Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31439.t1 | XP_013465141.1 | 98.6 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 3.60E-69 | 270.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31439.t1 | O49453 | 69.3 | 137 | 40 | 1 | 3 | 137 | 13 | 149 | 6.2e-46 | 184.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31439.t1 | I3SMP7 | 98.6 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 2.6e-69 | 270.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050277 | MS.gene31439 | 0.803009 | 4.28E-49 | -1.69E-46 |
| MS.gene050303 | MS.gene31439 | 0.81141 | 7.10E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene31439 | 0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene052302 | MS.gene31439 | 0.817832 | 2.69E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene31439 | 0.827147 | 1.84E-54 | -1.69E-46 |
| MS.gene052947 | MS.gene31439 | 0.821892 | 3.17E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene31439 | 0.821818 | 3.30E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene31439 | 0.805368 | 1.38E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene31439 | 0.820171 | 7.90E-53 | -1.69E-46 |
| MS.gene056760 | MS.gene31439 | 0.802729 | 4.89E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene31439 | 0.806368 | 8.51E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene31439 | 0.803912 | 2.78E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene31439 | 0.801989 | 6.94E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene31439 | 0.837237 | 5.85E-57 | -1.69E-46 |
| MS.gene060429 | MS.gene31439 | 0.848691 | 5.21E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31439.t1 | MTR_2g090635 | 98.571 | 140 | 2 | 0 | 1 | 140 | 1 | 140 | 1.66e-100 | 284 |
| MS.gene31439.t1 | MTR_2g014360 | 67.361 | 144 | 39 | 2 | 2 | 140 | 12 | 152 | 1.69e-65 | 196 |
| MS.gene31439.t1 | MTR_8g064590 | 69.697 | 132 | 36 | 1 | 8 | 139 | 9 | 136 | 3.41e-62 | 187 |
| MS.gene31439.t1 | MTR_5g034290 | 66.176 | 136 | 42 | 2 | 3 | 138 | 4 | 135 | 1.05e-58 | 178 |
| MS.gene31439.t1 | MTR_5g034290 | 66.176 | 136 | 42 | 2 | 3 | 138 | 37 | 168 | 2.69e-58 | 178 |
| MS.gene31439.t1 | MTR_6g060020 | 68.675 | 83 | 26 | 0 | 57 | 139 | 17 | 99 | 7.76e-38 | 124 |
| MS.gene31439.t1 | MTR_2g090640 | 61.728 | 81 | 27 | 1 | 57 | 133 | 456 | 536 | 4.90e-23 | 94.0 |
| MS.gene31439.t1 | MTR_5g083900 | 41.085 | 129 | 63 | 3 | 10 | 137 | 111 | 227 | 4.66e-22 | 87.8 |
| MS.gene31439.t1 | MTR_5g083870 | 43.609 | 133 | 58 | 6 | 10 | 137 | 5 | 125 | 1.24e-21 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31439.t1 | AT2G33845 | 72.464 | 138 | 35 | 1 | 3 | 140 | 48 | 182 | 1.13e-69 | 207 |
| MS.gene31439.t1 | AT4G28440 | 69.630 | 135 | 39 | 1 | 5 | 137 | 15 | 149 | 1.88e-63 | 191 |
| MS.gene31439.t1 | AT1G23750 | 60.870 | 138 | 50 | 1 | 2 | 139 | 4 | 137 | 5.89e-60 | 181 |
| MS.gene31439.t1 | AT1G03810 | 68.217 | 129 | 40 | 1 | 7 | 135 | 14 | 141 | 1.59e-59 | 181 |
| MS.gene31439.t1 | AT1G10590 | 65.926 | 135 | 41 | 3 | 5 | 137 | 6 | 137 | 8.68e-58 | 176 |
| MS.gene31439.t1 | AT1G10590 | 65.926 | 135 | 41 | 3 | 5 | 137 | 6 | 137 | 8.68e-58 | 176 |
| MS.gene31439.t1 | AT1G10590 | 65.926 | 135 | 41 | 3 | 5 | 137 | 20 | 151 | 1.80e-57 | 176 |
| MS.gene31439.t1 | AT1G23750 | 69.474 | 95 | 29 | 0 | 45 | 139 | 6 | 100 | 5.46e-47 | 147 |
Find 37 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCTAACTTCAAAATTTGC+AGG | 0.291394 | 2.4:+9928770 | None:intergenic |
| AGAGTGTGTCCATTGGTTCC+AGG | 0.350948 | 2.4:+9930530 | None:intergenic |
| TTCATTAGTTGAATATGAAT+TGG | 0.353285 | 2.4:-9928735 | MS.gene31439:CDS |
| CTATGAGGCTGGCAGTTGAT+AGG | 0.429090 | 2.4:-9928817 | MS.gene31439:CDS |
| CGCAGAATTAAAGTTGCACC+AGG | 0.436054 | 2.4:+9928869 | None:intergenic |
| TCCTAACCGCGGTGGTCGAT+CGG | 0.440345 | 2.4:-9930468 | MS.gene31439:CDS |
| CACTGTCAGAGTGTGTCCAT+TGG | 0.463476 | 2.4:+9930523 | None:intergenic |
| CGCATTGCTGAATGTCTCAT+TGG | 0.467345 | 2.4:-9930422 | MS.gene31439:CDS |
| TGAGGCTGGCAGTTGATAGG+TGG | 0.468787 | 2.4:-9928814 | MS.gene31439:CDS |
| TAACTCTTCGCCGGTGAAGA+CGG | 0.500615 | 2.4:-9930492 | MS.gene31439:CDS |
| AAGGTTGATCAGCTGAAACC+TGG | 0.500822 | 2.4:-9930548 | MS.gene31439:CDS |
| TGCTAAGATTGACATGTTCA+AGG | 0.505137 | 2.4:-9928843 | MS.gene31439:CDS |
| TGATCAACCTTCACGAACAC+TGG | 0.509529 | 2.4:+9930560 | None:intergenic |
| GAGGCTGGCAGTTGATAGGT+GGG | 0.514144 | 2.4:-9928813 | MS.gene31439:CDS |
| GCCGATCGACCACCGCGGTT+AGG | 0.518836 | 2.4:+9930467 | None:intergenic |
| CAGCTGAAACCTGGAACCAA+TGG | 0.525258 | 2.4:-9930539 | MS.gene31439:CDS |
| AATGAGACATTCAGCAATGC+GGG | 0.536511 | 2.4:+9930424 | None:intergenic |
| GGCTGGCAGTTGATAGGTGG+GGG | 0.540000 | 2.4:-9928811 | MS.gene31439:CDS |
| CGGTTAGGAACCGTCTTCAC+CGG | 0.552526 | 2.4:+9930482 | None:intergenic |
| GCTAAGATTGACATGTTCAA+GGG | 0.579635 | 2.4:-9928842 | MS.gene31439:CDS |
| GTTCAAGGGATCTATGAGGC+TGG | 0.583045 | 2.4:-9928828 | MS.gene31439:CDS |
| GAAGGTGGTTAACTCTTCGC+CGG | 0.594629 | 2.4:-9930501 | MS.gene31439:CDS |
| AAGTTGCACCAGGGTTCATG+AGG | 0.612434 | 2.4:+9928879 | None:intergenic |
| TTCACTGCTCGCAATGAACA+AGG | 0.613603 | 2.4:-9930377 | MS.gene31439:intron |
| TAACCGCGGTGGTCGATCGG+CGG | 0.613647 | 2.4:-9930465 | MS.gene31439:CDS |
| AGGCTGGCAGTTGATAGGTG+GGG | 0.623867 | 2.4:-9928812 | MS.gene31439:CDS |
| ACATGTTCAAGGGATCTATG+AGG | 0.627650 | 2.4:-9928832 | MS.gene31439:CDS |
| GCGAAAACCAGTGTTCGTGA+AGG | 0.641317 | 2.4:-9930567 | MS.gene31439:CDS |
| AGACATTCAGCAATGCGGGA+AGG | 0.647720 | 2.4:+9930428 | None:intergenic |
| ACACACTCTGACAGTGAAGG+TGG | 0.655149 | 2.4:-9930516 | MS.gene31439:CDS |
| TGGACACACTCTGACAGTGA+AGG | 0.666395 | 2.4:-9930519 | MS.gene31439:CDS |
| CAATGAGACATTCAGCAATG+CGG | 0.676023 | 2.4:+9930423 | None:intergenic |
| GCAGTGGACCTCATGAACCC+TGG | 0.684427 | 2.4:-9928887 | MS.gene31439:intron |
| AAGACGGTTCCTAACCGCGG+TGG | 0.697992 | 2.4:-9930476 | MS.gene31439:CDS |
| GTGAAGACGGTTCCTAACCG+CGG | 0.698190 | 2.4:-9930479 | MS.gene31439:CDS |
| GCAGAATTAAAGTTGCACCA+GGG | 0.713466 | 2.4:+9928870 | None:intergenic |
| TCACCGCCGATCGACCACCG+CGG | 0.798992 | 2.4:+9930462 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTAGTTTGAAA+AGG | + | chr2.4:9930154-9930173 | None:intergenic | 10.0% |
| !! | CAAACTAATAAAAAAAACTT+TGG | - | chr2.4:9930157-9930176 | MS.gene31439:intron | 15.0% |
| !!! | TAAAAATCGTTGATTTTATA+TGG | - | chr2.4:9929103-9929122 | MS.gene31439:intron | 15.0% |
| !! | CTAATAAAAAAAACTTTGGT+TGG | - | chr2.4:9930161-9930180 | MS.gene31439:intron | 20.0% |
| !! | TTCATTAGTTGAATATGAAT+TGG | - | chr2.4:9930567-9930586 | MS.gene31439:CDS | 20.0% |
| !!! | GTTAAACTGATATTGTTTTA+TGG | - | chr2.4:9929495-9929514 | MS.gene31439:intron | 20.0% |
| !!! | GTTGATTTTATATGGTTTTA+TGG | - | chr2.4:9929111-9929130 | MS.gene31439:intron | 20.0% |
| !!! | TTTATGGATATTTTTTGTTG+TGG | - | chr2.4:9929127-9929146 | MS.gene31439:intron | 20.0% |
| ! | AAAACTTTGGTTGGATTTAT+TGG | - | chr2.4:9930170-9930189 | MS.gene31439:intron | 25.0% |
| ! | AACAAATACTGTAACACAAT+AGG | + | chr2.4:9929714-9929733 | None:intergenic | 25.0% |
| ! | ATTGATTATACGAAAACAGT+TGG | - | chr2.4:9929258-9929277 | MS.gene31439:intron | 25.0% |
| ! | CATTATGAATCTATGATTAG+AGG | - | chr2.4:9929814-9929833 | MS.gene31439:intron | 25.0% |
| ! | GAACTTATGAAAATTGCTTA+TGG | - | chr2.4:9929170-9929189 | MS.gene31439:intron | 25.0% |
| ! | TGTAATAAGTTCATCATGAT+AGG | - | chr2.4:9929220-9929239 | MS.gene31439:intron | 25.0% |
| !!! | ATTCATTTACTTTTATGCAG+TGG | - | chr2.4:9930399-9930418 | MS.gene31439:CDS | 25.0% |
| !!! | CTCATTGATTGTGTTAATTT+TGG | - | chr2.4:9929062-9929081 | MS.gene31439:intron | 25.0% |
| !!! | GTGATTTTACTGTCATTTAT+AGG | - | chr2.4:9929885-9929904 | MS.gene31439:intron | 25.0% |
| AATAAGTTGTTTATCCACAC+AGG | - | chr2.4:9929426-9929445 | MS.gene31439:intron | 30.0% | |
| ACGTAATTGTGAGACTATTT+GGG | - | chr2.4:9929324-9929343 | MS.gene31439:intron | 30.0% | |
| AGAGAATACCAAACAAAAAC+AGG | + | chr2.4:9930048-9930067 | None:intergenic | 30.0% | |
| ATAAGTTGTTTATCCACACA+GGG | - | chr2.4:9929427-9929446 | MS.gene31439:intron | 30.0% | |
| ATTATACGAAAACAGTTGGA+GGG | - | chr2.4:9929262-9929281 | MS.gene31439:intron | 30.0% | |
| GAAAAGGCAAAATATACACA+CGG | + | chr2.4:9930138-9930157 | None:intergenic | 30.0% | |
| GAAAGAGTTCTTAACTCTTA+AGG | - | chr2.4:9928993-9929012 | MS.gene31439:intron | 30.0% | |
| TAAGAGTTAAGAACTCTTTC+AGG | + | chr2.4:9928993-9929012 | None:intergenic | 30.0% | |
| TACGTAATTGTGAGACTATT+TGG | - | chr2.4:9929323-9929342 | MS.gene31439:intron | 30.0% | |
| TAGTGATGTTGCATAAATCA+GGG | - | chr2.4:9929975-9929994 | MS.gene31439:intron | 30.0% | |
| TATGAATCTATGATTAGAGG+AGG | - | chr2.4:9929817-9929836 | MS.gene31439:intron | 30.0% | |
| TCATTTATAGGAATCAGTGT+GGG | - | chr2.4:9929897-9929916 | MS.gene31439:intron | 30.0% | |
| TTATGGTTTCTGCCAATATT+GGG | - | chr2.4:9929512-9929531 | MS.gene31439:intron | 30.0% | |
| TTCAATTGAAACTGTCGTAT+AGG | + | chr2.4:9930212-9930231 | None:intergenic | 30.0% | |
| TTTATGGTTTCTGCCAATAT+TGG | - | chr2.4:9929511-9929530 | MS.gene31439:intron | 30.0% | |
| ! | AAGCTTTAGCCTTTATGTAA+TGG | - | chr2.4:9929552-9929571 | MS.gene31439:intron | 30.0% |
| ! | AGCTTTAGCCTTTATGTAAT+GGG | - | chr2.4:9929553-9929572 | MS.gene31439:intron | 30.0% |
| ! | TGTTCCATTTCTAAGCATTT+TGG | - | chr2.4:9928966-9928985 | MS.gene31439:intron | 30.0% |
| !!! | AACCTGCAAATTTTGAAGTT+AGG | - | chr2.4:9930530-9930549 | MS.gene31439:CDS | 30.0% |
| !!! | ACCTGCAAATTTTGAAGTTA+GGG | - | chr2.4:9930531-9930550 | MS.gene31439:CDS | 30.0% |
| !!! | TTGTTTTGAAAGAGGATATC+AGG | - | chr2.4:9930350-9930369 | MS.gene31439:intron | 30.0% |
| !!! | TTTCTTGCTTGTTTTGAAAG+AGG | - | chr2.4:9930342-9930361 | MS.gene31439:intron | 30.0% |
| AACGAATTTGGGTAACACTA+TGG | + | chr2.4:9929657-9929676 | None:intergenic | 35.0% | |
| AAGACTCGAATGCATTAGTA+TGG | + | chr2.4:9929453-9929472 | None:intergenic | 35.0% | |
| AATCACATGCAAGAAACTCA+AGG | + | chr2.4:9929871-9929890 | None:intergenic | 35.0% | |
| ACAGTATTTGTTTGACACGT+GGG | - | chr2.4:9929722-9929741 | MS.gene31439:intron | 35.0% | |
| ACAGTCATCCCATTACATAA+AGG | + | chr2.4:9929564-9929583 | None:intergenic | 35.0% | |
| AGGTCCAAAATGCTTAGAAA+TGG | + | chr2.4:9928973-9928992 | None:intergenic | 35.0% | |
| AGTGATGTTGCATAAATCAG+GGG | - | chr2.4:9929976-9929995 | MS.gene31439:intron | 35.0% | |
| ATAGTGTTACCCAAATTCGT+TGG | - | chr2.4:9929656-9929675 | MS.gene31439:intron | 35.0% | |
| CAACAGGACAGGAAAAAAAA+CGG | + | chr2.4:9930017-9930036 | None:intergenic | 35.0% | |
| CATTTATAGGAATCAGTGTG+GGG | - | chr2.4:9929898-9929917 | MS.gene31439:intron | 35.0% | |
| CTTTGGTTGGATTTATTGGA+TGG | - | chr2.4:9930174-9930193 | MS.gene31439:intron | 35.0% | |
| GATTATACGAAAACAGTTGG+AGG | - | chr2.4:9929261-9929280 | MS.gene31439:intron | 35.0% | |
| GCATTTAGACAAAGCACAAA+AGG | + | chr2.4:9930317-9930336 | None:intergenic | 35.0% | |
| GCTAAGATTGACATGTTCAA+GGG | - | chr2.4:9930460-9930479 | MS.gene31439:CDS | 35.0% | |
| GTAGTGATGTTGCATAAATC+AGG | - | chr2.4:9929974-9929993 | MS.gene31439:intron | 35.0% | |
| GTCATTTATAGGAATCAGTG+TGG | - | chr2.4:9929896-9929915 | MS.gene31439:intron | 35.0% | |
| TAAAGGCTAAAGCTTCAGTT+AGG | + | chr2.4:9929547-9929566 | None:intergenic | 35.0% | |
| TAATGTAGAGTAAGTTGCTC+TGG | - | chr2.4:9930258-9930277 | MS.gene31439:intron | 35.0% | |
| TACAGTATTTGTTTGACACG+TGG | - | chr2.4:9929721-9929740 | MS.gene31439:intron | 35.0% | |
| TCCCTAACTTCAAAATTTGC+AGG | + | chr2.4:9930535-9930554 | None:intergenic | 35.0% | |
| TGCTAAGATTGACATGTTCA+AGG | - | chr2.4:9930459-9930478 | MS.gene31439:CDS | 35.0% | |
| TTTACAAGATGTGGGGAATT+GGG | - | chr2.4:9929473-9929492 | MS.gene31439:intron | 35.0% | |
| ! | CGAGTCTTTTTACAAGATGT+GGG | - | chr2.4:9929465-9929484 | MS.gene31439:intron | 35.0% |
| ! | GAGTCTTTTTACAAGATGTG+GGG | - | chr2.4:9929466-9929485 | MS.gene31439:intron | 35.0% |
| ! | TCGAGTCTTTTTACAAGATG+TGG | - | chr2.4:9929464-9929483 | MS.gene31439:intron | 35.0% |
| ! | TTTTACAAGATGTGGGGAAT+TGG | - | chr2.4:9929472-9929491 | MS.gene31439:intron | 35.0% |
| !!! | TGCAAATTTTGAAGTTAGGG+AGG | - | chr2.4:9930534-9930553 | MS.gene31439:CDS | 35.0% |
| !!! | TTTTTTTTCCTGTCCTGTTG+AGG | - | chr2.4:9930017-9930036 | MS.gene31439:intron | 35.0% |
| AAGCACAAAAGGATGTGCTA+AGG | + | chr2.4:9930306-9930325 | None:intergenic | 40.0% | |
| AATGAGACATTCAGCAATGC+GGG | + | chr2.4:9928881-9928900 | None:intergenic | 40.0% | |
| ACATGTTCAAGGGATCTATG+AGG | - | chr2.4:9930470-9930489 | MS.gene31439:CDS | 40.0% | |
| CAATGAGACATTCAGCAATG+CGG | + | chr2.4:9928882-9928901 | None:intergenic | 40.0% | |
| CAGTATTTGTTTGACACGTG+GGG | - | chr2.4:9929723-9929742 | MS.gene31439:intron | 40.0% | |
| CCATACCATCCAACGAATTT+GGG | + | chr2.4:9929668-9929687 | None:intergenic | 40.0% | |
| GCAGAATTAAAGTTGCACCA+GGG | + | chr2.4:9930435-9930454 | None:intergenic | 40.0% | |
| GGTGGCTATTGCAAAAGAAT+GGG | - | chr2.4:9929919-9929938 | MS.gene31439:intron | 40.0% | |
| TCCATACCATCCAACGAATT+TGG | + | chr2.4:9929669-9929688 | None:intergenic | 40.0% | |
| TGTGGCATTGTGAGATTGTT+TGG | - | chr2.4:9929145-9929164 | MS.gene31439:intron | 40.0% | |
| TGTTACCCAAATTCGTTGGA+TGG | - | chr2.4:9929660-9929679 | MS.gene31439:intron | 40.0% | |
| ! | AAACAGTTGGAGGGTTTGTT+TGG | - | chr2.4:9929271-9929290 | MS.gene31439:intron | 40.0% |
| ! | ACTCTACATTAGCTTCAGAG+TGG | + | chr2.4:9930249-9930268 | None:intergenic | 40.0% |
| ! | ACTCTAGCTCAGATGCATAT+GGG | + | chr2.4:9929619-9929638 | None:intergenic | 40.0% |
| !!! | AGGTGGTACCTGTTTTTGTT+TGG | - | chr2.4:9930037-9930056 | MS.gene31439:intron | 40.0% |
| !!! | GTGGTGTTGTGGCTATTTTT+TGG | - | chr2.4:9929941-9929960 | MS.gene31439:intron | 40.0% |
| AAAACAGGTACCACCTCAAC+AGG | + | chr2.4:9930033-9930052 | None:intergenic | 45.0% | |
| AGGACACTGAGTCCCAATAT+TGG | + | chr2.4:9929527-9929546 | None:intergenic | 45.0% | |
| CCCAAATTCGTTGGATGGTA+TGG | - | chr2.4:9929665-9929684 | MS.gene31439:intron | 45.0% | |
| CGCAGAATTAAAGTTGCACC+AGG | + | chr2.4:9930436-9930455 | None:intergenic | 45.0% | |
| CGCATTGCTGAATGTCTCAT+TGG | - | chr2.4:9928880-9928899 | MS.gene31439:CDS | 45.0% | |
| GCGTAAAAAGAGGTGGTGAA+AGG | - | chr2.4:9929749-9929768 | MS.gene31439:intron | 45.0% | |
| GGCTATTGCAAAAGAATGGG+TGG | - | chr2.4:9929922-9929941 | MS.gene31439:intron | 45.0% | |
| GGGTGGCTATTGCAAAAGAA+TGG | - | chr2.4:9929918-9929937 | MS.gene31439:intron | 45.0% | |
| TGATCAACCTTCACGAACAC+TGG | + | chr2.4:9928745-9928764 | None:intergenic | 45.0% | |
| TTATAGGAATCAGTGTGGGG+TGG | - | chr2.4:9929901-9929920 | MS.gene31439:intron | 45.0% | |
| TTCACTGCTCGCAATGAACA+AGG | - | chr2.4:9928925-9928944 | MS.gene31439:intron | 45.0% | |
| ! | AAGGTTGATCAGCTGAAACC+TGG | - | chr2.4:9928754-9928773 | MS.gene31439:CDS | 45.0% |
| ! | CAAAAGAATGGGTGGTGTTG+TGG | - | chr2.4:9929930-9929949 | MS.gene31439:intron | 45.0% |
| ! | CACTCTAGCTCAGATGCATA+TGG | + | chr2.4:9929620-9929639 | None:intergenic | 45.0% |
| ! | GTTGGAGGGTTTGTTTGGAT+TGG | - | chr2.4:9929276-9929295 | MS.gene31439:intron | 45.0% |
| ! | TTTTTCCTGTCCTGTTGAGG+TGG | - | chr2.4:9930020-9930039 | MS.gene31439:intron | 45.0% |
| AAGTTGCACCAGGGTTCATG+AGG | + | chr2.4:9930426-9930445 | None:intergenic | 50.0% | |
| ACACACTCTGACAGTGAAGG+TGG | - | chr2.4:9928786-9928805 | MS.gene31439:CDS | 50.0% | |
| AGACATTCAGCAATGCGGGA+AGG | + | chr2.4:9928877-9928896 | None:intergenic | 50.0% | |
| CACTGTCAGAGTGTGTCCAT+TGG | + | chr2.4:9928782-9928801 | None:intergenic | 50.0% | |
| CAGCTGAAACCTGGAACCAA+TGG | - | chr2.4:9928763-9928782 | MS.gene31439:CDS | 50.0% | |
| CTATGAGGCTGGCAGTTGAT+AGG | - | chr2.4:9930485-9930504 | MS.gene31439:CDS | 50.0% | |
| GAAGGTGGTTAACTCTTCGC+CGG | - | chr2.4:9928801-9928820 | MS.gene31439:CDS | 50.0% | |
| GCGAAAACCAGTGTTCGTGA+AGG | - | chr2.4:9928735-9928754 | MS.gene31439:CDS | 50.0% | |
| GTTCAAGGGATCTATGAGGC+TGG | - | chr2.4:9930474-9930493 | MS.gene31439:CDS | 50.0% | |
| GTTGCATAAATCAGGGGCAG+CGG | - | chr2.4:9929982-9930001 | MS.gene31439:intron | 50.0% | |
| TAACTCTTCGCCGGTGAAGA+CGG | - | chr2.4:9928810-9928829 | MS.gene31439:CDS | 50.0% | |
| TGCATTAGTATGGCCCTGTG+TGG | + | chr2.4:9929443-9929462 | None:intergenic | 50.0% | |
| TGGACACACTCTGACAGTGA+AGG | - | chr2.4:9928783-9928802 | MS.gene31439:CDS | 50.0% | |
| TTGCATAAATCAGGGGCAGC+GGG | - | chr2.4:9929983-9930002 | MS.gene31439:intron | 50.0% | |
| ! | CGTGGGGAAAGCGTAAAAAG+AGG | - | chr2.4:9929739-9929758 | MS.gene31439:intron | 50.0% |
| ! | GGGGAAAGCGTAAAAAGAGG+TGG | - | chr2.4:9929742-9929761 | MS.gene31439:intron | 50.0% |
| !! | AGAGTGTGTCCATTGGTTCC+AGG | + | chr2.4:9928775-9928794 | None:intergenic | 50.0% |
| AGGTACCACCTCAACAGGAC+AGG | + | chr2.4:9930028-9930047 | None:intergenic | 55.0% | |
| CGGTTAGGAACCGTCTTCAC+CGG | + | chr2.4:9928823-9928842 | None:intergenic | 55.0% | |
| GTGAAGACGGTTCCTAACCG+CGG | - | chr2.4:9928823-9928842 | MS.gene31439:CDS | 55.0% | |
| ! | TGATAGGTGGGGGCGTATAG+AGG | - | chr2.4:9930501-9930520 | MS.gene31439:CDS | 55.0% |
| !! | AGGCTGGCAGTTGATAGGTG+GGG | - | chr2.4:9930490-9930509 | MS.gene31439:CDS | 55.0% |
| !! | GAGGCTGGCAGTTGATAGGT+GGG | - | chr2.4:9930489-9930508 | MS.gene31439:CDS | 55.0% |
| !! | TGAGGCTGGCAGTTGATAGG+TGG | - | chr2.4:9930488-9930507 | MS.gene31439:CDS | 55.0% |
| AAGACGGTTCCTAACCGCGG+TGG | - | chr2.4:9928826-9928845 | MS.gene31439:CDS | 60.0% | |
| GCAGTGGACCTCATGAACCC+TGG | - | chr2.4:9930415-9930434 | MS.gene31439:CDS | 60.0% | |
| TCCTAACCGCGGTGGTCGAT+CGG | - | chr2.4:9928834-9928853 | MS.gene31439:CDS | 60.0% | |
| !! | GGCTGGCAGTTGATAGGTGG+GGG | - | chr2.4:9930491-9930510 | MS.gene31439:CDS | 60.0% |
| TAACCGCGGTGGTCGATCGG+CGG | - | chr2.4:9928837-9928856 | MS.gene31439:CDS | 65.0% | |
| GCCGATCGACCACCGCGGTT+AGG | + | chr2.4:9928838-9928857 | None:intergenic | 70.0% | |
| TCACCGCCGATCGACCACCG+CGG | + | chr2.4:9928843-9928862 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 9928715 | 9930609 | 9928715 | ID=MS.gene31439 |
| chr2.4 | mRNA | 9928715 | 9930609 | 9928715 | ID=MS.gene31439.t1;Parent=MS.gene31439 |
| chr2.4 | exon | 9930378 | 9930609 | 9930378 | ID=MS.gene31439.t1.exon1;Parent=MS.gene31439.t1 |
| chr2.4 | CDS | 9930378 | 9930609 | 9930378 | ID=cds.MS.gene31439.t1;Parent=MS.gene31439.t1 |
| chr2.4 | exon | 9928715 | 9928905 | 9928715 | ID=MS.gene31439.t1.exon2;Parent=MS.gene31439.t1 |
| chr2.4 | CDS | 9928715 | 9928905 | 9928715 | ID=cds.MS.gene31439.t1;Parent=MS.gene31439.t1 |
| Gene Sequence |
| Protein sequence |
