Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30515.t1 | XP_013452475.1 | 97 | 400 | 12 | 0 | 1 | 400 | 144 | 543 | 6.40E-220 | 773.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30515.t1 | Q8W469 | 77.1 | 397 | 89 | 2 | 1 | 396 | 144 | 539 | 1.2e-177 | 624.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30515.t1 | A0A072U9N0 | 97.0 | 400 | 12 | 0 | 1 | 400 | 36 | 435 | 4.6e-220 | 773.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene30515 | 0.808739 | 2.67E-50 | -1.69E-46 |
| MS.gene049404 | MS.gene30515 | 0.80839 | 3.17E-50 | -1.69E-46 |
| MS.gene050026 | MS.gene30515 | 0.801034 | 1.09E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene30515 | 0.815972 | 7.03E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene30515 | 0.822752 | 2.00E-53 | -1.69E-46 |
| MS.gene052037 | MS.gene30515 | 0.806483 | 8.05E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene30515 | -0.80889 | 2.48E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene30515 | 0.800215 | 1.60E-48 | -1.69E-46 |
| MS.gene052616 | MS.gene30515 | 0.804584 | 2.01E-49 | -1.69E-46 |
| MS.gene05308 | MS.gene30515 | 0.808054 | 3.74E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene30515 | 0.82371 | 1.20E-53 | -1.69E-46 |
| MS.gene057208 | MS.gene30515 | 0.803459 | 3.45E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene30515 | 0.814204 | 1.74E-51 | -1.69E-46 |
| MS.gene058279 | MS.gene30515 | 0.800193 | 1.62E-48 | -1.69E-46 |
| MS.gene058625 | MS.gene30515 | 0.815548 | 8.74E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene30515 | 0.808636 | 2.81E-50 | -1.69E-46 |
| MS.gene060310 | MS.gene30515 | 0.805583 | 1.24E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30515.t1 | MTR_6g463340 | 97.000 | 400 | 12 | 0 | 1 | 400 | 36 | 435 | 0.0 | 795 |
| MS.gene30515.t1 | MTR_6g463340 | 97.000 | 400 | 12 | 0 | 1 | 400 | 144 | 543 | 0.0 | 794 |
| MS.gene30515.t1 | MTR_8g030680 | 73.990 | 396 | 100 | 2 | 1 | 394 | 142 | 536 | 0.0 | 603 |
| MS.gene30515.t1 | MTR_8g030680 | 73.990 | 396 | 100 | 2 | 1 | 394 | 56 | 450 | 0.0 | 602 |
| MS.gene30515.t1 | MTR_7g077800 | 72.222 | 396 | 107 | 2 | 1 | 394 | 139 | 533 | 0.0 | 598 |
| MS.gene30515.t1 | MTR_7g077800 | 72.222 | 396 | 107 | 2 | 1 | 394 | 1 | 395 | 0.0 | 597 |
| MS.gene30515.t1 | MTR_7g077800 | 72.204 | 313 | 84 | 2 | 1 | 311 | 139 | 450 | 3.06e-164 | 468 |
| MS.gene30515.t1 | MTR_7g405780 | 51.706 | 381 | 182 | 2 | 1 | 380 | 147 | 526 | 1.26e-134 | 396 |
| MS.gene30515.t1 | MTR_1g116953 | 48.346 | 393 | 194 | 3 | 1 | 384 | 130 | 522 | 2.58e-129 | 382 |
| MS.gene30515.t1 | MTR_7g405780 | 51.515 | 363 | 174 | 2 | 1 | 362 | 147 | 508 | 9.81e-129 | 380 |
| MS.gene30515.t1 | MTR_7g077800 | 64.615 | 260 | 86 | 3 | 1 | 255 | 139 | 397 | 5.62e-112 | 333 |
| MS.gene30515.t1 | MTR_7g405780 | 50.482 | 311 | 152 | 2 | 1 | 310 | 147 | 456 | 4.18e-105 | 318 |
| MS.gene30515.t1 | MTR_7g405780 | 50.325 | 308 | 151 | 2 | 1 | 307 | 147 | 453 | 2.65e-103 | 313 |
| MS.gene30515.t1 | MTR_1g100980 | 30.901 | 233 | 119 | 6 | 188 | 383 | 134 | 361 | 5.23e-24 | 102 |
| MS.gene30515.t1 | MTR_3g109932 | 34.715 | 193 | 108 | 6 | 191 | 383 | 149 | 323 | 9.46e-23 | 98.6 |
| MS.gene30515.t1 | MTR_3g109932 | 35.326 | 184 | 101 | 6 | 191 | 374 | 149 | 314 | 3.40e-22 | 96.7 |
| MS.gene30515.t1 | MTR_1g008280 | 34.659 | 176 | 100 | 5 | 206 | 381 | 161 | 321 | 5.74e-20 | 90.9 |
| MS.gene30515.t1 | MTR_1g008280 | 32.973 | 185 | 100 | 6 | 206 | 381 | 161 | 330 | 2.46e-17 | 83.2 |
| MS.gene30515.t1 | MTR_1g008280 | 34.307 | 137 | 76 | 4 | 206 | 342 | 161 | 283 | 5.05e-14 | 72.8 |
| MS.gene30515.t1 | MTR_3g109968 | 39.815 | 108 | 61 | 3 | 274 | 381 | 11 | 114 | 2.70e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30515.t1 | AT1G63690 | 76.884 | 398 | 90 | 2 | 1 | 397 | 144 | 540 | 0.0 | 641 |
| MS.gene30515.t1 | AT1G63690 | 76.633 | 398 | 91 | 2 | 1 | 397 | 144 | 540 | 0.0 | 640 |
| MS.gene30515.t1 | AT1G01650 | 72.081 | 394 | 108 | 1 | 1 | 392 | 143 | 536 | 0.0 | 588 |
| MS.gene30515.t1 | AT1G01650 | 72.081 | 394 | 108 | 1 | 1 | 392 | 1 | 394 | 0.0 | 587 |
| MS.gene30515.t1 | AT1G01650 | 72.081 | 394 | 108 | 1 | 1 | 392 | 1 | 394 | 0.0 | 587 |
| MS.gene30515.t1 | AT1G01650 | 72.081 | 394 | 108 | 1 | 1 | 392 | 1 | 394 | 0.0 | 587 |
| MS.gene30515.t1 | AT2G43070 | 48.082 | 391 | 199 | 3 | 1 | 388 | 145 | 534 | 4.57e-120 | 359 |
| MS.gene30515.t1 | AT2G43070 | 48.082 | 391 | 199 | 3 | 1 | 388 | 204 | 593 | 1.95e-119 | 359 |
| MS.gene30515.t1 | AT2G43070 | 46.970 | 396 | 202 | 2 | 1 | 388 | 145 | 540 | 1.22e-118 | 355 |
| MS.gene30515.t1 | AT2G43070 | 46.970 | 396 | 202 | 2 | 1 | 388 | 204 | 599 | 4.27e-118 | 356 |
| MS.gene30515.t1 | AT1G05820 | 43.750 | 384 | 215 | 1 | 1 | 383 | 1 | 384 | 6.84e-117 | 346 |
| MS.gene30515.t1 | AT1G05820 | 43.750 | 384 | 215 | 1 | 1 | 383 | 141 | 524 | 3.79e-115 | 346 |
| MS.gene30515.t1 | AT1G05820 | 44.475 | 362 | 200 | 1 | 1 | 361 | 141 | 502 | 7.56e-111 | 334 |
| MS.gene30515.t1 | AT1G05820 | 39.394 | 264 | 159 | 1 | 1 | 263 | 141 | 404 | 4.18e-62 | 206 |
| MS.gene30515.t1 | AT4G33410 | 25.419 | 358 | 207 | 11 | 61 | 378 | 19 | 356 | 1.82e-22 | 98.2 |
| MS.gene30515.t1 | AT2G03120 | 32.796 | 186 | 107 | 6 | 191 | 376 | 149 | 316 | 5.49e-21 | 93.6 |
Find 83 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTCCTTTACGACTTATTT+TGG | 0.084815 | 6.4:+42282185 | MS.gene30515:CDS |
| ACTAAAGTTTCCGCGCATTT+TGG | 0.180661 | 6.4:+42282386 | MS.gene30515:CDS |
| ATATGAGGGCAGAATCTTTC+TGG | 0.221689 | 6.4:-42283840 | None:intergenic |
| TTGAATATGATAAGTTATTA+AGG | 0.239098 | 6.4:+42280088 | MS.gene30515:CDS |
| TGGGGTGGTTACAGTATTAT+AGG | 0.258545 | 6.4:+42282414 | MS.gene30515:CDS |
| CGCCCACGTCTTTAGTGTTT+GGG | 0.270449 | 6.4:-42280235 | None:intergenic |
| GGTTACAGTATTATAGGTTT+TGG | 0.286103 | 6.4:+42282420 | MS.gene30515:CDS |
| TAGAAACTACCTAGAGTAAA+TGG | 0.289399 | 6.4:-42283325 | None:intergenic |
| GCGCCCACGTCTTTAGTGTT+TGG | 0.289814 | 6.4:-42280236 | None:intergenic |
| TTGGTTGTTCTCTTCTGTAT+TGG | 0.324323 | 6.4:+42280368 | MS.gene30515:CDS |
| CGACCAGCATTCCAGGTAAA+AGG | 0.325622 | 6.4:-42282449 | None:intergenic |
| ACGAGATGCAGGCACAAAAC+TGG | 0.336889 | 6.4:+42279777 | MS.gene30515:CDS |
| TTGAAGTGACCATATCATTC+AGG | 0.337509 | 6.4:-42283891 | None:intergenic |
| CCAATATGATGCACACAATA+TGG | 0.360052 | 6.4:-42280037 | None:intergenic |
| GGCTTGATTCTCCGCTGTTA+TGG | 0.366404 | 6.4:-42283869 | None:intergenic |
| ACATAGCCGAAGTGTTTCTT+TGG | 0.372983 | 6.4:+42279998 | MS.gene30515:CDS |
| CATATTCAACAGCTGCTTCT+CGG | 0.384055 | 6.4:-42280074 | None:intergenic |
| GTACGTGGCGCTAAACTTGA+TGG | 0.388527 | 6.4:+42283267 | MS.gene30515:CDS |
| CATCATATTGCAGGTATGAT+TGG | 0.398459 | 6.4:+42283056 | MS.gene30515:intron |
| GCCGTGGTTCATTGAGGTTT+TGG | 0.402046 | 6.4:+42280349 | MS.gene30515:CDS |
| CCATATTGTGTGCATCATAT+TGG | 0.421360 | 6.4:+42280037 | MS.gene30515:CDS |
| TGAATATGATAAGTTATTAA+GGG | 0.425017 | 6.4:+42280089 | MS.gene30515:CDS |
| TCAATTTGTAAAGCATAAAC+AGG | 0.427740 | 6.4:-42280322 | None:intergenic |
| ATATTCAACAGCTGCTTCTC+GGG | 0.434703 | 6.4:-42280073 | None:intergenic |
| GAGAACGCGACCAGCATTCC+AGG | 0.435116 | 6.4:-42282456 | None:intergenic |
| CTTCTGTATTGGTGGGATAG+AGG | 0.444032 | 6.4:+42280379 | MS.gene30515:CDS |
| GGTGATAGAAGTGGAGAAGA+TGG | 0.448835 | 6.4:+42282351 | MS.gene30515:CDS |
| CGCGGAAACTTTAGTAACAT+TGG | 0.449559 | 6.4:-42282378 | None:intergenic |
| GCAGGGATTGCAAACTTGCT+TGG | 0.452931 | 6.4:+42280635 | MS.gene30515:intron |
| GTTGTTCTCTTCTGTATTGG+TGG | 0.458251 | 6.4:+42280371 | MS.gene30515:CDS |
| ATGCTTAAATCAGTTTCATC+AGG | 0.460592 | 6.4:-42279730 | None:intergenic |
| AAGTATATCTTGACCAATCC+AGG | 0.461118 | 6.4:-42281219 | None:intergenic |
| CGAAGTGTTTCTTTGGCTGA+TGG | 0.463549 | 6.4:+42280005 | MS.gene30515:CDS |
| ATGGAGTAACAGCCAAAGTC+AGG | 0.463986 | 6.4:-42281145 | None:intergenic |
| CTGTTATGGAGTCTGATATG+AGG | 0.471075 | 6.4:-42283855 | None:intergenic |
| TGTCAACGGTTGGTCGTCGT+GGG | 0.489220 | 6.4:-42279978 | None:intergenic |
| TTGTTCTCTTCTGTATTGGT+GGG | 0.493491 | 6.4:+42280372 | MS.gene30515:CDS |
| TGCTGGTCGCGTTCTCACTC+AGG | 0.495489 | 6.4:+42282463 | MS.gene30515:CDS |
| TTGTGGGCAATGTTAGCGTA+TGG | 0.498057 | 6.4:+42283112 | MS.gene30515:CDS |
| AGCTATCTCATACCTGACTT+TGG | 0.499182 | 6.4:+42281133 | MS.gene30515:CDS |
| ACGGCAAATGTTATACAGAA+TGG | 0.499653 | 6.4:-42281164 | None:intergenic |
| GTTATGCTCCCACGAGATGC+AGG | 0.499846 | 6.4:+42279766 | MS.gene30515:CDS |
| ATACGTTAAATTGCCTTTCG+TGG | 0.501733 | 6.4:+42281109 | MS.gene30515:CDS |
| GCAATGTTAGCGTATGGCTT+TGG | 0.502448 | 6.4:+42283118 | MS.gene30515:CDS |
| ATGCTGAAGAGTGCTTCATC+TGG | 0.504473 | 6.4:+42279805 | MS.gene30515:CDS |
| ATCATATTGGTCAGCGTGGA+GGG | 0.507505 | 6.4:+42280050 | MS.gene30515:CDS |
| TACGTTAAATTGCCTTTCGT+GGG | 0.507821 | 6.4:+42281110 | MS.gene30515:CDS |
| ATGTCAACGGTTGGTCGTCG+TGG | 0.509794 | 6.4:-42279979 | None:intergenic |
| ACTAAAGACGTGGGCGCTAG+TGG | 0.513567 | 6.4:+42280242 | MS.gene30515:CDS |
| GCAAAGAAGACCCTTGTAAG+TGG | 0.515201 | 6.4:+42283082 | MS.gene30515:CDS |
| TGAAGTGACCATATCATTCA+GGG | 0.517370 | 6.4:-42283890 | None:intergenic |
| TACATTGTTCCATTTACTCT+AGG | 0.518958 | 6.4:+42283316 | MS.gene30515:CDS |
| CAAGGAAAGCGTGATGATTG+TGG | 0.533485 | 6.4:+42282231 | MS.gene30515:CDS |
| TGGCGCTAAACTTGATGGAC+GGG | 0.535927 | 6.4:+42283272 | MS.gene30515:CDS |
| GGAACAATGTATAGCAGTGC+TGG | 0.542309 | 6.4:-42283304 | None:intergenic |
| TGTAGGGACCATTATTACAT+TGG | 0.570056 | 6.4:+42283773 | MS.gene30515:intron |
| ACACCCAAAATAAGTCGTAA+AGG | 0.574378 | 6.4:-42282189 | None:intergenic |
| CCCAAAATAAGTCGTAAAGG+AGG | 0.576927 | 6.4:-42282186 | None:intergenic |
| CTAAACTTGATGGACGGGCA+CGG | 0.583955 | 6.4:+42283277 | MS.gene30515:CDS |
| TGTTATGGAGTCTGATATGA+GGG | 0.595355 | 6.4:-42283854 | None:intergenic |
| CGTACATGTGTCTAATCTCA+AGG | 0.598110 | 6.4:+42281799 | MS.gene30515:CDS |
| CATCATATTGGTCAGCGTGG+AGG | 0.598250 | 6.4:+42280049 | MS.gene30515:CDS |
| GTAGCTCGAGGTGATAGAAG+TGG | 0.605988 | 6.4:+42282342 | MS.gene30515:CDS |
| ATTACATTGGCGCAAAAGCG+AGG | 0.607927 | 6.4:+42283786 | MS.gene30515:CDS |
| GTGGCGCTAAACTTGATGGA+CGG | 0.608093 | 6.4:+42283271 | MS.gene30515:CDS |
| ACTTCGGCTATGTCAACGGT+TGG | 0.615905 | 6.4:-42279988 | None:intergenic |
| ATAATACTGTAACCACCCCA+TGG | 0.617421 | 6.4:-42282411 | None:intergenic |
| AAACACTTCGGCTATGTCAA+CGG | 0.617468 | 6.4:-42279992 | None:intergenic |
| CCAAAATAAGTCGTAAAGGA+GGG | 0.618659 | 6.4:-42282185 | None:intergenic |
| GATGTCGCCGTGGTTCATTG+AGG | 0.629720 | 6.4:+42280343 | MS.gene30515:CDS |
| TCTCGTGGGAGCATAACAGC+AGG | 0.630235 | 6.4:-42279760 | None:intergenic |
| CCCCATGGATCCAAAATGCG+CGG | 0.631892 | 6.4:-42282396 | None:intergenic |
| TATGAGATAGCTCCCACGAA+AGG | 0.637307 | 6.4:-42281122 | None:intergenic |
| ACCAAAACCTCAATGAACCA+CGG | 0.637620 | 6.4:-42280350 | None:intergenic |
| CATCAGCCAAAGAAACACTT+CGG | 0.640104 | 6.4:-42280004 | None:intergenic |
| AGGTCTTCTAATCACGTACG+TGG | 0.640135 | 6.4:+42283252 | MS.gene30515:intron |
| AATCCCAAACACTAAAGACG+TGG | 0.645441 | 6.4:+42280232 | MS.gene30515:CDS |
| GTCAACGGTTGGTCGTCGTG+GGG | 0.657287 | 6.4:-42279977 | None:intergenic |
| ATCCCAAACACTAAAGACGT+GGG | 0.684791 | 6.4:+42280233 | MS.gene30515:CDS |
| TTTACAAATTGATGTCGCCG+TGG | 0.692028 | 6.4:+42280333 | MS.gene30515:CDS |
| TACCCGCTATAGGTAGCTCG+AGG | 0.696480 | 6.4:+42282330 | MS.gene30515:intron |
| GTGCATCATATTGGTCAGCG+TGG | 0.709346 | 6.4:+42280046 | MS.gene30515:CDS |
| CATATCAGACTCCATAACAG+CGG | 0.712457 | 6.4:+42283858 | MS.gene30515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTAAAATATGAAAAT+TGG | - | chr6.4:42283575-42283594 | None:intergenic | 10.0% |
| !! | TGAAAAATTAAGATAAATAA+AGG | - | chr6.4:42281342-42281361 | None:intergenic | 10.0% |
| !!! | ATTTATCTTAATTTTTCAAA+GGG | + | chr6.4:42281344-42281363 | MS.gene30515:intron | 10.0% |
| !!! | TATTTATCTTAATTTTTCAA+AGG | + | chr6.4:42281343-42281362 | MS.gene30515:intron | 10.0% |
| !!! | TTTTTAAAACACTTTTTTTT+AGG | - | chr6.4:42283434-42283453 | None:intergenic | 10.0% |
| !! | ATAAAAAATGAGTATTTGAA+GGG | - | chr6.4:42283011-42283030 | None:intergenic | 15.0% |
| !! | ATTAACCAAAATAAAAGAAA+TGG | - | chr6.4:42281740-42281759 | None:intergenic | 15.0% |
| !! | CATCTATTAAAAAATTGTAT+TGG | + | chr6.4:42280443-42280462 | MS.gene30515:intron | 15.0% |
| !! | TGAATATGATAAGTTATTAA+GGG | + | chr6.4:42280089-42280108 | MS.gene30515:CDS | 15.0% |
| !! | TGAATTACAAAAATTCATTT+AGG | - | chr6.4:42282939-42282958 | None:intergenic | 15.0% |
| !! | TTGAATATGATAAGTTATTA+AGG | + | chr6.4:42280088-42280107 | MS.gene30515:CDS | 15.0% |
| !!! | ACTTTTTTTCCTAAATTTTT+AGG | + | chr6.4:42283232-42283251 | MS.gene30515:intron | 15.0% |
| !!! | ATGAAAGAAACAATTTTATT+TGG | - | chr6.4:42280556-42280575 | None:intergenic | 15.0% |
| !!! | ATGTTTTATGAAAAAATAGT+AGG | + | chr6.4:42280790-42280809 | MS.gene30515:intron | 15.0% |
| !!! | CTGTTTATATTGTTTTTATA+TGG | + | chr6.4:42281667-42281686 | MS.gene30515:intron | 15.0% |
| !!! | CTTTGATTATTTTACAAAAT+AGG | + | chr6.4:42282138-42282157 | MS.gene30515:intron | 15.0% |
| !!! | GTATCTTATTTATTCATAAA+AGG | - | chr6.4:42282108-42282127 | None:intergenic | 15.0% |
| !!! | TTGTTTTCTATTTGTTATTA+TGG | - | chr6.4:42282803-42282822 | None:intergenic | 15.0% |
| !!! | TTTATCTTAATTTTTCAAAG+GGG | + | chr6.4:42281345-42281364 | MS.gene30515:intron | 15.0% |
| !! | AAAATTGAATATTGAGTCTA+AGG | - | chr6.4:42282541-42282560 | None:intergenic | 20.0% |
| !! | AAGAGATTAACATTTAATTC+AGG | - | chr6.4:42280892-42280911 | None:intergenic | 20.0% |
| !! | AGAGACAAAATAGATTATAA+AGG | - | chr6.4:42279838-42279857 | None:intergenic | 20.0% |
| !! | ATATATCATGTAGACAATAT+AGG | + | chr6.4:42281294-42281313 | MS.gene30515:intron | 20.0% |
| !! | ATTAGAAGACCTAAAAATTT+AGG | - | chr6.4:42283244-42283263 | None:intergenic | 20.0% |
| !! | CATAAAAAATGAGTATTTGA+AGG | - | chr6.4:42283012-42283031 | None:intergenic | 20.0% |
| !! | CTATATTAAATAGAAACTAC+AGG | - | chr6.4:42279881-42279900 | None:intergenic | 20.0% |
| !! | TAAAAAATGAGTATTTGAAG+GGG | - | chr6.4:42283010-42283029 | None:intergenic | 20.0% |
| !! | TACTATTTGTGACATTTAAA+CGG | - | chr6.4:42280837-42280856 | None:intergenic | 20.0% |
| !! | TAGTTAAATTGGTTATAGTA+GGG | + | chr6.4:42283728-42283747 | MS.gene30515:intron | 20.0% |
| !! | TTAAATGTCACAAATAGTAT+AGG | + | chr6.4:42280838-42280857 | MS.gene30515:intron | 20.0% |
| !! | TTCCACTATATATACTATAA+GGG | + | chr6.4:42281508-42281527 | MS.gene30515:intron | 20.0% |
| !!! | ATAGTTTTATACATCAATGT+AGG | + | chr6.4:42283756-42283775 | MS.gene30515:intron | 20.0% |
| !!! | GATTATTTTACAAAATAGGT+TGG | + | chr6.4:42282142-42282161 | MS.gene30515:intron | 20.0% |
| !!! | TAGTTTTATACATCAATGTA+GGG | + | chr6.4:42283757-42283776 | MS.gene30515:intron | 20.0% |
| !!! | TATAATCTATTTTGTCTCTT+TGG | + | chr6.4:42279839-42279858 | MS.gene30515:intron | 20.0% |
| !!! | TTATCTTAATTTTTCAAAGG+GGG | + | chr6.4:42281346-42281365 | MS.gene30515:intron | 20.0% |
| !!! | TTATTTTGGTTAATCTAACA+GGG | + | chr6.4:42281746-42281765 | MS.gene30515:intron | 20.0% |
| !!! | TTTATTTTGGTTAATCTAAC+AGG | + | chr6.4:42281745-42281764 | MS.gene30515:intron | 20.0% |
| ! | AAATGACACTCTTAAATGTA+AGG | - | chr6.4:42280919-42280938 | None:intergenic | 25.0% |
| ! | AAATTTCCAATCCACAAAAT+TGG | - | chr6.4:42282578-42282597 | None:intergenic | 25.0% |
| ! | AACCAAAATAAAAGAAATGG+TGG | - | chr6.4:42281737-42281756 | None:intergenic | 25.0% |
| ! | AATTTCCAATCCACAAAATT+GGG | - | chr6.4:42282577-42282596 | None:intergenic | 25.0% |
| ! | ACTATTTGTGACATTTAAAC+GGG | - | chr6.4:42280836-42280855 | None:intergenic | 25.0% |
| ! | CTTGTTAAGATTGTTGAATT+CGG | + | chr6.4:42281869-42281888 | MS.gene30515:intron | 25.0% |
| ! | GTAGTTAAATTGGTTATAGT+AGG | + | chr6.4:42283727-42283746 | MS.gene30515:intron | 25.0% |
| ! | GTGCTTTACATATTAAGTTA+TGG | + | chr6.4:42281381-42281400 | MS.gene30515:intron | 25.0% |
| ! | GTTCCACTATATATACTATA+AGG | + | chr6.4:42281507-42281526 | MS.gene30515:intron | 25.0% |
| ! | TATTAAGATGTAGTACATTC+TGG | - | chr6.4:42281582-42281601 | None:intergenic | 25.0% |
| ! | TCAATTTGTAAAGCATAAAC+AGG | - | chr6.4:42280325-42280344 | None:intergenic | 25.0% |
| ! | TCACAAATAGTATAGGATAT+GGG | + | chr6.4:42280845-42280864 | MS.gene30515:intron | 25.0% |
| ! | TGAGTTTAATAACTTGAGAA+AGG | + | chr6.4:42282602-42282621 | MS.gene30515:intron | 25.0% |
| ! | TTAATAACTTGAGAAAGGTA+AGG | + | chr6.4:42282607-42282626 | MS.gene30515:intron | 25.0% |
| ! | TTCCCTTATAGTATATATAG+TGG | - | chr6.4:42281513-42281532 | None:intergenic | 25.0% |
| !! | AAAAACCAAACATAACCTTT+TGG | + | chr6.4:42283450-42283469 | MS.gene30515:intron | 25.0% |
| !! | ATTTAATTCAGGAGTACAAT+AGG | - | chr6.4:42280881-42280900 | None:intergenic | 25.0% |
| !! | TATAGTATATATAGTGGAAC+TGG | - | chr6.4:42281507-42281526 | None:intergenic | 25.0% |
| !! | TATCAAAGTACTTCAAAAAC+TGG | - | chr6.4:42281912-42281931 | None:intergenic | 25.0% |
| !! | TCCTATTATATCCTTTTCAA+CGG | + | chr6.4:42280987-42281006 | MS.gene30515:intron | 25.0% |
| !! | TTCACCATTCTAAAAACAAA+TGG | + | chr6.4:42282955-42282974 | MS.gene30515:intron | 25.0% |
| !! | TTTTATACTTGCAATGATGA+CGG | + | chr6.4:42281691-42281710 | MS.gene30515:intron | 25.0% |
| !!! | AACACTTTTTTTTAGGCAAT+TGG | - | chr6.4:42283427-42283446 | None:intergenic | 25.0% |
| !!! | AACCACCATTTCTTTTATTT+TGG | + | chr6.4:42281732-42281751 | MS.gene30515:intron | 25.0% |
| !!! | AATTTTCAGTCTTTCTAGTA+AGG | + | chr6.4:42282666-42282685 | MS.gene30515:intron | 25.0% |
| !!! | ACACTTTTTTTTAGGCAATT+GGG | - | chr6.4:42283426-42283445 | None:intergenic | 25.0% |
| !!! | ATAGTAGGAAAACTCTTTTT+TGG | + | chr6.4:42280805-42280824 | MS.gene30515:intron | 25.0% |
| !!! | ATGTTTTTAAAACAGTGTTC+AGG | + | chr6.4:42283686-42283705 | MS.gene30515:intron | 25.0% |
| !!! | ATTTTCAGTCTTTCTAGTAA+GGG | + | chr6.4:42282667-42282686 | MS.gene30515:intron | 25.0% |
| !!! | GAAACAATTTTATTTGGTGA+CGG | - | chr6.4:42280550-42280569 | None:intergenic | 25.0% |
| !!! | TAGTAGGAAAACTCTTTTTT+GGG | + | chr6.4:42280806-42280825 | MS.gene30515:intron | 25.0% |
| !!! | TATAACATTTGCCGTTTTTT+GGG | + | chr6.4:42281172-42281191 | MS.gene30515:CDS | 25.0% |
| !!! | TCTTCCATTTGTTTTTAGAA+TGG | - | chr6.4:42282962-42282981 | None:intergenic | 25.0% |
| AAAGATCAGATTGGATCTTT+AGG | + | chr6.4:42280757-42280776 | MS.gene30515:intron | 30.0% | |
| AGATATACTTAAGACATGCA+GGG | - | chr6.4:42282518-42282537 | None:intergenic | 30.0% | |
| AGTTTGTCTATTGAACTGTT+TGG | + | chr6.4:42282712-42282731 | MS.gene30515:intron | 30.0% | |
| ATCTGATCTTTACATCAAAG+AGG | - | chr6.4:42280748-42280767 | None:intergenic | 30.0% | |
| ATGCTTAAATCAGTTTCATC+AGG | - | chr6.4:42279733-42279752 | None:intergenic | 30.0% | |
| ATTAAGTTTCTTCTCCAAAC+AGG | + | chr6.4:42282912-42282931 | MS.gene30515:intron | 30.0% | |
| CTTTGATGTAAAGATCAGAT+TGG | + | chr6.4:42280748-42280767 | MS.gene30515:intron | 30.0% | |
| GAATATTTACTGACACAAAC+AGG | - | chr6.4:42282033-42282052 | None:intergenic | 30.0% | |
| GTCACAAATAGTATAGGATA+TGG | + | chr6.4:42280844-42280863 | MS.gene30515:intron | 30.0% | |
| GTCTGGTATATCATCTTTAA+TGG | + | chr6.4:42280674-42280693 | MS.gene30515:intron | 30.0% | |
| GTTGAAAAATTCCGTTGAAA+AGG | - | chr6.4:42281001-42281020 | None:intergenic | 30.0% | |
| GTTTGTCTATTGAACTGTTT+GGG | + | chr6.4:42282713-42282732 | MS.gene30515:intron | 30.0% | |
| TAAAAACAAATGGAAGAGCT+AGG | + | chr6.4:42282965-42282984 | MS.gene30515:intron | 30.0% | |
| TACATTGTTCCATTTACTCT+AGG | + | chr6.4:42283316-42283335 | MS.gene30515:CDS | 30.0% | |
| TAGAAACTACCTAGAGTAAA+TGG | - | chr6.4:42283328-42283347 | None:intergenic | 30.0% | |
| TATAAGGGAAGAATATGCTT+GGG | + | chr6.4:42281523-42281542 | MS.gene30515:intron | 30.0% | |
| TCCGTTGAAAAGGATATAAT+AGG | - | chr6.4:42280991-42281010 | None:intergenic | 30.0% | |
| TCTACATGATATATCTGAAG+AGG | - | chr6.4:42281288-42281307 | None:intergenic | 30.0% | |
| TGTAGACAATATAGGTCTAA+AGG | + | chr6.4:42281302-42281321 | MS.gene30515:intron | 30.0% | |
| TTAAGTTTCTTCTCCAAACA+GGG | + | chr6.4:42282913-42282932 | MS.gene30515:intron | 30.0% | |
| TTGGTCAAGATATACTTGTA+AGG | + | chr6.4:42281225-42281244 | MS.gene30515:intron | 30.0% | |
| ! | ATGTAGTACATTCTGGAAAA+AGG | - | chr6.4:42281575-42281594 | None:intergenic | 30.0% |
| ! | GGTTACAGTATTATAGGTTT+TGG | + | chr6.4:42282420-42282439 | MS.gene30515:CDS | 30.0% |
| !! | ACAAAAAGTATCCACTTACA+AGG | - | chr6.4:42283096-42283115 | None:intergenic | 30.0% |
| !! | CAAAAAGTATCCACTTACAA+GGG | - | chr6.4:42283095-42283114 | None:intergenic | 30.0% |
| !! | TGTAAGTGGATACTTTTTGT+GGG | + | chr6.4:42283096-42283115 | MS.gene30515:CDS | 30.0% |
| !! | TTAATTTTTCAAAGGGGGAA+GGG | + | chr6.4:42281351-42281370 | MS.gene30515:intron | 30.0% |
| !! | TTGTAAGTGGATACTTTTTG+TGG | + | chr6.4:42283095-42283114 | MS.gene30515:CDS | 30.0% |
| !!! | AGTAGGAAAACTCTTTTTTG+GGG | + | chr6.4:42280807-42280826 | MS.gene30515:intron | 30.0% |
| !!! | GTATAACATTTGCCGTTTTT+TGG | + | chr6.4:42281171-42281190 | MS.gene30515:CDS | 30.0% |
| !!! | TTCTCACTCAGGTTTTATTT+CGG | + | chr6.4:42282474-42282493 | MS.gene30515:intron | 30.0% |
| AAATTCATTTAGGCCCTGTT+TGG | - | chr6.4:42282929-42282948 | None:intergenic | 35.0% | |
| AACATTTCCACCATGATGTT+AGG | + | chr6.4:42281018-42281037 | MS.gene30515:intron | 35.0% | |
| AAGTATATCTTGACCAATCC+AGG | - | chr6.4:42281222-42281241 | None:intergenic | 35.0% | |
| ACACCCAAAATAAGTCGTAA+AGG | - | chr6.4:42282192-42282211 | None:intergenic | 35.0% | |
| ACGGCAAATGTTATACAGAA+TGG | - | chr6.4:42281167-42281186 | None:intergenic | 35.0% | |
| AGAAAACACATGGTTAGAGA+TGG | - | chr6.4:42280608-42280627 | None:intergenic | 35.0% | |
| ATACGTTAAATTGCCTTTCG+TGG | + | chr6.4:42281109-42281128 | MS.gene30515:CDS | 35.0% | |
| CATCATATTGCAGGTATGAT+TGG | + | chr6.4:42283056-42283075 | MS.gene30515:intron | 35.0% | |
| CATTCTACAACTTACCATTC+AGG | - | chr6.4:42280947-42280966 | None:intergenic | 35.0% | |
| CCAAAATAAGTCGTAAAGGA+GGG | - | chr6.4:42282188-42282207 | None:intergenic | 35.0% | |
| CCAATATGATGCACACAATA+TGG | - | chr6.4:42280040-42280059 | None:intergenic | 35.0% | |
| CCATATTGTGTGCATCATAT+TGG | + | chr6.4:42280037-42280056 | MS.gene30515:CDS | 35.0% | |
| CTATAAGGGAAGAATATGCT+TGG | + | chr6.4:42281522-42281541 | MS.gene30515:intron | 35.0% | |
| CTGTTCAACCATGGTTTAAT+CGG | - | chr6.4:42283623-42283642 | None:intergenic | 35.0% | |
| CTTACACAATCATTGTACTG+TGG | + | chr6.4:42281834-42281853 | MS.gene30515:intron | 35.0% | |
| GAGATATACTTAAGACATGC+AGG | - | chr6.4:42282519-42282538 | None:intergenic | 35.0% | |
| TACGTTAAATTGCCTTTCGT+GGG | + | chr6.4:42281110-42281129 | MS.gene30515:CDS | 35.0% | |
| TCGAACCAAAAGGTTATGTT+TGG | - | chr6.4:42283458-42283477 | None:intergenic | 35.0% | |
| TCGACAATACATCATATTGC+AGG | + | chr6.4:42283047-42283066 | MS.gene30515:intron | 35.0% | |
| TCGATAAACTGCCCAAAAAA+CGG | - | chr6.4:42281186-42281205 | None:intergenic | 35.0% | |
| TGCAGATACAAGAAAACACA+TGG | - | chr6.4:42280618-42280637 | None:intergenic | 35.0% | |
| TGTAGGGACCATTATTACAT+TGG | + | chr6.4:42283773-42283792 | MS.gene30515:intron | 35.0% | |
| TGTTATGGAGTCTGATATGA+GGG | - | chr6.4:42283857-42283876 | None:intergenic | 35.0% | |
| TTGGTTGTTCTCTTCTGTAT+TGG | + | chr6.4:42280368-42280387 | MS.gene30515:CDS | 35.0% | |
| TTTGTCATCCGATTAAACCA+TGG | + | chr6.4:42283612-42283631 | MS.gene30515:intron | 35.0% | |
| ! | ATCGAGACAAATCATTTTCC+TGG | + | chr6.4:42281201-42281220 | MS.gene30515:CDS | 35.0% |
| ! | ATGTGTTTTCTTGTATCTGC+AGG | + | chr6.4:42280617-42280636 | MS.gene30515:intron | 35.0% |
| ! | CTAAAGATTTTGTGGAAGAG+CGG | + | chr6.4:42283813-42283832 | MS.gene30515:CDS | 35.0% |
| ! | CTTTTGCGCCAATGTAATAA+TGG | - | chr6.4:42283784-42283803 | None:intergenic | 35.0% |
| ! | GAATTAGTTTCTTCTACACG+TGG | - | chr6.4:42281050-42281069 | None:intergenic | 35.0% |
| ! | GACAAATCATTTTCCTGGAT+TGG | + | chr6.4:42281206-42281225 | MS.gene30515:CDS | 35.0% |
| ! | GAGGAGAACTAAAGATTTTG+TGG | + | chr6.4:42283805-42283824 | MS.gene30515:CDS | 35.0% |
| ! | GCTTTTCCTTTTTACAGTGT+CGG | + | chr6.4:42279942-42279961 | MS.gene30515:intron | 35.0% |
| ! | TGTCTCTTTGGCATATTTTG+TGG | + | chr6.4:42279851-42279870 | MS.gene30515:intron | 35.0% |
| ! | TGTGTTTTCTTGTATCTGCA+GGG | + | chr6.4:42280618-42280637 | MS.gene30515:intron | 35.0% |
| ! | TTGTTCTCTTCTGTATTGGT+GGG | + | chr6.4:42280372-42280391 | MS.gene30515:CDS | 35.0% |
| !! | CCTCCTTTACGACTTATTTT+GGG | + | chr6.4:42282186-42282205 | MS.gene30515:CDS | 35.0% |
| !! | CTTAATTTTTCAAAGGGGGA+AGG | + | chr6.4:42281350-42281369 | MS.gene30515:intron | 35.0% |
| !!! | CTGTCGAATCTTGTTTTTAC+AGG | + | chr6.4:42280196-42280215 | MS.gene30515:intron | 35.0% |
| !!! | GTGTCATTTTCAAACCTGAA+TGG | + | chr6.4:42280930-42280949 | MS.gene30515:intron | 35.0% |
| !!! | TGAATTCGGTTACTTTTCTG+TGG | + | chr6.4:42281883-42281902 | MS.gene30515:intron | 35.0% |
| AAACACTTCGGCTATGTCAA+CGG | - | chr6.4:42279995-42280014 | None:intergenic | 40.0% | |
| AACAAGGTTTGAACTGCAGT+TGG | + | chr6.4:42283544-42283563 | MS.gene30515:intron | 40.0% | |
| AACCAGACTGCATTGTAACA+GGG | - | chr6.4:42283523-42283542 | None:intergenic | 40.0% | |
| AATCCCAAACACTAAAGACG+TGG | + | chr6.4:42280232-42280251 | MS.gene30515:CDS | 40.0% | |
| ACCAAAACCTCAATGAACCA+CGG | - | chr6.4:42280353-42280372 | None:intergenic | 40.0% | |
| AGCTATCTCATACCTGACTT+TGG | + | chr6.4:42281133-42281152 | MS.gene30515:CDS | 40.0% | |
| AGGTAGGTAAAACTTGGCTA+AGG | - | chr6.4:42281453-42281472 | None:intergenic | 40.0% | |
| ATAATACTGTAACCACCCCA+TGG | - | chr6.4:42282414-42282433 | None:intergenic | 40.0% | |
| ATATGAGGGCAGAATCTTTC+TGG | - | chr6.4:42283843-42283862 | None:intergenic | 40.0% | |
| ATATTCAACAGCTGCTTCTC+GGG | - | chr6.4:42280076-42280095 | None:intergenic | 40.0% | |
| ATCCCAAACACTAAAGACGT+GGG | + | chr6.4:42280233-42280252 | MS.gene30515:CDS | 40.0% | |
| ATCTAATGCCTTCTTCTGCA+TGG | - | chr6.4:42280479-42280498 | None:intergenic | 40.0% | |
| ATTCGACAGTAAGTAGTCGT+AGG | - | chr6.4:42280185-42280204 | None:intergenic | 40.0% | |
| CAGAAGATTACACGAGGAAA+GGG | - | chr6.4:42280580-42280599 | None:intergenic | 40.0% | |
| CATATCAGACTCCATAACAG+CGG | + | chr6.4:42283858-42283877 | MS.gene30515:CDS | 40.0% | |
| CATATTCAACAGCTGCTTCT+CGG | - | chr6.4:42280077-42280096 | None:intergenic | 40.0% | |
| CATCAGCCAAAGAAACACTT+CGG | - | chr6.4:42280007-42280026 | None:intergenic | 40.0% | |
| CCCAAAATAAGTCGTAAAGG+AGG | - | chr6.4:42282189-42282208 | None:intergenic | 40.0% | |
| CGCGGAAACTTTAGTAACAT+TGG | - | chr6.4:42282381-42282400 | None:intergenic | 40.0% | |
| CGTACATGTGTCTAATCTCA+AGG | + | chr6.4:42281799-42281818 | MS.gene30515:CDS | 40.0% | |
| CTGTTATGGAGTCTGATATG+AGG | - | chr6.4:42283858-42283877 | None:intergenic | 40.0% | |
| GAACAAACCTAACATCATGG+TGG | - | chr6.4:42281028-42281047 | None:intergenic | 40.0% | |
| GTGGAACAAACCTAACATCA+TGG | - | chr6.4:42281031-42281050 | None:intergenic | 40.0% | |
| GTTCAATCGATCGAACCAAA+AGG | - | chr6.4:42283468-42283487 | None:intergenic | 40.0% | |
| GTTGTTCTCTTCTGTATTGG+TGG | + | chr6.4:42280371-42280390 | MS.gene30515:CDS | 40.0% | |
| TAAGACATGCAGGGACAAAT+CGG | - | chr6.4:42282509-42282528 | None:intergenic | 40.0% | |
| TAGTAAGGGTCTGTTAGGAT+TGG | + | chr6.4:42282681-42282700 | MS.gene30515:intron | 40.0% | |
| TGGGGTGGTTACAGTATTAT+AGG | + | chr6.4:42282414-42282433 | MS.gene30515:CDS | 40.0% | |
| TTCCTTACATTACCCGCTAT+AGG | + | chr6.4:42282320-42282339 | MS.gene30515:intron | 40.0% | |
| TTTACAAATTGATGTCGCCG+TGG | + | chr6.4:42280333-42280352 | MS.gene30515:CDS | 40.0% | |
| ! | ACAAACGTGACTCTAGCTTA+AGG | - | chr6.4:42280142-42280161 | None:intergenic | 40.0% |
| ! | ACATAGCCGAAGTGTTTCTT+TGG | + | chr6.4:42279998-42280017 | MS.gene30515:CDS | 40.0% |
| ! | ACTAAAGTTTCCGCGCATTT+TGG | + | chr6.4:42282386-42282405 | MS.gene30515:CDS | 40.0% |
| ! | CCCTCCTTTACGACTTATTT+TGG | + | chr6.4:42282185-42282204 | MS.gene30515:CDS | 40.0% |
| ! | CGTGTCGAAGAAGTTTTTCA+AGG | + | chr6.4:42282213-42282232 | MS.gene30515:CDS | 40.0% |
| ! | CTAAGGATTTTTCCAGTCAG+GGG | - | chr6.4:42281436-42281455 | None:intergenic | 40.0% |
| ! | CTTTCTAGTAAGGGTCTGTT+AGG | + | chr6.4:42282676-42282695 | MS.gene30515:intron | 40.0% |
| ! | GCTAAGGATTTTTCCAGTCA+GGG | - | chr6.4:42281437-42281456 | None:intergenic | 40.0% |
| ! | TTTGGAGACATCCTTTTACC+TGG | + | chr6.4:42282438-42282457 | MS.gene30515:CDS | 40.0% |
| !! | TACCTATAGCGGGTAATGTA+AGG | - | chr6.4:42282325-42282344 | None:intergenic | 40.0% |
| AGGGAAGAATATGCTTGGGT+TGG | + | chr6.4:42281527-42281546 | MS.gene30515:intron | 45.0% | |
| AGGTCTTCTAATCACGTACG+TGG | + | chr6.4:42283252-42283271 | MS.gene30515:intron | 45.0% | |
| ATCATATTGGTCAGCGTGGA+GGG | + | chr6.4:42280050-42280069 | MS.gene30515:CDS | 45.0% | |
| ATCGAACCAGTAAGACCTTC+AGG | - | chr6.4:42283658-42283677 | None:intergenic | 45.0% | |
| ATGGAGTAACAGCCAAAGTC+AGG | - | chr6.4:42281148-42281167 | None:intergenic | 45.0% | |
| ATTACATTGGCGCAAAAGCG+AGG | + | chr6.4:42283786-42283805 | MS.gene30515:CDS | 45.0% | |
| CAACCAGACTGCATTGTAAC+AGG | - | chr6.4:42283524-42283543 | None:intergenic | 45.0% | |
| CAATGCAGTCTGGTTGAACA+AGG | + | chr6.4:42283528-42283547 | MS.gene30515:intron | 45.0% | |
| CAGATCGAACCATAACCTGA+AGG | + | chr6.4:42283640-42283659 | MS.gene30515:intron | 45.0% | |
| CCAATCCACAAAATTGGGAG+TGG | - | chr6.4:42282572-42282591 | None:intergenic | 45.0% | |
| CCATAACCTGAAGGTCTTAC+TGG | + | chr6.4:42283649-42283668 | MS.gene30515:intron | 45.0% | |
| CGTTATGTCCATGCAGAAGA+AGG | + | chr6.4:42280468-42280487 | MS.gene30515:intron | 45.0% | |
| GACCAAACTAACCACGAAAC+CGG | - | chr6.4:42283501-42283520 | None:intergenic | 45.0% | |
| GCAAAGAAGACCCTTGTAAG+TGG | + | chr6.4:42283082-42283101 | MS.gene30515:CDS | 45.0% | |
| GCAATGTTAGCGTATGGCTT+TGG | + | chr6.4:42283118-42283137 | MS.gene30515:CDS | 45.0% | |
| GCAGAAGATTACACGAGGAA+AGG | - | chr6.4:42280581-42280600 | None:intergenic | 45.0% | |
| GCTAAGCAGAAGATTACACG+AGG | - | chr6.4:42280586-42280605 | None:intergenic | 45.0% | |
| GCTGAACCGACACTGTAAAA+AGG | - | chr6.4:42279951-42279970 | None:intergenic | 45.0% | |
| GGAACAATGTATAGCAGTGC+TGG | - | chr6.4:42283307-42283326 | None:intergenic | 45.0% | |
| GGGAAGAATATGCTTGGGTT+GGG | + | chr6.4:42281528-42281547 | MS.gene30515:intron | 45.0% | |
| GGTGATAGAAGTGGAGAAGA+TGG | + | chr6.4:42282351-42282370 | MS.gene30515:CDS | 45.0% | |
| TATGAGATAGCTCCCACGAA+AGG | - | chr6.4:42281125-42281144 | None:intergenic | 45.0% | |
| TGGTTCGATCTGTTCAACCA+TGG | - | chr6.4:42283632-42283651 | None:intergenic | 45.0% | |
| TTGTGGGCAATGTTAGCGTA+TGG | + | chr6.4:42283112-42283131 | MS.gene30515:CDS | 45.0% | |
| ! | CAAGGAAAGCGTGATGATTG+TGG | + | chr6.4:42282231-42282250 | MS.gene30515:CDS | 45.0% |
| ! | CATCCTTTTACCTGGAATGC+TGG | + | chr6.4:42282446-42282465 | MS.gene30515:CDS | 45.0% |
| ! | CCACTCCCAATTTTGTGGAT+TGG | + | chr6.4:42282569-42282588 | MS.gene30515:intron | 45.0% |
| ! | CCAGTAAGACCTTCAGGTTA+TGG | - | chr6.4:42283652-42283671 | None:intergenic | 45.0% |
| ! | CGAAGTGTTTCTTTGGCTGA+TGG | + | chr6.4:42280005-42280024 | MS.gene30515:CDS | 45.0% |
| ! | CTAATTCTGTTTTCCCGTGC+AGG | + | chr6.4:42281063-42281082 | MS.gene30515:intron | 45.0% |
| ! | CTTCTGTATTGGTGGGATAG+AGG | + | chr6.4:42280379-42280398 | MS.gene30515:CDS | 45.0% |
| ! | GCTTGGTTGCACTTTTGTCA+AGG | + | chr6.4:42280652-42280671 | MS.gene30515:CDS | 45.0% |
| ! | GGAAGAATATGCTTGGGTTG+GGG | + | chr6.4:42281529-42281548 | MS.gene30515:intron | 45.0% |
| ! | GGCTAAGGATTTTTCCAGTC+AGG | - | chr6.4:42281438-42281457 | None:intergenic | 45.0% |
| ! | GTTGCACTTTTGTCAAGGTC+TGG | + | chr6.4:42280657-42280676 | MS.gene30515:intron | 45.0% |
| !! | ATGCTGAAGAGTGCTTCATC+TGG | + | chr6.4:42279805-42279824 | MS.gene30515:CDS | 45.0% |
| !!! | TTATAATAATTTTTTTATCA+AGG | + | chr6.4:42283364-42283383 | MS.gene30515:intron | 5.0% |
| AAACTAACCACGAAACCGGC+TGG | - | chr6.4:42283497-42283516 | None:intergenic | 50.0% | |
| ACGAGATGCAGGCACAAAAC+TGG | + | chr6.4:42279777-42279796 | MS.gene30515:CDS | 50.0% | |
| ACTTCGGCTATGTCAACGGT+TGG | - | chr6.4:42279991-42280010 | None:intergenic | 50.0% | |
| CAAGCCTAGTAACCGGTGTT+CGG | - | chr6.4:42281481-42281500 | None:intergenic | 50.0% | |
| CATCATATTGGTCAGCGTGG+AGG | + | chr6.4:42280049-42280068 | MS.gene30515:CDS | 50.0% | |
| CGACCAGCATTCCAGGTAAA+AGG | - | chr6.4:42282452-42282471 | None:intergenic | 50.0% | |
| CGCCCACGTCTTTAGTGTTT+GGG | - | chr6.4:42280238-42280257 | None:intergenic | 50.0% | |
| CTGGAGACAAGCCTAGTAAC+CGG | - | chr6.4:42281488-42281507 | None:intergenic | 50.0% | |
| GCTGGGAGGTAGGTAAAACT+TGG | - | chr6.4:42281459-42281478 | None:intergenic | 50.0% | |
| GGCTTGATTCTCCGCTGTTA+TGG | - | chr6.4:42283872-42283891 | None:intergenic | 50.0% | |
| GTACGTGGCGCTAAACTTGA+TGG | + | chr6.4:42283267-42283286 | MS.gene30515:CDS | 50.0% | |
| GTAGCTCGAGGTGATAGAAG+TGG | + | chr6.4:42282342-42282361 | MS.gene30515:CDS | 50.0% | |
| GTCCCTGTTACAATGCAGTC+TGG | + | chr6.4:42283518-42283537 | MS.gene30515:intron | 50.0% | |
| GTGCATCATATTGGTCAGCG+TGG | + | chr6.4:42280046-42280065 | MS.gene30515:CDS | 50.0% | |
| GTGGCGCTAAACTTGATGGA+CGG | + | chr6.4:42283271-42283290 | MS.gene30515:CDS | 50.0% | |
| TCACCTCGAGCTACCTATAG+CGG | - | chr6.4:42282336-42282355 | None:intergenic | 50.0% | |
| TCCAGTCAGGGGTTGAACTT+GGG | - | chr6.4:42281425-42281444 | None:intergenic | 50.0% | |
| TTCCAGTCAGGGGTTGAACT+TGG | - | chr6.4:42281426-42281445 | None:intergenic | 50.0% | |
| ! | AGCCGGTTTCGTGGTTAGTT+TGG | + | chr6.4:42283496-42283515 | MS.gene30515:intron | 50.0% |
| ! | ATTCTGTTTTCCCGTGCAGG+TGG | + | chr6.4:42281066-42281085 | MS.gene30515:intron | 50.0% |
| ! | CTAAACTTGATGGACGGGCA+CGG | + | chr6.4:42283277-42283296 | MS.gene30515:CDS | 50.0% |
| ! | GACGACCACTCCCAATTTTG+TGG | + | chr6.4:42282564-42282583 | MS.gene30515:intron | 50.0% |
| ! | GCAGGGATTGCAAACTTGCT+TGG | + | chr6.4:42280635-42280654 | MS.gene30515:intron | 50.0% |
| ! | GCCGTGGTTCATTGAGGTTT+TGG | + | chr6.4:42280349-42280368 | MS.gene30515:CDS | 50.0% |
| ! | GTTTTGTGCCTGCATCTCGT+GGG | - | chr6.4:42279777-42279796 | None:intergenic | 50.0% |
| ! | TCCGCGCATTTTGGATCCAT+GGG | + | chr6.4:42282395-42282414 | MS.gene30515:CDS | 50.0% |
| ! | TGGCGCTAAACTTGATGGAC+GGG | + | chr6.4:42283272-42283291 | MS.gene30515:CDS | 50.0% |
| ! | TTCCGCGCATTTTGGATCCA+TGG | + | chr6.4:42282394-42282413 | MS.gene30515:CDS | 50.0% |
| !! | AGTTTTGTGCCTGCATCTCG+TGG | - | chr6.4:42279778-42279797 | None:intergenic | 50.0% |
| ACCCAAGTTCAACCCCTGAC+TGG | + | chr6.4:42281421-42281440 | MS.gene30515:intron | 55.0% | |
| ACTAAAGACGTGGGCGCTAG+TGG | + | chr6.4:42280242-42280261 | MS.gene30515:CDS | 55.0% | |
| CACCTCGAGCTACCTATAGC+GGG | - | chr6.4:42282335-42282354 | None:intergenic | 55.0% | |
| CATGCTTGAACCACCTGCAC+GGG | - | chr6.4:42281079-42281098 | None:intergenic | 55.0% | |
| CCCCATGGATCCAAAATGCG+CGG | - | chr6.4:42282399-42282418 | None:intergenic | 55.0% | |
| CGATTGAACCGAGAACCAGC+CGG | + | chr6.4:42283479-42283498 | MS.gene30515:intron | 55.0% | |
| CTAGTAACCGGTGTTCGGCT+GGG | - | chr6.4:42281476-42281495 | None:intergenic | 55.0% | |
| GATGTCGCCGTGGTTCATTG+AGG | + | chr6.4:42280343-42280362 | MS.gene30515:CDS | 55.0% | |
| GCATGCTTGAACCACCTGCA+CGG | - | chr6.4:42281080-42281099 | None:intergenic | 55.0% | |
| GCGCCCACGTCTTTAGTGTT+TGG | - | chr6.4:42280239-42280258 | None:intergenic | 55.0% | |
| GTTATGCTCCCACGAGATGC+AGG | + | chr6.4:42279766-42279785 | MS.gene30515:CDS | 55.0% | |
| TACCCGCTATAGGTAGCTCG+AGG | + | chr6.4:42282330-42282349 | MS.gene30515:intron | 55.0% | |
| ! | ATGTCAACGGTTGGTCGTCG+TGG | - | chr6.4:42279982-42280001 | None:intergenic | 55.0% |
| ! | CCGCGCATTTTGGATCCATG+GGG | + | chr6.4:42282396-42282415 | MS.gene30515:CDS | 55.0% |
| ! | CGCATTTTGGATCCATGGGG+TGG | + | chr6.4:42282399-42282418 | MS.gene30515:CDS | 55.0% |
| ! | TCTCGTGGGAGCATAACAGC+AGG | - | chr6.4:42279763-42279782 | None:intergenic | 55.0% |
| ! | TGTCAACGGTTGGTCGTCGT+GGG | - | chr6.4:42279981-42280000 | None:intergenic | 55.0% |
| CCTAGTAACCGGTGTTCGGC+TGG | - | chr6.4:42281477-42281496 | None:intergenic | 60.0% | |
| GAGAACGCGACCAGCATTCC+AGG | - | chr6.4:42282459-42282478 | None:intergenic | 60.0% | |
| TGCTGGTCGCGTTCTCACTC+AGG | + | chr6.4:42282463-42282482 | MS.gene30515:CDS | 60.0% | |
| ! | CCACGAAACCGGCTGGTTCT+CGG | - | chr6.4:42283490-42283509 | None:intergenic | 60.0% |
| ! | CCAGCCGAACACCGGTTACT+AGG | + | chr6.4:42281474-42281493 | MS.gene30515:intron | 60.0% |
| ! | GTCAACGGTTGGTCGTCGTG+GGG | - | chr6.4:42279980-42279999 | None:intergenic | 60.0% |
| CCTACCTCCCAGCCGAACAC+CGG | + | chr6.4:42281466-42281485 | MS.gene30515:intron | 65.0% | |
| GTAACCGGTGTTCGGCTGGG+AGG | - | chr6.4:42281473-42281492 | None:intergenic | 65.0% | |
| ! | CCGAGAACCAGCCGGTTTCG+TGG | + | chr6.4:42283487-42283506 | MS.gene30515:intron | 65.0% |
| CCGGTGTTCGGCTGGGAGGT+AGG | - | chr6.4:42281469-42281488 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 42279718 | 42283899 | 42279718 | ID=MS.gene30515 |
| chr6.4 | mRNA | 42279718 | 42283899 | 42279718 | ID=MS.gene30515.t1;Parent=MS.gene30515 |
| chr6.4 | exon | 42279718 | 42279826 | 42279718 | ID=MS.gene30515.t1.exon1;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42279718 | 42279826 | 42279718 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42279959 | 42280110 | 42279959 | ID=MS.gene30515.t1.exon2;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42279959 | 42280110 | 42279959 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42280218 | 42280400 | 42280218 | ID=MS.gene30515.t1.exon3;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42280218 | 42280400 | 42280218 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42280639 | 42280673 | 42280639 | ID=MS.gene30515.t1.exon4;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42280639 | 42280673 | 42280639 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42281085 | 42281241 | 42281085 | ID=MS.gene30515.t1.exon5;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42281085 | 42281241 | 42281085 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42281767 | 42281820 | 42281767 | ID=MS.gene30515.t1.exon6;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42281767 | 42281820 | 42281767 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42282160 | 42282252 | 42282160 | ID=MS.gene30515.t1.exon7;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42282160 | 42282252 | 42282160 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42282342 | 42282484 | 42282342 | ID=MS.gene30515.t1.exon8;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42282342 | 42282484 | 42282342 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42283069 | 42283139 | 42283069 | ID=MS.gene30515.t1.exon9;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42283069 | 42283139 | 42283069 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42283254 | 42283337 | 42283254 | ID=MS.gene30515.t1.exon10;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42283254 | 42283337 | 42283254 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| chr6.4 | exon | 42283778 | 42283899 | 42283778 | ID=MS.gene30515.t1.exon11;Parent=MS.gene30515.t1 |
| chr6.4 | CDS | 42283778 | 42283899 | 42283778 | ID=cds.MS.gene30515.t1;Parent=MS.gene30515.t1 |
| Gene Sequence |
| Protein sequence |
