AlfalfaGEDB | MS.gene052616

M. sativa cultivar XinJiangDaYe / MS.gene052616

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00515.31 PF13181.9 PF13414.9 PF13424.9 PF14559.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052616.t1	XP_013460958.1	96.9	652	14	2	1	646	1	652	0.00E+00	1147.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052616.t1	G8A2H1	96.9	652	14	2	1	646	1	652	0.0e+00	1147.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051279	MS.gene052616	0.81698	4.18E-52	-1.69E-46
MS.gene052582	MS.gene052616	0.801291	9.65E-49	-1.69E-46
MS.gene052616	MS.gene060919	0.801453	8.94E-49	-1.69E-46
MS.gene052616	MS.gene064422	0.804001	2.66E-49	-1.69E-46
MS.gene052616	MS.gene065667	0.801047	1.08E-48	-1.69E-46
MS.gene052616	MS.gene066335	0.814484	1.51E-51	-1.69E-46
MS.gene052616	MS.gene067826	0.800984	1.12E-48	-1.69E-46
MS.gene052616	MS.gene28652	0.802891	4.52E-49	-1.69E-46
MS.gene052616	MS.gene30515	0.804584	2.01E-49	-1.69E-46
MS.gene052616	MS.gene30930	0.8033	3.72E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene052616.t1	MTR_3g075240	96.933	652	14	2	1	646	1	652	1276
MS.gene052616.t1	MTR_3g075240	96.053	532	15	2	1	526	1	532	1036
MS.gene052616.t1	MTR_3g075240	95.833	384	10	2	1	378	1	384	744

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052616.t1	AT5G63200	65.127	628	212	3	18	644	24	645	0.0	788
MS.gene052616.t1	AT5G63200	63.217	628	208	4	18	644	24	629	0.0	748

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Find 149 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGACTGTGAAGGCCAAGT+TGG	0.570167	3.1:+61915243	None:intergenic
AACCTTAATCAAGTTAGACT+TGG	0.563544	3.1:+61914661	None:intergenic
AACGCAATCGGATATCAGGC+AGG	0.576139	3.1:-61917174	MS.gene052616:CDS
AAGAGATGGTGATTCATCCC+TGG	0.585366	3.1:-61915623	MS.gene052616:CDS
AAGATTAAACCAACCTCAAA+AGG	0.456393	3.1:-61917540	MS.gene052616:intron
AAGATTATCATACCTGTGCA+TGG	0.619115	3.1:+61917351	None:intergenic
AAGCTATCCCAAGATTACCA+AGG	0.702190	3.1:+61916909	None:intergenic
AAGCTATTGGAAGCTCAACC+AGG	0.494761	3.1:+61915605	None:intergenic
AAGCTGAAGAAGTATACAAA+CGG	0.516822	3.1:-61914925	MS.gene052616:CDS
AAGGTGCATGTACCTGCACA+CGG	0.677017	3.1:+61917108	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACCTTGGTTATAGCATAA+CGG	-	chr3.1:61915271-61915290	MS.gene052616:CDS	30.0%
AAAGGGTTATTCACTTCATA+TGG	-	chr3.1:61918893-61918912	MS.gene052616:intron	30.0%
AACCAAGTCAAACATTGTAA+TGG	-	chr3.1:61915495-61915514	MS.gene052616:CDS	30.0%
AACCTTAATCAAGTTAGACT+TGG	+	chr3.1:61919235-61919254	None:intergenic	30.0%
AAGATTAAACCAACCTCAAA+AGG	-	chr3.1:61916353-61916372	MS.gene052616:intron	30.0%
AAGGGTTATTCACTTCATAT+GGG	-	chr3.1:61918894-61918913	MS.gene052616:intron	30.0%
ACATGCTATACTATCCAATA+TGG	-	chr3.1:61919020-61919039	MS.gene052616:intron	30.0%
AGCAATAAATTACCTGCTTT+AGG	+	chr3.1:61918417-61918436	None:intergenic	30.0%
ATCCATTACAATGTTTGACT+TGG	+	chr3.1:61915500-61915519	None:intergenic	30.0%
ATGTTGTCAAATATCAGCTA+TGG	-	chr3.1:61915341-61915360	MS.gene052616:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	61914607	61919308	61914607	ID=MS.gene052616
chr3.1	mRNA	61914607	61919308	61914607	ID=MS.gene052616.t1;Parent=MS.gene052616
chr3.1	exon	61919148	61919308	61919148	ID=MS.gene052616.t1.exon1;Parent=MS.gene052616.t1
chr3.1	CDS	61919148	61919308	61919148	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61917887	61918103	61917887	ID=MS.gene052616.t1.exon2;Parent=MS.gene052616.t1
chr3.1	CDS	61917887	61918103	61917887	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61917541	61917633	61917541	ID=MS.gene052616.t1.exon3;Parent=MS.gene052616.t1
chr3.1	CDS	61917541	61917633	61917541	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61917364	61917465	61917364	ID=MS.gene052616.t1.exon4;Parent=MS.gene052616.t1
chr3.1	CDS	61917364	61917465	61917364	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61917121	61917288	61917121	ID=MS.gene052616.t1.exon5;Parent=MS.gene052616.t1
chr3.1	CDS	61917121	61917288	61917121	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61916899	61916987	61916899	ID=MS.gene052616.t1.exon6;Parent=MS.gene052616.t1
chr3.1	CDS	61916899	61916987	61916899	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61916402	61916523	61916402	ID=MS.gene052616.t1.exon7;Parent=MS.gene052616.t1
chr3.1	CDS	61916402	61916523	61916402	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61916094	61916275	61916094	ID=MS.gene052616.t1.exon8;Parent=MS.gene052616.t1
chr3.1	CDS	61916094	61916275	61916094	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61915492	61915776	61915492	ID=MS.gene052616.t1.exon9;Parent=MS.gene052616.t1
chr3.1	CDS	61915492	61915776	61915492	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61915156	61915303	61915156	ID=MS.gene052616.t1.exon10;Parent=MS.gene052616.t1
chr3.1	CDS	61915156	61915303	61915156	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1
chr3.1	exon	61914607	61914980	61914607	ID=MS.gene052616.t1.exon11;Parent=MS.gene052616.t1
chr3.1	CDS	61914607	61914980	61914607	ID=cds.MS.gene052616.t1;Parent=MS.gene052616.t1

Gene Sequence

>MS.gene052616

ATGGCTGAGAAGTTGGGTTCAGAAGAGAGGTCAGCAGGGATGAAGAGGAAACAATTCGCTGTTTTGGCTGACCTCAACATCGATCCCCCTGAAGCCGATGACGACGAAGACGACAATAATCATTCTTCTTCACTTCTTCCACCACATACTGAAATCACCAGGTATCTTTTTCTTTTTATTTATTTATTTACTTCTGATTAATTAGAACTGAAACAATGAATTCGACTTCATTTATAAACTAGAGCTTGTGCAAATACATTGTGCTCAGAAATATGAATGAACTAGGCAAGCCTGAAGTAACTCATAATTAACTAACAGAATTACTGGCTTACTATCTATGAATATGATGCACCGAACTCGATACCGACACGTAGACTTTCGTAATAATTTGAGAAAATGGAAGTGATTAAGGACCCGTTTGTTTTGGATTTTTTTGGTAAATCACATTTTAGAAGAAATAAATTCATTATAAAATTGTGCAAAGAGTTACAGTTATGAATTATGAAAAAACGAGAAATCAAGTTATATTATATATGCACAAATAATTTAAAAAAGATTTGCACAATGGCATGATTAATTCACATCGTGACGATTGCAATCTATAACTTATCATCCGTAATAGCATAAATCACGAATTCCTTAATGCGACCTCGATCGTTATTTAAAACCTTGGTTATAGCATAACGGAATTTGGGCAAATTGTTTTTGTTCTGCGATACGTTGTTTAATACAAAATGTTGTCAAATATCAGCTATGGCGAAGCTTTAGCACTACTGCGTAGTGAAGTTTTAACAATCTTCTATTTTCCACTATCCACAATTGACAACACTGTGTAACGAGCATTTGGGTCTATAATTTTGTAATTTCATTGAAGATATTGGACCTCGCAACCAAGTCAAACATTGTAATGGATTTCAAGTGATATATTTTTCGGAAAGTTATGAAAGAGAAACGGCCGACAAGCTTGTAGTTGTAAAACAGAATCGTTCCTTTGTAAATGTGCTATAGTATATCATTGTATTTCATTTTGTAAATGTGAATGTAACATTTATGCATGTTATTGATTATTGTCCATTCAATTGACAGCAGGTTTTCTTAAAAAAAATCTTTAGTTATTGCAATAAGAATCGTTTGCATTAATTCTGAATATCTTTTTGTTGGTTTTTGTCATTTATTGATTTATTAATTTTTGAATTAACATATAGGTTGATAAATGACGAAAACAGTCAAGATAAGAGTTTGTTGTCCAAAGACACCAATAGCAACGAAGCTGAAGGTAAATTGTTGAACAAATTGGGGAAATGCCGTTCCAAACCTAGCAAGACGGATTCTTCTATTGACTGTGGAGCTGATGCGGATGGTGATCCACATGTTCAAGGGGCTCCTTCAGCAAGGGAAGAAAAAGTTAGCAGCATGAAGACTGTGAGTTTAATTTGGAATCATCAAATATATTTTTCTTTGATTTAAATCATCCCACTTTTAAACTCTATTAATCAATCAGTCTAATGTGCCTAAGGATTCCAGATAGTCAGATAGCTATCTTTAATAATTCCTACCTAAAACTAGTTAGTCAGTTAGCAAGACGTAATCTTGACATAGTAGTAATTTATTTTTATGAATATTGCCAGTGTTGTTGTTTTTGGTTAGTCAATGACAAAACTAGGTATAATTGTAGGGATTGGTTCATGTTGCGAGGAAGATGCCCAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGTACCAAAGATTAAACCAACCTCAAAAGGTAGTTCTTCCAAATTTACCTGTTACGGTTCCTAGTCTACATACAGGTTACTCATTAGGTCATTAACTTTTTCAGGCTATATTGGCTTATGAGAAGGCAGAAGAGATATTACTCAGGCCAGAGGTTGAGATTGATAGGGCAGAGTTCCTTTCTTTAGTTCAGATTCACCATGCACAGGTATGATAATCTTAATTTGATAGATTATTTATTTTAGTCTTTCTGTTCATTGACATGTTCTTATAATCCTTATAGTGCCTGATAATAGAAAGTTCATCAGAAAATAGTTCAGACAAAGAACTTGAACCTCACGAACTTGAGGAAATTCTTTCTAAACTGAAAGAATCAACGCAATCGGATATCAGGCAGGCAGCTGTATGGAATACACTGGGTTTTATCCTTCTTAAAACTGGCCGTGTGCAGGTACATGCACCTTGTTTTCTCTTTTCCACACACTTGAAAGCTCTCACAGCATGTATGACGTTTTAGTAATTGACGTAACAACATTTTTTTCTTCCATTTCCTGAACCAATGTAAACTTCAAACCCTGGTGTAGAGTGCCATCTCAGTTTTGTCATCCTTGTTAGCCATTGCACCAGAGAACTATGATTGCCTTGGTAATCTTGGGATAGCTTACCTTCAAATGTAAGTTCAAATGGTAATTACCTCTTTTATATATAAAATAAGTAAAATGATATACTTGGGATGTTTTGTATTTTATTTAACTCTTCACGTTAAGTTGTACCCTTTAGTTTGTAACATATGCAAGATTCATTCCCATGTGACATGTGGTGATAATGTCTTTTCATTTTTAGCGAAAAGTTTATCTTCAGTACACCCGCAATGCACCATACAGCAGATCCTGTTCTAAGAAATATTCAAACCTTTTTTCTGTGTAATACTATTGCGTTGAATTGTTTGAGAAATACCGATATTTTTGTGGTTTTAATTGAAAAGAGTTTATGAGATTTTATTCCATATGTCTTTCCTCAGTACTGTTACTAACTAAATTGCCTTCAGTGGAGATTTGGAATTATCTGCGAAGTGTTTCCAAGAGTTGATCCTAAAAGATCAAAACCATCCTGCAGCTTTGGTCAATTATGCTGCTCTCCTTTTGTGTAAAAATGCTTCAGTTGTAGCAGGTACTATACTGATATCTATGCTCTCATAATTTATTACCTTGATTTGTCCTTTAATATGATTATGTAGCGATTGAAGAAAATTTTGTAATATGGTTTTCATTTTGTCATATGGATTTTTAATTCCAGGTGCTGGTGCAAATGCTGCTGATGGTGCTTCAGCAGAACAATCCATGGCTGCTAATGTTGCTAAGGAATGTTTGTTAGCTGCAGTTAAAGCAGATGGAAAATCAGCCCATATTTGGGCAAATCTTGCCTATGCATTTGCTATTACTGGGAATCATCGAATTTCCAGCAAGTGCTTGGAAAAGGTGCTCATGGCCCCTTGCTACAATCATTTATAGTGTATTTATTGAGGTTGTTCATTGGTTTCCTGGTCCTTGTTGGTGGAAATGTTTTGACATTTGATTCTCTTGAAACAAATTCAAGCAGATCATTTTTTTTTGGCATTTTTTTCCATGATTAAAGATAGCTGGAGTTACTCATTGATTTTACATGTATTACATTTTGGCTAGTGTTAGCGTCACTTATAGTTTCTCCCTTGTTTTTATTAACCCATCTTCTGAGGATGTTTTGGCCAATGTAGATTGTGATTTAGTGTTTCATTTTTCCTTCCCTTTGTTGCCAGGCAGCAAAACTGGAACCTAATTGCATGTCTGCTCGATATGCCGTTGCTAGCCATCGAATAAAGGAGGCAGAAAGATCTCAAGATCCTAGTGAATTGCTTTCGTCTGCTGGAAATGAGATGGCTTCCATAATAAGAGATGGTGATTCATCCCTGGTTGAGCTTCCAATAGCTTGGGCCGGGCTTGCAATGGTCCACAAGGCTCAGCATGAGATATCAGCAGCATACGAAAGTGAACAGGACGGGCTGAAGGAAATTGAAGAACGTGCTGTTTCCAGCCTAAAGCAGGTAATTTATTGCTTTCTTATAGGTATGTCCCCAGGTTGAGGTGCAGATGGAAAATTTCTATGCCTTATCCTAAGTATACACTTGCTAATTTACGCACTTATGCAGCTTGTCTGATGTTAAATGTTTGGTGTCTCTGTTGGATTTATTATCTCACATAGTTGTTTGGTGTATCATTCTTTTTCTACTAGGCCATAGCGGAAGATCCAGATGATGCAGTTCAGTGGCACCAACTTGGCCTTCACAGTCTTTGTGCCAGGGAATTCAAAACATCACAAAAATACCTCAAAGCTGCTGTTGCCTGTGACAAGGGTTGCAGCTATGCATGGTCTAACCTCGGTATGTGCTTCTTTTCTCTCTTGGCTGTAATGGGAATATCTATCTTCTCAAGTACGATATTCTATGCCTTTGATTGTCAAGTGCCAACTTTAGTCCGGCATTTTGACTCCCTCTTCCATGTCTTTTTCCCGTAAAAGGGTTATTCACTTCATATGGGTTAAAAATGTATGAATAGGTGTCTCACTTCAACTATCAGAAGAACAATCACAAGCTGAAGAAGTATACAAACGGGCTTTGTCTTTGGCAACGAAACAAGAAGCACATGCTATACTATCCAATATGGGAATTCTCTATCGCCAGCAGAAAAAATATGAACTTGCAAAGGCCATGTTTACAAAGTCACTTGAACTTCAGCCTGGATATGCTCCTGCATTCAACAATCTGGGTCTTGTTTTTATTGCAGAGGGTCTGTTAGAAGAGGCCAAGTATTGTTTTGAGAAAGCACTCCAATCAGATTCAATGCTGGATGCAGCCAAGTCTAACTTGATTAAGGTTGCCACAATGTCGAAGATATGCAAAGACCTTTCCTCATGCACTCTTAAAGAATGA

Protein sequence

>MS.gene052616.t1

MAEKLGSEERSAGMKRKQFAVLADLNIDPPEADDDEDDNNHSSSLLPPHTEITRLINDENSQDKSLLSKDTNSNEAEGKLLNKLGKCRSKPSKTDSSIDCGADADGDPHVQGAPSAREEKVSSMKTGLVHVARKMPKNAHAHFILGLMYQRLNQPQKAILAYEKAEEILLRPEVEIDRAEFLSLVQIHHAQCLIIESSSENSSDKELEPHELEEILSKLKESTQSDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLAIAPENYDCLGNLGIAYLQIGDLELSAKCFQELILKDQNHPAALVNYAALLLCKNASVVAGAGANAADGASAEQSMAANVAKECLLAAVKADGKSAHIWANLAYAFAITGNHRISSKCLEKAAKLEPNCMSARYAVASHRIKEAERSQDPSELLSSAGNEMASIIRDGDSSLVELPIAWAGLAMVHKAQHEISAAYESEQDGLKEIEERAVSSLKQAIAEDPDDAVQWHQLGLHSLCAREFKTSQKYLKAAVACDKGCSYAWSNLGVSLQLSEEQSQAEEVYKRALSLATKQEAHAILSNMGILYRQQKKYELAKAMFTKSLELQPGYAPAFNNLGLVFIAEGLLEEAKYCFEKALQSDSMLDAAKSNLIKVATMSKICKDLSSCTLKE