Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09808.t1 | XP_003625583.1 | 89.4 | 611 | 64 | 1 | 1 | 611 | 1 | 610 | 5.30E-218 | 767.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09808.t1 | Q9ZQC5 | 34.9 | 625 | 347 | 7 | 1 | 609 | 1 | 581 | 1.6e-53 | 212.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09808.t1 | G7L1R0 | 89.4 | 611 | 64 | 1 | 1 | 611 | 1 | 610 | 3.8e-218 | 767.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene09808 | 0.803127 | 4.04E-49 | -1.69E-46 |
| MS.gene049660 | MS.gene09808 | 0.803474 | 3.43E-49 | -1.69E-46 |
| MS.gene049697 | MS.gene09808 | 0.810045 | 1.40E-50 | -1.69E-46 |
| MS.gene04985 | MS.gene09808 | 0.801706 | 7.93E-49 | -1.69E-46 |
| MS.gene049989 | MS.gene09808 | 0.873858 | 1.06E-67 | -1.69E-46 |
| MS.gene050297 | MS.gene09808 | 0.818292 | 2.12E-52 | -1.69E-46 |
| MS.gene05054 | MS.gene09808 | 0.802473 | 5.52E-49 | -1.69E-46 |
| MS.gene050648 | MS.gene09808 | 0.808473 | 3.04E-50 | -1.69E-46 |
| MS.gene051263 | MS.gene09808 | 0.800071 | 1.71E-48 | -1.69E-46 |
| MS.gene051629 | MS.gene09808 | 0.836316 | 1.00E-56 | -1.69E-46 |
| MS.gene051816 | MS.gene09808 | 0.833935 | 4.01E-56 | -1.69E-46 |
| MS.gene052367 | MS.gene09808 | 0.817446 | 3.28E-52 | -1.69E-46 |
| MS.gene053348 | MS.gene09808 | 0.823372 | 1.44E-53 | -1.69E-46 |
| MS.gene053416 | MS.gene09808 | 0.846153 | 2.60E-59 | -1.69E-46 |
| MS.gene053417 | MS.gene09808 | 0.847966 | 8.27E-60 | -1.69E-46 |
| MS.gene053929 | MS.gene09808 | 0.82476 | 6.78E-54 | -1.69E-46 |
| MS.gene055308 | MS.gene09808 | 0.802623 | 5.14E-49 | -1.69E-46 |
| MS.gene055957 | MS.gene09808 | 0.82512 | 5.57E-54 | -1.69E-46 |
| MS.gene056041 | MS.gene09808 | 0.834704 | 2.57E-56 | -1.69E-46 |
| MS.gene056042 | MS.gene09808 | 0.810541 | 1.10E-50 | -1.69E-46 |
| MS.gene056228 | MS.gene09808 | 0.831272 | 1.83E-55 | -1.69E-46 |
| MS.gene05640 | MS.gene09808 | 0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene056526 | MS.gene09808 | 0.847196 | 1.35E-59 | -1.69E-46 |
| MS.gene056528 | MS.gene09808 | 0.812317 | 4.50E-51 | -1.69E-46 |
| MS.gene058196 | MS.gene09808 | 0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene058197 | MS.gene09808 | 0.826391 | 2.78E-54 | -1.69E-46 |
| MS.gene058198 | MS.gene09808 | 0.823805 | 1.14E-53 | -1.69E-46 |
| MS.gene058827 | MS.gene09808 | 0.850082 | 2.14E-60 | -1.69E-46 |
| MS.gene058828 | MS.gene09808 | 0.82674 | 2.30E-54 | -1.69E-46 |
| MS.gene059300 | MS.gene09808 | 0.854376 | 1.28E-61 | -1.69E-46 |
| MS.gene059553 | MS.gene09808 | 0.826628 | 2.44E-54 | -1.69E-46 |
| MS.gene060473 | MS.gene09808 | 0.854531 | 1.16E-61 | -1.69E-46 |
| MS.gene060565 | MS.gene09808 | 0.834622 | 2.69E-56 | -1.69E-46 |
| MS.gene06057 | MS.gene09808 | 0.823752 | 1.17E-53 | -1.69E-46 |
| MS.gene06093 | MS.gene09808 | 0.831146 | 1.97E-55 | -1.69E-46 |
| MS.gene061099 | MS.gene09808 | 0.800781 | 1.23E-48 | -1.69E-46 |
| MS.gene061260 | MS.gene09808 | 0.818089 | 2.35E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09808 | MS.gene39455 | PPI |
| MS.gene50208 | MS.gene09808 | PPI |
| MS.gene33795 | MS.gene09808 | PPI |
| MS.gene09808 | MS.gene31961 | PPI |
| MS.gene09808 | MS.gene037356 | PPI |
| MS.gene03912 | MS.gene09808 | PPI |
| MS.gene09808 | MS.gene68625 | PPI |
| MS.gene09808 | MS.gene39229 | PPI |
| MS.gene09808 | MS.gene76250 | PPI |
| MS.gene09808 | MS.gene029217 | PPI |
| MS.gene09808 | MS.gene008635 | PPI |
| MS.gene26785 | MS.gene09808 | PPI |
| MS.gene31930 | MS.gene09808 | PPI |
| MS.gene09808 | MS.gene015702 | PPI |
| MS.gene09808 | MS.gene029219 | PPI |
| MS.gene09808 | MS.gene034650 | PPI |
| MS.gene020474 | MS.gene09808 | PPI |
| MS.gene09808 | MS.gene57038 | PPI |
| MS.gene09808 | MS.gene93135 | PPI |
| MS.gene09808 | MS.gene009801 | PPI |
| MS.gene09808 | MS.gene05775 | PPI |
| MS.gene030154 | MS.gene09808 | PPI |
| MS.gene09808 | MS.gene048551 | PPI |
| MS.gene09808 | MS.gene064148 | PPI |
| MS.gene54155 | MS.gene09808 | PPI |
| MS.gene09808 | MS.gene56986 | PPI |
| MS.gene09808 | MS.gene065074 | PPI |
| MS.gene23912 | MS.gene09808 | PPI |
| MS.gene09808 | MS.gene063692 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09808.t1 | MTR_7g100730 | 95.090 | 611 | 29 | 1 | 1 | 611 | 1 | 610 | 0.0 | 1061 |
| MS.gene09808.t1 | MTR_1g066850 | 60.995 | 623 | 194 | 7 | 1 | 611 | 1 | 586 | 0.0 | 635 |
| MS.gene09808.t1 | MTR_7g061150 | 94.780 | 364 | 18 | 1 | 248 | 611 | 1 | 363 | 0.0 | 631 |
| MS.gene09808.t1 | MTR_4g461060 | 44.674 | 629 | 315 | 7 | 1 | 608 | 1 | 617 | 4.52e-144 | 431 |
| MS.gene09808.t1 | MTR_4g461060 | 45.848 | 578 | 284 | 5 | 51 | 608 | 46 | 614 | 5.99e-141 | 423 |
| MS.gene09808.t1 | MTR_2g093260 | 40.995 | 422 | 219 | 9 | 195 | 608 | 83 | 482 | 3.29e-69 | 233 |
| MS.gene09808.t1 | MTR_2g093240 | 42.857 | 112 | 30 | 2 | 499 | 610 | 3 | 80 | 2.08e-17 | 77.8 |
| MS.gene09808.t1 | MTR_2g093250 | 45.098 | 102 | 52 | 2 | 309 | 410 | 112 | 209 | 2.94e-14 | 73.2 |
| MS.gene09808.t1 | MTR_5g007350 | 28.107 | 338 | 178 | 12 | 3 | 305 | 22 | 329 | 2.58e-12 | 70.5 |
| MS.gene09808.t1 | MTR_4g478190 | 27.124 | 306 | 193 | 11 | 11 | 290 | 11 | 312 | 4.83e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09808.t1 | AT2G37080 | 48.259 | 632 | 253 | 14 | 1 | 610 | 1 | 580 | 3.06e-160 | 471 |
| MS.gene09808.t1 | AT2G37080 | 48.107 | 634 | 253 | 15 | 1 | 610 | 1 | 582 | 2.16e-158 | 467 |
| MS.gene09808.t1 | AT2G37080 | 48.107 | 634 | 253 | 15 | 1 | 610 | 1 | 582 | 2.16e-158 | 467 |
| MS.gene09808.t1 | AT5G60210 | 39.123 | 616 | 312 | 10 | 1 | 608 | 1 | 561 | 4.51e-106 | 332 |
| MS.gene09808.t1 | AT5G60210 | 39.123 | 616 | 312 | 10 | 1 | 608 | 1 | 561 | 4.51e-106 | 332 |
| MS.gene09808.t1 | AT5G60210 | 39.123 | 616 | 312 | 10 | 1 | 608 | 1 | 561 | 4.51e-106 | 332 |
| MS.gene09808.t1 | AT5G60210 | 39.123 | 616 | 312 | 10 | 1 | 608 | 1 | 561 | 4.51e-106 | 332 |
| MS.gene09808.t1 | AT5G60210 | 38.462 | 611 | 313 | 10 | 6 | 608 | 30 | 585 | 2.66e-102 | 322 |
| MS.gene09808.t1 | AT5G60210 | 38.462 | 611 | 313 | 10 | 6 | 608 | 30 | 585 | 2.66e-102 | 322 |
| MS.gene09808.t1 | AT3G53350 | 38.655 | 357 | 171 | 15 | 1 | 336 | 1 | 330 | 9.71e-46 | 167 |
| MS.gene09808.t1 | AT3G53350 | 36.695 | 357 | 102 | 12 | 261 | 610 | 154 | 393 | 1.24e-36 | 141 |
| MS.gene09808.t1 | AT3G53350 | 38.655 | 357 | 171 | 15 | 1 | 336 | 1 | 330 | 9.71e-46 | 167 |
| MS.gene09808.t1 | AT3G53350 | 36.695 | 357 | 102 | 12 | 261 | 610 | 154 | 393 | 1.24e-36 | 141 |
| MS.gene09808.t1 | AT3G53350 | 38.440 | 359 | 171 | 16 | 1 | 336 | 1 | 332 | 6.81e-44 | 162 |
| MS.gene09808.t1 | AT3G53350 | 32.914 | 477 | 181 | 15 | 145 | 610 | 47 | 395 | 4.63e-37 | 142 |
| MS.gene09808.t1 | AT3G53350 | 38.440 | 359 | 171 | 16 | 1 | 336 | 1 | 332 | 6.81e-44 | 162 |
| MS.gene09808.t1 | AT3G53350 | 32.914 | 477 | 181 | 15 | 145 | 610 | 47 | 395 | 4.63e-37 | 142 |
| MS.gene09808.t1 | AT3G53350 | 38.440 | 359 | 171 | 16 | 1 | 336 | 1 | 332 | 6.81e-44 | 162 |
| MS.gene09808.t1 | AT3G53350 | 32.914 | 477 | 181 | 15 | 145 | 610 | 47 | 395 | 4.63e-37 | 142 |
| MS.gene09808.t1 | AT3G53350 | 37.892 | 351 | 170 | 15 | 7 | 336 | 18 | 341 | 2.70e-41 | 155 |
| MS.gene09808.t1 | AT3G53350 | 36.236 | 356 | 105 | 11 | 261 | 610 | 165 | 404 | 2.54e-36 | 140 |
| MS.gene09808.t1 | AT3G53350 | 35.659 | 387 | 171 | 16 | 1 | 336 | 1 | 360 | 1.40e-39 | 150 |
| MS.gene09808.t1 | AT3G53350 | 36.236 | 356 | 105 | 11 | 261 | 610 | 184 | 423 | 6.69e-36 | 140 |
| MS.gene09808.t1 | AT3G53350 | 37.677 | 353 | 170 | 16 | 7 | 336 | 18 | 343 | 1.65e-39 | 150 |
| MS.gene09808.t1 | AT3G53350 | 32.983 | 476 | 182 | 15 | 145 | 610 | 58 | 406 | 1.47e-36 | 141 |
| MS.gene09808.t1 | AT3G53350 | 37.677 | 353 | 170 | 16 | 7 | 336 | 18 | 343 | 1.65e-39 | 150 |
| MS.gene09808.t1 | AT3G53350 | 32.983 | 476 | 182 | 15 | 145 | 610 | 58 | 406 | 1.47e-36 | 141 |
| MS.gene09808.t1 | AT1G78430 | 35.294 | 170 | 97 | 4 | 440 | 608 | 163 | 320 | 1.17e-15 | 79.0 |
| MS.gene09808.t1 | AT1G17140 | 35.028 | 177 | 95 | 7 | 440 | 608 | 176 | 340 | 3.35e-13 | 71.6 |
| MS.gene09808.t1 | AT1G17140 | 35.028 | 177 | 95 | 7 | 440 | 608 | 176 | 340 | 3.35e-13 | 71.6 |
Find 116 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTTCCTTTGGGACATTTC+TGG | 0.157878 | 7.1:-7779552 | None:intergenic |
| CAGGAAAATGAGGAGATAAA+TGG | 0.230127 | 7.1:+7781127 | MS.gene09808:CDS |
| TCACGAGCTTTAGAAGTAAT+TGG | 0.259559 | 7.1:+7780917 | MS.gene09808:CDS |
| TACAATCTTTACCTTGCTTT+TGG | 0.268708 | 7.1:-7778947 | None:intergenic |
| GTCTGATCATGCTCAGATTC+AGG | 0.282526 | 7.1:+7780814 | MS.gene09808:CDS |
| TCATCTGTGTCTTCTAAATA+AGG | 0.285675 | 7.1:-7781943 | None:intergenic |
| CAGAGTTGGAAGCCGAATTA+AGG | 0.288025 | 7.1:+7781770 | MS.gene09808:CDS |
| CAATTTATGTATTTCATTCA+TGG | 0.304232 | 7.1:-7780735 | None:intergenic |
| GTTTCAAATACCTCAGATAT+TGG | 0.308574 | 7.1:-7779717 | None:intergenic |
| GGTATCTTTCTTATGGGGTT+TGG | 0.312528 | 7.1:-7779648 | None:intergenic |
| TTGTAGCAGGTGATTTCCTT+TGG | 0.322465 | 7.1:-7779563 | None:intergenic |
| AACTTTCAATCTCCTTAATT+CGG | 0.325865 | 7.1:-7781782 | None:intergenic |
| ACTTTCGGACTCATGTCTTT+TGG | 0.331128 | 7.1:-7779669 | None:intergenic |
| AATCCATTGAGTGCTGCTTT+TGG | 0.335138 | 7.1:-7780694 | None:intergenic |
| CAACTGCTCTACTTCAGATT+TGG | 0.349820 | 7.1:-7781173 | None:intergenic |
| GACTAGCAAGGTTCAGGAAT+TGG | 0.351633 | 7.1:+7780418 | MS.gene09808:CDS |
| AACCTGCGTTCGTTTACTTT+CGG | 0.363041 | 7.1:-7779684 | None:intergenic |
| TAGTGAAGCTATCTCTGTTA+TGG | 0.380107 | 7.1:+7780853 | MS.gene09808:CDS |
| TTCTTGAAGTCGTGCTTCTT+CGG | 0.385930 | 7.1:-7780615 | None:intergenic |
| TATCCTCAAGATGGAGATAA+AGG | 0.393747 | 7.1:+7781576 | MS.gene09808:CDS |
| GAAGCGGACTAGCAAGGTTC+AGG | 0.395117 | 7.1:+7780412 | MS.gene09808:CDS |
| CAGAGTTTGGTGTCTTCAAC+TGG | 0.396120 | 7.1:-7779602 | None:intergenic |
| TTCTAATCTGCAATGTGCTC+TGG | 0.400148 | 7.1:-7781243 | None:intergenic |
| TTGGGACATTTCTGGAGCAT+TGG | 0.409864 | 7.1:-7779544 | None:intergenic |
| TGGCAAAATGCAAATGCAAT+TGG | 0.415697 | 7.1:+7780937 | MS.gene09808:CDS |
| GTTGTTAGTCTGAGAAAATT+CGG | 0.416762 | 7.1:-7780786 | None:intergenic |
| TGTAGCAGGTGATTTCCTTT+GGG | 0.418456 | 7.1:-7779562 | None:intergenic |
| TAGAAGTGCTTACGAACAAC+TGG | 0.419369 | 7.1:+7781261 | MS.gene09808:CDS |
| CTGAGAAAGTCCCTTTCCAT+TGG | 0.424088 | 7.1:-7781107 | None:intergenic |
| GACAAAACTTAGCTATGTAA+TGG | 0.430384 | 7.1:+7781675 | MS.gene09808:CDS |
| CTCAATGGATTCATCTGCTC+TGG | 0.431947 | 7.1:+7780706 | MS.gene09808:CDS |
| TACTTCTAAAGCTCGTGATT+CGG | 0.433669 | 7.1:-7780912 | None:intergenic |
| TCTTATGGGGTTTGGTGAGG+AGG | 0.433762 | 7.1:-7779640 | None:intergenic |
| GCCGAGTTAGAACCAGAGTT+TGG | 0.447004 | 7.1:-7779615 | None:intergenic |
| CAATGGAAAGGGACTTTCTC+AGG | 0.447323 | 7.1:+7781108 | MS.gene09808:CDS |
| TTCCTCTTGGTATCTTATCT+CGG | 0.450936 | 7.1:-7781215 | None:intergenic |
| AGGAAAATGAGGAGATAAAT+GGG | 0.455434 | 7.1:+7781128 | MS.gene09808:CDS |
| CGAACAGCTAGATGCTGCTC+AGG | 0.462034 | 7.1:+7781738 | MS.gene09808:CDS |
| ATCTCAATTGCTGAGTTTGT+CGG | 0.465945 | 7.1:+7781390 | MS.gene09808:CDS |
| TATGGGGTTTGGTGAGGAGG+AGG | 0.467777 | 7.1:-7779637 | None:intergenic |
| CTTTCTTATGGGGTTTGGTG+AGG | 0.468528 | 7.1:-7779643 | None:intergenic |
| AAAATCTCAAGCAAAATCCT+TGG | 0.473358 | 7.1:+7781051 | MS.gene09808:CDS |
| TGCTCTGGATGTATTCCTCT+TGG | 0.476597 | 7.1:-7781228 | None:intergenic |
| CTGAATTATACGAGGAATTG+AGG | 0.480140 | 7.1:+7781317 | MS.gene09808:CDS |
| AACAGCAAGGGCTGCAGAGA+AGG | 0.483686 | 7.1:+7781645 | MS.gene09808:CDS |
| GAGTTTGTCGGCGGAGAATG+AGG | 0.485321 | 7.1:+7781402 | MS.gene09808:CDS |
| AAAAGCAAGCCTGATGGAAA+AGG | 0.487342 | 7.1:+7781366 | MS.gene09808:CDS |
| AGAACTCAGTAAAATATCTC+AGG | 0.492404 | 7.1:+7780634 | MS.gene09808:CDS |
| CTGAGCAGCATCTAGCTGTT+CGG | 0.497006 | 7.1:-7781737 | None:intergenic |
| CTTTCTACCACCGGAAACAA+TGG | 0.502144 | 7.1:+7781850 | MS.gene09808:CDS |
| TAATTCAGCCTCTCTCTCAC+TGG | 0.507829 | 7.1:-7781302 | None:intergenic |
| AAGTCGTGCTTCTTCGGAAG+CGG | 0.510056 | 7.1:-7780609 | None:intergenic |
| ATGAAAAGCGATCTACTGAC+AGG | 0.512449 | 7.1:+7781443 | MS.gene09808:CDS |
| TTCAACTGGCGAGCAGTTCG+AGG | 0.516234 | 7.1:-7779588 | None:intergenic |
| ATCTCAAGCAAAATCCTTGG+AGG | 0.518596 | 7.1:+7781054 | MS.gene09808:CDS |
| CTTGACACTGATTCAACCAA+TGG | 0.522965 | 7.1:+7781091 | MS.gene09808:CDS |
| AACTTAACTCATCGGAGTCA+TGG | 0.524619 | 7.1:+7780489 | MS.gene09808:CDS |
| CAAGATGGAGATAAAGGAGT+TGG | 0.532655 | 7.1:+7781582 | MS.gene09808:CDS |
| ACTGTCCCTGTCAAAAGAGC+TGG | 0.533173 | 7.1:+7780556 | MS.gene09808:CDS |
| GCAGTTCGAGGAGTTGTAGC+AGG | 0.533468 | 7.1:-7779576 | None:intergenic |
| GGGACTTTCTCAGGAAAATG+AGG | 0.534716 | 7.1:+7781117 | MS.gene09808:CDS |
| AGAAAACAGTATCCTCAAGA+TGG | 0.537638 | 7.1:+7781567 | MS.gene09808:CDS |
| AGAGCAGTTGAAATCTGCAT+TGG | 0.538094 | 7.1:+7781186 | MS.gene09808:CDS |
| TGTCCAAAAGCAGCACTCAA+TGG | 0.543706 | 7.1:+7780691 | MS.gene09808:CDS |
| GACAGTGGAGACACTCCAAT+CGG | 0.544738 | 7.1:+7780973 | MS.gene09808:CDS |
| CACTGAAGAGGCTGTTGAGT+CGG | 0.545865 | 7.1:+7781618 | MS.gene09808:CDS |
| ATCAGAATCCAGTGAGAGAG+AGG | 0.548200 | 7.1:+7781294 | MS.gene09808:CDS |
| ACTGATTCAACCAATGGAAA+GGG | 0.548724 | 7.1:+7781097 | MS.gene09808:CDS |
| GGAAACAATGGAAAATGTGT+AGG | 0.557199 | 7.1:+7781862 | MS.gene09808:CDS |
| AGTTTGTCGGCGGAGAATGA+GGG | 0.561099 | 7.1:+7781403 | MS.gene09808:CDS |
| CACTGATTCAACCAATGGAA+AGG | 0.561480 | 7.1:+7781096 | MS.gene09808:CDS |
| GAATTGAGGAAAACTATAGC+TGG | 0.567328 | 7.1:+7781331 | MS.gene09808:CDS |
| ATGCTCAGATTCAGGACTTG+AGG | 0.568384 | 7.1:+7780822 | MS.gene09808:CDS |
| AAGGTCCGAAAACTGTTGAC+GGG | 0.568934 | 7.1:-7780585 | None:intergenic |
| ATGGAAGACAAAAGTTCAAG+AGG | 0.570660 | 7.1:+7780508 | MS.gene09808:CDS |
| GAAACAATGGAAAATGTGTA+GGG | 0.570873 | 7.1:+7781863 | MS.gene09808:CDS |
| TTGTTCCAACTCAAAAGCTA+AGG | 0.572666 | 7.1:-7781026 | None:intergenic |
| AAAGGTCCGAAAACTGTTGA+CGG | 0.573588 | 7.1:-7780586 | None:intergenic |
| ACCAAACTCTGGTTCTAACT+CGG | 0.577387 | 7.1:+7779614 | MS.gene09808:CDS |
| ACTCCTTTATCTCCATCTTG+AGG | 0.578972 | 7.1:-7781579 | None:intergenic |
| GCAGAATAAAATCACTGAAG+AGG | 0.581197 | 7.1:+7781606 | MS.gene09808:CDS |
| TTTCCTCACAAGTTCCTCCA+AGG | 0.584609 | 7.1:-7781068 | None:intergenic |
| CAGTTGAAGACACCAAACTC+TGG | 0.589837 | 7.1:+7779603 | MS.gene09808:CDS |
| CTCAGGATCGAGATCGTGCA+TGG | 0.590550 | 7.1:+7780651 | MS.gene09808:CDS |
| TCAGGCTGCAAATTCAGAGT+TGG | 0.590572 | 7.1:+7781756 | MS.gene09808:CDS |
| TTAGAAGAAGCGGACTAGCA+AGG | 0.593878 | 7.1:+7780406 | MS.gene09808:intron |
| TAGCTATGTAATGGAAGAAG+CGG | 0.596332 | 7.1:+7781684 | MS.gene09808:CDS |
| TTGAGTCGGTTGAAACAGCA+AGG | 0.601134 | 7.1:+7781632 | MS.gene09808:CDS |
| AGAGCTAAAAGCAAGCCTGA+TGG | 0.601156 | 7.1:+7781360 | MS.gene09808:CDS |
| GTGCTTCTTCGGAAGCGGAA+AGG | 0.601435 | 7.1:-7780604 | None:intergenic |
| AGAAGATCTGAAGAGTGCTA+AGG | 0.601647 | 7.1:+7780463 | MS.gene09808:CDS |
| TAAGGATCAACTTAACTCAT+CGG | 0.603512 | 7.1:+7780481 | MS.gene09808:CDS |
| GCATCTATACTTTCTACCAC+CGG | 0.615034 | 7.1:+7781841 | MS.gene09808:CDS |
| TGCATGGCAATCTGAACTTG+AGG | 0.624261 | 7.1:+7780667 | MS.gene09808:CDS |
| AGAAGATTGGAGTGTTGTGG+AGG | 0.624386 | 7.1:+7782001 | MS.gene09808:CDS |
| GTTTGTCGGCGGAGAATGAG+GGG | 0.630308 | 7.1:+7781404 | MS.gene09808:CDS |
| TTATGCAGACACCAAAAGCA+AGG | 0.637953 | 7.1:+7778936 | None:intergenic |
| TGAAAGTTCAGTCTGATCAG+TGG | 0.639619 | 7.1:+7781797 | MS.gene09808:CDS |
| TCAATTGCTGAGTTTGTCGG+CGG | 0.644952 | 7.1:+7781393 | MS.gene09808:CDS |
| GTGGAGACACTCCAATCGGA+TGG | 0.646462 | 7.1:+7780977 | MS.gene09808:CDS |
| TGATCAGTGGAGAAAAGCAG+CGG | 0.646992 | 7.1:+7781810 | MS.gene09808:CDS |
| ATCACACAGTCCAATATCTG+AGG | 0.647969 | 7.1:+7779707 | MS.gene09808:CDS |
| AATCCTTGGAGGAACTTGTG+AGG | 0.648483 | 7.1:+7781065 | MS.gene09808:CDS |
| TCAGATTCAGGACTTGAGGA+TGG | 0.651660 | 7.1:+7780826 | MS.gene09808:CDS |
| TCAGTGGAGAAAAGCAGCGG+AGG | 0.652899 | 7.1:+7781813 | MS.gene09808:CDS |
| TGAAGAAGATTGGAGTGTTG+TGG | 0.655720 | 7.1:+7781998 | MS.gene09808:CDS |
| GAAGACAAAAGTTCAAGAGG+AGG | 0.660033 | 7.1:+7780511 | MS.gene09808:CDS |
| GGATAAAAGTAACAGAAGAG+TGG | 0.662477 | 7.1:+7781705 | MS.gene09808:CDS |
| TGCCGAGATAAGATACCAAG+AGG | 0.662730 | 7.1:+7781213 | MS.gene09808:CDS |
| ATGCTCCAGAAATGTCCCAA+AGG | 0.664123 | 7.1:+7779547 | MS.gene09808:CDS |
| TGAAAAGCGATCTACTGACA+GGG | 0.672889 | 7.1:+7781444 | MS.gene09808:CDS |
| GTCCGAAAGTAAACGAACGC+AGG | 0.685794 | 7.1:+7779682 | MS.gene09808:CDS |
| GGAAACAGTAAATAAGACAG+TGG | 0.686379 | 7.1:+7780958 | MS.gene09808:CDS |
| AGATTTGGCAGAGATAAGCG+CGG | 0.695807 | 7.1:-7781158 | None:intergenic |
| TGAGTCGGTTGAAACAGCAA+GGG | 0.701089 | 7.1:+7781633 | MS.gene09808:CDS |
| GAGAGAGGCTGAATTATACG+AGG | 0.729149 | 7.1:+7781309 | MS.gene09808:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATTAATCAATTAAGTT+GGG | - | chr7.1:7779880-7779899 | None:intergenic | 10.0% |
| !!! | GATGAATATTAAAAATATTT+TGG | - | chr7.1:7780338-7780357 | None:intergenic | 10.0% |
| !!! | TCGTAAATTTTTTTTTTTTA+TGG | + | chr7.1:7780260-7780279 | MS.gene09808:intron | 10.0% |
| !! | AAATATCAAATATAAGCAAA+TGG | - | chr7.1:7780039-7780058 | None:intergenic | 15.0% |
| !! | ATTTGTTTATTTATGCTAAT+TGG | + | chr7.1:7779505-7779524 | MS.gene09808:intron | 15.0% |
| !! | CATAAATTAATCAATTAAGT+TGG | - | chr7.1:7779881-7779900 | None:intergenic | 15.0% |
| !!! | GATTAATTTATGAGTATTTT+TGG | + | chr7.1:7779889-7779908 | MS.gene09808:intron | 15.0% |
| !! | AAGAGATAATTATTATAACG+AGG | - | chr7.1:7779857-7779876 | None:intergenic | 20.0% |
| !! | ACTAAGAGAAGTTTATTTAA+AGG | - | chr7.1:7779236-7779255 | None:intergenic | 20.0% |
| !! | ACTTGTATAATGTATATGAA+TGG | + | chr7.1:7779374-7779393 | MS.gene09808:intron | 20.0% |
| !! | AGAGATAATTATTATAACGA+GGG | - | chr7.1:7779856-7779875 | None:intergenic | 20.0% |
| !! | AGTAAATGAAACAAAAACAT+TGG | - | chr7.1:7779328-7779347 | None:intergenic | 20.0% |
| !! | ATAATAATAATTGAGTTCAG+AGG | - | chr7.1:7779748-7779767 | None:intergenic | 20.0% |
| !! | ATCTTGAATTCATGTAAAAA+CGG | + | chr7.1:7779810-7779829 | MS.gene09808:intron | 20.0% |
| !! | CAATTTATGTATTTCATTCA+TGG | - | chr7.1:7780738-7780757 | None:intergenic | 20.0% |
| !! | TAATAATAATTGAGTTCAGA+GGG | - | chr7.1:7779747-7779766 | None:intergenic | 20.0% |
| !! | TGGAATAATAACATTAAATG+TGG | + | chr7.1:7779909-7779928 | MS.gene09808:intron | 20.0% |
| !! | TTTGTTTCATTTACTTAAGT+TGG | + | chr7.1:7779333-7779352 | MS.gene09808:intron | 20.0% |
| !!! | ATGTTTTTGTTTTTCTTCTT+TGG | - | chr7.1:7781976-7781995 | None:intergenic | 20.0% |
| ! | AACTTTCAATCTCCTTAATT+CGG | - | chr7.1:7781785-7781804 | None:intergenic | 25.0% |
| ! | AGTATCTATCAATATCATCA+AGG | - | chr7.1:7780204-7780223 | None:intergenic | 25.0% |
| ! | GAGATAATTATTATAACGAG+GGG | - | chr7.1:7779855-7779874 | None:intergenic | 25.0% |
| ! | GATAGATACTTATTGTTTAG+TGG | + | chr7.1:7780214-7780233 | MS.gene09808:intron | 25.0% |
| ! | TATGGAAAAACTAAGAAATG+AGG | + | chr7.1:7780871-7780890 | MS.gene09808:CDS | 25.0% |
| ! | TATTTGAGTCCAACAAATTT+AGG | + | chr7.1:7780054-7780073 | MS.gene09808:intron | 25.0% |
| ! | TGAAATTGTAAAGTTAACTG+TGG | + | chr7.1:7779108-7779127 | MS.gene09808:intron | 25.0% |
| ! | TGTCAAAACAAATTTGTGAA+GGG | + | chr7.1:7779178-7779197 | MS.gene09808:intron | 25.0% |
| ! | TTGTCAAAACAAATTTGTGA+AGG | + | chr7.1:7779177-7779196 | MS.gene09808:intron | 25.0% |
| !! | AAACTTCTCTTAGTTCTTAT+TGG | + | chr7.1:7779242-7779261 | MS.gene09808:intron | 25.0% |
| !! | AACTTCTCTTAGTTCTTATT+GGG | + | chr7.1:7779243-7779262 | MS.gene09808:intron | 25.0% |
| !! | TATTTATGCTAATTGGCTTA+TGG | + | chr7.1:7779512-7779531 | MS.gene09808:intron | 25.0% |
| !! | TCTTTTGGTATCTTTCTTAT+GGG | - | chr7.1:7779657-7779676 | None:intergenic | 25.0% |
| !! | TTATAATGTGTCTCTTTTTC+TGG | + | chr7.1:7780381-7780400 | MS.gene09808:intron | 25.0% |
| AAAAACATGCTGAAGAAGAT+TGG | + | chr7.1:7781988-7782007 | MS.gene09808:CDS | 30.0% | |
| AAAATCTCAAGCAAAATCCT+TGG | + | chr7.1:7781051-7781070 | MS.gene09808:CDS | 30.0% | |
| AGAACTCAGTAAAATATCTC+AGG | + | chr7.1:7780634-7780653 | MS.gene09808:CDS | 30.0% | |
| AGGAAAATGAGGAGATAAAT+GGG | + | chr7.1:7781128-7781147 | MS.gene09808:CDS | 30.0% | |
| GAAACAATGGAAAATGTGTA+GGG | + | chr7.1:7781863-7781882 | MS.gene09808:CDS | 30.0% | |
| GACAAAACTTAGCTATGTAA+TGG | + | chr7.1:7781675-7781694 | MS.gene09808:CDS | 30.0% | |
| GTTTCAAATACCTCAGATAT+TGG | - | chr7.1:7779720-7779739 | None:intergenic | 30.0% | |
| TAAGGATCAACTTAACTCAT+CGG | + | chr7.1:7780481-7780500 | MS.gene09808:CDS | 30.0% | |
| TCATCTGTGTCTTCTAAATA+AGG | - | chr7.1:7781946-7781965 | None:intergenic | 30.0% | |
| ! | CTTTTGCTAATAATGTGGAT+GGG | + | chr7.1:7780133-7780152 | MS.gene09808:intron | 30.0% |
| ! | CTTTTGGTATCTTTCTTATG+GGG | - | chr7.1:7779656-7779675 | None:intergenic | 30.0% |
| ! | GTCTTTTGGTATCTTTCTTA+TGG | - | chr7.1:7779658-7779677 | None:intergenic | 30.0% |
| ! | GTTGTTAGTCTGAGAAAATT+CGG | - | chr7.1:7780789-7780808 | None:intergenic | 30.0% |
| ! | TACAATCTTTACCTTGCTTT+TGG | - | chr7.1:7778950-7778969 | None:intergenic | 30.0% |
| ! | TACACATTTTCCATTGTTTC+CGG | - | chr7.1:7781863-7781882 | None:intergenic | 30.0% |
| ! | TCTTTTGCTAATAATGTGGA+TGG | + | chr7.1:7780132-7780151 | MS.gene09808:intron | 30.0% |
| !! | AAAAGAGTGCCTAAATTTGT+TGG | - | chr7.1:7780066-7780085 | None:intergenic | 30.0% |
| !!! | TTCAGTTGCTTTTTTCAACT+CGG | - | chr7.1:7781548-7781567 | None:intergenic | 30.0% |
| ACTTGACATTTAACCCACTT+GGG | + | chr7.1:7779939-7779958 | MS.gene09808:intron | 35.0% | |
| AGAAAACAGTATCCTCAAGA+TGG | + | chr7.1:7781567-7781586 | MS.gene09808:CDS | 35.0% | |
| AGTTAGGAGAATCAATCATC+CGG | - | chr7.1:7779441-7779460 | None:intergenic | 35.0% | |
| ATCTCAATTGCTGAGTTTGT+CGG | + | chr7.1:7781390-7781409 | MS.gene09808:CDS | 35.0% | |
| ATGGAAGACAAAAGTTCAAG+AGG | + | chr7.1:7780508-7780527 | MS.gene09808:CDS | 35.0% | |
| CAAATATAAGCAAATGGCAC+CGG | - | chr7.1:7780033-7780052 | None:intergenic | 35.0% | |
| CAGGAAAATGAGGAGATAAA+TGG | + | chr7.1:7781127-7781146 | MS.gene09808:CDS | 35.0% | |
| CTGAATTATACGAGGAATTG+AGG | + | chr7.1:7781317-7781336 | MS.gene09808:CDS | 35.0% | |
| GAATTGAGGAAAACTATAGC+TGG | + | chr7.1:7781331-7781350 | MS.gene09808:CDS | 35.0% | |
| GCAGAATAAAATCACTGAAG+AGG | + | chr7.1:7781606-7781625 | MS.gene09808:CDS | 35.0% | |
| GGAAAATGTGTAGGGAAAAA+CGG | + | chr7.1:7781871-7781890 | MS.gene09808:CDS | 35.0% | |
| GGAAACAATGGAAAATGTGT+AGG | + | chr7.1:7781862-7781881 | MS.gene09808:CDS | 35.0% | |
| GGAAACAGTAAATAAGACAG+TGG | + | chr7.1:7780958-7780977 | MS.gene09808:CDS | 35.0% | |
| GGATAAAAGTAACAGAAGAG+TGG | + | chr7.1:7781705-7781724 | MS.gene09808:CDS | 35.0% | |
| TACTTGACATTTAACCCACT+TGG | + | chr7.1:7779938-7779957 | MS.gene09808:intron | 35.0% | |
| TAGTGAAGCTATCTCTGTTA+TGG | + | chr7.1:7780853-7780872 | MS.gene09808:CDS | 35.0% | |
| TATATGAATGGCGCTGTAAA+CGG | + | chr7.1:7779386-7779405 | MS.gene09808:intron | 35.0% | |
| TATCCTCAAGATGGAGATAA+AGG | + | chr7.1:7781576-7781595 | MS.gene09808:CDS | 35.0% | |
| TGCTGCAGAACTCAAAAAAA+TGG | + | chr7.1:7781477-7781496 | MS.gene09808:CDS | 35.0% | |
| TGGCAAAATGCAAATGCAAT+TGG | + | chr7.1:7780937-7780956 | MS.gene09808:CDS | 35.0% | |
| TTCCTCTTGGTATCTTATCT+CGG | - | chr7.1:7781218-7781237 | None:intergenic | 35.0% | |
| TTGATCACTTCAGTGTGTTA+TGG | + | chr7.1:7779460-7779479 | MS.gene09808:intron | 35.0% | |
| TTGTTCCAACTCAAAAGCTA+AGG | - | chr7.1:7781029-7781048 | None:intergenic | 35.0% | |
| ! | ACTGATTCAACCAATGGAAA+GGG | + | chr7.1:7781097-7781116 | MS.gene09808:CDS | 35.0% |
| ! | ATTGAGATTCCTTTTCCATC+AGG | - | chr7.1:7781378-7781397 | None:intergenic | 35.0% |
| ! | GCACTCTTTTGCTAATAATG+TGG | + | chr7.1:7780128-7780147 | MS.gene09808:intron | 35.0% |
| ! | TAGCTATGTAATGGAAGAAG+CGG | + | chr7.1:7781684-7781703 | MS.gene09808:CDS | 35.0% |
| ! | TATTATAACGAGGGGCATAT+TGG | - | chr7.1:7779847-7779866 | None:intergenic | 35.0% |
| !! | AGATCGCTTTTCATTGATAC+TGG | - | chr7.1:7781437-7781456 | None:intergenic | 35.0% |
| !! | TACTTCTAAAGCTCGTGATT+CGG | - | chr7.1:7780915-7780934 | None:intergenic | 35.0% |
| !! | TCACGAGCTTTAGAAGTAAT+TGG | + | chr7.1:7780917-7780936 | MS.gene09808:CDS | 35.0% |
| !! | TTGCTTTTATACCATCCGAT+TGG | - | chr7.1:7780991-7781010 | None:intergenic | 35.0% |
| !!! | TGCTGATTTTAGTCATGAGA+TGG | - | chr7.1:7779017-7779036 | None:intergenic | 35.0% |
| !!! | TTTTCTGGCTTTAGAAGAAG+CGG | + | chr7.1:7780396-7780415 | MS.gene09808:intron | 35.0% |
| AAAAGCAAGCCTGATGGAAA+AGG | + | chr7.1:7781366-7781385 | MS.gene09808:CDS | 40.0% | |
| AAAGGTCCGAAAACTGTTGA+CGG | - | chr7.1:7780589-7780608 | None:intergenic | 40.0% | |
| AACCTGCGTTCGTTTACTTT+CGG | - | chr7.1:7779687-7779706 | None:intergenic | 40.0% | |
| AACTTAACTCATCGGAGTCA+TGG | + | chr7.1:7780489-7780508 | MS.gene09808:CDS | 40.0% | |
| ACTCCTTTATCTCCATCTTG+AGG | - | chr7.1:7781582-7781601 | None:intergenic | 40.0% | |
| AGAGCAGTTGAAATCTGCAT+TGG | + | chr7.1:7781186-7781205 | MS.gene09808:CDS | 40.0% | |
| ATCACACAGTCCAATATCTG+AGG | + | chr7.1:7779707-7779726 | MS.gene09808:CDS | 40.0% | |
| ATCTCAAGCAAAATCCTTGG+AGG | + | chr7.1:7781054-7781073 | MS.gene09808:CDS | 40.0% | |
| ATGAAAAGCGATCTACTGAC+AGG | + | chr7.1:7781443-7781462 | MS.gene09808:CDS | 40.0% | |
| ATGAGATGGCACAAAGAGAA+TGG | - | chr7.1:7779003-7779022 | None:intergenic | 40.0% | |
| CAACTGCTCTACTTCAGATT+TGG | - | chr7.1:7781176-7781195 | None:intergenic | 40.0% | |
| CAAGATCAAGTATGCTTGTG+TGG | + | chr7.1:7779301-7779320 | MS.gene09808:intron | 40.0% | |
| CAAGATGGAGATAAAGGAGT+TGG | + | chr7.1:7781582-7781601 | MS.gene09808:CDS | 40.0% | |
| CACACAAGCATACTTGATCT+TGG | - | chr7.1:7779303-7779322 | None:intergenic | 40.0% | |
| CACACTGAAGTGATCAAGTT+AGG | - | chr7.1:7779457-7779476 | None:intergenic | 40.0% | |
| CACTTCAGTGTGTTATGGTT+TGG | + | chr7.1:7779465-7779484 | MS.gene09808:intron | 40.0% | |
| GAAGACAAAAGTTCAAGAGG+AGG | + | chr7.1:7780511-7780530 | MS.gene09808:CDS | 40.0% | |
| GCATCTATACTTTCTACCAC+CGG | + | chr7.1:7781841-7781860 | MS.gene09808:CDS | 40.0% | |
| GGTATCTTTCTTATGGGGTT+TGG | - | chr7.1:7779651-7779670 | None:intergenic | 40.0% | |
| TGAAAAGCGATCTACTGACA+GGG | + | chr7.1:7781444-7781463 | MS.gene09808:CDS | 40.0% | |
| TGAAAGTTCAGTCTGATCAG+TGG | + | chr7.1:7781797-7781816 | MS.gene09808:CDS | 40.0% | |
| TGTAGCAGGTGATTTCCTTT+GGG | - | chr7.1:7779565-7779584 | None:intergenic | 40.0% | |
| TTCTAATCTGCAATGTGCTC+TGG | - | chr7.1:7781246-7781265 | None:intergenic | 40.0% | |
| TTCTTGAAGTCGTGCTTCTT+CGG | - | chr7.1:7780618-7780637 | None:intergenic | 40.0% | |
| TTGTAGCAGGTGATTTCCTT+TGG | - | chr7.1:7779566-7779585 | None:intergenic | 40.0% | |
| ! | ACATTTTCCATTGTTTCCGG+TGG | - | chr7.1:7781860-7781879 | None:intergenic | 40.0% |
| ! | ACTTTCGGACTCATGTCTTT+TGG | - | chr7.1:7779672-7779691 | None:intergenic | 40.0% |
| ! | AGAATCCCGTCAACAGTTTT+CGG | + | chr7.1:7780580-7780599 | MS.gene09808:CDS | 40.0% |
| ! | ATTCTTCCAGCTCTTTTGAC+AGG | - | chr7.1:7780565-7780584 | None:intergenic | 40.0% |
| ! | GGTTAGTTAGACTTGCCTTA+TGG | + | chr7.1:7780154-7780173 | MS.gene09808:intron | 40.0% |
| ! | TATGCTAATTGGCTTATGGC+TGG | + | chr7.1:7779516-7779535 | MS.gene09808:intron | 40.0% |
| ! | TTCTTCCAGCTCTTTTGACA+GGG | - | chr7.1:7780564-7780583 | None:intergenic | 40.0% |
| !! | ACCAAACTCTGGTTCTAACT+CGG | + | chr7.1:7779614-7779633 | MS.gene09808:CDS | 40.0% |
| !! | AGAAGATCTGAAGAGTGCTA+AGG | + | chr7.1:7780463-7780482 | MS.gene09808:CDS | 40.0% |
| !! | CAAGTCCTTAGCTTTTGAGT+TGG | + | chr7.1:7781021-7781040 | MS.gene09808:CDS | 40.0% |
| !! | CACTGATTCAACCAATGGAA+AGG | + | chr7.1:7781096-7781115 | MS.gene09808:CDS | 40.0% |
| !! | CTTGACACTGATTCAACCAA+TGG | + | chr7.1:7781091-7781110 | MS.gene09808:CDS | 40.0% |
| !! | GATTTCCTTTGGGACATTTC+TGG | - | chr7.1:7779555-7779574 | None:intergenic | 40.0% |
| !! | TAGAAGTGCTTACGAACAAC+TGG | + | chr7.1:7781261-7781280 | MS.gene09808:CDS | 40.0% |
| !! | TGAAGAAGATTGGAGTGTTG+TGG | + | chr7.1:7781998-7782017 | MS.gene09808:CDS | 40.0% |
| !!! | AATCCATTGAGTGCTGCTTT+TGG | - | chr7.1:7780697-7780716 | None:intergenic | 40.0% |
| !!! | TGGATACTGATTTTGCAGAG+TGG | + | chr7.1:7781497-7781516 | MS.gene09808:CDS | 40.0% |
| AAGGTCCGAAAACTGTTGAC+GGG | - | chr7.1:7780588-7780607 | None:intergenic | 45.0% | |
| AATCCTTGGAGGAACTTGTG+AGG | + | chr7.1:7781065-7781084 | MS.gene09808:CDS | 45.0% | |
| AGAGCTAAAAGCAAGCCTGA+TGG | + | chr7.1:7781360-7781379 | MS.gene09808:CDS | 45.0% | |
| AGATTTGGCAGAGATAAGCG+CGG | - | chr7.1:7781161-7781180 | None:intergenic | 45.0% | |
| ATCAGAATCCAGTGAGAGAG+AGG | + | chr7.1:7781294-7781313 | MS.gene09808:CDS | 45.0% | |
| ATGCTCAGATTCAGGACTTG+AGG | + | chr7.1:7780822-7780841 | MS.gene09808:CDS | 45.0% | |
| ATGCTCCAGAAATGTCCCAA+AGG | + | chr7.1:7779547-7779566 | MS.gene09808:CDS | 45.0% | |
| CAATGGAAAGGGACTTTCTC+AGG | + | chr7.1:7781108-7781127 | MS.gene09808:CDS | 45.0% | |
| CAGAGTTGGAAGCCGAATTA+AGG | + | chr7.1:7781770-7781789 | MS.gene09808:CDS | 45.0% | |
| CAGTTGAAGACACCAAACTC+TGG | + | chr7.1:7779603-7779622 | MS.gene09808:CDS | 45.0% | |
| CTGAGAAAGTCCCTTTCCAT+TGG | - | chr7.1:7781110-7781129 | None:intergenic | 45.0% | |
| CTTTCTACCACCGGAAACAA+TGG | + | chr7.1:7781850-7781869 | MS.gene09808:CDS | 45.0% | |
| GACATTTAACCCACTTGGGT+TGG | + | chr7.1:7779943-7779962 | MS.gene09808:intron | 45.0% | |
| GACTAGCAAGGTTCAGGAAT+TGG | + | chr7.1:7780418-7780437 | MS.gene09808:CDS | 45.0% | |
| GAGAGAGGCTGAATTATACG+AGG | + | chr7.1:7781309-7781328 | MS.gene09808:CDS | 45.0% | |
| GGGACTTTCTCAGGAAAATG+AGG | + | chr7.1:7781117-7781136 | MS.gene09808:CDS | 45.0% | |
| GTCTGATCATGCTCAGATTC+AGG | + | chr7.1:7780814-7780833 | MS.gene09808:CDS | 45.0% | |
| TAATTCAGCCTCTCTCTCAC+TGG | - | chr7.1:7781305-7781324 | None:intergenic | 45.0% | |
| TAGCGTTGCATAACTTCCTC+CGG | + | chr7.1:7779419-7779438 | MS.gene09808:intron | 45.0% | |
| TAGGAGAATCAATCATCCGG+AGG | - | chr7.1:7779438-7779457 | None:intergenic | 45.0% | |
| TCAATTGCTGAGTTTGTCGG+CGG | + | chr7.1:7781393-7781412 | MS.gene09808:CDS | 45.0% | |
| TCAGATTCAGGACTTGAGGA+TGG | + | chr7.1:7780826-7780845 | MS.gene09808:CDS | 45.0% | |
| TCAGGCTGCAAATTCAGAGT+TGG | + | chr7.1:7781756-7781775 | MS.gene09808:CDS | 45.0% | |
| TGAGTCGGTTGAAACAGCAA+GGG | + | chr7.1:7781633-7781652 | MS.gene09808:CDS | 45.0% | |
| TGATCAGTGGAGAAAAGCAG+CGG | + | chr7.1:7781810-7781829 | MS.gene09808:CDS | 45.0% | |
| TGCATGGCAATCTGAACTTG+AGG | + | chr7.1:7780667-7780686 | MS.gene09808:CDS | 45.0% | |
| TGCCGAGATAAGATACCAAG+AGG | + | chr7.1:7781213-7781232 | MS.gene09808:CDS | 45.0% | |
| TGTCCAAAAGCAGCACTCAA+TGG | + | chr7.1:7780691-7780710 | MS.gene09808:CDS | 45.0% | |
| TTGAGTCGGTTGAAACAGCA+AGG | + | chr7.1:7781632-7781651 | MS.gene09808:CDS | 45.0% | |
| TTTCCTCACAAGTTCCTCCA+AGG | - | chr7.1:7781071-7781090 | None:intergenic | 45.0% | |
| ! | CTCAATGGATTCATCTGCTC+TGG | + | chr7.1:7780706-7780725 | MS.gene09808:CDS | 45.0% |
| ! | TGCTCTGGATGTATTCCTCT+TGG | - | chr7.1:7781231-7781250 | None:intergenic | 45.0% |
| !! | AGAAGATTGGAGTGTTGTGG+AGG | + | chr7.1:7782001-7782020 | MS.gene09808:CDS | 45.0% |
| !! | CAGAGTTTGGTGTCTTCAAC+TGG | - | chr7.1:7779605-7779624 | None:intergenic | 45.0% |
| !! | CTTTCTTATGGGGTTTGGTG+AGG | - | chr7.1:7779646-7779665 | None:intergenic | 45.0% |
| !! | TTAGAAGAAGCGGACTAGCA+AGG | + | chr7.1:7780406-7780425 | MS.gene09808:intron | 45.0% |
| !! | TTGGGACATTTCTGGAGCAT+TGG | - | chr7.1:7779547-7779566 | None:intergenic | 45.0% |
| AAGTCGTGCTTCTTCGGAAG+CGG | - | chr7.1:7780612-7780631 | None:intergenic | 50.0% | |
| ACTGTCCCTGTCAAAAGAGC+TGG | + | chr7.1:7780556-7780575 | MS.gene09808:CDS | 50.0% | |
| AGTTTGTCGGCGGAGAATGA+GGG | + | chr7.1:7781403-7781422 | MS.gene09808:CDS | 50.0% | |
| CACTGAAGAGGCTGTTGAGT+CGG | + | chr7.1:7781618-7781637 | MS.gene09808:CDS | 50.0% | |
| CTGAGCAGCATCTAGCTGTT+CGG | - | chr7.1:7781740-7781759 | None:intergenic | 50.0% | |
| CTTGCCTTATGGAGCTATCG+CGG | + | chr7.1:7780165-7780184 | MS.gene09808:intron | 50.0% | |
| GAATCGAACCTGAGACCTTG+CGG | - | chr7.1:7780007-7780026 | None:intergenic | 50.0% | |
| GACAGTGGAGACACTCCAAT+CGG | + | chr7.1:7780973-7780992 | MS.gene09808:CDS | 50.0% | |
| GCCGAGTTAGAACCAGAGTT+TGG | - | chr7.1:7779618-7779637 | None:intergenic | 50.0% | |
| GTCCGAAAGTAAACGAACGC+AGG | + | chr7.1:7779682-7779701 | MS.gene09808:CDS | 50.0% | |
| GTCTCAGGTTCGATTCTCTC+CGG | + | chr7.1:7780011-7780030 | MS.gene09808:intron | 50.0% | |
| TTAGCCGCGATAGCTCCATA+AGG | - | chr7.1:7780172-7780191 | None:intergenic | 50.0% | |
| !! | GTGGTATTGGCTTGGGTCTT+GGG | + | chr7.1:7779970-7779989 | MS.gene09808:intron | 50.0% |
| !! | TCTTATGGGGTTTGGTGAGG+AGG | - | chr7.1:7779643-7779662 | None:intergenic | 50.0% |
| AACAGCAAGGGCTGCAGAGA+AGG | + | chr7.1:7781645-7781664 | MS.gene09808:CDS | 55.0% | |
| AGACCCAAGCCAATACCACC+AGG | - | chr7.1:7779969-7779988 | None:intergenic | 55.0% | |
| CGAACAGCTAGATGCTGCTC+AGG | + | chr7.1:7781738-7781757 | MS.gene09808:CDS | 55.0% | |
| CTCAGGATCGAGATCGTGCA+TGG | + | chr7.1:7780651-7780670 | MS.gene09808:CDS | 55.0% | |
| GAGTTTGTCGGCGGAGAATG+AGG | + | chr7.1:7781402-7781421 | MS.gene09808:CDS | 55.0% | |
| GCAGTTCGAGGAGTTGTAGC+AGG | - | chr7.1:7779579-7779598 | None:intergenic | 55.0% | |
| GTGCTTCTTCGGAAGCGGAA+AGG | - | chr7.1:7780607-7780626 | None:intergenic | 55.0% | |
| GTGGAGACACTCCAATCGGA+TGG | + | chr7.1:7780977-7780996 | MS.gene09808:CDS | 55.0% | |
| GTTTGTCGGCGGAGAATGAG+GGG | + | chr7.1:7781404-7781423 | MS.gene09808:CDS | 55.0% | |
| TCAGTGGAGAAAAGCAGCGG+AGG | + | chr7.1:7781813-7781832 | MS.gene09808:CDS | 55.0% | |
| TTCAACTGGCGAGCAGTTCG+AGG | - | chr7.1:7779591-7779610 | None:intergenic | 55.0% | |
| !! | GAAGCGGACTAGCAAGGTTC+AGG | + | chr7.1:7780412-7780431 | MS.gene09808:CDS | 55.0% |
| !! | GGTGGTATTGGCTTGGGTCT+TGG | + | chr7.1:7779969-7779988 | MS.gene09808:intron | 55.0% |
| !! | TATGGGGTTTGGTGAGGAGG+AGG | - | chr7.1:7779640-7779659 | None:intergenic | 55.0% |
| !! | TGGCCTGGTGGTATTGGCTT+GGG | + | chr7.1:7779963-7779982 | MS.gene09808:intron | 55.0% |
| !! | TTAACCCACTTGGGTTGGCC+TGG | + | chr7.1:7779948-7779967 | MS.gene09808:intron | 55.0% |
| !! | TTGGCCTGGTGGTATTGGCT+TGG | + | chr7.1:7779962-7779981 | MS.gene09808:intron | 55.0% |
| !! | TTGGGTTGGCCTGGTGGTAT+TGG | + | chr7.1:7779957-7779976 | MS.gene09808:intron | 55.0% |
| ACCACCAGGCCAACCCAAGT+GGG | - | chr7.1:7779955-7779974 | None:intergenic | 60.0% | |
| TACCACCAGGCCAACCCAAG+TGG | - | chr7.1:7779956-7779975 | None:intergenic | 60.0% | |
| TCGAACCTGAGACCTTGCGG+AGG | - | chr7.1:7780004-7780023 | None:intergenic | 60.0% | |
| GTGCTCCTCCGCAAGGTCTC+AGG | + | chr7.1:7779996-7780015 | MS.gene09808:intron | 65.0% | |
| ! | TGGGAGTGTGCTCCTCCGCA+AGG | + | chr7.1:7779989-7780008 | MS.gene09808:intron | 65.0% |
| !! | ACCCACTTGGGTTGGCCTGG+TGG | + | chr7.1:7779951-7779970 | MS.gene09808:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 7778938 | 7782038 | 7778938 | ID=MS.gene09808 |
| chr7.1 | mRNA | 7778938 | 7782038 | 7778938 | ID=MS.gene09808.t1;Parent=MS.gene09808 |
| chr7.1 | exon | 7778938 | 7778957 | 7778938 | ID=MS.gene09808.t1.exon1;Parent=MS.gene09808.t1 |
| chr7.1 | CDS | 7778938 | 7778957 | 7778938 | ID=cds.MS.gene09808.t1;Parent=MS.gene09808.t1 |
| chr7.1 | exon | 7779542 | 7779728 | 7779542 | ID=MS.gene09808.t1.exon2;Parent=MS.gene09808.t1 |
| chr7.1 | CDS | 7779542 | 7779728 | 7779542 | ID=cds.MS.gene09808.t1;Parent=MS.gene09808.t1 |
| chr7.1 | exon | 7780410 | 7782038 | 7780410 | ID=MS.gene09808.t1.exon3;Parent=MS.gene09808.t1 |
| chr7.1 | CDS | 7780410 | 7782038 | 7780410 | ID=cds.MS.gene09808.t1;Parent=MS.gene09808.t1 |
| Gene Sequence |
| Protein sequence |
