AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene31708

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31708.t1 MTR_1g006590 94.231 208 12 0 1 208 40 247 1.20e-140 392
MS.gene31708.t1 MTR_1g006490 87.019 208 27 0 1 208 40 247 1.32e-129 365
MS.gene31708.t1 MTR_8g013680 54.545 209 89 3 1 204 40 247 2.62e-72 219
MS.gene31708.t1 MTR_2g101370 56.477 193 83 1 13 204 56 248 6.26e-72 219
MS.gene31708.t1 MTR_4g063090 54.229 201 88 2 1 197 42 242 5.30e-69 211
MS.gene31708.t1 MTR_5g012810 54.857 175 77 2 31 205 74 246 2.53e-62 194
MS.gene31708.t1 MTR_1g115405 49.515 206 99 3 1 201 42 247 6.95e-62 193
MS.gene31708.t1 MTR_7g023350 51.456 206 95 3 1 201 42 247 1.13e-58 185
MS.gene31708.t1 MTR_7g103030 52.195 205 93 3 1 201 42 245 3.62e-58 184
MS.gene31708.t1 MTR_1g077540 43.541 209 110 2 4 205 50 257 4.29e-54 173
MS.gene31708.t1 MTR_6g069040 47.222 180 91 1 30 205 75 254 2.38e-53 171
MS.gene31708.t1 MTR_2g060360 39.500 200 110 3 1 193 40 235 7.25e-42 142
MS.gene31708.t1 MTR_2g094270 36.979 192 97 8 27 202 97 280 8.97e-27 103
MS.gene31708.t1 MTR_7g101190 36.111 180 101 6 27 195 95 271 3.57e-26 102
MS.gene31708.t1 MTR_5g063930 36.082 194 104 5 24 208 78 260 6.56e-25 98.6
MS.gene31708.t1 MTR_4g059390 36.548 197 91 10 27 202 95 278 3.20e-24 97.1
MS.gene31708.t1 MTR_1g070385 33.511 188 118 5 8 193 88 270 7.04e-24 99.0
MS.gene31708.t1 MTR_1g095070 34.104 173 101 5 34 195 35 205 1.62e-23 94.0
MS.gene31708.t1 MTR_1g097840 38.554 166 86 5 27 186 120 275 5.62e-23 94.0
MS.gene31708.t1 MTR_4g006630 35.802 162 89 4 27 182 34 186 6.77e-23 92.0
MS.gene31708.t1 MTR_4g006730 35.802 162 89 4 27 182 34 186 6.99e-23 92.0
MS.gene31708.t1 MTR_4g415300 34.804 204 111 8 2 190 82 278 2.43e-22 92.0
MS.gene31708.t1 MTR_3g008920 37.143 175 100 6 23 193 66 234 3.86e-22 91.3
MS.gene31708.t1 MTR_4g006730 36.025 161 88 4 27 181 121 272 3.95e-22 92.0
MS.gene31708.t1 MTR_3g118010 33.696 184 100 7 27 195 87 263 6.49e-22 90.9
MS.gene31708.t1 MTR_5g010150 35.484 186 94 7 23 190 98 275 6.77e-22 90.9
MS.gene31708.t1 MTR_2g104940 37.267 161 86 5 27 181 126 277 9.82e-22 90.9
MS.gene31708.t1 MTR_5g079570 34.270 178 112 4 30 206 88 261 1.14e-21 90.1
MS.gene31708.t1 MTR_2g017620 33.333 207 131 5 5 208 47 249 1.33e-21 89.7
MS.gene31708.t1 MTR_2g017620 33.333 207 131 5 5 208 61 263 1.79e-21 89.4
MS.gene31708.t1 MTR_8g098375 35.602 191 96 8 23 195 98 279 2.38e-21 89.4
MS.gene31708.t1 MTR_2g017620 34.254 181 113 4 30 208 6 182 6.83e-21 86.3
MS.gene31708.t1 MTR_2g017660 34.673 199 121 7 5 200 62 254 1.35e-20 87.4
MS.gene31708.t1 MTR_4g084880 36.612 183 101 7 26 201 79 253 2.24e-20 86.7
MS.gene31708.t1 MTR_2g017590 32.850 207 132 5 5 208 59 261 3.30e-20 86.3
MS.gene31708.t1 MTR_5g082070 35.912 181 90 8 23 185 101 273 1.18e-19 85.1
MS.gene31708.t1 MTR_3g070210 32.461 191 102 7 23 195 101 282 1.18e-19 85.1
MS.gene31708.t1 MTR_7g010650 32.240 183 120 3 8 189 63 242 9.68e-19 82.4
MS.gene31708.t1 MTR_8g087720 34.807 181 107 6 26 201 80 254 2.41e-18 81.3
MS.gene31708.t1 MTR_2g094270 37.267 161 78 7 27 171 97 250 6.89e-18 79.7
MS.gene31708.t1 MTR_8g087710 30.808 198 128 6 7 201 64 255 1.47e-16 76.3
MS.gene31708.t1 MTR_2g017610 35.484 155 94 4 30 182 87 237 1.69e-16 76.3
MS.gene31708.t1 MTR_2g017570 34.839 155 95 4 30 182 87 237 6.48e-16 74.3
MS.gene31708.t1 MTR_4g075570 30.612 196 110 5 34 208 104 294 3.91e-15 72.8
MS.gene31708.t1 MTR_4g075590 31.319 182 101 4 34 195 90 267 1.89e-14 70.9
MS.gene31708.t1 MTR_1g095070 31.544 149 90 4 34 171 35 182 2.22e-13 66.2
MS.gene31708.t1 MTR_3g070210 30.000 170 93 6 23 174 101 262 1.55e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene31708.t1 AT2G25810 76.214 206 49 0 1 206 40 245 1.72e-106 306
MS.gene31708.t1 AT2G36830 55.610 205 87 2 1 201 42 246 2.65e-72 219
MS.gene31708.t1 AT3G16240 54.106 207 88 4 1 201 40 245 3.40e-71 217
MS.gene31708.t1 AT3G26520 54.229 201 88 2 1 197 43 243 2.16e-68 210
MS.gene31708.t1 AT5G47450 53.535 198 88 2 1 194 40 237 1.52e-66 205
MS.gene31708.t1 AT4G17340 56.250 176 76 1 31 206 74 248 1.88e-65 202
MS.gene31708.t1 AT4G01470 50.000 210 100 3 1 205 42 251 5.50e-61 191
MS.gene31708.t1 AT1G73190 52.459 183 86 1 13 194 65 247 3.14e-58 184
MS.gene31708.t1 AT1G17810 48.913 184 86 1 30 205 83 266 5.21e-56 179
MS.gene31708.t1 AT3G47440 41.709 199 109 3 1 194 44 240 8.00e-42 142
MS.gene31708.t1 AT5G60660 35.829 187 106 6 27 202 95 278 1.56e-27 105
MS.gene31708.t1 AT4G35100 36.316 190 101 8 27 202 88 271 2.17e-25 100
MS.gene31708.t1 AT4G35100 36.316 190 101 8 27 202 88 271 2.17e-25 100
MS.gene31708.t1 AT2G37170 35.135 185 96 7 27 195 136 312 2.25e-25 100
MS.gene31708.t1 AT2G39010 35.556 180 102 6 27 195 94 270 2.85e-25 100
MS.gene31708.t1 AT2G37170 34.759 187 98 7 27 197 93 271 3.08e-25 99.8
MS.gene31708.t1 AT2G37180 35.870 184 100 7 27 197 93 271 7.88e-25 99.0
MS.gene31708.t1 AT3G53420 36.264 182 102 7 27 197 95 273 7.99e-25 99.0
MS.gene31708.t1 AT3G53420 36.264 182 102 7 27 197 95 273 7.99e-25 99.0
MS.gene31708.t1 AT3G54820 35.000 180 103 6 27 195 94 270 6.37e-24 96.3
MS.gene31708.t1 AT1G52180 50.000 84 42 0 86 169 39 122 1.89e-23 90.9
MS.gene31708.t1 AT2G16850 32.821 195 111 7 27 207 86 274 2.80e-22 92.0
MS.gene31708.t1 AT1G80760 36.420 162 88 4 27 182 126 278 3.04e-22 92.4
MS.gene31708.t1 AT4G10380 35.028 177 100 4 27 197 124 291 6.34e-22 91.3
MS.gene31708.t1 AT5G37820 38.710 186 97 7 23 201 84 259 6.94e-22 90.9
MS.gene31708.t1 AT5G37820 38.710 186 97 7 23 201 120 295 7.01e-22 91.7
MS.gene31708.t1 AT4G00430 35.165 182 99 6 23 190 99 275 1.26e-21 90.1
MS.gene31708.t1 AT1G01620 34.973 183 98 7 23 190 26 202 8.41e-21 86.7
MS.gene31708.t1 AT5G37810 37.634 186 99 6 23 201 84 259 8.61e-21 87.8
MS.gene31708.t1 AT1G01620 34.973 183 98 7 23 190 98 274 1.15e-20 87.8
MS.gene31708.t1 AT3G61430 36.517 178 92 7 23 185 98 269 3.79e-20 86.3
MS.gene31708.t1 AT3G61430 36.517 178 92 7 23 185 98 269 3.79e-20 86.3
MS.gene31708.t1 AT2G45960 36.517 178 92 7 23 185 98 269 4.12e-20 86.3
MS.gene31708.t1 AT4G18910 34.807 181 103 5 30 201 101 275 6.58e-20 85.9
MS.gene31708.t1 AT4G23400 34.637 179 104 6 23 190 99 275 8.05e-20 85.5
MS.gene31708.t1 AT1G31885 35.429 175 101 4 17 182 24 195 5.83e-19 82.8
MS.gene31708.t1 AT1G31885 35.429 175 101 4 17 182 78 249 6.99e-19 83.2
MS.gene31708.t1 AT4G19030 33.010 206 124 7 5 201 78 278 7.80e-19 82.8
MS.gene31708.t1 AT3G06100 31.183 186 121 4 10 192 74 255 8.69e-18 79.7
MS.gene31708.t1 AT3G06100 30.928 194 126 5 1 191 18 206 1.39e-17 78.2
MS.gene31708.t1 AT2G34390 31.928 166 103 4 32 190 57 219 7.15e-13 65.9
MS.gene31708.t1 AT2G34390 31.928 166 103 4 32 190 99 261 8.35e-13 66.2
MS.gene31708.t1 AT2G45960 32.927 164 89 7 23 171 98 255 1.86e-11 62.0
MS.gene31708.t1 AT2G45960 32.927 164 89 7 23 171 98 255 2.59e-11 62.0

Find 68 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAGAAAGGAGGACTTTC+TGG 0.139053 1.1:-12610536 MS.gene31708:CDS
ACAACAAATCCAACCAAAAT+TGG 0.151579 1.1:+12610506 None:intergenic
CTCATTGGTGGTGGGCTTGC+TGG 0.168087 1.1:-12610362 MS.gene31708:CDS
TTCTGGACTTGGCCCAATTT+TGG 0.189335 1.1:-12610519 MS.gene31708:CDS
CCAGAAAGTCCTCCTTTCTT+TGG 0.192856 1.1:+12610536 None:intergenic
CTGCATTGGTTAGTGGAAAT+TGG 0.223669 1.1:-12610415 MS.gene31708:CDS
ATGAATCCAGCAAGATCTTT+TGG 0.260996 1.1:-12610440 MS.gene31708:CDS
ATATCCGCCGGTCACGTTTC+CGG 0.326886 1.1:-12613826 MS.gene31708:CDS
TTTGAATCCCGCCGTGACCT+TGG 0.347716 1.1:-12613797 MS.gene31708:CDS
GGGCTAACATCTTGGCTGGC+GGG 0.363981 1.1:-12610481 MS.gene31708:CDS
TTGAATCCCGCCGTGACCTT+GGG 0.371209 1.1:-12613796 MS.gene31708:CDS
GGTGTACTCAAGGAGTAGTT+TGG 0.378665 1.1:-12610613 MS.gene31708:CDS
GTTCACTGTGTATGCAACTA+TGG 0.382620 1.1:-12610564 MS.gene31708:CDS
AAAAGATCTTGCTGGATTCA+TGG 0.384219 1.1:+12610442 None:intergenic
TCGTCCGTTCTATCTTATAT+TGG 0.384445 1.1:-12613747 MS.gene31708:CDS
GTGACCTTGGGCCTCCTTGT+TGG 0.384806 1.1:-12613784 MS.gene31708:CDS
TTGGCTGGCGGGGCTTTCGC+AGG 0.386405 1.1:-12610470 MS.gene31708:CDS
TTTGGACCTGCATTGGTTAG+TGG 0.401163 1.1:-12610422 MS.gene31708:CDS
TGTTGTAGGGGCTAACATCT+TGG 0.405323 1.1:-12610489 MS.gene31708:CDS
TTGGGCCTCTCATTGGTGGT+GGG 0.408100 1.1:-12610370 MS.gene31708:CDS
TGGGTTGGGCCTCTCATTGG+TGG 0.430148 1.1:-12610374 MS.gene31708:CDS
GTTGGGCCTCTCATTGGTGG+TGG 0.433600 1.1:-12610371 MS.gene31708:CDS
GCTAAGTGAAGATGGTTTAG+TGG 0.434560 1.1:-12613896 MS.gene31708:CDS
CAACAAATCCAACCAAAATT+GGG 0.439747 1.1:+12610507 None:intergenic
AAAGGAGGACTTTCTGGACT+TGG 0.441144 1.1:-12610530 MS.gene31708:CDS
TATCTTCTTCATTACCTCAC+TGG 0.445469 1.1:-12613691 MS.gene31708:CDS
TTAGATAAGCTAAGTGAAGA+TGG 0.450182 1.1:-12613904 MS.gene31708:intron
GCAGGTCCAAAAGATCTTGC+TGG 0.456957 1.1:+12610434 None:intergenic
TGGAAATTGGACTGACCAAT+GGG 0.457985 1.1:-12610402 MS.gene31708:CDS
GGCTAACATCTTGGCTGGCG+GGG 0.461965 1.1:-12610480 MS.gene31708:CDS
AGGTCACGGCGGGATTCAAA+TGG 0.475016 1.1:+12613800 None:intergenic
GTGTACTCAAGGAGTAGTTT+GGG 0.480313 1.1:-12610612 MS.gene31708:CDS
AACAAGGAGGCCCAAGGTCA+CGG 0.484302 1.1:+12613786 None:intergenic
CATACACTTAAAAGTGGAGT+AGG 0.484564 1.1:-12610635 MS.gene31708:CDS
CTTCTTCATTACCTCACTGG+TGG 0.484926 1.1:-12613688 MS.gene31708:CDS
CCAGTTCATACACTTAAAAG+TGG 0.496805 1.1:-12610641 MS.gene31708:CDS
GTGGAAATTGGACTGACCAA+TGG 0.502211 1.1:-12610403 MS.gene31708:CDS
CTAAGTGAAGATGGTTTAGT+GGG 0.510777 1.1:-12613895 MS.gene31708:CDS
ATGGCCACCGGAAACGTGAC+CGG 0.514153 1.1:+12613819 None:intergenic
GGGGCTAACATCTTGGCTGG+CGG 0.514242 1.1:-12610482 MS.gene31708:CDS
ACCTTGGGCCTCCTTGTTGG+CGG 0.515259 1.1:-12613781 MS.gene31708:CDS
CGGTGATGTGGCCGCCAACA+AGG 0.518058 1.1:+12613770 None:intergenic
AGGAGGCCCAAGGTCACGGC+GGG 0.520183 1.1:+12613790 None:intergenic
GTAGGGGCTAACATCTTGGC+TGG 0.532312 1.1:-12610485 MS.gene31708:CDS
GTGACCGGCGGATATCATTA+CGG 0.543565 1.1:+12613834 None:intergenic
GATCAACATATAGCATCTGC+AGG 0.544628 1.1:-12613721 MS.gene31708:CDS
CAATTTCCACTAACCAATGC+AGG 0.555256 1.1:+12610416 None:intergenic
ACTATGGTTGATCCAAAGAA+AGG 0.565384 1.1:-12610548 MS.gene31708:CDS
AACTCATGTTCCTCTCCTTG+TGG 0.565628 1.1:-12610309 MS.gene31708:CDS
TTTGGTTGGATTTGTTGTAG+GGG 0.576606 1.1:-12610501 MS.gene31708:CDS
GCAAGCCCACCACCAATGAG+AGG 0.582625 1.1:+12610365 None:intergenic
GCCGCCAACAAGGAGGCCCA+AGG 0.586419 1.1:+12613780 None:intergenic
CTTTCTTCATCCACAAGGAG+AGG 0.595545 1.1:+12610299 None:intergenic
GGCGGGATTCAAATGGCCAC+CGG 0.596177 1.1:+12613807 None:intergenic
CAATCCAATATAAGATAGAA+CGG 0.608884 1.1:+12613743 None:intergenic
TAGAACGGACGACGGTGATG+TGG 0.614235 1.1:+12613758 None:intergenic
AGTGGAGTAGGGTGTACTCA+AGG 0.614383 1.1:-12610623 MS.gene31708:CDS
AGTAGCTTTCTTCATCCACA+AGG 0.615821 1.1:+12610294 None:intergenic
TCCGCCGGTCACGTTTCCGG+TGG 0.622015 1.1:-12613823 MS.gene31708:CDS
ATACACTTAAAAGTGGAGTA+GGG 0.631270 1.1:-12610634 MS.gene31708:CDS
ATGGTTGATCCAAAGAAAGG+AGG 0.657733 1.1:-12610545 MS.gene31708:CDS
GCCACCGGAAACGTGACCGG+CGG 0.669384 1.1:+12613822 None:intergenic
GCGGCCGTAATGATATCCGC+CGG 0.687540 1.1:-12613838 MS.gene31708:CDS
AAGGAGGCCCAAGGTCACGG+CGG 0.691357 1.1:+12613789 None:intergenic
TGATGTGGCCGCCAACAAGG+AGG 0.709158 1.1:+12613773 None:intergenic
TATGGCACAAACTCTTCTAG+CGG 0.717353 1.1:-12613857 MS.gene31708:CDS
CACTTACTAATCCACCAGTG+AGG 0.739020 1.1:+12613677 None:intergenic
ATATAAGATAGAACGGACGA+CGG 0.768400 1.1:+12613750 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTAAAAAAATATTTTTAA+AGG + chr1.1:12612792-12612811 None:intergenic 0.0%
!!! TTATAAAAAATTAAATTTTA+TGG - chr1.1:12612818-12612837 MS.gene31708:intron 0.0%
!! AAAAAAAAACATTTATGTAA+AGG - chr1.1:12611225-12611244 MS.gene31708:intron 10.0%
!!! ACATAAATGTTTTTTTTTTA+AGG + chr1.1:12611223-12611242 None:intergenic 10.0%
!!! ATATAATTTTATTAAAGGTT+TGG - chr1.1:12610406-12610425 MS.gene31708:CDS 10.0%
!!! TTATCTAATGAAATAAATTT+TGG + chr1.1:12610719-12610738 None:intergenic 10.0%
!!! TTTTTTTTATGATGTTAATA+TGG + chr1.1:12612111-12612130 None:intergenic 10.0%
!! CAATTCAAATATATTGATAT+GGG + chr1.1:12610364-12610383 None:intergenic 15.0%
!! GAAAATATTGTTTGATATTA+TGG - chr1.1:12612672-12612691 MS.gene31708:intron 15.0%
!! TAAATTTCTAAACTTTATCT+TGG + chr1.1:12611360-12611379 None:intergenic 15.0%
!! TCAATTCAAATATATTGATA+TGG + chr1.1:12610365-12610384 None:intergenic 15.0%
!! TTATAAGCAATATTTACATA+AGG + chr1.1:12611440-12611459 None:intergenic 15.0%
!!! AATTAATTTCTAAAGTTTAG+AGG - chr1.1:12611317-12611336 MS.gene31708:intron 15.0%
!!! ATTTTTAACTTCTTAACTTA+GGG + chr1.1:12611267-12611286 None:intergenic 15.0%
!!! CTTCACTTAATTTATTTTAA+GGG - chr1.1:12611398-12611417 MS.gene31708:intron 15.0%
!!! TAACCAAATTAAATTTTTAG+AGG - chr1.1:12612942-12612961 MS.gene31708:intron 15.0%
!!! TATTTTTAACTTCTTAACTT+AGG + chr1.1:12611268-12611287 None:intergenic 15.0%
!!! TCTTCACTTAATTTATTTTA+AGG - chr1.1:12611397-12611416 MS.gene31708:intron 15.0%
!! AAATAATGATCAAGATATTC+TGG - chr1.1:12613868-12613887 MS.gene31708:CDS 20.0%
!! AATAGAATATTCGTAACATT+GGG + chr1.1:12611706-12611725 None:intergenic 20.0%
!! GCTTAAAGCAAAAAATTTAA+TGG - chr1.1:12612766-12612785 MS.gene31708:intron 20.0%
!! TAAATTAAGTGAAGAATTCA+AGG + chr1.1:12611392-12611411 None:intergenic 20.0%
!! TACTAATAACTTATGAAGTA+CGG - chr1.1:12610447-12610466 MS.gene31708:CDS 20.0%
!! TCTTTATCAATTGTGATAAA+TGG + chr1.1:12613848-12613867 None:intergenic 20.0%
!! TTTCAAATTACTATATGTGT+CGG - chr1.1:12610550-12610569 MS.gene31708:CDS 20.0%
!!! TATCAAACAATATTTTCGTA+AGG + chr1.1:12612669-12612688 None:intergenic 20.0%
!!! TTTTGAAATATGTAGAATGT+GGG - chr1.1:12613425-12613444 MS.gene31708:intron 20.0%
! AAGTCTCTGAGTTAATTTAA+CGG + chr1.1:12610683-12610702 None:intergenic 25.0%
! AGAATTAAGTGATGAATTCT+AGG - chr1.1:12611287-12611306 MS.gene31708:intron 25.0%
! ATAATGCAAATAATAGGTGT+TGG - chr1.1:12612411-12612430 MS.gene31708:intron 25.0%
! ATGTTAGAAAGTTATTAGCT+AGG + chr1.1:12610619-12610638 None:intergenic 25.0%
! CAATCCAATATAAGATAGAA+CGG + chr1.1:12610895-12610914 None:intergenic 25.0%
! CGGTTATTAAAATATGTTAG+TGG + chr1.1:12612270-12612289 None:intergenic 25.0%
! GAATAGAATATTCGTAACAT+TGG + chr1.1:12611707-12611726 None:intergenic 25.0%
! GGTTGAGTTTATTTGTAATT+AGG + chr1.1:12611964-12611983 None:intergenic 25.0%
! GTTAATTTAACGGTAAAAGT+TGG + chr1.1:12610673-12610692 None:intergenic 25.0%
! TTATTTGCATTATGTGGAAA+AGG + chr1.1:12612404-12612423 None:intergenic 25.0%
! TTCCACATAATGCAAATAAT+AGG - chr1.1:12612405-12612424 MS.gene31708:intron 25.0%
!! AGGCCTCTAAAAATTTAATT+TGG + chr1.1:12612948-12612967 None:intergenic 25.0%
!! TTGCAACAATATCACATTTT+TGG + chr1.1:12613123-12613142 None:intergenic 25.0%
!! TTGGTCATGAATCTAAATTT+TGG + chr1.1:12612847-12612866 None:intergenic 25.0%
!! TTTGTGTTACTAATGAGTTA+GGG + chr1.1:12613461-12613480 None:intergenic 25.0%
!! TTTTTGTCTTGTGTTATCTA+AGG + chr1.1:12613289-12613308 None:intergenic 25.0%
!!! ATATTTTAATAACCGTGTCA+AGG - chr1.1:12612275-12612294 MS.gene31708:intron 25.0%
!!! GTTTTGAAATATGTAGAATG+TGG - chr1.1:12613424-12613443 MS.gene31708:intron 25.0%
!!! TATCTCAATGACTTTTAGTT+TGG + chr1.1:12612162-12612181 None:intergenic 25.0%
!!! TATTTTAATAACCGTGTCAA+GGG - chr1.1:12612276-12612295 MS.gene31708:intron 25.0%
!!! TTTAGTGGGATTATTTTTTG+TGG - chr1.1:12610754-12610773 MS.gene31708:intron 25.0%
!!! TTTTTGTTTTTTGCATTGTC+TGG + chr1.1:12613766-12613785 None:intergenic 25.0%
AACCATATTATGTCATCCAA+TGG + chr1.1:12611918-12611937 None:intergenic 30.0%
AACGAATCTCCTATATAAAC+CGG - chr1.1:12613228-12613247 MS.gene31708:intron 30.0%
AATGTCAACTTCAATCACAA+GGG - chr1.1:12612496-12612515 MS.gene31708:intron 30.0%
ACAACAAATCCAACCAAAAT+TGG + chr1.1:12614132-12614151 None:intergenic 30.0%
ACCAATTATACCAAACTCAA+TGG - chr1.1:12612309-12612328 MS.gene31708:intron 30.0%
ACTCTTATTCATCAGATCAA+AGG + chr1.1:12611847-12611866 None:intergenic 30.0%
AGCTTAACTGATTACCAAAA+AGG + chr1.1:12612882-12612901 None:intergenic 30.0%
AGGAAGTGATATTATACCAT+GGG + chr1.1:12611944-12611963 None:intergenic 30.0%
ATACACTTAAAAGTGGAGTA+GGG - chr1.1:12614001-12614020 MS.gene31708:intron 30.0%
ATACTTGGTATCTTTATGCT+TGG + chr1.1:12611804-12611823 None:intergenic 30.0%
ATATAACAAAGATACGATGG+AGG + chr1.1:12612588-12612607 None:intergenic 30.0%
ATGGTAATAAGCATCATGAA+AGG + chr1.1:12611664-12611683 None:intergenic 30.0%
CAACAAATCCAACCAAAATT+GGG + chr1.1:12614131-12614150 None:intergenic 30.0%
CAATTTGTGTCTTTCATTGT+TGG - chr1.1:12613916-12613935 MS.gene31708:intron 30.0%
CACCTATTATTTGCATTATG+TGG + chr1.1:12612410-12612429 None:intergenic 30.0%
CCAATTATACCAAACTCAAT+GGG - chr1.1:12612310-12612329 MS.gene31708:intron 30.0%
CTAAAGCATATGACATTGTT+CGG + chr1.1:12611753-12611772 None:intergenic 30.0%
GAAATAAATCCGTAAAGATG+TGG + chr1.1:12612190-12612209 None:intergenic 30.0%
GACTATTGTAGGGAATTTAA+AGG + chr1.1:12611782-12611801 None:intergenic 30.0%
GATATTATGCCACATCTTTA+CGG - chr1.1:12612178-12612197 MS.gene31708:intron 30.0%
GATTTATTTCATAGCAACCT+TGG - chr1.1:12612200-12612219 MS.gene31708:intron 30.0%
TACATAAGGAAATGCTAACA+AGG + chr1.1:12611426-12611445 None:intergenic 30.0%
TAGGAAGTGATATTATACCA+TGG + chr1.1:12611945-12611964 None:intergenic 30.0%
TATTGTAGGGAATTTAAAGG+AGG + chr1.1:12611779-12611798 None:intergenic 30.0%
TCAGATCAAAGGTAATTGAA+AGG + chr1.1:12611836-12611855 None:intergenic 30.0%
TCATGATGAACATAGATTCT+TGG - chr1.1:12613325-12613344 MS.gene31708:intron 30.0%
TGAGGATAAAGACAAAAGAA+GGG + chr1.1:12612698-12612717 None:intergenic 30.0%
TTAGATAAGCTAAGTGAAGA+TGG - chr1.1:12610731-12610750 MS.gene31708:intron 30.0%
TTATTAAATTGTTCCCCCAA+AGG + chr1.1:12612466-12612485 None:intergenic 30.0%
TTGAGGATAAAGACAAAAGA+AGG + chr1.1:12612699-12612718 None:intergenic 30.0%
TTTATGCTTGGACTATTGTA+GGG + chr1.1:12611792-12611811 None:intergenic 30.0%
TTTCAACTTGGTAGATACAT+CGG + chr1.1:12612027-12612046 None:intergenic 30.0%
TTTCTCGAATTCTTTCAACT+TGG + chr1.1:12612039-12612058 None:intergenic 30.0%
! AAGATTTCGGGTGAAAAAAA+AGG + chr1.1:12612968-12612987 None:intergenic 30.0%
! ATTTTATGTGCTATCACTCT+AGG + chr1.1:12612362-12612381 None:intergenic 30.0%
! CATCGTATCTTTGTTATATG+GGG - chr1.1:12612589-12612608 MS.gene31708:intron 30.0%
! CCATCGTATCTTTGTTATAT+GGG - chr1.1:12612588-12612607 MS.gene31708:intron 30.0%
! GACTTATTGGAGTTTGTTTA+TGG + chr1.1:12613583-12613602 None:intergenic 30.0%
! GTTTGTGTTACTAATGAGTT+AGG + chr1.1:12613462-12613481 None:intergenic 30.0%
! TCCATCGTATCTTTGTTATA+TGG - chr1.1:12612587-12612606 MS.gene31708:intron 30.0%
! TTGTGTTACTAATGAGTTAG+GGG + chr1.1:12613460-12613479 None:intergenic 30.0%
! TTTTATGTGCTATCACTCTA+GGG + chr1.1:12612361-12612380 None:intergenic 30.0%
!! TTATGGAGGAGATTATTTTG+AGG + chr1.1:12612716-12612735 None:intergenic 30.0%
!!! AATGACTTTTAGTTTGGTGT+TGG + chr1.1:12612156-12612175 None:intergenic 30.0%
!!! ATATCACATTTTTGGTTGCT+TGG + chr1.1:12613115-12613134 None:intergenic 30.0%
!!! ATGACTTTTAGTTTGGTGTT+GGG + chr1.1:12612155-12612174 None:intergenic 30.0%
!!! ATGTTTTAAAGCCTCAAACT+AGG + chr1.1:12613176-12613195 None:intergenic 30.0%
!!! ATTTTGGTTGGATTTGTTGT+AGG - chr1.1:12614132-12614151 MS.gene31708:intron 30.0%
!!! TGAGATGGAAGTTTTATTGA+GGG + chr1.1:12611577-12611596 None:intergenic 30.0%
!!! TTGAGATGGAAGTTTTATTG+AGG + chr1.1:12611578-12611597 None:intergenic 30.0%
!!! TTTTGGTTGGATTTGTTGTA+GGG - chr1.1:12614133-12614152 MS.gene31708:intron 30.0%
AAAAAGGCCTCAATTACTCT+TGG + chr1.1:12612866-12612885 None:intergenic 35.0%
AAAACATGTAATGTTCGACG+AGG - chr1.1:12613189-12613208 MS.gene31708:intron 35.0%
AAAAGATCTTGCTGGATTCA+TGG + chr1.1:12614196-12614215 None:intergenic 35.0%
AAACTCAACCCGTAAAGAAA+TGG - chr1.1:12611974-12611993 MS.gene31708:intron 35.0%
AACACAAGACAAAAACCATG+AGG - chr1.1:12613294-12613313 MS.gene31708:intron 35.0%
AACTAGTACCTACTGCAATA+AGG - chr1.1:12612238-12612257 MS.gene31708:intron 35.0%
AAGGGGAGCTACAAAAAATA+TGG - chr1.1:12612514-12612533 MS.gene31708:intron 35.0%
AAGTTATTAGCTAGGAAGCA+CGG + chr1.1:12610611-12610630 None:intergenic 35.0%
AATAAGATGCCCATTGAGTT+TGG + chr1.1:12612322-12612341 None:intergenic 35.0%
AATGTGTGTTCGGAGATTAT+GGG + chr1.1:12613053-12613072 None:intergenic 35.0%
ACATAATATGGTTATCCCCA+TGG - chr1.1:12611925-12611944 MS.gene31708:intron 35.0%
ACTATGGTTGATCCAAAGAA+AGG - chr1.1:12614087-12614106 MS.gene31708:intron 35.0%
ACTCATTAGTAACACAAACC+AGG - chr1.1:12613463-12613482 MS.gene31708:intron 35.0%
AGTAATCATAGATGTCGTGT+CGG + chr1.1:12610514-12610533 None:intergenic 35.0%
AGTCAATAAGGCAACTCTAT+TGG + chr1.1:12611895-12611914 None:intergenic 35.0%
ATACTCTTTGTGTGAATGAG+GGG + chr1.1:12613386-12613405 None:intergenic 35.0%
ATATAAGATAGAACGGACGA+CGG + chr1.1:12610888-12610907 None:intergenic 35.0%
ATGTCAACTTCAATCACAAG+GGG - chr1.1:12612497-12612516 MS.gene31708:intron 35.0%
ATTCTATTCATGCTCAATCC+TGG - chr1.1:12611718-12611737 MS.gene31708:intron 35.0%
ATTTGTTTGCTTTCGTGTCA+TGG + chr1.1:12611683-12611702 None:intergenic 35.0%
CAAAGAAAACTACCCAAGAA+TGG - chr1.1:12611466-12611485 MS.gene31708:intron 35.0%
CAATGTCAACTTCAATCACA+AGG - chr1.1:12612495-12612514 MS.gene31708:intron 35.0%
CATACACTTAAAAGTGGAGT+AGG - chr1.1:12614000-12614019 MS.gene31708:intron 35.0%
CCAGTTCATACACTTAAAAG+TGG - chr1.1:12613994-12614013 MS.gene31708:intron 35.0%
CCCATATAACAAAGATACGA+TGG + chr1.1:12612591-12612610 None:intergenic 35.0%
CCCATTGAGTTTGGTATAAT+TGG + chr1.1:12612313-12612332 None:intergenic 35.0%
CTAAGTGAAGATGGTTTAGT+GGG - chr1.1:12610740-12610759 MS.gene31708:intron 35.0%
CTCCATTGGATGACATAATA+TGG - chr1.1:12611913-12611932 MS.gene31708:intron 35.0%
CTTTAAGCCTCTTAATCTGT+TGG + chr1.1:12612754-12612773 None:intergenic 35.0%
CTTTATGCTTGGACTATTGT+AGG + chr1.1:12611793-12611812 None:intergenic 35.0%
GAAAGGTTCTTCTTCATACT+TGG + chr1.1:12611819-12611838 None:intergenic 35.0%
GAGAAGAACTCAAGACTTAT+TGG + chr1.1:12613596-12613615 None:intergenic 35.0%
GATACTCTTTGTGTGAATGA+GGG + chr1.1:12613387-12613406 None:intergenic 35.0%
GCTACAAAAAATATGGTGGT+TGG - chr1.1:12612521-12612540 MS.gene31708:intron 35.0%
GGAAGTGATATTATACCATG+GGG + chr1.1:12611943-12611962 None:intergenic 35.0%
GTCAATAAGGCAACTCTATT+GGG + chr1.1:12611894-12611913 None:intergenic 35.0%
GTTTGAAAAGTCTATGAGGA+TGG + chr1.1:12613559-12613578 None:intergenic 35.0%
TACGGATACTTCTCAGATTA+GGG - chr1.1:12610465-12610484 MS.gene31708:CDS 35.0%
TATAGTGCTTCATCTTAAGG+TGG + chr1.1:12613655-12613674 None:intergenic 35.0%
TATCTTCTTCATTACCTCAC+TGG - chr1.1:12610944-12610963 MS.gene31708:intron 35.0%
TCGTATAGTGCTTCATCTTA+AGG + chr1.1:12613658-12613677 None:intergenic 35.0%
TCGTCCGTTCTATCTTATAT+TGG - chr1.1:12610888-12610907 MS.gene31708:intron 35.0%
TGATGAACATAGATTCTTGG+AGG - chr1.1:12613328-12613347 MS.gene31708:intron 35.0%
TGGGATGAAGTTAATAGTAG+AGG + chr1.1:12610345-12610364 None:intergenic 35.0%
TGGTGTTTGAAAAGTCTATG+AGG + chr1.1:12613563-12613582 None:intergenic 35.0%
TTATTGCAGTAGGTACTAGT+TGG + chr1.1:12612239-12612258 None:intergenic 35.0%
TTCATGACCAAGAGTAATTG+AGG - chr1.1:12612856-12612875 MS.gene31708:intron 35.0%
TTCGGAGATTATGGGTAATA+TGG + chr1.1:12613045-12613064 None:intergenic 35.0%
TTGAAGTTGACATTGTTCTC+AGG + chr1.1:12612490-12612509 None:intergenic 35.0%
! AAAAAATATGGTGGTTGGCT+TGG - chr1.1:12612526-12612545 MS.gene31708:intron 35.0%
! AAGAGTAATTGAGGCCTTTT+TGG - chr1.1:12612865-12612884 MS.gene31708:intron 35.0%
! AAGTTGGTTGAATGTGTGTT+CGG + chr1.1:12613063-12613082 None:intergenic 35.0%
! ATCATGAAGAGTATACCTCA+TGG + chr1.1:12613312-12613331 None:intergenic 35.0%
! ATGAATCCAGCAAGATCTTT+TGG - chr1.1:12614195-12614214 MS.gene31708:intron 35.0%
! GTTCCTTTCAGACATTTTTG+AGG + chr1.1:12611639-12611658 None:intergenic 35.0%
! TATTTTCGTAAGGTTGCAGA+TGG + chr1.1:12612659-12612678 None:intergenic 35.0%
! TCTAGGGTTAACTTATGGAT+AGG + chr1.1:12612345-12612364 None:intergenic 35.0%
!! ATCACTCTAGGGTTAACTTA+TGG + chr1.1:12612350-12612369 None:intergenic 35.0%
!! CCACTTTTAAGTGTATGAAC+TGG + chr1.1:12613997-12614016 None:intergenic 35.0%
!! TTTGGTTGGATTTGTTGTAG+GGG - chr1.1:12614134-12614153 MS.gene31708:intron 35.0%
!!! ATGTGGAAAAGGTTTTGTTC+TGG + chr1.1:12612393-12612412 None:intergenic 35.0%
!!! GAGATGGAAGTTTTATTGAG+GGG + chr1.1:12611576-12611595 None:intergenic 35.0%
!!! GGGATTATTTTTTGTGGCTA+TGG - chr1.1:12610760-12610779 MS.gene31708:intron 35.0%
!!! TGACTTTTAGTTTGGTGTTG+GGG + chr1.1:12612154-12612173 None:intergenic 35.0%
!!! TTTTTGGTTGCTTGGCTAAA+TGG + chr1.1:12613107-12613126 None:intergenic 35.0%
!!! TTTTTTCACCCGAAATCTTG+AGG - chr1.1:12612969-12612988 MS.gene31708:intron 35.0%
AACATCTTTACTCCCTTCTG+TGG - chr1.1:12613680-12613699 MS.gene31708:intron 40.0%
ACGGACACAAATATGGATAC+TGG + chr1.1:12610592-12610611 None:intergenic 40.0%
ACGGATACTTCTCAGATTAG+GGG - chr1.1:12610466-12610485 MS.gene31708:CDS 40.0%
AGGACATCATGTGGTAGAAA+TGG + chr1.1:12612446-12612465 None:intergenic 40.0%
AGTAGCTTTCTTCATCCACA+AGG + chr1.1:12614344-12614363 None:intergenic 40.0%
ATGCCCATCCATTTCTTTAC+GGG + chr1.1:12611985-12612004 None:intergenic 40.0%
ATGGGTAATATGGTGTGAGT+AGG + chr1.1:12613035-12613054 None:intergenic 40.0%
ATGGTTGATCCAAAGAAAGG+AGG - chr1.1:12614090-12614109 MS.gene31708:intron 40.0%
CAACCCGTAAAGAAATGGAT+GGG - chr1.1:12611979-12611998 MS.gene31708:intron 40.0%
CAATTTCCACTAACCAATGC+AGG + chr1.1:12614222-12614241 None:intergenic 40.0%
CATGTGGTAGAAATGGTTTG+CGG + chr1.1:12612439-12612458 None:intergenic 40.0%
CGATACTCTTTGTGTGAATG+AGG + chr1.1:12613388-12613407 None:intergenic 40.0%
CTCAAACTAGGCAGAATTAC+AGG + chr1.1:12613164-12613183 None:intergenic 40.0%
CTGTAATTCTGCCTAGTTTG+AGG - chr1.1:12613162-12613181 MS.gene31708:intron 40.0%
CTTAGCATGCACATGATAAG+AGG - chr1.1:12613251-12613270 MS.gene31708:intron 40.0%
GAACACACATTCAACCAACT+TGG - chr1.1:12613062-12613081 MS.gene31708:intron 40.0%
GAATGTGTGTTCGGAGATTA+TGG + chr1.1:12613054-12613073 None:intergenic 40.0%
GAGCTTCATCTTCCATTCTT+GGG + chr1.1:12611481-12611500 None:intergenic 40.0%
GATCAACATATAGCATCTGC+AGG - chr1.1:12610914-12610933 MS.gene31708:intron 40.0%
GATGCCCATCCATTTCTTTA+CGG + chr1.1:12611986-12612005 None:intergenic 40.0%
GCTAAGTGAAGATGGTTTAG+TGG - chr1.1:12610739-12610758 MS.gene31708:intron 40.0%
GGGAGCTACAAAAAATATGG+TGG - chr1.1:12612517-12612536 MS.gene31708:intron 40.0%
GTACGGATACTTCTCAGATT+AGG - chr1.1:12610464-12610483 MS.gene31708:CDS 40.0%
GTCATCCAATGGAGTCAATA+AGG + chr1.1:12611907-12611926 None:intergenic 40.0%
GTGTACTCAAGGAGTAGTTT+GGG - chr1.1:12614023-12614042 MS.gene31708:intron 40.0%
GTTCACTGTGTATGCAACTA+TGG - chr1.1:12614071-12614090 MS.gene31708:intron 40.0%
TAACACAAACCAGGTCATCA+AGG - chr1.1:12613472-12613491 MS.gene31708:intron 40.0%
TATGGATACTGGACAAGACA+CGG + chr1.1:12610581-12610600 None:intergenic 40.0%
TATGGCACAAACTCTTCTAG+CGG - chr1.1:12610778-12610797 MS.gene31708:intron 40.0%
TCAACCCGTAAAGAAATGGA+TGG - chr1.1:12611978-12611997 MS.gene31708:intron 40.0%
TCGCCTCAAAAATGTCTGAA+AGG - chr1.1:12611633-12611652 MS.gene31708:intron 40.0%
TCTACCACATGATGTCCTTT+GGG - chr1.1:12612448-12612467 MS.gene31708:intron 40.0%
TGAGCTTCATCTTCCATTCT+TGG + chr1.1:12611482-12611501 None:intergenic 40.0%
TGGAAATTGGACTGACCAAT+GGG - chr1.1:12614233-12614252 MS.gene31708:intron 40.0%
TGGGTAATATGGTGTGAGTA+GGG + chr1.1:12613034-12613053 None:intergenic 40.0%
TGTAGGGAATTTAAAGGAGG+TGG + chr1.1:12611776-12611795 None:intergenic 40.0%
TTATCATGTGCATGCTAAGC+CGG + chr1.1:12613250-12613269 None:intergenic 40.0%
TTCTACCACATGATGTCCTT+TGG - chr1.1:12612447-12612466 MS.gene31708:intron 40.0%
! AAGATCTTTTGGACCTGCAT+TGG - chr1.1:12614206-12614225 MS.gene31708:intron 40.0%
! AGATTTTCAATGTCCGTTCC+GGG + chr1.1:12613724-12613743 None:intergenic 40.0%
! ATGTGGTAGAAATGGTTTGC+GGG + chr1.1:12612438-12612457 None:intergenic 40.0%
! CAAAGATACGATGGAGGTTT+TGG + chr1.1:12612582-12612601 None:intergenic 40.0%
! CATGCTAAGCCGGTTTATAT+AGG + chr1.1:12613240-12613259 None:intergenic 40.0%
! GAGATTTTCAATGTCCGTTC+CGG + chr1.1:12613725-12613744 None:intergenic 40.0%
! GTATCGAGGTCTTTTCTAGA+TGG - chr1.1:12613402-12613421 MS.gene31708:intron 40.0%
! TTTTGGATGCAAGACCGTTA+GGG + chr1.1:12613359-12613378 None:intergenic 40.0%
!! AGTTGCCTTATTGACTCCAT+TGG - chr1.1:12611899-12611918 MS.gene31708:intron 40.0%
!! CATTCACACAAAGAGTATCG+AGG - chr1.1:12613388-12613407 MS.gene31708:intron 40.0%
!! CTGCATTGGTTAGTGGAAAT+TGG - chr1.1:12614220-12614239 MS.gene31708:intron 40.0%
!! GTTTTAGGCCTCAAGATTTC+GGG + chr1.1:12612980-12612999 None:intergenic 40.0%
!!! ACATTTTTGAGGCGAACGTT+AGG + chr1.1:12611628-12611647 None:intergenic 40.0%
!!! ACCAATGGGTTTTTTGGGTT+GGG - chr1.1:12614247-12614266 MS.gene31708:intron 40.0%
!!! ATTTTTGAGGCGAACGTTAG+GGG + chr1.1:12611626-12611645 None:intergenic 40.0%
!!! CATTTTTGAGGCGAACGTTA+GGG + chr1.1:12611627-12611646 None:intergenic 40.0%
!!! GACTGACCAATGGGTTTTTT+GGG - chr1.1:12614242-12614261 MS.gene31708:intron 40.0%
!!! GGAAGTTTTATTGAGGGGTT+GGG + chr1.1:12611571-12611590 None:intergenic 40.0%
!!! GGTTTTAGGCCTCAAGATTT+CGG + chr1.1:12612981-12613000 None:intergenic 40.0%
!!! TGGAAGTTTTATTGAGGGGT+TGG + chr1.1:12611572-12611591 None:intergenic 40.0%
AAAGGAGGACTTTCTGGACT+TGG - chr1.1:12614105-12614124 MS.gene31708:intron 45.0%
AACTCATGTTCCTCTCCTTG+TGG - chr1.1:12614326-12614345 MS.gene31708:intron 45.0%
AATCTCCTCCATAACTCACC+AGG - chr1.1:12612722-12612741 MS.gene31708:intron 45.0%
AATGTTCGACGAGGAAGCAA+TGG - chr1.1:12613198-12613217 MS.gene31708:intron 45.0%
ACACTTCGCAATGACTGTGA+AGG + chr1.1:12612636-12612655 None:intergenic 45.0%
AGCCTCTTAATCTGTTGGAC+CGG + chr1.1:12612749-12612768 None:intergenic 45.0%
ATCTCCTCCATAACTCACCA+GGG - chr1.1:12612723-12612742 MS.gene31708:intron 45.0%
ATGGTTGAGCAATGGATGTG+TGG + chr1.1:12613540-12613559 None:intergenic 45.0%
ATTCATGCTCAATCCTGGCA+CGG - chr1.1:12611723-12611742 MS.gene31708:intron 45.0%
CACTTACTAATCCACCAGTG+AGG + chr1.1:12610961-12610980 None:intergenic 45.0%
CCAAAGAAAGGAGGACTTTC+TGG - chr1.1:12614099-12614118 MS.gene31708:intron 45.0%
CCAGAAAGTCCTCCTTTCTT+TGG + chr1.1:12614102-12614121 None:intergenic 45.0%
CTACCACATGATGTCCTTTG+GGG - chr1.1:12612449-12612468 MS.gene31708:intron 45.0%
CTATGAGGATGGTTGAGCAA+TGG + chr1.1:12613548-12613567 None:intergenic 45.0%
CTTCTTCATTACCTCACTGG+TGG - chr1.1:12610947-12610966 MS.gene31708:intron 45.0%
CTTGGCTAAATGGAGAGTAG+CGG + chr1.1:12613097-12613116 None:intergenic 45.0%
CTTTCTTCATCCACAAGGAG+AGG + chr1.1:12614339-12614358 None:intergenic 45.0%
GAGTGTAACGCAAGAGCAAA+AGG - chr1.1:12611863-12611882 MS.gene31708:intron 45.0%
GGTGTACTCAAGGAGTAGTT+TGG - chr1.1:12614022-12614041 MS.gene31708:intron 45.0%
GTGGAAATTGGACTGACCAA+TGG - chr1.1:12614232-12614251 MS.gene31708:intron 45.0%
TAATATGGTGTGAGTAGGGC+CGG + chr1.1:12613030-12613049 None:intergenic 45.0%
TACCACATGATGTCCTTTGG+GGG - chr1.1:12612450-12612469 MS.gene31708:intron 45.0%
TCTTGGAGGACATTCCCTAA+CGG - chr1.1:12613342-12613361 MS.gene31708:intron 45.0%
TGTTGTAGGGGCTAACATCT+TGG - chr1.1:12614146-12614165 MS.gene31708:intron 45.0%
TTGAGCAATGGATGTGTGGA+AGG + chr1.1:12613536-12613555 None:intergenic 45.0%
TTGAGCTAGTGACATGGAGA+TGG + chr1.1:12612086-12612105 None:intergenic 45.0%
TTGCAGTAGGTACTAGTTGG+AGG + chr1.1:12612236-12612255 None:intergenic 45.0%
TTGGCTAAATGGAGAGTAGC+GGG + chr1.1:12613096-12613115 None:intergenic 45.0%
! AGGAAGCACGGACACAAATA+TGG + chr1.1:12610599-12610618 None:intergenic 45.0%
! ATGGTGTTGAGCTAGTGACA+TGG + chr1.1:12612092-12612111 None:intergenic 45.0%
! ATTTTCAATGTCCGTTCCGG+GGG + chr1.1:12613722-12613741 None:intergenic 45.0%
! GATTTTCAATGTCCGTTCCG+GGG + chr1.1:12613723-12613742 None:intergenic 45.0%
! TAGCTTTTGCACCCTTGACA+CGG + chr1.1:12612290-12612309 None:intergenic 45.0%
! TTCTGGACTTGGCCCAATTT+TGG - chr1.1:12614116-12614135 MS.gene31708:intron 45.0%
!! AAATATGGTGGTTGGCTTGG+AGG - chr1.1:12612529-12612548 MS.gene31708:intron 45.0%
!! AATATGGTGGTTGGCTTGGA+GGG - chr1.1:12612530-12612549 MS.gene31708:intron 45.0%
!! AGATACGATGGAGGTTTTGG+AGG + chr1.1:12612579-12612598 None:intergenic 45.0%
!! CAATGACTGTGAAGGTGTTG+GGG + chr1.1:12612628-12612647 None:intergenic 45.0%
!! GCAATGACTGTGAAGGTGTT+GGG + chr1.1:12612629-12612648 None:intergenic 45.0%
!! GTTTTGGATGCAAGACCGTT+AGG + chr1.1:12613360-12613379 None:intergenic 45.0%
!! TAGTTTGGTGTTGGGGTTTC+AGG + chr1.1:12612147-12612166 None:intergenic 45.0%
!! TTCTCAGATTAGGGGTGTTC+TGG - chr1.1:12610474-12610493 MS.gene31708:CDS 45.0%
!! TTTGGACCTGCATTGGTTAG+TGG - chr1.1:12614213-12614232 MS.gene31708:intron 45.0%
!!! GACCAATGGGTTTTTTGGGT+TGG - chr1.1:12614246-12614265 MS.gene31708:intron 45.0%
!!! GGACTGACCAATGGGTTTTT+TGG - chr1.1:12614241-12614260 MS.gene31708:intron 45.0%
!!! TTTTTGAGGCGAACGTTAGG+GGG + chr1.1:12611625-12611644 None:intergenic 45.0%
!! AATAAAATTATATTGAAAAT+TGG + chr1.1:12610399-12610418 None:intergenic 5.0%
!!! TTTCAATATAATTTTATTAA+AGG - chr1.1:12610401-12610420 MS.gene31708:CDS 5.0%
ACGTTAGGGGGGAAATTGCT+CGG + chr1.1:12611613-12611632 None:intergenic 50.0%
AGTGGAGTAGGGTGTACTCA+AGG - chr1.1:12614012-12614031 MS.gene31708:intron 50.0%
CACAAACCAGGTCATCAAGG+TGG - chr1.1:12613475-12613494 MS.gene31708:intron 50.0%
GAGGCCTAAAACCCTTGCTT+GGG - chr1.1:12612988-12613007 MS.gene31708:intron 50.0%
GCAGGTCCAAAAGATCTTGC+TGG + chr1.1:12614204-12614223 None:intergenic 50.0%
GCCCAACCCAAAAAACCCAT+TGG + chr1.1:12614251-12614270 None:intergenic 50.0%
GGAGGGGTTGTTAGTTGAGA+TGG + chr1.1:12611592-12611611 None:intergenic 50.0%
GTGACCGGCGGATATCATTA+CGG + chr1.1:12610804-12610823 None:intergenic 50.0%
GTGGTGACATGCACAACTCA+TGG - chr1.1:12613494-12613513 MS.gene31708:intron 50.0%
TCTTTGTGTGAATGAGGGGC+TGG + chr1.1:12613382-12613401 None:intergenic 50.0%
TGAGGCCTAAAACCCTTGCT+TGG - chr1.1:12612987-12613006 MS.gene31708:intron 50.0%
TTCCCCCAAAGGACATCATG+TGG + chr1.1:12612455-12612474 None:intergenic 50.0%
TTGGAGGGAGGTGACATGTA+CGG - chr1.1:12612545-12612564 MS.gene31708:intron 50.0%
TTTACTCCCTTCTGTGGCCT+AGG - chr1.1:12613686-12613705 MS.gene31708:CDS 50.0%
! AAACCCTTGCTTGGGTTGCT+TGG - chr1.1:12612996-12613015 MS.gene31708:intron 50.0%
! ATGTCACCACCTTGATGACC+TGG + chr1.1:12613484-12613503 None:intergenic 50.0%
! CATAGATGTCGTGTCGGTGT+TGG + chr1.1:12610508-12610527 None:intergenic 50.0%
! CGCAATGACTGTGAAGGTGT+TGG + chr1.1:12612630-12612649 None:intergenic 50.0%
! GCAACCCAAGCAAGGGTTTT+AGG + chr1.1:12612995-12613014 None:intergenic 50.0%
! GGAATGCGCCTTATTGCAGT+AGG + chr1.1:12612249-12612268 None:intergenic 50.0%
!! GGACTTGGCCCAATTTTGGT+TGG - chr1.1:12614120-12614139 MS.gene31708:intron 50.0%
!! TTTGGTGTTGGGGTTTCAGG+TGG + chr1.1:12612144-12612163 None:intergenic 50.0%
!!! TGTGAATGAGGGGCTGGTTT+TGG + chr1.1:12613376-12613395 None:intergenic 50.0%
!!! TTTTGAGGCGAACGTTAGGG+GGG + chr1.1:12611624-12611643 None:intergenic 50.0%
!!! TTTTGGGTTGGGCCTCTCAT+TGG - chr1.1:12614258-12614277 MS.gene31708:intron 50.0%
AACAAGGAGGCCCAAGGTCA+CGG + chr1.1:12610852-12610871 None:intergenic 55.0%
ACTGTTGCCTAGGCCACAGA+AGG + chr1.1:12613696-12613715 None:intergenic 55.0%
AGGTCACGGCGGGATTCAAA+TGG + chr1.1:12610838-12610857 None:intergenic 55.0%
ATATCCGCCGGTCACGTTTC+CGG - chr1.1:12610809-12610828 MS.gene31708:intron 55.0%
ATTGTTCGGATGTCCGTGCC+AGG + chr1.1:12611739-12611758 None:intergenic 55.0%
CTGTTGCCTAGGCCACAGAA+GGG + chr1.1:12613695-12613714 None:intergenic 55.0%
GGCCGGTCCAACAGATTAAG+AGG - chr1.1:12612744-12612763 MS.gene31708:intron 55.0%
GTAGGGGCTAACATCTTGGC+TGG - chr1.1:12614150-12614169 MS.gene31708:intron 55.0%
TACATCGGCACTAGTGTGCG+AGG + chr1.1:12612012-12612031 None:intergenic 55.0%
TAGAACGGACGACGGTGATG+TGG + chr1.1:12610880-12610899 None:intergenic 55.0%
TAGGGGGGAAATTGCTCGGA+GGG + chr1.1:12611609-12611628 None:intergenic 55.0%
TGGAGGGAGGTGACATGTAC+GGG - chr1.1:12612546-12612565 MS.gene31708:intron 55.0%
TTAATCTGTTGGACCGGCCC+TGG + chr1.1:12612743-12612762 None:intergenic 55.0%
TTAGGGGGGAAATTGCTCGG+AGG + chr1.1:12611610-12611629 None:intergenic 55.0%
TTGAATCCCGCCGTGACCTT+GGG - chr1.1:12610839-12610858 MS.gene31708:intron 55.0%
TTTGAATCCCGCCGTGACCT+TGG - chr1.1:12610838-12610857 MS.gene31708:intron 55.0%
! GCTAAATGGAGAGTAGCGGG+TGG + chr1.1:12613093-12613112 None:intergenic 55.0%
! GGTGTTGGGGTCATCTAGAG+TGG + chr1.1:12612615-12612634 None:intergenic 55.0%
! TTGGGCCTCTCATTGGTGGT+GGG - chr1.1:12614265-12614284 MS.gene31708:intron 55.0%
!! AGGTACTAGTTGGAGGCGTC+TGG + chr1.1:12612229-12612248 None:intergenic 55.0%
!! TGTCGTGTCGGTGTTGGTGT+CGG + chr1.1:12610502-12610521 None:intergenic 55.0%
!! TTGGAGGCGTCTGGTATCCA+AGG + chr1.1:12612220-12612239 None:intergenic 55.0%
ACCTTGGGCCTCCTTGTTGG+CGG - chr1.1:12610854-12610873 MS.gene31708:intron 60.0%
AGGGCCAAGCAACCCAAGCA+AGG + chr1.1:12613003-12613022 None:intergenic 60.0%
AGGGGGGAAATTGCTCGGAG+GGG + chr1.1:12611608-12611627 None:intergenic 60.0%
ATGGCCACCGGAAACGTGAC+CGG + chr1.1:12610819-12610838 None:intergenic 60.0%
CCTAGGCAACAGTGAACCCC+CGG - chr1.1:12613703-12613722 MS.gene31708:CDS 60.0%
CCTCCATAACTCACCAGGGC+CGG - chr1.1:12612727-12612746 MS.gene31708:intron 60.0%
GCAACAGTGAACCCCCGGAA+CGG - chr1.1:12613708-12613727 MS.gene31708:CDS 60.0%
GCGGCCGTAATGATATCCGC+CGG - chr1.1:12610797-12610816 MS.gene31708:intron 60.0%
GGCGGGATTCAAATGGCCAC+CGG + chr1.1:12610831-12610850 None:intergenic 60.0%
GGCTAACATCTTGGCTGGCG+GGG - chr1.1:12614155-12614174 MS.gene31708:intron 60.0%
GGGCCAAGCAACCCAAGCAA+GGG + chr1.1:12613002-12613021 None:intergenic 60.0%
GGGCTAACATCTTGGCTGGC+GGG - chr1.1:12614154-12614173 MS.gene31708:intron 60.0%
GGGGCTAACATCTTGGCTGG+CGG - chr1.1:12614153-12614172 MS.gene31708:intron 60.0%
GTGACCTTGGGCCTCCTTGT+TGG - chr1.1:12610851-12610870 MS.gene31708:intron 60.0%
GTTGGGCCTCTCATTGGTGG+TGG - chr1.1:12614264-12614283 MS.gene31708:intron 60.0%
TGATGTGGCCGCCAACAAGG+AGG + chr1.1:12610865-12610884 None:intergenic 60.0%
TGTGAGTAGGGCCGGCCTAA+GGG + chr1.1:12613022-12613041 None:intergenic 60.0%
! AGCGGGTGGTCTTGCCAAGT+TGG + chr1.1:12613079-12613098 None:intergenic 60.0%
! GCTTGGGTTGCTTGGCCCTT+AGG - chr1.1:12613004-12613023 MS.gene31708:intron 60.0%
! TGGGTTGGGCCTCTCATTGG+TGG - chr1.1:12614261-12614280 MS.gene31708:intron 60.0%
!! ATGGTGGTTGGCTTGGAGGG+AGG - chr1.1:12612533-12612552 MS.gene31708:intron 60.0%
AAGGAGGCCCAAGGTCACGG+CGG + chr1.1:12610849-12610868 None:intergenic 65.0%
CCGGCCCTGGTGAGTTATGG+AGG + chr1.1:12612730-12612749 None:intergenic 65.0%
CCGGGGGTTCACTGTTGCCT+AGG + chr1.1:12613706-12613725 None:intergenic 65.0%
CGGTGATGTGGCCGCCAACA+AGG + chr1.1:12610868-12610887 None:intergenic 65.0%
GGACCGGCCCTGGTGAGTTA+TGG + chr1.1:12612733-12612752 None:intergenic 65.0%
GGGTTGCTTGGCCCTTAGGC+CGG - chr1.1:12613008-12613027 MS.gene31708:intron 65.0%
GTGTGAGTAGGGCCGGCCTA+AGG + chr1.1:12613023-12613042 None:intergenic 65.0%
AGGAGGCCCAAGGTCACGGC+GGG + chr1.1:12610848-12610867 None:intergenic 70.0%
GCCACCGGAAACGTGACCGG+CGG + chr1.1:12610816-12610835 None:intergenic 70.0%
GCCGCCAACAAGGAGGCCCA+AGG + chr1.1:12610858-12610877 None:intergenic 70.0%
TCCGCCGGTCACGTTTCCGG+TGG - chr1.1:12610812-12610831 MS.gene31708:intron 70.0%
TTGGCTGGCGGGGCTTTCGC+AGG - chr1.1:12614165-12614184 MS.gene31708:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 12610292 12614365 12610292 ID=MS.gene31708
chr1.1 mRNA 12610292 12614365 12610292 ID=MS.gene31708.t1;Parent=MS.gene31708
chr1.1 exon 12614356 12614365 12614356 ID=MS.gene31708.t1.exon1;Parent=MS.gene31708.t1
chr1.1 CDS 12614356 12614365 12614356 ID=cds.MS.gene31708.t1;Parent=MS.gene31708.t1
chr1.1 exon 12613684 12613922 12613684 ID=MS.gene31708.t1.exon2;Parent=MS.gene31708.t1
chr1.1 CDS 12613684 12613922 12613684 ID=cds.MS.gene31708.t1;Parent=MS.gene31708.t1
chr1.1 exon 12610292 12610669 12610292 ID=MS.gene31708.t1.exon3;Parent=MS.gene31708.t1
chr1.1 CDS 12610292 12610669 12610292 ID=cds.MS.gene31708.t1;Parent=MS.gene31708.t1
Gene Sequence

>MS.gene31708

ATGGCTGCTGGTATGTATATAGCAATTACATTGTTACATTTGAAACTATTCCTCTACTATTAACTTCATCCCATATCAATATATTTGAATTGAAATTTCATGATCCAATTTTCAATATAATTTTATTAAAGGTTTGGAATTCAAACTCTGACTACTACTAATAACTTATGAAGTACGGATACTTCTCAGATTAGGGGTGTTCTGGTGCCGACACCAACACCGACACGACATCTATGATTACTCTAAATTATGTCATTTTTTCAAATTACTATATGTGTCGGCGTGTCCGTGTCTTGTCCAGTATCCATATTTGTGTCCGTGCTTCCTAGCTAATAACTTTCTAACATTTGTTTATATAGAAAATTAATGATTGTGATACCAACTTTTACCGTTAAATTAACTCAGAGACTTGTAAGATTGATTTCCAAAATTTATTTCATTAGATAAGCTAAGTGAAGATGGTTTAGTGGGATTATTTTTTGTGGCTATGGCACAAACTCTTCTAGCGGCCGTAATGATATCCGCCGGTCACGTTTCCGGTGGCCATTTGAATCCCGCCGTGACCTTGGGCCTCCTTGTTGGCGGCCACATCACCGTCGTCCGTTCTATCTTATATTGGATTGATCAACATATAGCATCTGCAGGAGCTTGCTATCTTCTTCATTACCTCACTGGTGGATTAGTAAGTGTCATTTTCTATATTCATTCTATCAATTTTGACAAGAATTTATCAACTGAAATTGTTTTACTATACTTTCATTTATTCAATTGATATTTAAATTTCTTCTATTCAAACATAATTGAGATGTATATGTTTATGCATAAATCGTTAGTGAAAAAACTTAGTTTTTTTTTTTAATTATTATTATTTTGAAATGTTCATATTTTATTTGATATTTTCTTAATAAACAAACATTTGTGTAAATTTCCTTAAAAAAAAAACATTTATGTAAAGGATCATGTTAACAAGTGCCCTAAGTTAAGAAGTTAAAAATAGAATTAAGTGATGAATTCTAGGCAAAATAAATTAATTTCTAAAGTTTAGAGGTGTTAAATGCACAATTTCCAAGATAAAGTTTAGAAATTTACTTTTTTCACCTTGAATTCTTCACTTAATTTATTTTAAGGGCACCTTGTTAGCATTTCCTTATGTAAATATTGCTTATAACTTTTACAAAGAAAACTACCCAAGAATGGAAGATGAAGCTCATTCTGACGATCTCTTAACAATAGAATAAGAAACATTAATTTAACATATTTAAAAGCTCTCTTCATGCCCAACCCCTCAATAAAACTTCCATCTCAACTAACAACCCCTCCGAGCAATTTCCCCCCTAACGTTCGCCTCAAAAATGTCTGAAAGGAACAACCTTTCATGATGCTTATTACCATGACACGAAAGCAAACAAATCCCAATGTTACGAATATTCTATTCATGCTCAATCCTGGCACGGACATCCGAACAATGTCATATGCTTTAGCCACCTCCTTTAAATTCCCTACAATAGTCCAAGCATAAAGATACCAAGTATGAAGAAGAACCTTTCAATTACCTTTGATCTGATGAATAAGAGTGTAACGCAAGAGCAAAAGGAATTGCCCAATAGAGTTGCCTTATTGACTCCATTGGATGACATAATATGGTTATCCCCATGGTATAATATCACTTCCTAATTACAAATAAACTCAACCCGTAAAGAAATGGATGGGCATCTCACCTCGCACACTAGTGCCGATGTATCTACCAAGTTGAAAGAATTCGAGAAATCTATCGTGACTATAGCTAAAGAACCATCTCCATGTCACTAGCTCAACACCATATTAACATCATAAAAAAAATGTCTTTGCACCACCTGAAACCCCAACACCAAACTAAAAGTCATTGAGATATTATGCCACATCTTTACGGATTTATTTCATAGCAACCTTGGATACCAGACGCCTCCAACTAGTACCTACTGCAATAAGGCGCATTCCACTAACATATTTTAATAACCGTGTCAAGGGTGCAAAAGCTACCAATTATACCAAACTCAATGGGCATCTTATTCCTATCCATAAGTTAACCCTAGAGTGATAGCACATAAAATATCTCTTGCCAGAACAAAACCTTTTCCACATAATGCAAATAATAGGTGTTGGACCCGCAAACCATTTCTACCACATGATGTCCTTTGGGGGAACAATTTAATAAACCTGAGAACAATGTCAACTTCAATCACAAGGGGAGCTACAAAAAATATGGTGGTTGGCTTGGAGGGAGGTGACATGTACGGGTGTTTATCCTCCAAAACCTCCATCGTATCTTTGTTATATGGGGCCACTCTAGATGACCCCAACACCTTCACAGTCATTGCGAAGTGTCCATCTGCAACCTTACGAAAATATTGTTTGATATTATGGCCCTTCTTTTGTCTTTATCCTCAAAATAATCTCCTCCATAACTCACCAGGGCCGGTCCAACAGATTAAGAGGCTTAAAGCAAAAAATTTAATGGCCTTTAAAAATATTTTTTTAATAGAATATTTATAAAAAATTAAATTTTATGGAGACCAAAATTTAGATTCATGACCAAGAGTAATTGAGGCCTTTTTGGTAATCAGTTAAGCTATACAAATGTCTGTAATATATCTATCATATAATATACTTATAACCAAATTAAATTTTTAGAGGCCTTTTTTTTCACCCGAAATCTTGAGGCCTAAAACCCTTGCTTGGGTTGCTTGGCCCTTAGGCCGGCCCTACTCACACCATATTACCCATAATCTCCGAACACACATTCAACCAACTTGGCAAGACCACCCGCTACTCTCCATTTAGCCAAGCAACCAAAAATGTGATATTGTTGCAAGCACTTGTGATTCTTAAACCTGTAATTCTGCCTAGTTTGAGGCTTTAAAACATGTAATGTTCGACGAGGAAGCAATGGCAACTGAAACGAATCTCCTATATAAACCGGCTTAGCATGCACATGATAAGAGGCATCTTTTGATGCCTTAGATAACACAAGACAAAAACCATGAGGTATACTCTTCATGATGAACATAGATTCTTGGAGGACATTCCCTAACGGTCTTGCATCCAAAACCAGCCCCTCATTCACACAAAGAGTATCGAGGTCTTTTCTAGATGGTTTTGAAATATGTAGAATGTGGGTCTTAAACTCCCCTAACTCATTAGTAACACAAACCAGGTCATCAAGGTGGTGACATGCACAACTCATGGCATGAAAACTTATACACCTTCCACACATCCATTGCTCAACCATCCTCATAGACTTTTCAAACACCATAAACAAACTCCAATAAGTCTTGAGTTCTTCTCGTCACATACTTTTACATTCATCATTATAGAGATGTACCACCTTAAGATGAAGCACTATACGAGAAACATCTTTACTCCCTTCTGTGGCCTAGGCAACAGTGAACCCCCGGAACGGACATTGAAAATCTCATATCTGACTAGAAGTCACCAGACAATGCAAAAAACAAAAAATTAAAATACTACATATATTCTTGAATAACTTATATTATTTTTTATATTTAAAATGATTCCATTTATCACAATTGATAAAGAAAATAATGATCAAGATATTCTGGATTATAAAAAGAAAATAGATAAAATCAATTTGTGTCTTTCATTGTTGGAGAACTAATTAAGAATATGATTGTACATTGTATCTTGCATGATCAACAGACAACTCCAGTTCATACACTTAAAAGTGGAGTAGGGTGTACTCAAGGAGTAGTTTGGGAAATTGTGTTGACATTCTCTTTGTTGTTCACTGTGTATGCAACTATGGTTGATCCAAAGAAAGGAGGACTTTCTGGACTTGGCCCAATTTTGGTTGGATTTGTTGTAGGGGCTAACATCTTGGCTGGCGGGGCTTTCGCAGGTGCTTCCATGAATCCAGCAAGATCTTTTGGACCTGCATTGGTTAGTGGAAATTGGACTGACCAATGGGTTTTTTGGGTTGGGCCTCTCATTGGTGGTGGGCTTGCTGGTTTCATTTATGAGAATTTTCTTATCAATAGAACTCATGTTCCTCTCCTTGTGGATGAAGAAAGCTACTAA
Protein sequence

>MS.gene31708.t1

MAADKLSEDGLVGLFFVAMAQTLLAAVMISAGHVSGGHLNPAVTLGLLVGGHITVVRSILYWIDQHIASAGACYLLHYLTGGLTTPVHTLKSGVGCTQGVVWEIVLTFSLLFTVYATMVDPKKGGLSGLGPILVGFVVGANILAGGAFAGASMNPARSFGPALVSGNWTDQWVFWVGPLIGGGLAGFIYENFLINRTHVPLLVDEESY