AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056446


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056446.t1 MTR_8g069800 91.777 377 31 0 1 377 1 377 0.0 721
MS.gene056446.t1 MTR_5g033880 55.469 384 156 9 1 377 1 376 3.86e-140 404
MS.gene056446.t1 MTR_5g043750 55.000 380 157 8 2 376 3 373 2.32e-137 396
MS.gene056446.t1 MTR_7g059040 26.075 372 239 13 18 363 10 371 4.52e-23 99.8
MS.gene056446.t1 MTR_0197s0070 26.075 372 239 13 18 363 10 371 4.52e-23 99.8
MS.gene056446.t1 MTR_5g033860 48.913 92 42 3 276 367 1 87 2.26e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056446.t1 AT1G23390 44.772 373 194 8 12 373 17 388 2.12e-98 298

Find 111 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAGAGAAATTAGGATTA+GGG 0.301854 8.2:-33216069 MS.gene056446:CDS
ATGGTGGTGTGCGAGGTTTC+AGG 0.311554 8.2:-33215905 MS.gene056446:CDS
CGCGGTCACGTTGGGAGCTC+GGG 0.321349 8.2:+33216666 None:intergenic
GTGAAAGAGAAATTAGGATT+AGG 0.325139 8.2:-33216070 MS.gene056446:CDS
CCATTGCTTTGACAAGTAAC+TGG 0.351206 8.2:+33216762 None:intergenic
CGTATTTAACAATTCACTTT+CGG 0.366500 8.2:+33215988 None:intergenic
GTACGTGCCACTCATTTACT+TGG 0.377036 8.2:-33216791 MS.gene056446:CDS
TGGGAAGTGAAAGAGAAATT+AGG 0.377570 8.2:-33216076 MS.gene056446:CDS
TCGCACACCACCATCTCTTC+TGG 0.377942 8.2:+33215914 None:intergenic
AACCGTGAGCCACGGCTTCA+CGG 0.402496 8.2:+33216702 None:intergenic
TCGCGGTCACGTTGGGAGCT+CGG 0.403526 8.2:+33216665 None:intergenic
ACCGTGAGCCACGGCTTCAC+GGG 0.408380 8.2:+33216703 None:intergenic
GGGAACATTGAAGAATTGTT+TGG 0.410765 8.2:-33216149 MS.gene056446:CDS
TGGAGTCTCGTGATTGGATT+CGG 0.439780 8.2:-33216360 MS.gene056446:CDS
ACGTGCCATCACCACATGTT+TGG 0.442222 8.2:-33216483 MS.gene056446:CDS
TCACGGGGTTGACGTGGCGG+AGG 0.448435 8.2:+33216719 None:intergenic
CATCCATGGAGACATCTTAG+AGG 0.451291 8.2:-33216824 MS.gene056446:CDS
GTGTGCGAGGTTTCAGGAAA+AGG 0.452966 8.2:-33215899 MS.gene056446:CDS
GAAGAATTGTTTGGTGGTTG+TGG 0.454658 8.2:-33216140 MS.gene056446:CDS
TTGGTGGTTGTGGGAATAGT+AGG 0.455182 8.2:-33216130 MS.gene056446:CDS
GTGCGCCGGTGATGTGTGTT+TGG 0.455463 8.2:-33215807 MS.gene056446:CDS
GGAAAGTGCATCGTTGTTGC+TGG 0.457653 8.2:-33216433 MS.gene056446:CDS
GCATAGGTCGCGGTCACGTT+GGG 0.460713 8.2:+33216658 None:intergenic
CTCTAAGATGTCTCCATGGA+TGG 0.466127 8.2:+33216825 None:intergenic
ACGACATGGAGTCTCGTGAT+TGG 0.470621 8.2:-33216366 MS.gene056446:CDS
AGGTGTGATGCCGAGCAAAA+TGG 0.470668 8.2:-33216029 MS.gene056446:CDS
CTTTCCCACACGTGCAACAA+TGG 0.472753 8.2:+33216450 None:intergenic
GTGAATTTGAATCCACGTTA+AGG 0.472941 8.2:+33216621 None:intergenic
TCGTAGATCTCCACTGCTAA+AGG 0.479554 8.2:+33216385 None:intergenic
AAGTGCATCGTTGTTGCTGG+TGG 0.482167 8.2:-33216430 MS.gene056446:CDS
GATATAGAAGCTCCCATCCA+TGG 0.495252 8.2:-33216838 MS.gene056446:CDS
TGCTTTGACAAGTAACTGGC+TGG 0.498257 8.2:+33216766 None:intergenic
AAGAATTGTTTGGTGGTTGT+GGG 0.498348 8.2:-33216139 MS.gene056446:CDS
GGTGAATGACGAGACAAGAA+TGG 0.499319 8.2:-33215843 MS.gene056446:CDS
TTTCCCACACGTGCAACAAT+GGG 0.501962 8.2:+33216451 None:intergenic
CCCCGTGAAGCCGTGGCTCA+CGG 0.509234 8.2:-33216704 MS.gene056446:CDS
ATGGCACGTGGTTCCACGTA+AGG 0.509729 8.2:+33216497 None:intergenic
GTGGTATCCTTCATCATCTC+CGG 0.512400 8.2:+33216325 None:intergenic
ACGTGAAAGGAGTGAAAGTG+TGG 0.521051 8.2:-33216096 MS.gene056446:CDS
AGAGAGTGTGTAGAGGAGCG+TGG 0.527205 8.2:+33216555 None:intergenic
TGAATCCACGTTAAGGAGCG+TGG 0.528536 8.2:+33216628 None:intergenic
GATGAGGTGTGATTGATTTG+TGG 0.531034 8.2:+33216595 None:intergenic
ACGATTAAATTGATTTCGAT+AGG 0.531870 8.2:-33215968 MS.gene056446:CDS
TCGATCCGCTCCACCTTACG+TGG 0.532824 8.2:-33216510 MS.gene056446:CDS
CGCCGGTGATGTGTGTTTGG+AGG 0.535390 8.2:-33215804 MS.gene056446:CDS
GTTGTATGTTTATAATACGT+CGG 0.546515 8.2:-33215939 MS.gene056446:CDS
GGATCCCATTGTTGCACGTG+TGG 0.553947 8.2:-33216455 MS.gene056446:CDS
AGTGTATTGCACTACGAGAC+GGG 0.554199 8.2:-33216169 MS.gene056446:CDS
AGCATAGGTCGCGGTCACGT+TGG 0.558729 8.2:+33216657 None:intergenic
GGTGTGAGTGGTGGAGCGTG+AGG 0.559549 8.2:-33215874 MS.gene056446:CDS
CAGGAAAAGGAGGGTGTGAG+TGG 0.561224 8.2:-33215886 MS.gene056446:CDS
AGTGCATCGTTGTTGCTGGT+GGG 0.564209 8.2:-33216429 MS.gene056446:CDS
CACGGGGTTGACGTGGCGGA+GGG 0.565979 8.2:+33216720 None:intergenic
CGTAAGGTGGAGCGGATCGA+AGG 0.566193 8.2:+33216513 None:intergenic
AACATTGAAGAATTGTTTGG+TGG 0.570668 8.2:-33216146 MS.gene056446:CDS
ACGACCCACGCTCCTTAACG+TGG 0.571367 8.2:-33216633 MS.gene056446:CDS
TGAGTGTGAACCGTGAGCCA+CGG 0.571726 8.2:+33216694 None:intergenic
CTCTTCTCCTCGTAAATCGT+AGG 0.572048 8.2:+33216192 None:intergenic
GATTCGGTGTGAATCGATGC+CGG 0.575346 8.2:-33216344 MS.gene056446:CDS
GTGAATGACGAGACAAGAAT+GGG 0.577203 8.2:-33215842 MS.gene056446:CDS
ACGTCAACCCCGTGAAGCCG+TGG 0.579311 8.2:-33216711 MS.gene056446:CDS
AAAATGGTGAAGAAACTAAG+AGG 0.581413 8.2:-33216013 MS.gene056446:CDS
GGAGCGTGGGTCGTAAGCAT+AGG 0.586710 8.2:+33216642 None:intergenic
ATCGATGCCGGAGATGATGA+AGG 0.587548 8.2:-33216332 MS.gene056446:CDS
ATCCTCCAAACACACATCAC+CGG 0.588115 8.2:+33215802 None:intergenic
GAAAAGGAGGGTGTGAGTGG+TGG 0.590602 8.2:-33215883 MS.gene056446:CDS
TACGTCGGAACCAGAAGAGA+TGG 0.591520 8.2:-33215924 MS.gene056446:CDS
TGCGAGGTTTCAGGAAAAGG+AGG 0.591578 8.2:-33215896 MS.gene056446:CDS
AGAGAGCCATGTCGATGTTG+TGG 0.593045 8.2:+33216306 None:intergenic
TCTAAGATGTCTCCATGGAT+GGG 0.593221 8.2:+33216826 None:intergenic
CCAGTTACTTGTCAAAGCAA+TGG 0.593838 8.2:-33216762 MS.gene056446:CDS
GAATCCACGTTAAGGAGCGT+GGG 0.595026 8.2:+33216629 None:intergenic
GAGTGTATTGCACTACGAGA+CGG 0.596625 8.2:-33216170 MS.gene056446:CDS
TCTTCTCCTCGTAAATCGTA+GGG 0.597176 8.2:+33216193 None:intergenic
AAGGAGAAGGAGAATTCAGT+GGG 0.597757 8.2:+33216532 None:intergenic
GTGCATCGTTGTTGCTGGTG+GGG 0.598092 8.2:-33216428 MS.gene056446:CDS
CCGTGAGCCACGGCTTCACG+GGG 0.598736 8.2:+33216704 None:intergenic
GCGGTCACGTTGGGAGCTCG+GGG 0.599340 8.2:+33216667 None:intergenic
ACACGCCAAACATGTGGTGA+TGG 0.603128 8.2:+33216478 None:intergenic
TGAGGACGATCCTTTAGCAG+TGG 0.605663 8.2:-33216395 MS.gene056446:CDS
GTGGAGCGGATCGAAGGAGA+AGG 0.608202 8.2:+33216519 None:intergenic
GAAGGAGAAGGAGAATTCAG+TGG 0.609419 8.2:+33216531 None:intergenic
GCACGTGGTTCCACGTAAGG+TGG 0.610908 8.2:+33216500 None:intergenic
ACGGCTTCACGGGGTTGACG+TGG 0.612757 8.2:+33216713 None:intergenic
GAGTGGCACGTACGAAAGTG+TGG 0.614326 8.2:+33216801 None:intergenic
AGAAGAGATGGTGGTGTGCG+AGG 0.615269 8.2:-33215912 MS.gene056446:CDS
GCTTCACGGGGTTGACGTGG+CGG 0.622553 8.2:+33216716 None:intergenic
GGTGATGCGGAAAACGTGAA+AGG 0.623985 8.2:-33216109 MS.gene056446:CDS
TGGCCTCTAAGATGTCTCCA+TGG 0.630332 8.2:+33216821 None:intergenic
CGTGAAAGGAGTGAAAGTGT+GGG 0.631117 8.2:-33216095 MS.gene056446:CDS
TTGATTGTAAAATGATGATG+TGG 0.634166 8.2:-33216222 MS.gene056446:CDS
TGGTTCCACGTAAGGTGGAG+CGG 0.634647 8.2:+33216505 None:intergenic
GTGTGATGATCTTAGAGATG+AGG 0.635535 8.2:+33216579 None:intergenic
ATCACCACATGTTTGGCGTG+TGG 0.636793 8.2:-33216476 MS.gene056446:CDS
GGATCCACACGCCAAACATG+TGG 0.637468 8.2:+33216472 None:intergenic
GGAAGAATTGTATTGTGCGC+CGG 0.638068 8.2:-33215821 MS.gene056446:CDS
TTTGGAGGATTTGAAGAGCG+CGG 0.638626 8.2:-33215789 MS.gene056446:CDS
GGAGGGAGCTCAATACTGCA+TGG 0.654930 8.2:+33216737 None:intergenic
CAGTGGGAGAGAGTGTGTAG+AGG 0.660934 8.2:+33216548 None:intergenic
GATCCCATTGTTGCACGTGT+GGG 0.664770 8.2:-33216454 MS.gene056446:CDS
AAACATGTGGTGATGGCACG+TGG 0.672782 8.2:+33216485 None:intergenic
TGTAAAATGATGATGTGGCA+AGG 0.673716 8.2:-33216217 MS.gene056446:CDS
GCGAGGTTTCAGGAAAAGGA+GGG 0.678335 8.2:-33215895 MS.gene056446:CDS
TGGGTCGTAAGCATAGGTCG+CGG 0.682744 8.2:+33216648 None:intergenic
GCTGGCGCCAAGTAAATGAG+TGG 0.684252 8.2:+33216784 None:intergenic
CAAGGTCCCTACGATTTACG+AGG 0.685710 8.2:-33216199 MS.gene056446:CDS
TGTGGGAATAGTAGGTGATG+CGG 0.687770 8.2:-33216122 MS.gene056446:CDS
GTCGGAACCAGAAGAGATGG+TGG 0.688127 8.2:-33215921 MS.gene056446:CDS
AGCAGTGGAGATCTACGACA+TGG 0.697150 8.2:-33216380 MS.gene056446:CDS
AGGATACCACAACATCGACA+TGG 0.697233 8.2:-33216312 MS.gene056446:CDS
GTGGAGCGTGAGGAATGCAG+TGG 0.757775 8.2:-33215864 MS.gene056446:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATTAGGATTAGGGTTAAAAA+TGG - chr8.2:33216557-33216576 MS.gene056446:CDS 25.0%
! CGTATTTAACAATTCACTTT+CGG + chr8.2:33216631-33216650 None:intergenic 25.0%
! GTTGTATGTTTATAATACGT+CGG - chr8.2:33216677-33216696 MS.gene056446:CDS 25.0%
! TGAAAGAGAAATTAGGATTA+GGG - chr8.2:33216547-33216566 MS.gene056446:CDS 25.0%
!! ACGATTAAATTGATTTCGAT+AGG - chr8.2:33216648-33216667 MS.gene056446:CDS 25.0%
!! TTGATTGTAAAATGATGATG+TGG - chr8.2:33216394-33216413 MS.gene056446:CDS 25.0%
AAAATGGTGAAGAAACTAAG+AGG - chr8.2:33216603-33216622 MS.gene056446:CDS 30.0%
AACATTGAAGAATTGTTTGG+TGG - chr8.2:33216470-33216489 MS.gene056446:CDS 30.0%
GGGTTAAAAATGGAGAAATT+AGG - chr8.2:33216567-33216586 MS.gene056446:CDS 30.0%
GTGAAAGAGAAATTAGGATT+AGG - chr8.2:33216546-33216565 MS.gene056446:CDS 30.0%
GGGAACATTGAAGAATTGTT+TGG - chr8.2:33216467-33216486 MS.gene056446:CDS 35.0%
GTGAATTTGAATCCACGTTA+AGG + chr8.2:33215998-33216017 None:intergenic 35.0%
TGGGAAGTGAAAGAGAAATT+AGG - chr8.2:33216540-33216559 MS.gene056446:CDS 35.0%
! AAGAATTGTTTGGTGGTTGT+GGG - chr8.2:33216477-33216496 MS.gene056446:CDS 35.0%
! AGTTTCTTCACCATTTTGCT+CGG + chr8.2:33216600-33216619 None:intergenic 35.0%
! TGTAAAATGATGATGTGGCA+AGG - chr8.2:33216399-33216418 MS.gene056446:CDS 35.0%
AAGGAGAAGGAGAATTCAGT+GGG + chr8.2:33216087-33216106 None:intergenic 40.0%
CCAGTTACTTGTCAAAGCAA+TGG - chr8.2:33215854-33215873 MS.gene056446:CDS 40.0%
CCATTGCTTTGACAAGTAAC+TGG + chr8.2:33215857-33215876 None:intergenic 40.0%
GTGAATGACGAGACAAGAAT+GGG - chr8.2:33216774-33216793 MS.gene056446:CDS 40.0%
GTGTGATGATCTTAGAGATG+AGG + chr8.2:33216040-33216059 None:intergenic 40.0%
TACGTGACTGAGAAAAACTC+AGG - chr8.2:33216357-33216376 MS.gene056446:CDS 40.0%
TCTTCTCCTCGTAAATCGTA+GGG + chr8.2:33216426-33216445 None:intergenic 40.0%
! GAAGAATTGTTTGGTGGTTG+TGG - chr8.2:33216476-33216495 MS.gene056446:CDS 40.0%
! TCTAAGATGTCTCCATGGAT+GGG + chr8.2:33215793-33215812 None:intergenic 40.0%
!! GATGAGGTGTGATTGATTTG+TGG + chr8.2:33216024-33216043 None:intergenic 40.0%
ACGTGAAAGGAGTGAAAGTG+TGG - chr8.2:33216520-33216539 MS.gene056446:CDS 45.0%
AGGATACCACAACATCGACA+TGG - chr8.2:33216304-33216323 MS.gene056446:CDS 45.0%
AGTGTATTGCACTACGAGAC+GGG - chr8.2:33216447-33216466 MS.gene056446:CDS 45.0%
ATCCTCCAAACACACATCAC+CGG + chr8.2:33216817-33216836 None:intergenic 45.0%
CATCCATGGAGACATCTTAG+AGG - chr8.2:33215792-33215811 MS.gene056446:CDS 45.0%
CTCTTCTCCTCGTAAATCGT+AGG + chr8.2:33216427-33216446 None:intergenic 45.0%
GAAGGAGAAGGAGAATTCAG+TGG + chr8.2:33216088-33216107 None:intergenic 45.0%
GAGTGTATTGCACTACGAGA+CGG - chr8.2:33216446-33216465 MS.gene056446:CDS 45.0%
GATATAGAAGCTCCCATCCA+TGG - chr8.2:33215778-33215797 MS.gene056446:CDS 45.0%
GGAAGAATTGTATTGTGCGC+CGG - chr8.2:33216795-33216814 MS.gene056446:CDS 45.0%
GGTGAATGACGAGACAAGAA+TGG - chr8.2:33216773-33216792 MS.gene056446:CDS 45.0%
GTGGTATCCTTCATCATCTC+CGG + chr8.2:33216294-33216313 None:intergenic 45.0%
TCGTAGATCTCCACTGCTAA+AGG + chr8.2:33216234-33216253 None:intergenic 45.0%
TGCTTTGACAAGTAACTGGC+TGG + chr8.2:33215853-33215872 None:intergenic 45.0%
TGGAGTCTCGTGATTGGATT+CGG - chr8.2:33216256-33216275 MS.gene056446:CDS 45.0%
TGTGGGAATAGTAGGTGATG+CGG - chr8.2:33216494-33216513 MS.gene056446:CDS 45.0%
TTTCCCACACGTGCAACAAT+GGG + chr8.2:33216168-33216187 None:intergenic 45.0%
TTTGGAGGATTTGAAGAGCG+CGG - chr8.2:33216827-33216846 MS.gene056446:CDS 45.0%
! CGTGAAAGGAGTGAAAGTGT+GGG - chr8.2:33216521-33216540 MS.gene056446:CDS 45.0%
! GTACGTGCCACTCATTTACT+TGG - chr8.2:33215825-33215844 MS.gene056446:CDS 45.0%
! TGGTGGGGTATGTGATTTTG+AGG - chr8.2:33216203-33216222 MS.gene056446:CDS 45.0%
! TTGGTGGTTGTGGGAATAGT+AGG - chr8.2:33216486-33216505 MS.gene056446:CDS 45.0%
!! CTCTAAGATGTCTCCATGGA+TGG + chr8.2:33215794-33215813 None:intergenic 45.0%
AAGTGCATCGTTGTTGCTGG+TGG - chr8.2:33216186-33216205 MS.gene056446:CDS 50.0%
ACACGCCAAACATGTGGTGA+TGG + chr8.2:33216141-33216160 None:intergenic 50.0%
ACGACATGGAGTCTCGTGAT+TGG - chr8.2:33216250-33216269 MS.gene056446:CDS 50.0%
ACGTGCCATCACCACATGTT+TGG - chr8.2:33216133-33216152 MS.gene056446:CDS 50.0%
AGAGAGCCATGTCGATGTTG+TGG + chr8.2:33216313-33216332 None:intergenic 50.0%
AGCAGTGGAGATCTACGACA+TGG - chr8.2:33216236-33216255 MS.gene056446:CDS 50.0%
AGGTGTGATGCCGAGCAAAA+TGG - chr8.2:33216587-33216606 MS.gene056446:CDS 50.0%
AGTGCATCGTTGTTGCTGGT+GGG - chr8.2:33216187-33216206 MS.gene056446:CDS 50.0%
ATCACCACATGTTTGGCGTG+TGG - chr8.2:33216140-33216159 MS.gene056446:CDS 50.0%
ATCGATGCCGGAGATGATGA+AGG - chr8.2:33216284-33216303 MS.gene056446:CDS 50.0%
CAAGGTCCCTACGATTTACG+AGG - chr8.2:33216417-33216436 MS.gene056446:CDS 50.0%
CTTTCCCACACGTGCAACAA+TGG + chr8.2:33216169-33216188 None:intergenic 50.0%
GATCCCATTGTTGCACGTGT+GGG - chr8.2:33216162-33216181 MS.gene056446:CDS 50.0%
GCGAGGTTTCAGGAAAAGGA+GGG - chr8.2:33216721-33216740 MS.gene056446:CDS 50.0%
GGTGATGCGGAAAACGTGAA+AGG - chr8.2:33216507-33216526 MS.gene056446:CDS 50.0%
GTGTGCGAGGTTTCAGGAAA+AGG - chr8.2:33216717-33216736 MS.gene056446:CDS 50.0%
TACGTCGGAACCAGAAGAGA+TGG - chr8.2:33216692-33216711 MS.gene056446:CDS 50.0%
TGAATCCACGTTAAGGAGCG+TGG + chr8.2:33215991-33216010 None:intergenic 50.0%
TGAGGACGATCCTTTAGCAG+TGG - chr8.2:33216221-33216240 MS.gene056446:CDS 50.0%
TGCGAGGTTTCAGGAAAAGG+AGG - chr8.2:33216720-33216739 MS.gene056446:CDS 50.0%
! GAATCCACGTTAAGGAGCGT+GGG + chr8.2:33215990-33216009 None:intergenic 50.0%
! GGAAAGTGCATCGTTGTTGC+TGG - chr8.2:33216183-33216202 MS.gene056446:CDS 50.0%
!! AAACATGTGGTGATGGCACG+TGG + chr8.2:33216134-33216153 None:intergenic 50.0%
!! GATTCGGTGTGAATCGATGC+CGG - chr8.2:33216272-33216291 MS.gene056446:CDS 50.0%
!! TGGCCTCTAAGATGTCTCCA+TGG + chr8.2:33215798-33215817 None:intergenic 50.0%
ATGGCACGTGGTTCCACGTA+AGG + chr8.2:33216122-33216141 None:intergenic 55.0%
GAGTGGCACGTACGAAAGTG+TGG + chr8.2:33215818-33215837 None:intergenic 55.0%
GCTGGCGCCAAGTAAATGAG+TGG + chr8.2:33215835-33215854 None:intergenic 55.0%
GGAGGGAGCTCAATACTGCA+TGG + chr8.2:33215882-33215901 None:intergenic 55.0%
GGATCCACACGCCAAACATG+TGG + chr8.2:33216147-33216166 None:intergenic 55.0%
GGATCCCATTGTTGCACGTG+TGG - chr8.2:33216161-33216180 MS.gene056446:CDS 55.0%
GTCGGAACCAGAAGAGATGG+TGG - chr8.2:33216695-33216714 MS.gene056446:CDS 55.0%
GTGCATCGTTGTTGCTGGTG+GGG - chr8.2:33216188-33216207 MS.gene056446:CDS 55.0%
TCGCACACCACCATCTCTTC+TGG + chr8.2:33216705-33216724 None:intergenic 55.0%
TGAGTGTGAACCGTGAGCCA+CGG + chr8.2:33215925-33215944 None:intergenic 55.0%
TGGGTCGTAAGCATAGGTCG+CGG + chr8.2:33215971-33215990 None:intergenic 55.0%
TGGTTCCACGTAAGGTGGAG+CGG + chr8.2:33216114-33216133 None:intergenic 55.0%
! AGAAGAGATGGTGGTGTGCG+AGG - chr8.2:33216704-33216723 MS.gene056446:CDS 55.0%
! AGAGAGTGTGTAGAGGAGCG+TGG + chr8.2:33216064-33216083 None:intergenic 55.0%
! ATGGTGGTGTGCGAGGTTTC+AGG - chr8.2:33216711-33216730 MS.gene056446:CDS 55.0%
! CAGGAAAAGGAGGGTGTGAG+TGG - chr8.2:33216730-33216749 MS.gene056446:CDS 55.0%
! CAGTGGGAGAGAGTGTGTAG+AGG + chr8.2:33216071-33216090 None:intergenic 55.0%
! GAAAAGGAGGGTGTGAGTGG+TGG - chr8.2:33216733-33216752 MS.gene056446:CDS 55.0%
AACCGTGAGCCACGGCTTCA+CGG + chr8.2:33215917-33215936 None:intergenic 60.0%
ACGACCCACGCTCCTTAACG+TGG - chr8.2:33215983-33216002 MS.gene056446:CDS 60.0%
AGCATAGGTCGCGGTCACGT+TGG + chr8.2:33215962-33215981 None:intergenic 60.0%
CGCCGGTGATGTGTGTTTGG+AGG - chr8.2:33216812-33216831 MS.gene056446:CDS 60.0%
CGTAAGGTGGAGCGGATCGA+AGG + chr8.2:33216106-33216125 None:intergenic 60.0%
GCACGTGGTTCCACGTAAGG+TGG + chr8.2:33216119-33216138 None:intergenic 60.0%
GCATAGGTCGCGGTCACGTT+GGG + chr8.2:33215961-33215980 None:intergenic 60.0%
GGAGCGTGGGTCGTAAGCAT+AGG + chr8.2:33215977-33215996 None:intergenic 60.0%
GTGGAGCGGATCGAAGGAGA+AGG + chr8.2:33216100-33216119 None:intergenic 60.0%
GTGGAGCGTGAGGAATGCAG+TGG - chr8.2:33216752-33216771 MS.gene056446:CDS 60.0%
TCGATCCGCTCCACCTTACG+TGG - chr8.2:33216106-33216125 MS.gene056446:CDS 60.0%
! GTGCGCCGGTGATGTGTGTT+TGG - chr8.2:33216809-33216828 MS.gene056446:CDS 60.0%
ACCGTGAGCCACGGCTTCAC+GGG + chr8.2:33215916-33215935 None:intergenic 65.0%
ACGGCTTCACGGGGTTGACG+TGG + chr8.2:33215906-33215925 None:intergenic 65.0%
ACGTCAACCCCGTGAAGCCG+TGG - chr8.2:33215905-33215924 MS.gene056446:CDS 65.0%
GCTTCACGGGGTTGACGTGG+CGG + chr8.2:33215903-33215922 None:intergenic 65.0%
TCGCGGTCACGTTGGGAGCT+CGG + chr8.2:33215954-33215973 None:intergenic 65.0%
! GGTGTGAGTGGTGGAGCGTG+AGG - chr8.2:33216742-33216761 MS.gene056446:CDS 65.0%
CCCCGTGAAGCCGTGGCTCA+CGG - chr8.2:33215912-33215931 MS.gene056446:CDS 70.0%
CCGTGAGCCACGGCTTCACG+GGG + chr8.2:33215915-33215934 None:intergenic 70.0%
CGCGGTCACGTTGGGAGCTC+GGG + chr8.2:33215953-33215972 None:intergenic 70.0%
GCGGTCACGTTGGGAGCTCG+GGG + chr8.2:33215952-33215971 None:intergenic 70.0%
TCACGGGGTTGACGTGGCGG+AGG + chr8.2:33215900-33215919 None:intergenic 70.0%
! CACGGGGTTGACGTGGCGGA+GGG + chr8.2:33215899-33215918 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 33215751 33216887 33215751 ID=MS.gene056446
chr8.2 mRNA 33215751 33216887 33215751 ID=MS.gene056446.t1;Parent=MS.gene056446
chr8.2 exon 33215751 33216887 33215751 ID=MS.gene056446.t1.exon1;Parent=MS.gene056446.t1
chr8.2 CDS 33215751 33216887 33215751 ID=cds.MS.gene056446.t1;Parent=MS.gene056446.t1
Gene Sequence

>MS.gene056446

ATGGCAACAAAGAAAATTCAAGAAAAAGATATAGAAGCTCCCATCCATGGAGACATCTTAGAGGCCACACTTTCGTACGTGCCACTCATTTACTTGGCGCCAGCCAGTTACTTGTCAAAGCAATGGAACCATGCAGTATTGAGCTCCCTCCGCCACGTCAACCCCGTGAAGCCGTGGCTCACGGTTCACACTCAAAATCCCCGAGCTCCCAACGTGACCGCGACCTATGCTTACGACCCACGCTCCTTAACGTGGATTCAAATTCACGCGCCACAAATCAATCACACCTCATCTCTAAGATCATCACACTCCACGCTCCTCTACACACTCTCTCCCACTGAATTCTCCTTCTCCTTCGATCCGCTCCACCTTACGTGGAACCACGTGCCATCACCACATGTTTGGCGTGTGGATCCCATTGTTGCACGTGTGGGAAAGTGCATCGTTGTTGCTGGTGGGGTATGTGATTTTGAGGACGATCCTTTAGCAGTGGAGATCTACGACATGGAGTCTCGTGATTGGATTCGGTGTGAATCGATGCCGGAGATGATGAAGGATACCACAACATCGACATGGCTCTCTGTTACTGTTGTCGATGAGTTTATGTACGTGACTGAGAAAAACTCAGGCACGATGTACTCATTTGATTGTAAAATGATGATGTGGCAAGGTCCCTACGATTTACGAGGAGAAGAGAGTGTATTGCACTACGAGACGGGAACATTGAAGAATTGTTTGGTGGTTGTGGGAATAGTAGGTGATGCGGAAAACGTGAAAGGAGTGAAAGTGTGGGAAGTGAAAGAGAAATTAGGATTAGGGTTAAAAATGGAGAAATTAGGTGTGATGCCGAGCAAAATGGTGAAGAAACTAAGAGGCACCGAAAGTGAATTGTTAAATACGATTAAATTGATTTCGATAGGAGACTTGTTGTATGTTTATAATACGTCGGAACCAGAAGAGATGGTGGTGTGCGAGGTTTCAGGAAAAGGAGGGTGTGAGTGGTGGAGCGTGAGGAATGCAGTGGTGAATGACGAGACAAGAATGGGAAGAATTGTATTGTGCGCCGGTGATGTGTGTTTGGAGGATTTGAAGAGCGCGGTTTCAAGAGATTGTAAGTTTGAATTGAAACAACAATGA

Protein sequence

>MS.gene056446.t1

MATKKIQEKDIEAPIHGDILEATLSYVPLIYLAPASYLSKQWNHAVLSSLRHVNPVKPWLTVHTQNPRAPNVTATYAYDPRSLTWIQIHAPQINHTSSLRSSHSTLLYTLSPTEFSFSFDPLHLTWNHVPSPHVWRVDPIVARVGKCIVVAGGVCDFEDDPLAVEIYDMESRDWIRCESMPEMMKDTTTSTWLSVTVVDEFMYVTEKNSGTMYSFDCKMMMWQGPYDLRGEESVLHYETGTLKNCLVVVGIVGDAENVKGVKVWEVKEKLGLGLKMEKLGVMPSKMVKKLRGTESELLNTIKLISIGDLLYVYNTSEPEEMVVCEVSGKGGCEWWSVRNAVVNDETRMGRIVLCAGDVCLEDLKSAVSRDCKFELKQQ