AlfalfaGEDB | MS.gene29980

M. sativa cultivar XinJiangDaYe / MS.gene29980

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29980.t1	XP_013448225.1	93.3	283	17	1	2	284	1	281	2.90E-150	541.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene29980.t1	A0A072TXT8	93.3	283	17	1	2	284	1	281	2.1e-150	541.2

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050504	MS.gene29980	0.800629	1.32E-48	-1.69E-46
MS.gene050612	MS.gene29980	0.808001	3.84E-50	-1.69E-46
MS.gene050868	MS.gene29980	0.812485	4.14E-51	-1.69E-46
MS.gene050871	MS.gene29980	0.811699	6.14E-51	-1.69E-46
MS.gene053916	MS.gene29980	0.802044	6.76E-49	-1.69E-46
MS.gene054408	MS.gene29980	0.802965	4.37E-49	-1.69E-46
MS.gene055748	MS.gene29980	0.858724	6.77E-63	-1.69E-46
MS.gene055750	MS.gene29980	0.822969	1.78E-53	-1.69E-46
MS.gene055751	MS.gene29980	0.844933	5.56E-59	-1.69E-46
MS.gene05589	MS.gene29980	0.818579	1.82E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 63 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGGGTGAATGTCCTTA+AGG	0.462624	7.1:-60739232	None:intergenic
AAATGTGCCTCTCTTACACC+AGG	0.613144	7.1:+60740231	MS.gene29980:CDS
AAGAAAGACATCCCATACCA+GGG	0.713555	7.1:-60742592	None:intergenic
AATATTATCATTTAAGATGG+TGG	0.550164	7.1:-60740182	None:intergenic
AATGAAACAGCTTACCACAA+TGG	0.675586	7.1:-60742801	None:intergenic
ACAACCGATTCAACCACCCT+CGG	0.647096	7.1:+60739041	MS.gene29980:CDS
ACATGTTTCAGCGAATACCC+TGG	0.690583	7.1:+60742575	MS.gene29980:intron
ACTCTGGTTACAATTTATTT+TGG	0.161036	7.1:+60739914	MS.gene29980:CDS
AGAATCAAATTGCACCCGTT+TGG	0.413328	7.1:+60740272	MS.gene29980:CDS
AGCATGGAAGCCATGCCTTA+AGG	0.467672	7.1:+60739217	MS.gene29980:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTAGCTCAATGAGTT+AGG	-	chr7.1:60741858-60741877	None:intergenic	30.0%
AAAGTTAGCTCAATGAGTTA+GGG	-	chr7.1:60741857-60741876	None:intergenic	30.0%
ACAACAAAACCATGATTTGA+AGG	-	chr7.1:60740497-60740516	None:intergenic	30.0%
AGAAGTAGCAATTATGCAAA+TGG	-	chr7.1:60740541-60740560	None:intergenic	30.0%
ATAAATTGTAACCAGAGTGA+AGG	-	chr7.1:60739912-60739931	None:intergenic	30.0%
ATACCAGTAGCTAATCTAAT+AGG	+	chr7.1:60741146-60741165	MS.gene29980:intron	30.0%
GGGATTAATTTATCAAGCTA+TGG	+	chr7.1:60740764-60740783	MS.gene29980:intron	30.0%
GGTAAGACAATTGATGAATT+TGG	+	chr7.1:60741215-60741234	MS.gene29980:intron	30.0%
TGAAAAATGTAACTCCAAAC+GGG	-	chr7.1:60740289-60740308	None:intergenic	30.0%
TTGGAAAATTATCCTTCATG+TGG	+	chr7.1:60741987-60742006	MS.gene29980:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	60739022	60742808	60739022	ID=MS.gene29980
chr7.1	mRNA	60739022	60742808	60739022	ID=MS.gene29980.t1;Parent=MS.gene29980
chr7.1	exon	60739022	60739354	60739022	ID=MS.gene29980.t1.exon1;Parent=MS.gene29980.t1
chr7.1	CDS	60739022	60739354	60739022	ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1
chr7.1	exon	60739904	60739937	60739904	ID=MS.gene29980.t1.exon2;Parent=MS.gene29980.t1
chr7.1	CDS	60739904	60739937	60739904	ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1
chr7.1	exon	60740130	60740321	60740130	ID=MS.gene29980.t1.exon3;Parent=MS.gene29980.t1
chr7.1	CDS	60740130	60740321	60740130	ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1
chr7.1	exon	60740979	60741068	60740979	ID=MS.gene29980.t1.exon4;Parent=MS.gene29980.t1
chr7.1	CDS	60740979	60741068	60740979	ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1
chr7.1	exon	60742447	60742512	60742447	ID=MS.gene29980.t1.exon5;Parent=MS.gene29980.t1
chr7.1	CDS	60742447	60742512	60742447	ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1
chr7.1	exon	60742586	60742677	60742586	ID=MS.gene29980.t1.exon6;Parent=MS.gene29980.t1
chr7.1	CDS	60742586	60742677	60742586	ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1
chr7.1	exon	60742761	60742808	60742761	ID=MS.gene29980.t1.exon7;Parent=MS.gene29980.t1
chr7.1	CDS	60742761	60742808	60742761	ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1

Gene Sequence

>MS.gene29980

GAGGATGCAACTGGACAATACAACCGATTCAACCACCCTCGGTTATTGGTTAAACTGGAGGGTCTATCTTTGCGTAGTTCCTGTTTTGCTGTCTATGGTCCTTGCATGTCTAACAATATGGAAGCGTGAAAGGTCAAGGAATCTCACATTTGACTACGGAGAAAACCAGCAAGACAGTACTTTGTGTGGCGATGAAGCATGGAAGCCATGCCTTAAGGACATTCACCCTGTTTGTTTGCTAGCTTTTCGAGTTATCTCATTCTCTTCTCTTTTGGCATCACTAATTGCCAAAATCCATGTCAGTCATGGCACAATATTTTACTATTACACTCAGTGAGTATTTCTGTTTTGTTATCAATATATCTTTATGAACTCGATTTATTTGTGGGTCCTGTCATACTTATTGTGGTGCCATAGATTTGGTGAGCTAGTAGTTATTTTTCTAAGTTGGTGATTTAAAGATGTACTAGTGAACCAACATTACGTTGGTCAGAGTGGAACTAAACTTGGATCCCTTAATCAAAGTCTCGGGTTCAGTCCTTGTAGATGGAAAATACATGGTTGGCAAGGGAGGCCTCACTAAAGGTGGCCAGTATAGTTCTCCGACTGAGATTAGTAATCGGCGAAGCCGGTGGATACTTTAAATCAGTGATATGGTTACAAACAAAAATGATGTACTAGTTAATGAACAAATTCTTCTCCTTTAAGCATTATAATTGAATCCAAATCTATTTAGAATTTTGAAGCTGTCTTAGTTTTTCTCAGTTTCGTTTCAATGACTTCCATTTCTTTGACATTTGTTTCAAACTTTTAGTTTCAAATTTTTTGCCATTTGATTGATAAATTGTGATTGTGAACTCTCTTATTTTGGATTTCTTCTAGGTGGACCTTCACTCTGGTTACAATTTATTTTGGGGTATGTCTCTTGATTCTCCCTGGAAGCCTTGCCTTGGATCGAACCAATCCTATTCATATATCACATTTAGCGACTTTGTGATGTTTTTCACGTTTAAAAATACAGTAGTCAGTAAAAGGTTAACAGGAAATTTAATTTCTGAAGTCTTGATTGACATATTTATGTCTCACAATTCGAACTTTCTTTTTGTAGTGTGCATCTGTGCTATCAGTGTATGGGTGTTGTATGTATAGAAAATCAACATCCACCATCTTAAATGATAATATTGCAAGAATAGATGCAGAGCAAGGTCCAAATGTGCCTCTCTTACACCAGGATGCCACAGACATACAGAAGAATCAAATTGCACCCGTTTGGAGTTACATTTTTCAAATTTTATTCCAGGTATTAACTACAATTAAATAGAAAAACACGGACCTGGGGCTTATTGCATTTCGGGAAATTTAGTCTTTTGCTTTCCCTTATATTTGTTTGTTTCTTTAACGTTTGTGAGTGTTCTATCCATCTTCTATCTTCTATTTTTTTTTATTGCTTTGTATCTTGCATTTTCTTAGCTCCTTCAAATCATGGTTTTGTTGTGCTTGTTCACTTATGTTAATTCCATTTGCATAATTGCTACTTCTTCCATCCATAATCTTTAGTCTTTTAAGCTTTTTATTTCTGTCCCAAATTTTTTTGTTTTATGAAACCAAGATATAATTGAACATGATTTTTCTTATTTTTACTCTTAGAAGAATCACTGTCATGCATTAGATGAATTAAAGGTAAATGAGTGTATATTTGTGTAAATTTATTATTTCTTTAAGGATCAAAGAGCATAGATGGAGGGATTAATTTATCAAGCTATGGTGCATGAAGACTGTGTTTTGGACCTATTTGAATGAAAAATCAGATAATTTTGCATGTTAATGATGTTCAGCTGAATACTTGAACTTTACATACTTTATGGATAATTTCTAGAATTTAACATCGGTCTGCACTGATTACAATATTGCATTACTGTTCCTTGATTTTAATATGTTTTATTATGTATTTTAACAGATTAGTGCAGGAGCAGTCATGCTTACGGATTGCGTTTATTGGCTCATTATTTTTCCATTTCTTACCCTGAGAGATTATGATTTAAACTTTGTGAGTAGCAATTTTAAATATTTTCATACTTATACTCTCTTGCTACGTGCTGCATATTAAATGTTTCTTAAGTTTCTATACCAGTAGCTAATCTAATAGGTGACATATACTTAGACTGTTATGAAGGCTACAACTTGAGGCTAAATGGTAAGACAATTGATGAATTTGGATTTGTTACCATCACAAATTCCCCGCATTCACGCAGTCAGTGCATCGGTGACCTTTGGATCAAGATCGGATGGTCATGATTTCAAGCTTGGTATTTTACAATTTAGAAAAGAAAAATCAAAATTTACTGCTGCTAGATATCGATCAATAATCACGGATGTGCTGACTGCGTGAATTTTTGACTGTACCAAATTCAAATCTTCTAGTAGATATGTTCAATAAAATTAGGTCAAGGTTACTAAATTTTAAAGGAAGAACTTGTCGAAGTTCGCTTTTGTATCGAGAGTTAGTAAGATAGTGGGTGTTGTGGTTGTAAGAATCCAAGAGTTCATGTTTAATTGTATTATGATGATTTAGGATACTGTGTATTTCATGTTTATCAACTAAAGCATTTTATTTGCGATGTACGTTTATTATTGCATTCTAAGGCATATCTACTGTGCAACTGAAATCGATATGATCTGCTTTGACTTGAGGCATTAAAATGAGGTCTTTGGATCAATATACATGATCTGACATTGCATTTGAATCCTTACATATAGATACTTATTTTTTCTTCCATGAAGATCAATAATTTGAAAGGGAAGATTGCAAGTCATATATCTTAGTGTGGATGACCCTAACTCATTGAGCTAACTTTTGTCATCAAGTTAGGTACAGATTCAAATTCTAAGATAGTACCAGAGTCTCGTTGTTGGCTTCCCTCACCGTCCACGCTCTAGGCTCATCGGGTCAAAGCGTGAGAAACTGTTGGAAAATTATCCTTCATGTGGCAACCCTGCCATCTGTTATTGAGATAGTTAATTTTCATTCATTCCCATGGTACAACACCTTTATTGTGCTGGCTGAGTAAGTAGGTAAGGTTCAGTCCAATGTCGTGTATAGATATGGTCATTGGAGTGCTTAGAAGGCTTAGGCGGTTCTCACCTTCACCAATTTTTCATGGATGAGTTATGATGTGTGCTCGAATCATAAGAATAATCAATATTAGTATACTTGTAAAATTTGATATTGGTGGCATATCGTCTCAGGAATAATCGACGTGTTGCCCAACATGACCCTCTGTCTCAGTATTCTAAATTTTAAATTTATCAACAACTTATAAGGTAGATTCATCAAATTGATATATGATATTCTTTGGTTTTAACATAACTGATTTCTATGACAGTCTCTTCTATATTTCCCCCTCATTTTTCTCCTCCTTGTGTAGATGACAGTGAACATGCATACACTAAATTTAGTTTTGCTCTTCGGCGATGCAGCTTTAAATTGCTTGGTAAATATTTTGATGACCTCAAATCTTCATTCAGAATAATTGCAAAAACTGATGTTTAACCTACATGTTTCAGCGAATACCCTGGTATGGGATGTCTTTCTTCGTGTTATGGACAGGTGTATATGTCATTTTTCAGTGGATAATTCATGCTTGCGTCTCGATTTGGTAATTTATGCTATATTTTTGCATGTCAAATTTTGGACACACAATTGGTTAACTAAATATGGTAACTGTACTCAATCTGACAGGTGGCCTTACCCATTTCTTGATTTGTCATCCCTGTATGCACCATTGTG

Protein sequence

>MS.gene29980.t1

EDATGQYNRFNHPRLLVKLEGLSLRSSCFAVYGPCMSNNMEAUKVKESHIULRRKPARQYFVWRUSMEAMPUGHSPCLFASFSSYLILFSFGITNCQNPCQSWHNILLLHSVDLHSGYNLFWVCICAISVWVLYVUKINIHHLKUUYCKNRCRARSKCASLTPGCHRHTEESNCTRLELHFSNFIPDUCRSSHAYGLRLLAHYFSISYPERLUFKLYDSEHAYTKFSFALRRCSFKLLANTLVWDVFLRVMDRCICHFSVDNSCLRLDLVALPISUFVIPVCTIV