAGACTGCATTGTTCCT+TGG 0.451088 3.3:+31476482 MS.gene29419:CDS
CGCAGCCAATCTTGCTTGCA+GGG 0.454896 3.3:+31475885 MS.gene29419:CDS
CGTGTTGAGCTTCCGCCTCA+TGG 0.473836 3.3:+31476535 MS.gene29419:CDS
TCAATTGAAGATCGTGAGGC+CGG 0.478607 3.3:-31476337 None:intergenic
TTTGAATTGGAAGAACGAAA+TGG 0.479669 3.3:-31476652 None:intergenic
GCCAATCTTGCTTGCAGGGA+GGG 0.486811 3.3:+31475889 MS.gene29419:CDS
CAATTGAAGATCGTGAGGCC+GGG 0.489376 3.3:-31476336 None:intergenic
CTACCTCTAGAGGTGATCAT+AGG 0.500049 3.3:+31476230 MS.gene29419:CDS
GGTGGCTACTTTATGGATCA+CGG 0.507619 3.3:+31476265 MS.gene29419:CDS
ACAAATCCTCCATCGCAGTA+AGG 0.508538 3.3:-31475923 None:intergenic
GGAAGGAATGGCAATAGTAC+TGG 0.515587 3.3:+31476580 MS.gene29419:CDS
TAGTTACATGAGGCAGAGAA+TGG 0.521893 3.3:+31476090 MS.gene29419:CDS
AAAATGGATTTCTCCTTCCT+CGG 0.526678 3.3:-31476618 None:intergenic
GCAGTTTGCCCTTACTGCGA+TGG 0.532835 3.3:+31475914 MS.gene29419:CDS
ACAAATTGGACAATGTGAAT+CGG 0.536227 3.3:-31476401 None:intergenic
TACATGAGGCAGAGAATGGA+TGG 0.536380 3.3:+31476094 MS.gene29419:CDS
AATTGAAGATCGTGAGGCCG+GGG 0.540826 3.3:-31476335 None:intergenic
CAAATCCTCCATCGCAGTAA+GGG 0.544283 3.3:-31475922 None:intergenic
ACTTGCATCGTCATCACAGT+TGG 0.546615 3.3:+31475970 MS.gene29419:CDS
CATGCTGTTGTAAGTCAAAG+AGG 0.548595 3.3:+31476031 MS.gene29419:CDS
CGAAATTGGGGAGGAAGGAA+TGG 0.550846 3.3:+31476568 MS.gene29419:CDS
GAGCTTCCGCCTCATGGACG+TGG 0.556833 3.3:+31476541 MS.gene29419:CDS
TTGAACTCGGCTCTAAGGCA+AGG 0.563629 3.3:+31476434 MS.gene29419:CDS
GTTTGCCCTTACTGCGATGG+AGG 0.563964 3.3:+31475917 MS.gene29419:CDS
AAACACTCGTGGTCCAGCCC+CGG 0.566850 3.3:+31476318 MS.gene29419:CDS
AAAACAATAATGGCCGAGGA+AGG 0.581703 3.3:+31476605 MS.gene29419:CDS
GTAGTCGAAATTGGGGAGGA+AGG 0.591965 3.3:+31476563 MS.gene29419:CDS
GGTCAAAACAATAATGGCCG+AGG 0.593224 3.3:+31476601 MS.gene29419:CDS
TGCTTCAATTGAAGATCGTG+AGG 0.596957 3.3:-31476341 None:intergenic
CTATGATCACCTCTAGAGGT+AGG 0.604277 3.3:-31476229 None:intergenic
CGACTACCACGTCCATGAGG+CGG 0.618242 3.3:-31476547 None:intergenic
AGCCAATCTTGCTTGCAGGG+AGG 0.618796 3.3:+31475888 MS.gene29419:CDS
GTGAAGGAGAAATAATGTCA+AGG 0.623077 3.3:+31475834 None:intergenic
TGTATAGAAAGATTTGAACT+CGG 0.625011 3.3:+31476421 MS.gene29419:CDS
GGTCAAACACCTACCTCTAG+AGG 0.627382 3.3:+31476220 MS.gene29419:CDS
GGACGTGGTAGTCGAAATTG+GGG 0.636262 3.3:+31476556 MS.gene29419:CDS
TGAACTCGGCTCTAAGGCAA+GGG 0.639396 3.3:+31476435 MS.gene29419:CDS
TCTGTTCCTGAACAGACTTG+GGG 0.643196 3.3:+31476160 MS.gene29419:CDS
AAGGAACAATGCAGTCTGAG+TGG 0.654795 3.3:-31476480 None:intergenic
CAAGAAATTCATGAGAATCG+AGG 0.661918 3.3:+31475947 MS.gene29419:CDS
CATGAGGCGGAAGCTCAACA+CGG 0.662432 3.3:-31476534 None:intergenic
GCGCCTATGATCACCTCTAG+AGG 0.663521 3.3:-31476233 None:intergenic
CGTGGTAGTCGAAATTGGGG+AGG 0.667418 3.3:+31476559 MS.gene29419:CDS
ATGCTATTGATAGTTACATG+AGG 0.671620 3.3:+31476080 MS.gene29419:CDS
CAACTCAATACAAACACTCG+TGG 0.681335 3.3:+31476307 MS.gene29419:CDS
GAATTATGCTGAATTAACCA+AGG 0.687405 3.3:-31476499 None:intergenic
GCTTGTGTGATCTTAATGGT+AGG 0.695857 3.3:-31476367 None:intergenic
TTTCGACTACCACGTCCATG+AGG 0.706639 3.3:-31476550 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAATCTTTCTATACAAAT+TGG - chr3.3:31476418-31476437 None:intergenic 20.0%
!! TCAATGATTAGTATTTGAAT+TGG - chr3.3:31476668-31476687 None:intergenic 20.0%
! GGTCGTTATTTAATATTTCA+AGG + chr3.3:31476199-31476218 MS.gene29419:CDS 25.0%
! TGTATAGAAAGATTTGAACT+CGG + chr3.3:31476421-31476440 MS.gene29419:CDS 25.0%
ACAAATTGGACAATGTGAAT+CGG - chr3.3:31476404-31476423 None:intergenic 30.0%
GAATTATGCTGAATTAACCA+AGG - chr3.3:31476502-31476521 None:intergenic 30.0%
TTTGAATTGGAAGAACGAAA+TGG - chr3.3:31476655-31476674 None:intergenic 30.0%
! ATGCTATTGATAGTTACATG+AGG + chr3.3:31476080-31476099 MS.gene29419:CDS 30.0%
! GAAATCCATTTTCCTTTTTG+TGG + chr3.3:31476629-31476648 MS.gene29419:CDS 30.0%
! TGTATAGCATCGAAAATATC+AGG - chr3.3:31476013-31476032 None:intergenic 30.0%
!! AGTACTGGTCAAAACAATAA+TGG + chr3.3:31476595-31476614 MS.gene29419:CDS 30.0%
AATGGCCACAAAAAGGAAAA+TGG - chr3.3:31476637-31476656 None:intergenic 35.0%
ATGTGCTTGTGTGATCTTAA+TGG - chr3.3:31476374-31476393 None:intergenic 35.0%
CAAGAAATTCATGAGAATCG+AGG + chr3.3:31475947-31475966 MS.gene29419:CDS 35.0%
TCTTCTGACATCAAAGTTTG+TGG - chr3.3:31476125-31476144 None:intergenic 35.0%
! AAAATGGATTTCTCCTTCCT+CGG - chr3.3:31476621-31476640 None:intergenic 35.0%
!! TGATTTTGGTGGCTACTTTA+TGG + chr3.3:31476258-31476277 MS.gene29419:CDS 35.0%
AAAACAATAATGGCCGAGGA+AGG + chr3.3:31476605-31476624 MS.gene29419:CDS 40.0%
AAGATTTGAACTCGGCTCTA+AGG + chr3.3:31476429-31476448 MS.gene29419:CDS 40.0%
AGAACGAAATGGCCACAAAA+AGG - chr3.3:31476644-31476663 None:intergenic 40.0%
AGAGGTTCTGTACCAAGAAT+TGG + chr3.3:31476049-31476068 MS.gene29419:CDS 40.0%
CAACTCAATACAAACACTCG+TGG + chr3.3:31476307-31476326 MS.gene29419:CDS 40.0%
CATGCTGTTGTAAGTCAAAG+AGG + chr3.3:31476031-31476050 MS.gene29419:CDS 40.0%
GAGGTTCTGTACCAAGAATT+GGG + chr3.3:31476050-31476069 MS.gene29419:CDS 40.0%
GCATCTCTAAACCCAATTCT+TGG - chr3.3:31476064-31476083 None:intergenic 40.0%
GCTTGTGTGATCTTAATGGT+AGG - chr3.3:31476370-31476389 None:intergenic 40.0%
GTCAGAAGAAGATCTGTTTC+TGG + chr3.3:31476136-31476155 MS.gene29419:CDS 40.0%
TAGTTACATGAGGCAGAGAA+TGG + chr3.3:31476090-31476109 MS.gene29419:CDS 40.0%
TGCTTCAATTGAAGATCGTG+AGG - chr3.3:31476344-31476363 None:intergenic 40.0%
TTCTGTTCCTGAACAGACTT+GGG + chr3.3:31476159-31476178 MS.gene29419:CDS 40.0%
!!! TGGGGTGTTTTTAGTTCTTC+TGG + chr3.3:31476178-31476197 MS.gene29419:CDS 40.0%
AAAACACCCCAAGTCTGTTC+AGG - chr3.3:31476169-31476188 None:intergenic 45.0%
AAGGAACAATGCAGTCTGAG+TGG - chr3.3:31476483-31476502 None:intergenic 45.0%
ACAAATCCTCCATCGCAGTA+AGG - chr3.3:31475926-31475945 None:intergenic 45.0%
ACTCAGACTGCATTGTTCCT+TGG + chr3.3:31476482-31476501 MS.gene29419:CDS 45.0%
ACTTGCATCGTCATCACAGT+TGG + chr3.3:31475970-31475989 MS.gene29419:CDS 45.0%
ATGGACGTGGTAGTCGAAAT+TGG + chr3.3:31476554-31476573 MS.gene29419:CDS 45.0%
CAAATCCTCCATCGCAGTAA+GGG - chr3.3:31475925-31475944 None:intergenic 45.0%
GGAAGGAATGGCAATAGTAC+TGG + chr3.3:31476580-31476599 MS.gene29419:CDS 45.0%
GGTCAAAACAATAATGGCCG+AGG + chr3.3:31476601-31476620 MS.gene29419:CDS 45.0%
GTTCTGTTCCTGAACAGACT+TGG + chr3.3:31476158-31476177 MS.gene29419:CDS 45.0%
TACATGAGGCAGAGAATGGA+TGG + chr3.3:31476094-31476113 MS.gene29419:CDS 45.0%
TCAATTGAAGATCGTGAGGC+CGG - chr3.3:31476340-31476359 None:intergenic 45.0%
TCTGTTCCTGAACAGACTTG+GGG + chr3.3:31476160-31476179 MS.gene29419:CDS 45.0%
TGGACGTGGTAGTCGAAATT+GGG + chr3.3:31476555-31476574 MS.gene29419:CDS 45.0%
TGTCAAGGAGAGCAACATTC+TGG + chr3.3:31475849-31475868 MS.gene29419:CDS 45.0%
! CTACCTCTAGAGGTGATCAT+AGG + chr3.3:31476230-31476249 MS.gene29419:CDS 45.0%
! CTATGATCACCTCTAGAGGT+AGG - chr3.3:31476232-31476251 None:intergenic 45.0%
! GATCATAGGCGCTCTGATTT+TGG + chr3.3:31476244-31476263 MS.gene29419:CDS 45.0%
! GGTGGCTACTTTATGGATCA+CGG + chr3.3:31476265-31476284 MS.gene29419:CDS 45.0%
AATTGAAGATCGTGAGGCCG+GGG - chr3.3:31476338-31476357 None:intergenic 50.0%
CAATTGAAGATCGTGAGGCC+GGG - chr3.3:31476339-31476358 None:intergenic 50.0%
CGAAATTGGGGAGGAAGGAA+TGG + chr3.3:31476568-31476587 MS.gene29419:CDS 50.0%
GGACGTGGTAGTCGAAATTG+GGG + chr3.3:31476556-31476575 MS.gene29419:CDS 50.0%
GGTCAAACACCTACCTCTAG+AGG + chr3.3:31476220-31476239 MS.gene29419:CDS 50.0%
GTAGTCGAAATTGGGGAGGA+AGG + chr3.3:31476563-31476582 MS.gene29419:CDS 50.0%
TTTCGACTACCACGTCCATG+AGG - chr3.3:31476553-31476572 None:intergenic 50.0%
! CATAGGCGCTCTGATTTTGG+TGG + chr3.3:31476247-31476266 MS.gene29419:CDS 50.0%
!! TGAACTCGGCTCTAAGGCAA+GGG + chr3.3:31476435-31476454 MS.gene29419:CDS 50.0%
!! TTGAACTCGGCTCTAAGGCA+AGG + chr3.3:31476434-31476453 MS.gene29419:CDS 50.0%
ACGCAGCCAATCTTGCTTGC+AGG + chr3.3:31475884-31475903 MS.gene29419:CDS 55.0%
AGCCAATCTTGCTTGCAGGG+AGG + chr3.3:31475888-31475907 MS.gene29419:CDS 55.0%
CATGAGGCGGAAGCTCAACA+CGG - chr3.3:31476537-31476556 None:intergenic 55.0%
CGCAGCCAATCTTGCTTGCA+GGG + chr3.3:31475885-31475904 MS.gene29419:CDS 55.0%
CGTGGTAGTCGAAATTGGGG+AGG + chr3.3:31476559-31476578 MS.gene29419:CDS 55.0%
GCAGTTTGCCCTTACTGCGA+TGG + chr3.3:31475914-31475933 MS.gene29419:CDS 55.0%
GCCAATCTTGCTTGCAGGGA+GGG + chr3.3:31475889-31475908 MS.gene29419:CDS 55.0%
GCGCCTATGATCACCTCTAG+AGG - chr3.3:31476236-31476255 None:intergenic 55.0%
GGAAGCTCAACACGGCAAAC+AGG - chr3.3:31476529-31476548 None:intergenic 55.0%
GTTTGCCCTTACTGCGATGG+AGG + chr3.3:31475917-31475936 MS.gene29419:CDS 55.0%
TCCCTCCCTGCAAGCAAGAT+TGG - chr3.3:31475893-31475912 None:intergenic 55.0%
!! CGGCTCTAAGGCAAGGGAAA+TGG + chr3.3:31476441-31476460 MS.gene29419:CDS 55.0%
AAACACTCGTGGTCCAGCCC+CGG + chr3.3:31476318-31476337 MS.gene29419:CDS 60.0%
CGACTACCACGTCCATGAGG+CGG - chr3.3:31476550-31476569 None:intergenic 60.0%
CGTGTTGAGCTTCCGCCTCA+TGG + chr3.3:31476535-31476554 MS.gene29419:CDS 60.0%
GAGCTTCCGCCTCATGGACG+TGG + chr3.3:31476541-31476560 MS.gene29419:CDS 65.0%
GAAGATCGTGAGGCCGGGGC+TGG - chr3.3:31476334-31476353 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 31475848 31476687 31475848 ID=MS.gene29419
chr3.3 mRNA 31475848 31476687 31475848 ID=MS.gene29419.t1;Parent=MS.gene29419
chr3.3 exon 31475848 31476687 31475848 ID=MS.gene29419.t1.exon1;Parent=MS.gene29419.t1
chr3.3 CDS 31475848 31476687 31475848 ID=cds.MS.gene29419.t1;Parent=MS.gene29419.t1
Gene Sequence

>MS.gene29419

ATGTCAAGGAGAGCAACATTCTGGTGTCATACATGCACGCAGCCAATCTTGCTTGCAGGGAGGGATGCAGTTTGCCCTTACTGCGATGGAGGATTTGTGCAAGAAATTCATGAGAATCGAGGACTTGCATCGTCATCACAGTTGGAAGAGTTTCAAGATGATCCTGATATTTTCGATGCTATACATGCTGTTGTAAGTCAAAGAGGTTCTGTACCAAGAATTGGGTTTAGAGATGCTATTGATAGTTACATGAGGCAGAGAATGGATGGAAGAGCCACAAACTTTGATGTCAGAAGAAGATCTGTTTCTGGTTCTGTTCCTGAACAGACTTGGGGTGTTTTTAGTTCTTCTGGTCGTTATTTAATATTTCAAGGTCAAACACCTACCTCTAGAGGTGATCATAGGCGCTCTGATTTTGGTGGCTACTTTATGGATCACGGACTAGATGAACTTATCGAACAACTCAATACAAACACTCGTGGTCCAGCCCCGGCCTCACGATCTTCAATTGAAGCAATGCCTACCATTAAGATCACACAAGCACATCTTCACTCCGATTCACATTGTCCAATTTGTATAGAAAGATTTGAACTCGGCTCTAAGGCAAGGGAAATGGCATGTAAGCATATTTACCACTCAGACTGCATTGTTCCTTGGTTAATTCAGCATAATTCATGTCCTGTTTGCCGTGTTGAGCTTCCGCCTCATGGACGTGGTAGTCGAAATTGGGGAGGAAGGAATGGCAATAGTACTGGTCAAAACAATAATGGCCGAGGAAGGAGAAATCCATTTTCCTTTTTGTGGCCATTTCGTTCTTCCAATTCAAATACTAATCATTGA
Protein sequence

>MS.gene29419.t1

MSRRATFWCHTCTQPILLAGRDAVCPYCDGGFVQEIHENRGLASSSQLEEFQDDPDIFDAIHAVVSQRGSVPRIGFRDAIDSYMRQRMDGRATNFDVRRRSVSGSVPEQTWGVFSSSGRYLIFQGQTPTSRGDHRRSDFGGYFMDHGLDELIEQLNTNTRGPAPASRSSIEAMPTIKITQAHLHSDSHCPICIERFELGSKAREMACKHIYHSDCIVPWLIQHNSCPVCRVELPPHGRGSRNWGGRNGNSTGQNNNGRGRRNPFSFLWPFRSSNSNTNH