AlfalfaGEDB | MS.gene31072

M. sativa cultivar XinJiangDaYe / MS.gene31072

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31072.t1	XP_003597464.1	98.8	482	6	0	1	482	1	482	2.00E-268	934.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31072.t1	G7IUF0	98.8	482	6	0	1	482	1	482	1.4e-268	934.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049182	MS.gene31072	0.804234	2.38E-49	-1.69E-46
MS.gene050379	MS.gene31072	0.813318	2.72E-51	-1.69E-46
MS.gene051959	MS.gene31072	0.809231	2.10E-50	-1.69E-46
MS.gene051960	MS.gene31072	0.80808	3.69E-50	-1.69E-46
MS.gene052040	MS.gene31072	0.960147	3.14E-118	-1.69E-46
MS.gene054957	MS.gene31072	0.80359	3.24E-49	-1.69E-46
MS.gene05624	MS.gene31072	0.807015	6.21E-50	-1.69E-46
MS.gene057148	MS.gene31072	-0.819519	1.11E-52	-1.69E-46
MS.gene05878	MS.gene31072	0.812227	4.71E-51	-1.69E-46
MS.gene05952	MS.gene31072	0.823374	1.43E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31072.t1	MTR_2g098340	98.755	482	6	0	1	482	1	482	0.0	979
MS.gene31072.t1	MTR_4g065980	74.390	492	113	7	1	482	1	489	0.0	730
MS.gene31072.t1	MTR_3g104820	30.563	373	225	11	32	398	19	363	9.66e-41	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31072.t1	AT4G12070	61.829	503	143	11	3	479	1	480	0.0	597

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Find 104 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCGACAACATAATTC+GGG	0.468163	2.4:+5633156	None:intergenic
AAAGAAGAAGATTCAAAACT+TGG	0.442147	2.4:-5630021	MS.gene31072:CDS
AACAGACACTTGTAGATTAT+TGG	0.210823	2.4:-5629721	MS.gene31072:CDS
AACATAATTCGGGTCATCAA+TGG	0.466943	2.4:+5633166	None:intergenic
AACTCTGGTGTGTCTGTGCA+AGG	0.563105	2.4:+5629599	None:intergenic
AACTGAGTCCCTACTCACTA+AGG	0.531054	2.4:-5630436	MS.gene31072:intron
AAGAGGCTCTGATGAATTGG+CGG	0.559023	2.4:-5633249	MS.gene31072:CDS
AAGCTCTTCGACTATGTCAC+CGG	0.557060	2.4:+5633400	None:intergenic
AATGTACCTGCTACACGTTC+AGG	0.296544	2.4:-5629768	MS.gene31072:CDS
ACAAGGACAAAACTACAAGA+TGG	0.571738	2.4:-5630666	MS.gene31072:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACCCGACAACATAATT+CGG	+	chr2.4:5629689-5629708	None:intergenic	30.0%
AAACAAACAAGTACCTGTTA+AGG	+	chr2.4:5630202-5630221	None:intergenic	30.0%
AAAGTCAAAACGCAAAAGAA+AGG	+	chr2.4:5629770-5629789	None:intergenic	30.0%
AACAAAGTGACATAAATTGC+TGG	+	chr2.4:5631366-5631385	None:intergenic	30.0%
AACAACTCACATGATAAGAT+AGG	+	chr2.4:5631274-5631293	None:intergenic	30.0%
AACAGACACTTGTAGATTAT+TGG	-	chr2.4:5633120-5633139	MS.gene31072:CDS	30.0%
AACCACTTAAGTTACATGTT+TGG	+	chr2.4:5632519-5632538	None:intergenic	30.0%
AAGTCTTCAATCAGAAATGT+CGG	+	chr2.4:5631931-5631950	None:intergenic	30.0%
AAGTTGCAAACTATGTAATC+GGG	-	chr2.4:5630247-5630266	MS.gene31072:intron	30.0%
ACAACTCACATGATAAGATA+GGG	+	chr2.4:5631273-5631292	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	5629317	5633546	5629317	ID=MS.gene31072
chr2.4	mRNA	5629317	5633546	5629317	ID=MS.gene31072.t1;Parent=MS.gene31072
chr2.4	exon	5633120	5633546	5633120	ID=MS.gene31072.t1.exon1;Parent=MS.gene31072.t1
chr2.4	CDS	5633120	5633546	5633120	ID=cds.MS.gene31072.t1;Parent=MS.gene31072.t1
chr2.4	exon	5630437	5630720	5630437	ID=MS.gene31072.t1.exon2;Parent=MS.gene31072.t1
chr2.4	CDS	5630437	5630720	5630437	ID=cds.MS.gene31072.t1;Parent=MS.gene31072.t1
chr2.4	exon	5629996	5630223	5629996	ID=MS.gene31072.t1.exon3;Parent=MS.gene31072.t1
chr2.4	CDS	5629996	5630223	5629996	ID=cds.MS.gene31072.t1;Parent=MS.gene31072.t1
chr2.4	exon	5629317	5629826	5629317	ID=MS.gene31072.t1.exon4;Parent=MS.gene31072.t1
chr2.4	CDS	5629317	5629826	5629317	ID=cds.MS.gene31072.t1;Parent=MS.gene31072.t1

Gene Sequence

>MS.gene31072

ATGATCATGGACAGAACATCACAAACAAGTTCAGACTCACCAACCAGAGACCCAAAAGTTTTATCAATCGAATGTCTACGAGGAAGTTCCAAAGCAGATGAATGGACAGTAGACATGCTTCAAACCGGTGACATAGTCGAAGAGCTTCGAATCGGAACAAAAACAAAATCACAGATCCGATATAATTCACCGTTCAAAGGTGGTAGAAGTGGAGTTCAGAAAATTCTTCAAGAAGCGTATAAGAAGAAGGAAACTTCGATAATGATTCGAGTTCGAAGAGGCTCTGATGAATTGGCGGAGTTACAAGCTTGTATTGTTCCGAATGATGCGTCGGGGAAGAAACAGTTTGTTCTGAGATCCATTGATGACCCGAATTATGTTGTCGGGTTTTTGGATCGAACTGAAGTTGAATGCTTTGAGATTCAAGGTACTTTACACCTACCTCAACTTCCTTTCTTTTGCGTTTTGACTTTTTATTTTGTGTTGTTTGTTTATCCTCCAATTACGACCAAGTTCTGTTCCAGTAATTCAAAGTTCGATTAAGAGGATAAATAAAACTCGACCTAAAATTTTTCGATTCAGATATTGAATTATTCTAGTATTTTTAAAGGATTCGTCTTTAACGAGACTCCATTGTTTATAGAACTCTAATTTTTAAAAGGTTTTTTCTCCGGTTTTGAGCAAGATGGGGCGGATGCATAATTTCTCATCCGTCTTTAGATAAAATTCATTAACTATTTGAGCTAAATCAATTAGTTAGTTTGGTTTGTGTGTTTTTTTAGTTTTTGTTTCTAAAAATGTTTGAGTACGTGTGAGAACGTTGCTTCCCGCTACATTTTTATTTCCTTTCTCACGTGATTTACTTCACACGTGTGGCAATAACCTTAACAGGTACTTGTTTGTTTCAACTTTTAAGGTTACAAAGCTTGCAAGTTGCAAACTATGTAATCGGGAAGGAATTTATTTTTTTGACTTGGGGTGTAAGTTGGTTAGAAAACGAGAATAATTTTTACAGTTGAGGGAGTTTGAAAGTCAACAAAATCAGCTGAAATGTACATGTTTTTAGGACAAATATTTTGGAACATATGTAGCCGCTGCATTTGTTTGATTTCTATGACTGACGGCAATTTTGTTTTGTTTTGTTTTGTTTTGTTTATGTATGTACTCAATTAAATCATATTATAGTGTCCTTTTTTAAGTTAGTTCTTGAAATATATCTACAAAATGTAATTTAATTAGATGCAGGTGTAAAAATTTACACGGTCAGTGTATAAAAATTAGGCTTACTTGCACTTTTGCCCCCTATATTTTGCCAATTGTGCGATTTTGCACCCCATTGTTTCAAACGAGCGATTTTGCACCCTATATTTTGCCAATTGTGCGATTTTGCACCCCATTGTTTCAAACGAGCGATTTTGCACCCCATAGTTTTTTTGGGGTGCAAAATCAGAAAGGGGGAAAACTACGGGGTATAAAATCGCTCGTTTGAAACAATAGGGTGCAAAATCGCACAATTGGCAAAATAGAGGGTGCAAAATCGCTCGTTTGAAACAATGGGGTGCAAAATCGCACAATTGGCAAAATATAGGGGGCAAAAGTGCAATTAAACCTAAAAATTAAAGCATTTGTTAAAAGTTAAAATGTGATAGATTCATTAGATTTACATCATGTCAATTTGGATACATTAGGTTCCGTTTATATTTTTCTTAAAAAATATTTATCATTCACTATTACTAGATTTTTTCCAATAACTTTTTTTTCCAATAACTTTTTATAATGTCATTTACTAATTAAAAAATTGTTTAATTATAATATGTTTAGATTTAGAAAATTTAACAGTAGAGAAAATTCCAATTTTTTTAAAAATTAGACTATAAATATAGGACTCCAATCATAATTAGGGAAAATAAGTAACATAAAGTGAATTTTATTTTAACCTTTTCTTTTATTAAACCCTATCTTATCATGTGAGTTGTTCTTAGCATAAATTTCTTCCTACTCCATATAGAAATGAAATTCATCTCTTTCTCAGCTCTAACGCTGTTGCCAGCAATTTATGTCACTTTGTTTGAACTGGTTGGCTTTGTTGAATGTTGACAATAGGCCACACCTTTTGTTTGAGGCAAAAACATTTCATGTGAGAGATGCAAACTTTGTTATCTTCATGCACGCTGTTGTGTGTTCTGCATGAAACTTGTGATGTCACATGGGTCCTTGCTGCACATGAATGATGTAGACAGTTTGTTTCACCCACTTTTTATTACATCCCCACTTTGCTATAGATATATAGATGTTATAGATAAATGTTCGGTATAATTGGTGATTTATTAGATTCGGTTTGATATTGATCAGGTAGTTACTAGTTAATTATAATTAGTTGTTGGTTGATTATATAGTGATTATAAGGTAATTAATTGTTGGAACACTAGTTGAATGTGAGTGAAAGTTAGAAGAGTAAACACATGTCCCATTAGCTAGAACTTGTGTTGGTGTGAATTGTAAAAATGTCTCACATAGGAAAGAACACACCCACGCAAAAGGAAAGAAGAAAGATTTGTCGTGGATTAAGAATTTCAATTGATTGTAAGGTTATACCAACTTCTCTGTAGCACCGACATTTCTGATTGAAGACTTGTAAGGTTATAACACATGTTATTACATTCAATTAATTCATTTTATTAAATTATTATTGGTGTTGACGTGTCAGTGTTGTGTATGGTTTCCGTGTCTGTGTTAGTGCTTCATAAGACAAGAACATTAATGCATCTTTGCTTTCTTACTTTCTCACATTGCATCTAATTAGTAAGCAATAACCACAATTTTCAGCTTCAAGAAGCAGTAGAATGGTAAATGCACTAACAAGGACAAAACTACAAGATGGATATGTTTCTTATCCATGGGAGAGAAGGATGCAAGAGATGCTAACAGTTCCAAATTCAAGTAACTTTCTTTCCATATTGCTCCTCCCCAAAGCTTCAGATAGAGTAGCATCTCGCTACAATGATCTAGAAGATACCCTAGCAAGAGCAAATGCATGGATTAATGCAGGTCAAGCTTCTGGGGTTCCTATTGTCTTCATGAACATCCAAACTGAGTCCCTACTCACTAAGGTAAATGATCACACAAAAAAAGACTTAGTAGGTTAACTTAATCAACTAAGCTTGGGAGAATCGAAAACTCATTTTTGGATTTTGAGTCTCCAAACATGTAACTTAAGTGGTTGAGCTGAGACATTCGAAGAAGTTTGAGAAGGAAGTTTAGGATTGGAATTCTAACCTCTAACATGACATACTAACACATGGATTTTTCCGTTTGTGTGACAGATATCTGGAGAGACAGCTTCTGCTACTGTGAATGCAGGTTCTCTGTCTGACTTATCTAACCTAGCAAATGCAAGCCTTTATGGTTTTGAGGATTACCATGGAATAGACATAGGTGTTGTTCGAGCAGTTCGTTTATGGTATGCTCCAGTTGGAGGAGAGCTTTCTATTGAGATCAAACTAAAAGAAGAAGATTCAAAACTTGGATTCGCCATTAGTCGTACTGAAGAGGTCTCTCTCTCACCATCTCTTCTCTTGTCGATTATCATTTGTCTTATGTTGCAGAGACATAAGAAAATCTTTGCTATATATATACATACATATTTACTATAATACATATAGTTAAAGAGGTTCTTATATTGAATAAAATTTTAGCTGATAATTTTATTGTAATATACAGGGATTTATTTTCATATCATCAGTGATTAATCAAGAAAATGTACCTGCTACACGTTCAGGGCTAAGCAGTCTTTATAAACTAGCAACAGACACTTGTAGATTATTGGTAGTGTCAAGAGTGTCAAACCAAAAAGTACTTCCATGGATGGTATCTTCAACAGGAGCAATTCGATGTTACGACACAGTTTCCTTGAGCCAGAAGCTATCCTTGCACAGACACACCAGAGTTCCAATTCTCCTCCATGTCTTCCTTTGGGACCGATTGTTGGTTAATTCAAGCGGTGGGAGCAATAGATTCAGAGCTCTATCTCCTTCTGTGCTGCAGCCATTGCCATCTGAAGTTCAAATTGGCCGGTTTTCAAATGAAACTCATACGCTCCCATTGCCACCAGAAGCTTCTGATCCAACCGATATCACTAGCGAGGTTTCACAATCGAGGCTTGAGAGAGATACAGCTGGTGAAGCCTCATTCAGATTTCATGATTTCTCTCTCTCTAGCAACTGGGTATGA

Protein sequence

>MS.gene31072.t1

MIMDRTSQTSSDSPTRDPKVLSIECLRGSSKADEWTVDMLQTGDIVEELRIGTKTKSQIRYNSPFKGGRSGVQKILQEAYKKKETSIMIRVRRGSDELAELQACIVPNDASGKKQFVLRSIDDPNYVVGFLDRTEVECFEIQASRSSRMVNALTRTKLQDGYVSYPWERRMQEMLTVPNSSNFLSILLLPKASDRVASRYNDLEDTLARANAWINAGQASGVPIVFMNIQTESLLTKISGETASATVNAGSLSDLSNLANASLYGFEDYHGIDIGVVRAVRLWYAPVGGELSIEIKLKEEDSKLGFAISRTEEGFIFISSVINQENVPATRSGLSSLYKLATDTCRLLVVSRVSNQKVLPWMVSSTGAIRCYDTVSLSQKLSLHRHTRVPILLHVFLWDRLLVNSSGGSNRFRALSPSVLQPLPSEVQIGRFSNETHTLPLPPEASDPTDITSEVSQSRLERDTAGEASFRFHDFSLSSNWV