Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29980.t1 | XP_013448225.1 | 93.3 | 283 | 17 | 1 | 2 | 284 | 1 | 281 | 2.90E-150 | 541.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29980.t1 | A0A072TXT8 | 93.3 | 283 | 17 | 1 | 2 | 284 | 1 | 281 | 2.1e-150 | 541.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050504 | MS.gene29980 | 0.800629 | 1.32E-48 | -1.69E-46 |
| MS.gene050612 | MS.gene29980 | 0.808001 | 3.84E-50 | -1.69E-46 |
| MS.gene050868 | MS.gene29980 | 0.812485 | 4.14E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene29980 | 0.811699 | 6.14E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene29980 | 0.802044 | 6.76E-49 | -1.69E-46 |
| MS.gene054408 | MS.gene29980 | 0.802965 | 4.37E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene29980 | 0.858724 | 6.77E-63 | -1.69E-46 |
| MS.gene055750 | MS.gene29980 | 0.822969 | 1.78E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene29980 | 0.844933 | 5.56E-59 | -1.69E-46 |
| MS.gene05589 | MS.gene29980 | 0.818579 | 1.82E-52 | -1.69E-46 |
| MS.gene056446 | MS.gene29980 | 0.820037 | 8.47E-53 | -1.69E-46 |
| MS.gene056504 | MS.gene29980 | 0.811095 | 8.31E-51 | -1.69E-46 |
| MS.gene05753 | MS.gene29980 | 0.832643 | 8.41E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene29980 | 0.802945 | 4.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCTGGTTACAATTTATTT+TGG | 0.161036 | 7.1:+60739914 | MS.gene29980:CDS |
| TATCTCATTCTCTTCTCTTT+TGG | 0.217017 | 7.1:+60739274 | MS.gene29980:CDS |
| ATTCAACCACCCTCGGTTAT+TGG | 0.234236 | 7.1:+60739048 | MS.gene29980:CDS |
| TGCTTACGGATTGCGTTTAT+TGG | 0.249358 | 7.1:+60740998 | MS.gene29980:CDS |
| GCCATGACTGACATGGATTT+TGG | 0.268633 | 7.1:-60739309 | None:intergenic |
| CCCTCGGTTATTGGTTAAAC+TGG | 0.287613 | 7.1:+60739057 | MS.gene29980:CDS |
| GGATGTCTTTCTTCGTGTTA+TGG | 0.300943 | 7.1:+60742602 | MS.gene29980:CDS |
| TCCTTGCATGTCTAACAATA+TGG | 0.334556 | 7.1:+60739120 | MS.gene29980:CDS |
| TTCATGCTTGCGTCTCGATT+TGG | 0.344110 | 7.1:+60742656 | MS.gene29980:CDS |
| CACACAAAGTACTGTCTTGC+TGG | 0.374893 | 7.1:-60739187 | None:intergenic |
| AGGGATGACAAATCAAGAAA+TGG | 0.390581 | 7.1:-60742771 | None:intergenic |
| GCATCTGTGCTATCAGTGTA+TGG | 0.396063 | 7.1:+60740133 | MS.gene29980:CDS |
| TGCAATATTATCATTTAAGA+TGG | 0.402260 | 7.1:-60740185 | None:intergenic |
| CGAAAAGCTAGCAAACAAAC+AGG | 0.409282 | 7.1:-60739248 | None:intergenic |
| AGAATCAAATTGCACCCGTT+TGG | 0.413328 | 7.1:+60740272 | MS.gene29980:CDS |
| TTCTATCAGGAGGATGCAAC+TGG | 0.419089 | 7.1:+60739013 | None:intergenic |
| AGTTTAAATCATAATCTCTC+AGG | 0.419431 | 7.1:-60741044 | None:intergenic |
| CGATGCAGCTTTAAATTGCT+TGG | 0.420651 | 7.1:+60742491 | MS.gene29980:CDS |
| TGGTGTAAGAGAGGCACATT+TGG | 0.433186 | 7.1:-60740229 | None:intergenic |
| TAATCTCTCAGGGTAAGAAA+TGG | 0.438837 | 7.1:-60741033 | None:intergenic |
| TCTGTATGTCTGTGGCATCC+TGG | 0.446287 | 7.1:-60740249 | None:intergenic |
| AGGACCATAGACAGCAAAAC+AGG | 0.451528 | 7.1:-60739101 | None:intergenic |
| CTTACCACAATGGTGCATAC+AGG | 0.459742 | 7.1:-60742791 | None:intergenic |
| AAACAGGGTGAATGTCCTTA+AGG | 0.462624 | 7.1:-60739232 | None:intergenic |
| AGCATGGAAGCCATGCCTTA+AGG | 0.467672 | 7.1:+60739217 | MS.gene29980:CDS |
| TCTTTCTTCGTGTTATGGAC+AGG | 0.468641 | 7.1:+60742607 | MS.gene29980:CDS |
| TTCTAGGTGGACCTTCACTC+TGG | 0.473579 | 7.1:+60739898 | MS.gene29980:intron |
| TTTCAGCGAATACCCTGGTA+TGG | 0.484094 | 7.1:+60742580 | MS.gene29980:intron |
| GGGATGACAAATCAAGAAAT+GGG | 0.499566 | 7.1:-60742770 | None:intergenic |
| TGCAGGAGCAGTCATGCTTA+CGG | 0.503796 | 7.1:+60740984 | MS.gene29980:CDS |
| ATAACCGAGGGTGGTTGAAT+CGG | 0.515580 | 7.1:-60739045 | None:intergenic |
| GCCAAAATCCATGTCAGTCA+TGG | 0.515953 | 7.1:+60739308 | MS.gene29980:CDS |
| GAAGAAAGACATCCCATACC+AGG | 0.534737 | 7.1:-60742593 | None:intergenic |
| TAACAATATGGAAGCGTGAA+AGG | 0.543017 | 7.1:+60739132 | MS.gene29980:CDS |
| TTGATTCTTCTGTATGTCTG+TGG | 0.544759 | 7.1:-60740257 | None:intergenic |
| AATATTATCATTTAAGATGG+TGG | 0.550164 | 7.1:-60740182 | None:intergenic |
| CGGTTATTGGTTAAACTGGA+GGG | 0.553318 | 7.1:+60739061 | MS.gene29980:CDS |
| GACAAATCAAGAAATGGGTA+AGG | 0.560272 | 7.1:-60742765 | None:intergenic |
| TATGGAAGCGTGAAAGGTCA+AGG | 0.570808 | 7.1:+60739138 | MS.gene29980:CDS |
| TCGGTTATTGGTTAAACTGG+AGG | 0.575070 | 7.1:+60739060 | MS.gene29980:CDS |
| CTTTGTGTGGCGATGAAGCA+TGG | 0.575967 | 7.1:+60739201 | MS.gene29980:CDS |
| CATCTGTGCTATCAGTGTAT+GGG | 0.585564 | 7.1:+60740134 | MS.gene29980:CDS |
| TTACCACAATGGTGCATACA+GGG | 0.592551 | 7.1:-60742790 | None:intergenic |
| TCCATATTGTTAGACATGCA+AGG | 0.594278 | 7.1:-60739121 | None:intergenic |
| ATAAATTGTAACCAGAGTGA+AGG | 0.603687 | 7.1:-60739909 | None:intergenic |
| TTCAGCGAATACCCTGGTAT+GGG | 0.609846 | 7.1:+60742581 | MS.gene29980:intron |
| AAATGTGCCTCTCTTACACC+AGG | 0.613144 | 7.1:+60740231 | MS.gene29980:CDS |
| GTTTAAATCATAATCTCTCA+GGG | 0.614875 | 7.1:-60741043 | None:intergenic |
| AGGAATCTCACATTTGACTA+CGG | 0.615194 | 7.1:+60739158 | MS.gene29980:CDS |
| GGGTGAATGTCCTTAAGGCA+TGG | 0.618152 | 7.1:-60739227 | None:intergenic |
| GTGGCATCCTGGTGTAAGAG+AGG | 0.622055 | 7.1:-60740238 | None:intergenic |
| GCAAGAATAGATGCAGAGCA+AGG | 0.644774 | 7.1:+60740205 | MS.gene29980:CDS |
| ACAACCGATTCAACCACCCT+CGG | 0.647096 | 7.1:+60739041 | MS.gene29980:CDS |
| TCCAGTTTAACCAATAACCG+AGG | 0.651660 | 7.1:-60739058 | None:intergenic |
| CCAGTTTAACCAATAACCGA+GGG | 0.655736 | 7.1:-60739057 | None:intergenic |
| GTTTAACCAATAACCGAGGG+TGG | 0.656189 | 7.1:-60739054 | None:intergenic |
| CAGCAAGACAGTACTTTGTG+TGG | 0.666072 | 7.1:+60739188 | MS.gene29980:CDS |
| AATGAAACAGCTTACCACAA+TGG | 0.675586 | 7.1:-60742801 | None:intergenic |
| CATCCCTGTATGCACCATTG+TGG | 0.676095 | 7.1:+60742787 | MS.gene29980:CDS |
| GAAAAGCTAGCAAACAAACA+GGG | 0.684484 | 7.1:-60739247 | None:intergenic |
| ACATGTTTCAGCGAATACCC+TGG | 0.690583 | 7.1:+60742575 | MS.gene29980:intron |
| ATATTGTGCCATGACTGACA+TGG | 0.701794 | 7.1:-60739316 | None:intergenic |
| AAGAAAGACATCCCATACCA+GGG | 0.713555 | 7.1:-60742592 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAACATATTAAAATCA+AGG | - | chr7.1:60740945-60740964 | None:intergenic | 10.0% |
| !! | TTCATAAAACAAAAAAATTT+GGG | - | chr7.1:60740605-60740624 | None:intergenic | 10.0% |
| !! | TTTCATAAAACAAAAAAATT+TGG | - | chr7.1:60740606-60740625 | None:intergenic | 10.0% |
| !!! | GTAAATTTATTATTTCTTTA+AGG | + | chr7.1:60740722-60740741 | MS.gene29980:intron | 10.0% |
| !! | AAAATAAGTATCTATATGTA+AGG | - | chr7.1:60741770-60741789 | None:intergenic | 15.0% |
| !! | AAAGAAACAAACAAATATAA+GGG | - | chr7.1:60740399-60740418 | None:intergenic | 15.0% |
| !! | AAATTTATCAACAACTTATA+AGG | + | chr7.1:60742321-60742340 | MS.gene29980:intron | 15.0% |
| !! | AATTGATATATGATATTCTT+TGG | + | chr7.1:60742355-60742374 | MS.gene29980:intron | 15.0% |
| !! | ATACTTGTAAAATTTGATAT+TGG | + | chr7.1:60742229-60742248 | MS.gene29980:intron | 15.0% |
| !! | TAAAGAAACAAACAAATATA+AGG | - | chr7.1:60740400-60740419 | None:intergenic | 15.0% |
| !! | TAATTGTATTATGATGATTT+AGG | + | chr7.1:60741572-60741591 | MS.gene29980:intron | 15.0% |
| !! | TACAATTAAATAGAAAAACA+CGG | + | chr7.1:60740330-60740349 | MS.gene29980:intron | 15.0% |
| !! | TAGATATGTTCAATAAAATT+AGG | + | chr7.1:60741443-60741462 | MS.gene29980:intron | 15.0% |
| !! | TTCAAAATTCTAAATAGATT+TGG | - | chr7.1:60739747-60739766 | None:intergenic | 15.0% |
| !!! | TAATTTCTAGAATTTAACAT+CGG | + | chr7.1:60740888-60740907 | MS.gene29980:intron | 15.0% |
| !! | AAAAAATAGAAGATAGAAGA+TGG | - | chr7.1:60740442-60740461 | None:intergenic | 20.0% |
| !! | AATCATGTTCAATTATATCT+TGG | - | chr7.1:60740629-60740648 | None:intergenic | 20.0% |
| !! | ATCACAATTTATCAATCAAA+TGG | - | chr7.1:60739853-60739872 | None:intergenic | 20.0% |
| !! | ATGAAGATCAATAATTTGAA+AGG | + | chr7.1:60741797-60741816 | MS.gene29980:intron | 20.0% |
| !! | ATTTAATTGTAGTTAATACC+TGG | - | chr7.1:60740321-60740340 | None:intergenic | 20.0% |
| !! | GATTCAATTATAATGCTTAA+AGG | - | chr7.1:60739725-60739744 | None:intergenic | 20.0% |
| !! | TGAAGATCAATAATTTGAAA+GGG | + | chr7.1:60741798-60741817 | MS.gene29980:intron | 20.0% |
| !! | TGCAATATTATCATTTAAGA+TGG | - | chr7.1:60740188-60740207 | None:intergenic | 20.0% |
| !! | TTTCAAATTATTGATCTTCA+TGG | - | chr7.1:60741798-60741817 | None:intergenic | 20.0% |
| !!! | AATATTATCATTTAAGATGG+TGG | - | chr7.1:60740185-60740204 | None:intergenic | 20.0% |
| !!! | ATCTGATTTTTCATTCAAAT+AGG | - | chr7.1:60740812-60740831 | None:intergenic | 20.0% |
| !!! | CATTTTTCAAATTTTATTCC+AGG | + | chr7.1:60740300-60740319 | MS.gene29980:CDS | 20.0% |
| !!! | TAGTAGTTATTTTTCTAAGT+TGG | + | chr7.1:60739450-60739469 | MS.gene29980:intron | 20.0% |
| !!! | TATTTTTGCATGTCAAATTT+TGG | + | chr7.1:60742691-60742710 | MS.gene29980:intron | 20.0% |
| !!! | TCAAGGTTACTAAATTTTAA+AGG | + | chr7.1:60741466-60741485 | MS.gene29980:intron | 20.0% |
| ! | AAAAGACTAAAGATTATGGA+TGG | - | chr7.1:60740565-60740584 | None:intergenic | 25.0% |
| ! | AAAATACAGTAGTCAGTAAA+AGG | + | chr7.1:60740034-60740053 | MS.gene29980:intron | 25.0% |
| ! | ACGTTTATTATTGCATTCTA+AGG | + | chr7.1:60741643-60741662 | MS.gene29980:intron | 25.0% |
| ! | AGTTTAAATCATAATCTCTC+AGG | - | chr7.1:60741047-60741066 | None:intergenic | 25.0% |
| ! | ATAACTCATCCATGAAAAAT+TGG | - | chr7.1:60742172-60742191 | None:intergenic | 25.0% |
| ! | ATATACTTAGACTGTTATGA+AGG | + | chr7.1:60741173-60741192 | MS.gene29980:intron | 25.0% |
| ! | ATGTGATATATGAATAGGAT+TGG | - | chr7.1:60739984-60740003 | None:intergenic | 25.0% |
| ! | CACAATTGGTTAACTAAATA+TGG | + | chr7.1:60742717-60742736 | MS.gene29980:intron | 25.0% |
| ! | CTTGAACTTTACATACTTTA+TGG | + | chr7.1:60740864-60740883 | MS.gene29980:intron | 25.0% |
| ! | CTTGTAAAATTTGATATTGG+TGG | + | chr7.1:60742232-60742251 | MS.gene29980:intron | 25.0% |
| ! | GATACTTTAAATCAGTGATA+TGG | + | chr7.1:60739656-60739675 | MS.gene29980:intron | 25.0% |
| ! | GCTAAATGTGATATATGAAT+AGG | - | chr7.1:60739989-60740008 | None:intergenic | 25.0% |
| ! | GCTTAAAAGACTAAAGATTA+TGG | - | chr7.1:60740569-60740588 | None:intergenic | 25.0% |
| ! | GTTTAAATCATAATCTCTCA+GGG | - | chr7.1:60741046-60741065 | None:intergenic | 25.0% |
| ! | TACAATTAAACATGAACTCT+TGG | - | chr7.1:60741560-60741579 | None:intergenic | 25.0% |
| ! | TAGATATCGATCAATAATCA+CGG | + | chr7.1:60741371-60741390 | MS.gene29980:intron | 25.0% |
| ! | TATGAACTCGATTTATTTGT+GGG | + | chr7.1:60739388-60739407 | MS.gene29980:intron | 25.0% |
| ! | TCATGCATTAGATGAATTAA+AGG | + | chr7.1:60740680-60740699 | MS.gene29980:intron | 25.0% |
| ! | TCTACTAGAAGATTTGAATT+TGG | - | chr7.1:60741427-60741446 | None:intergenic | 25.0% |
| ! | TGAAACAAATGTCAAAGAAA+TGG | - | chr7.1:60739807-60739826 | None:intergenic | 25.0% |
| ! | TGTTCAATAAAATTAGGTCA+AGG | + | chr7.1:60741449-60741468 | MS.gene29980:intron | 25.0% |
| ! | TTAACTATCTCAATAACAGA+TGG | - | chr7.1:60742021-60742040 | None:intergenic | 25.0% |
| ! | TTATGAACTCGATTTATTTG+TGG | + | chr7.1:60739387-60739406 | MS.gene29980:intron | 25.0% |
| ! | TTATTCTGAATGAAGATTTG+AGG | - | chr7.1:60742532-60742551 | None:intergenic | 25.0% |
| ! | TTGAAAAATGTAACTCCAAA+CGG | - | chr7.1:60740290-60740309 | None:intergenic | 25.0% |
| !! | ACTCTGGTTACAATTTATTT+TGG | + | chr7.1:60739914-60739933 | MS.gene29980:CDS | 25.0% |
| !! | TTAATTTTCATTCATTCCCA+TGG | + | chr7.1:60742037-60742056 | MS.gene29980:intron | 25.0% |
| !!! | CTAAATTTAGTTTTGCTCTT+CGG | + | chr7.1:60742468-60742487 | MS.gene29980:CDS | 25.0% |
| !!! | CTCTGGTTACAATTTATTTT+GGG | + | chr7.1:60739915-60739934 | MS.gene29980:CDS | 25.0% |
| !!! | TCTGGTTACAATTTATTTTG+GGG | + | chr7.1:60739916-60739935 | MS.gene29980:CDS | 25.0% |
| !!! | TCTTATTTTGGATTTCTTCT+AGG | + | chr7.1:60739882-60739901 | MS.gene29980:intron | 25.0% |
| AAAAGTTAGCTCAATGAGTT+AGG | - | chr7.1:60741858-60741877 | None:intergenic | 30.0% | |
| AAAGTTAGCTCAATGAGTTA+GGG | - | chr7.1:60741857-60741876 | None:intergenic | 30.0% | |
| ACAACAAAACCATGATTTGA+AGG | - | chr7.1:60740497-60740516 | None:intergenic | 30.0% | |
| AGAAGTAGCAATTATGCAAA+TGG | - | chr7.1:60740541-60740560 | None:intergenic | 30.0% | |
| ATAAATTGTAACCAGAGTGA+AGG | - | chr7.1:60739912-60739931 | None:intergenic | 30.0% | |
| ATACCAGTAGCTAATCTAAT+AGG | + | chr7.1:60741146-60741165 | MS.gene29980:intron | 30.0% | |
| GGGATTAATTTATCAAGCTA+TGG | + | chr7.1:60740764-60740783 | MS.gene29980:intron | 30.0% | |
| GGTAAGACAATTGATGAATT+TGG | + | chr7.1:60741215-60741234 | MS.gene29980:intron | 30.0% | |
| TGAAAAATGTAACTCCAAAC+GGG | - | chr7.1:60740289-60740308 | None:intergenic | 30.0% | |
| TTGGAAAATTATCCTTCATG+TGG | + | chr7.1:60741987-60742006 | MS.gene29980:intron | 30.0% | |
| ! | AATTTAGAATACTGAGACAG+AGG | - | chr7.1:60742299-60742318 | None:intergenic | 30.0% |
| ! | ATTTAGAATACTGAGACAGA+GGG | - | chr7.1:60742298-60742317 | None:intergenic | 30.0% |
| ! | CTAACTTTTGTCATCAAGTT+AGG | + | chr7.1:60741869-60741888 | MS.gene29980:intron | 30.0% |
| ! | TATCTCATTCTCTTCTCTTT+TGG | + | chr7.1:60739274-60739293 | MS.gene29980:CDS | 30.0% |
| ! | TCAAATTTTGGACACACAAT+TGG | + | chr7.1:60742703-60742722 | MS.gene29980:intron | 30.0% |
| !! | GATTGTGAACTCTCTTATTT+TGG | + | chr7.1:60739870-60739889 | MS.gene29980:intron | 30.0% |
| !! | TATTTTGGATTTCTTCTAGG+TGG | + | chr7.1:60739885-60739904 | MS.gene29980:intron | 30.0% |
| !!! | GTATTTTAACAGATTAGTGC+AGG | + | chr7.1:60740967-60740986 | MS.gene29980:intron | 30.0% |
| !!! | GTGTATATGTCATTTTTCAG+TGG | + | chr7.1:60742629-60742648 | MS.gene29980:CDS | 30.0% |
| AAATAGAAAAACACGGACCT+GGG | + | chr7.1:60740337-60740356 | MS.gene29980:intron | 35.0% | |
| ACCATATCTATACACGACAT+TGG | - | chr7.1:60742109-60742128 | None:intergenic | 35.0% | |
| AGGAATCTCACATTTGACTA+CGG | + | chr7.1:60739158-60739177 | MS.gene29980:CDS | 35.0% | |
| AGGCATTAAAATGAGGTCTT+TGG | + | chr7.1:60741711-60741730 | MS.gene29980:intron | 35.0% | |
| AGGGATGACAAATCAAGAAA+TGG | - | chr7.1:60742774-60742793 | None:intergenic | 35.0% | |
| ATCGAGAGTTAGTAAGATAG+TGG | + | chr7.1:60741515-60741534 | MS.gene29980:intron | 35.0% | |
| CATCCATGAAAAATTGGTGA+AGG | - | chr7.1:60742166-60742185 | None:intergenic | 35.0% | |
| CCTTGTAGATGGAAAATACA+TGG | + | chr7.1:60739560-60739579 | MS.gene29980:intron | 35.0% | |
| GAAAAGCTAGCAAACAAACA+GGG | - | chr7.1:60739250-60739269 | None:intergenic | 35.0% | |
| GACAAATCAAGAAATGGGTA+AGG | - | chr7.1:60742768-60742787 | None:intergenic | 35.0% | |
| GCAAGTCATATATCTTAGTG+TGG | + | chr7.1:60741827-60741846 | MS.gene29980:intron | 35.0% | |
| GGGATGACAAATCAAGAAAT+GGG | - | chr7.1:60742773-60742792 | None:intergenic | 35.0% | |
| GTAGATGGAAAATACATGGT+TGG | + | chr7.1:60739564-60739583 | MS.gene29980:intron | 35.0% | |
| GTAGTCAGTAAAAGGTTAAC+AGG | + | chr7.1:60740042-60740061 | MS.gene29980:intron | 35.0% | |
| TAAATAGAAAAACACGGACC+TGG | + | chr7.1:60740336-60740355 | MS.gene29980:intron | 35.0% | |
| TAATCTCTCAGGGTAAGAAA+TGG | - | chr7.1:60741036-60741055 | None:intergenic | 35.0% | |
| TATCTCAATAACAGATGGCA+GGG | - | chr7.1:60742016-60742035 | None:intergenic | 35.0% | |
| TCCAATGTCGTGTATAGATA+TGG | + | chr7.1:60742105-60742124 | MS.gene29980:intron | 35.0% | |
| TCCATATTGTTAGACATGCA+AGG | - | chr7.1:60739124-60739143 | None:intergenic | 35.0% | |
| TCCTTGCATGTCTAACAATA+TGG | + | chr7.1:60739120-60739139 | MS.gene29980:CDS | 35.0% | |
| TCGAGAGTTAGTAAGATAGT+GGG | + | chr7.1:60741516-60741535 | MS.gene29980:intron | 35.0% | |
| TCGTGTATAGATATGGTCAT+TGG | + | chr7.1:60742112-60742131 | MS.gene29980:intron | 35.0% | |
| TTCTTAGCTCCTTCAAATCA+TGG | + | chr7.1:60740485-60740504 | MS.gene29980:intron | 35.0% | |
| TTGATTCTTCTGTATGTCTG+TGG | - | chr7.1:60740260-60740279 | None:intergenic | 35.0% | |
| ! | CCATGTATTTTCCATCTACA+AGG | - | chr7.1:60739563-60739582 | None:intergenic | 35.0% |
| ! | TAACAATATGGAAGCGTGAA+AGG | + | chr7.1:60739132-60739151 | MS.gene29980:CDS | 35.0% |
| ! | TAAGGATCAAAGAGCATAGA+TGG | + | chr7.1:60740740-60740759 | MS.gene29980:intron | 35.0% |
| ! | TCACCTATTAGATTAGCTAC+TGG | - | chr7.1:60741152-60741171 | None:intergenic | 35.0% |
| ! | TCACCTTCACCAATTTTTCA+TGG | + | chr7.1:60742160-60742179 | MS.gene29980:intron | 35.0% |
| ! | TGACTTGAGGCATTAAAATG+AGG | + | chr7.1:60741704-60741723 | MS.gene29980:intron | 35.0% |
| !! | ACAATAAAGGTGTTGTACCA+TGG | - | chr7.1:60742057-60742076 | None:intergenic | 35.0% |
| !! | ATATGATCTGCTTTGACTTG+AGG | + | chr7.1:60741691-60741710 | MS.gene29980:intron | 35.0% |
| !! | CAATAAAGGTGTTGTACCAT+GGG | - | chr7.1:60742056-60742075 | None:intergenic | 35.0% |
| !! | CACTGATTTAAAGTATCCAC+CGG | - | chr7.1:60739653-60739672 | None:intergenic | 35.0% |
| !! | TTATTGTGGTGCCATAGATT+TGG | + | chr7.1:60739422-60739441 | MS.gene29980:intron | 35.0% |
| AAACAGGGTGAATGTCCTTA+AGG | - | chr7.1:60739235-60739254 | None:intergenic | 40.0% | |
| AAGAAAGACATCCCATACCA+GGG | - | chr7.1:60742595-60742614 | None:intergenic | 40.0% | |
| AATAGAAAAACACGGACCTG+GGG | + | chr7.1:60740338-60740357 | MS.gene29980:intron | 40.0% | |
| ACAAGGAGGAGAAAAATGAG+GGG | - | chr7.1:60742423-60742442 | None:intergenic | 40.0% | |
| ACACAAGGAGGAGAAAAATG+AGG | - | chr7.1:60742425-60742444 | None:intergenic | 40.0% | |
| AGAATCAAATTGCACCCGTT+TGG | + | chr7.1:60740272-60740291 | MS.gene29980:CDS | 40.0% | |
| ATATTGTGCCATGACTGACA+TGG | - | chr7.1:60739319-60739338 | None:intergenic | 40.0% | |
| CACAAGGAGGAGAAAAATGA+GGG | - | chr7.1:60742424-60742443 | None:intergenic | 40.0% | |
| CATCTGTGCTATCAGTGTAT+GGG | + | chr7.1:60740134-60740153 | MS.gene29980:CDS | 40.0% | |
| CCAGTTTAACCAATAACCGA+GGG | - | chr7.1:60739060-60739079 | None:intergenic | 40.0% | |
| CGAAAAGCTAGCAAACAAAC+AGG | - | chr7.1:60739251-60739270 | None:intergenic | 40.0% | |
| CTACTAGCTCACCAAATCTA+TGG | - | chr7.1:60739436-60739455 | None:intergenic | 40.0% | |
| CTAGTGAACCAACATTACGT+TGG | + | chr7.1:60739488-60739507 | MS.gene29980:intron | 40.0% | |
| CTATCTCAATAACAGATGGC+AGG | - | chr7.1:60742017-60742036 | None:intergenic | 40.0% | |
| CTCCGACTGAGATTAGTAAT+CGG | + | chr7.1:60739622-60739641 | MS.gene29980:intron | 40.0% | |
| GAACCCGAGACTTTGATTAA+GGG | - | chr7.1:60739537-60739556 | None:intergenic | 40.0% | |
| GATCCCTTAATCAAAGTCTC+GGG | + | chr7.1:60739531-60739550 | MS.gene29980:intron | 40.0% | |
| GATGGTCATGATTTCAAGCT+TGG | + | chr7.1:60741306-60741325 | MS.gene29980:intron | 40.0% | |
| GGAAAATACATGGTTGGCAA+GGG | + | chr7.1:60739570-60739589 | MS.gene29980:intron | 40.0% | |
| GGATCCCTTAATCAAAGTCT+CGG | + | chr7.1:60739530-60739549 | MS.gene29980:intron | 40.0% | |
| GGATGTCTTTCTTCGTGTTA+TGG | + | chr7.1:60742602-60742621 | MS.gene29980:CDS | 40.0% | |
| GTAACTGTACTCAATCTGAC+AGG | + | chr7.1:60742739-60742758 | MS.gene29980:intron | 40.0% | |
| GTACAACACCTTTATTGTGC+TGG | + | chr7.1:60742059-60742078 | MS.gene29980:intron | 40.0% | |
| GTTATGAAGGCTACAACTTG+AGG | + | chr7.1:60741186-60741205 | MS.gene29980:intron | 40.0% | |
| TCCAGTTTAACCAATAACCG+AGG | - | chr7.1:60739061-60739080 | None:intergenic | 40.0% | |
| TCTTTCTTCGTGTTATGGAC+AGG | + | chr7.1:60742607-60742626 | MS.gene29980:CDS | 40.0% | |
| TGAACCCGAGACTTTGATTA+AGG | - | chr7.1:60739538-60739557 | None:intergenic | 40.0% | |
| TGGAAAATACATGGTTGGCA+AGG | + | chr7.1:60739569-60739588 | MS.gene29980:intron | 40.0% | |
| TGTTCACTGTCATCTACACA+AGG | - | chr7.1:60742440-60742459 | None:intergenic | 40.0% | |
| TTACTCAGCCAGCACAATAA+AGG | - | chr7.1:60742070-60742089 | None:intergenic | 40.0% | |
| ! | CGGTTATTGGTTAAACTGGA+GGG | + | chr7.1:60739061-60739080 | MS.gene29980:CDS | 40.0% |
| ! | GATCAAAGAGCATAGATGGA+GGG | + | chr7.1:60740744-60740763 | MS.gene29980:intron | 40.0% |
| ! | TCGGTTATTGGTTAAACTGG+AGG | + | chr7.1:60739060-60739079 | MS.gene29980:CDS | 40.0% |
| ! | TGCTTACGGATTGCGTTTAT+TGG | + | chr7.1:60740998-60741017 | MS.gene29980:CDS | 40.0% |
| !! | AATAGGATTGGTTCGATCCA+AGG | - | chr7.1:60739972-60739991 | None:intergenic | 40.0% |
| !! | AGTTCCTGTTTTGCTGTCTA+TGG | + | chr7.1:60739097-60739116 | MS.gene29980:CDS | 40.0% |
| !! | CGATGCAGCTTTAAATTGCT+TGG | + | chr7.1:60742491-60742510 | MS.gene29980:CDS | 40.0% |
| !! | TAGTAAGATAGTGGGTGTTG+TGG | + | chr7.1:60741524-60741543 | MS.gene29980:intron | 40.0% |
| AAATACATGGTTGGCAAGGG+AGG | + | chr7.1:60739573-60739592 | MS.gene29980:intron | 45.0% | |
| AAATGTGCCTCTCTTACACC+AGG | + | chr7.1:60740231-60740250 | MS.gene29980:CDS | 45.0% | |
| ACATGTTTCAGCGAATACCC+TGG | + | chr7.1:60742575-60742594 | MS.gene29980:intron | 45.0% | |
| ACCATCCGATCTTGATCCAA+AGG | - | chr7.1:60741292-60741311 | None:intergenic | 45.0% | |
| ACCTGGGGCTTATTGCATTT+CGG | + | chr7.1:60740353-60740372 | MS.gene29980:intron | 45.0% | |
| ACCTTTGGATCAAGATCGGA+TGG | + | chr7.1:60741288-60741307 | MS.gene29980:intron | 45.0% | |
| ACTGTACTCAATCTGACAGG+TGG | + | chr7.1:60742742-60742761 | MS.gene29980:intron | 45.0% | |
| AGATTAGTAATCGGCGAAGC+CGG | + | chr7.1:60739631-60739650 | MS.gene29980:intron | 45.0% | |
| AGGACCATAGACAGCAAAAC+AGG | - | chr7.1:60739104-60739123 | None:intergenic | 45.0% | |
| ATAACCGAGGGTGGTTGAAT+CGG | - | chr7.1:60739048-60739067 | None:intergenic | 45.0% | |
| ATTCAACCACCCTCGGTTAT+TGG | + | chr7.1:60739048-60739067 | MS.gene29980:CDS | 45.0% | |
| CAACATTACGTTGGTCAGAG+TGG | + | chr7.1:60739497-60739516 | MS.gene29980:intron | 45.0% | |
| CAAGGAGGAGAAAAATGAGG+GGG | - | chr7.1:60742422-60742441 | None:intergenic | 45.0% | |
| CACTCTGACCAACGTAATGT+TGG | - | chr7.1:60739499-60739518 | None:intergenic | 45.0% | |
| CAGCAAGACAGTACTTTGTG+TGG | + | chr7.1:60739188-60739207 | MS.gene29980:CDS | 45.0% | |
| GAAGAAAGACATCCCATACC+AGG | - | chr7.1:60742596-60742615 | None:intergenic | 45.0% | |
| GCAAGAATAGATGCAGAGCA+AGG | + | chr7.1:60740205-60740224 | MS.gene29980:CDS | 45.0% | |
| GCATCTGTGCTATCAGTGTA+TGG | + | chr7.1:60740133-60740152 | MS.gene29980:CDS | 45.0% | |
| GCCAAAATCCATGTCAGTCA+TGG | + | chr7.1:60739308-60739327 | MS.gene29980:CDS | 45.0% | |
| GGCACCACAATAAGTATGAC+AGG | - | chr7.1:60739415-60739434 | None:intergenic | 45.0% | |
| GGCTACAACTTGAGGCTAAA+TGG | + | chr7.1:60741194-60741213 | MS.gene29980:intron | 45.0% | |
| GGGTATTCGCTGAAACATGT+AGG | - | chr7.1:60742575-60742594 | None:intergenic | 45.0% | |
| GGGTCCTGTCATACTTATTG+TGG | + | chr7.1:60739408-60739427 | MS.gene29980:intron | 45.0% | |
| GGTCAGAGTGGAACTAAACT+TGG | + | chr7.1:60739509-60739528 | MS.gene29980:intron | 45.0% | |
| GGTGACCTTTGGATCAAGAT+CGG | + | chr7.1:60741284-60741303 | MS.gene29980:intron | 45.0% | |
| GTATGTCTCTTGATTCTCCC+TGG | + | chr7.1:60739938-60739957 | MS.gene29980:intron | 45.0% | |
| GTCAAAGCGTGAGAAACTGT+TGG | + | chr7.1:60741968-60741987 | MS.gene29980:intron | 45.0% | |
| GTTTAACCAATAACCGAGGG+TGG | - | chr7.1:60739057-60739076 | None:intergenic | 45.0% | |
| TAGTACCAGAGTCTCGTTGT+TGG | + | chr7.1:60741912-60741931 | MS.gene29980:intron | 45.0% | |
| TATACTGGCCACCTTTAGTG+AGG | - | chr7.1:60739599-60739618 | None:intergenic | 45.0% | |
| TCACTGTCATCTACACAAGG+AGG | - | chr7.1:60742437-60742456 | None:intergenic | 45.0% | |
| TCTCAGTCGGAGAACTATAC+TGG | - | chr7.1:60739614-60739633 | None:intergenic | 45.0% | |
| TGAATGCGGGGAATTTGTGA+TGG | - | chr7.1:60741249-60741268 | None:intergenic | 45.0% | |
| TTCAGCGAATACCCTGGTAT+GGG | + | chr7.1:60742581-60742600 | MS.gene29980:intron | 45.0% | |
| TTCATGCTTGCGTCTCGATT+TGG | + | chr7.1:60742656-60742675 | MS.gene29980:CDS | 45.0% | |
| TTTCAGCGAATACCCTGGTA+TGG | + | chr7.1:60742580-60742599 | MS.gene29980:intron | 45.0% | |
| ! | CCCTCGGTTATTGGTTAAAC+TGG | + | chr7.1:60739057-60739076 | MS.gene29980:CDS | 45.0% |
| ! | CGCCGATTACTAATCTCAGT+CGG | - | chr7.1:60739627-60739646 | None:intergenic | 45.0% |
| ! | GCCATGACTGACATGGATTT+TGG | - | chr7.1:60739312-60739331 | None:intergenic | 45.0% |
| ! | GGATCAAAGAGCATAGATGG+AGG | + | chr7.1:60740743-60740762 | MS.gene29980:intron | 45.0% |
| ! | GGTGCATGAAGACTGTGTTT+TGG | + | chr7.1:60740785-60740804 | MS.gene29980:intron | 45.0% |
| ! | TATGGAAGCGTGAAAGGTCA+AGG | + | chr7.1:60739138-60739157 | MS.gene29980:CDS | 45.0% |
| ! | TATTGGTGGCATATCGTCTC+AGG | + | chr7.1:60742246-60742265 | MS.gene29980:intron | 45.0% |
| ! | TGGTCATTGGAGTGCTTAGA+AGG | + | chr7.1:60742125-60742144 | MS.gene29980:intron | 45.0% |
| ! | TGGTGTAAGAGAGGCACATT+TGG | - | chr7.1:60740232-60740251 | None:intergenic | 45.0% |
| ! | TTGGAGTGCTTAGAAGGCTT+AGG | + | chr7.1:60742131-60742150 | MS.gene29980:intron | 45.0% |
| !! | ATTGTGCTGGCTGAGTAAGT+AGG | + | chr7.1:60742072-60742091 | MS.gene29980:intron | 45.0% |
| !! | CACACAAAGTACTGTCTTGC+TGG | - | chr7.1:60739190-60739209 | None:intergenic | 45.0% |
| ACTGAGACAGAGGGTCATGT+TGG | - | chr7.1:60742289-60742308 | None:intergenic | 50.0% | |
| AGCATGGAAGCCATGCCTTA+AGG | + | chr7.1:60739217-60739236 | MS.gene29980:CDS | 50.0% | |
| CATCCCTGTATGCACCATTG+TGG | + | chr7.1:60742787-60742806 | MS.gene29980:CDS | 50.0% | |
| CATTCACGCAGTCAGTGCAT+CGG | + | chr7.1:60741263-60741282 | MS.gene29980:intron | 50.0% | |
| CCTGGGGCTTATTGCATTTC+GGG | + | chr7.1:60740354-60740373 | MS.gene29980:intron | 50.0% | |
| CTGAGACAGAGGGTCATGTT+GGG | - | chr7.1:60742288-60742307 | None:intergenic | 50.0% | |
| CTTTGTGTGGCGATGAAGCA+TGG | + | chr7.1:60739201-60739220 | MS.gene29980:CDS | 50.0% | |
| GAGTGCTTAGAAGGCTTAGG+CGG | + | chr7.1:60742134-60742153 | MS.gene29980:intron | 50.0% | |
| GCTGGCTGAGTAAGTAGGTA+AGG | + | chr7.1:60742077-60742096 | MS.gene29980:intron | 50.0% | |
| GGGTGAATGTCCTTAAGGCA+TGG | - | chr7.1:60739230-60739249 | None:intergenic | 50.0% | |
| TCGGGTTCAGTCCTTGTAGA+TGG | + | chr7.1:60739549-60739568 | MS.gene29980:intron | 50.0% | |
| TCTGTATGTCTGTGGCATCC+TGG | - | chr7.1:60740252-60740271 | None:intergenic | 50.0% | |
| TGCAGGAGCAGTCATGCTTA+CGG | + | chr7.1:60740984-60741003 | MS.gene29980:CDS | 50.0% | |
| TTCTAGGTGGACCTTCACTC+TGG | + | chr7.1:60739898-60739917 | MS.gene29980:intron | 50.0% | |
| ! | ACAACCGATTCAACCACCCT+CGG | + | chr7.1:60739041-60739060 | MS.gene29980:CDS | 50.0% |
| !! | ATGCACTGACTGCGTGAATG+CGG | - | chr7.1:60741263-60741282 | None:intergenic | 50.0% |
| !! | GATTGGTTCGATCCAAGGCA+AGG | - | chr7.1:60739967-60739986 | None:intergenic | 50.0% |
| AAGGGAGGCCTCACTAAAGG+TGG | + | chr7.1:60739588-60739607 | MS.gene29980:intron | 55.0% | |
| ATGGCAGGGTTGCCACATGA+AGG | - | chr7.1:60742002-60742021 | None:intergenic | 55.0% | |
| CCCGAAATGCAATAAGCCCC+AGG | - | chr7.1:60740357-60740376 | None:intergenic | 55.0% | |
| GATCCAAGGCAAGGCTTCCA+GGG | - | chr7.1:60739958-60739977 | None:intergenic | 55.0% | |
| GGAAGCCAACAACGAGACTC+TGG | - | chr7.1:60741920-60741939 | None:intergenic | 55.0% | |
| GTGGCATCCTGGTGTAAGAG+AGG | - | chr7.1:60740241-60740260 | None:intergenic | 55.0% | |
| TTAGTAATCGGCGAAGCCGG+TGG | + | chr7.1:60739634-60739653 | MS.gene29980:intron | 55.0% | |
| ! | GTCAGTGCATCGGTGACCTT+TGG | + | chr7.1:60741273-60741292 | MS.gene29980:intron | 55.0% |
| !! | TGCACTGACTGCGTGAATGC+GGG | - | chr7.1:60741262-60741281 | None:intergenic | 55.0% |
| CGATCCAAGGCAAGGCTTCC+AGG | - | chr7.1:60739959-60739978 | None:intergenic | 60.0% | |
| CGATGAGCCTAGAGCGTGGA+CGG | - | chr7.1:60741947-60741966 | None:intergenic | 60.0% | |
| GGCAAGGGAGGCCTCACTAA+AGG | + | chr7.1:60739585-60739604 | MS.gene29980:intron | 60.0% | |
| TCTCCCTGGAAGCCTTGCCT+TGG | + | chr7.1:60739952-60739971 | MS.gene29980:intron | 60.0% | |
| ! | CGTCCACGCTCTAGGCTCAT+CGG | + | chr7.1:60741945-60741964 | MS.gene29980:intron | 60.0% |
| ! | GTCCACGCTCTAGGCTCATC+GGG | + | chr7.1:60741946-60741965 | MS.gene29980:intron | 60.0% |
| !! | GCACTGACTGCGTGAATGCG+GGG | - | chr7.1:60741261-60741280 | None:intergenic | 60.0% |
| AGCCTAGAGCGTGGACGGTG+AGG | - | chr7.1:60741942-60741961 | None:intergenic | 65.0% | |
| GACCCGATGAGCCTAGAGCG+TGG | - | chr7.1:60741951-60741970 | None:intergenic | 65.0% | |
| GCCTAGAGCGTGGACGGTGA+GGG | - | chr7.1:60741941-60741960 | None:intergenic | 65.0% | |
| TCCCTCACCGTCCACGCTCT+AGG | + | chr7.1:60741937-60741956 | MS.gene29980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 60739022 | 60742808 | 60739022 | ID=MS.gene29980 |
| chr7.1 | mRNA | 60739022 | 60742808 | 60739022 | ID=MS.gene29980.t1;Parent=MS.gene29980 |
| chr7.1 | exon | 60739022 | 60739354 | 60739022 | ID=MS.gene29980.t1.exon1;Parent=MS.gene29980.t1 |
| chr7.1 | CDS | 60739022 | 60739354 | 60739022 | ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1 |
| chr7.1 | exon | 60739904 | 60739937 | 60739904 | ID=MS.gene29980.t1.exon2;Parent=MS.gene29980.t1 |
| chr7.1 | CDS | 60739904 | 60739937 | 60739904 | ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1 |
| chr7.1 | exon | 60740130 | 60740321 | 60740130 | ID=MS.gene29980.t1.exon3;Parent=MS.gene29980.t1 |
| chr7.1 | CDS | 60740130 | 60740321 | 60740130 | ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1 |
| chr7.1 | exon | 60740979 | 60741068 | 60740979 | ID=MS.gene29980.t1.exon4;Parent=MS.gene29980.t1 |
| chr7.1 | CDS | 60740979 | 60741068 | 60740979 | ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1 |
| chr7.1 | exon | 60742447 | 60742512 | 60742447 | ID=MS.gene29980.t1.exon5;Parent=MS.gene29980.t1 |
| chr7.1 | CDS | 60742447 | 60742512 | 60742447 | ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1 |
| chr7.1 | exon | 60742586 | 60742677 | 60742586 | ID=MS.gene29980.t1.exon6;Parent=MS.gene29980.t1 |
| chr7.1 | CDS | 60742586 | 60742677 | 60742586 | ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1 |
| chr7.1 | exon | 60742761 | 60742808 | 60742761 | ID=MS.gene29980.t1.exon7;Parent=MS.gene29980.t1 |
| chr7.1 | CDS | 60742761 | 60742808 | 60742761 | ID=cds.MS.gene29980.t1;Parent=MS.gene29980.t1 |
| Gene Sequence |
| Protein sequence |
