Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32263.t1 | XP_013445167.1 | 95 | 322 | 15 | 1 | 1 | 321 | 1 | 322 | 4.90E-154 | 553.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32263.t1 | P55197 | 36.2 | 188 | 104 | 4 | 129 | 307 | 25 | 205 | 3.7e-33 | 143.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32263.t1 | G7ZV42 | 95.0 | 322 | 15 | 1 | 1 | 321 | 1 | 322 | 3.5e-154 | 553.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32263.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene32263 | 0.808363 | 3.21E-50 | -1.69E-46 |
| MS.gene049622 | MS.gene32263 | 0.806487 | 8.03E-50 | -1.69E-46 |
| MS.gene04985 | MS.gene32263 | 0.81418 | 1.76E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene32263 | 0.869086 | 4.03E-66 | -1.69E-46 |
| MS.gene050297 | MS.gene32263 | 0.845184 | 4.76E-59 | -1.69E-46 |
| MS.gene050648 | MS.gene32263 | 0.816877 | 4.41E-52 | -1.69E-46 |
| MS.gene051263 | MS.gene32263 | 0.805956 | 1.04E-49 | -1.69E-46 |
| MS.gene051629 | MS.gene32263 | 0.808361 | 3.22E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene32263 | 0.829146 | 6.06E-55 | -1.69E-46 |
| MS.gene053416 | MS.gene32263 | 0.845928 | 2.99E-59 | -1.69E-46 |
| MS.gene053417 | MS.gene32263 | 0.845671 | 3.51E-59 | -1.69E-46 |
| MS.gene054551 | MS.gene32263 | 0.806464 | 8.12E-50 | -1.69E-46 |
| MS.gene055957 | MS.gene32263 | 0.827182 | 1.80E-54 | -1.69E-46 |
| MS.gene056041 | MS.gene32263 | 0.827817 | 1.27E-54 | -1.69E-46 |
| MS.gene056169 | MS.gene32263 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene056526 | MS.gene32263 | 0.84791 | 8.57E-60 | -1.69E-46 |
| MS.gene058197 | MS.gene32263 | 0.821115 | 4.79E-53 | -1.69E-46 |
| MS.gene058198 | MS.gene32263 | 0.822675 | 2.09E-53 | -1.69E-46 |
| MS.gene058818 | MS.gene32263 | 0.810586 | 1.07E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene32263 | 0.859722 | 3.40E-63 | -1.69E-46 |
| MS.gene060473 | MS.gene32263 | 0.852413 | 4.69E-61 | -1.69E-46 |
| MS.gene060565 | MS.gene32263 | 0.851134 | 1.08E-60 | -1.69E-46 |
| MS.gene06057 | MS.gene32263 | 0.864796 | 9.40E-65 | -1.69E-46 |
| MS.gene061099 | MS.gene32263 | 0.806615 | 7.55E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene32263 | 0.82966 | 4.55E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32263.t1 | MTR_8g042510 | 94.410 | 322 | 17 | 1 | 1 | 321 | 1 | 322 | 0.0 | 585 |
| MS.gene32263.t1 | MTR_7g021365 | 33.514 | 185 | 103 | 4 | 129 | 301 | 605 | 781 | 1.85e-21 | 95.5 |
| MS.gene32263.t1 | MTR_7g021365 | 33.690 | 187 | 100 | 5 | 129 | 301 | 605 | 781 | 2.36e-21 | 95.1 |
| MS.gene32263.t1 | MTR_7g117355 | 28.017 | 232 | 141 | 8 | 81 | 299 | 483 | 701 | 2.76e-16 | 80.1 |
| MS.gene32263.t1 | MTR_8g027725 | 28.977 | 176 | 110 | 6 | 129 | 299 | 521 | 686 | 2.48e-15 | 77.4 |
| MS.gene32263.t1 | MTR_8g027725 | 28.977 | 176 | 110 | 6 | 129 | 299 | 506 | 671 | 2.63e-15 | 77.0 |
| MS.gene32263.t1 | MTR_3g091310 | 28.977 | 176 | 110 | 6 | 129 | 299 | 632 | 797 | 1.20e-13 | 72.0 |
| MS.gene32263.t1 | MTR_3g091310 | 28.977 | 176 | 110 | 6 | 129 | 299 | 538 | 703 | 1.51e-13 | 72.0 |
| MS.gene32263.t1 | MTR_1g008230 | 30.508 | 177 | 106 | 7 | 129 | 299 | 602 | 767 | 2.11e-13 | 71.2 |
| MS.gene32263.t1 | MTR_1g008230 | 30.508 | 177 | 106 | 7 | 129 | 299 | 324 | 489 | 2.38e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32263.t1 | AT3G14740 | 47.077 | 325 | 137 | 4 | 21 | 319 | 25 | 340 | 2.09e-97 | 291 |
| MS.gene32263.t1 | AT3G14740 | 47.077 | 325 | 135 | 5 | 21 | 319 | 25 | 338 | 1.27e-95 | 287 |
| MS.gene32263.t1 | AT2G31650 | 35.912 | 181 | 102 | 5 | 129 | 301 | 612 | 786 | 5.50e-27 | 112 |
| MS.gene32263.t1 | AT1G05830 | 33.333 | 192 | 97 | 6 | 129 | 301 | 629 | 808 | 1.33e-25 | 107 |
| MS.gene32263.t1 | AT1G05830 | 33.333 | 192 | 97 | 6 | 129 | 301 | 629 | 808 | 1.33e-25 | 107 |
| MS.gene32263.t1 | AT1G05830 | 33.333 | 192 | 97 | 6 | 129 | 301 | 629 | 808 | 1.33e-25 | 107 |
| MS.gene32263.t1 | AT1G05830 | 33.333 | 192 | 97 | 6 | 129 | 301 | 629 | 808 | 1.33e-25 | 107 |
| MS.gene32263.t1 | AT3G61740 | 32.903 | 155 | 92 | 6 | 129 | 281 | 549 | 693 | 1.28e-15 | 78.2 |
| MS.gene32263.t1 | AT3G61740 | 32.903 | 155 | 92 | 6 | 129 | 281 | 549 | 693 | 1.42e-15 | 78.2 |
| MS.gene32263.t1 | AT5G53430 | 27.556 | 225 | 136 | 10 | 90 | 299 | 563 | 775 | 5.79e-14 | 73.2 |
| MS.gene32263.t1 | AT4G27910 | 30.899 | 178 | 104 | 10 | 129 | 299 | 595 | 760 | 5.39e-13 | 70.1 |
| MS.gene32263.t1 | AT1G77800 | 30.000 | 190 | 110 | 8 | 128 | 307 | 287 | 463 | 7.10e-11 | 63.9 |
| MS.gene32263.t1 | AT1G77800 | 30.000 | 190 | 110 | 8 | 128 | 307 | 287 | 463 | 8.41e-11 | 63.5 |
| MS.gene32263.t1 | AT1G77800 | 30.000 | 190 | 110 | 8 | 128 | 307 | 287 | 463 | 8.51e-11 | 63.5 |
| MS.gene32263.t1 | AT1G77800 | 30.000 | 190 | 110 | 8 | 128 | 307 | 287 | 463 | 8.64e-11 | 63.5 |
| MS.gene32263.t1 | AT1G77800 | 30.000 | 190 | 110 | 8 | 128 | 307 | 287 | 463 | 9.70e-11 | 63.5 |
Find 80 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCTTTGTATTGAGTATA+AGG | 0.260989 | 8.3:+48783734 | MS.gene32263:CDS |
| GTTCTTCCTGCTGTTGTTGC+TGG | 0.280025 | 8.3:-48782966 | None:intergenic |
| CGTCGGTTGGGATGTTGTTT+TGG | 0.298059 | 8.3:-48783149 | None:intergenic |
| CTGCGACGGCTGTAACTTAA+TGG | 0.299220 | 8.3:+48783341 | MS.gene32263:CDS |
| TCAATCCCTTCTCTCCCTTC+TGG | 0.311163 | 8.3:-48783582 | None:intergenic |
| AAAGGTGCTACTGTTGTTGC+TGG | 0.352947 | 8.3:+48783765 | MS.gene32263:CDS |
| GGTGGTGAAGGTGGGGTTGA+AGG | 0.356961 | 8.3:-48783128 | None:intergenic |
| TTCTGAACAGAAGTGTGGTT+TGG | 0.363928 | 8.3:+48783683 | MS.gene32263:CDS |
| AATGAATCTTAGTCGTTTGT+TGG | 0.373084 | 8.3:-48782941 | None:intergenic |
| TCTGAACAGAAGTGTGGTTT+GGG | 0.382510 | 8.3:+48783684 | MS.gene32263:CDS |
| AGAAGGAAAGTGGGCCCATC+TGG | 0.393102 | 8.3:+48783521 | MS.gene32263:CDS |
| GTAAAACCCACTCTCAGATC+TGG | 0.421289 | 8.3:+48783793 | MS.gene32263:CDS |
| TGCAACGATCTTGTATTTCC+CGG | 0.423131 | 8.3:-48784198 | None:intergenic |
| GGACAGAGGGAGCAACGAAT+TGG | 0.436530 | 8.3:-48783468 | None:intergenic |
| ATGAATCTTAGTCGTTTGTT+GGG | 0.437202 | 8.3:-48782940 | None:intergenic |
| GTGAAGGTGGGGTTGAAGGG+CGG | 0.439165 | 8.3:-48783124 | None:intergenic |
| GGGGTGTTGATGATGAAGGT+GGG | 0.444598 | 8.3:-48783062 | None:intergenic |
| AAGGATTGTATTCGACGTTA+AGG | 0.446169 | 8.3:-48783188 | None:intergenic |
| AACAAACAACAGAAGGAAAG+TGG | 0.450254 | 8.3:+48783511 | MS.gene32263:CDS |
| GTGGTGAAGGTGGGGTTGAA+GGG | 0.451273 | 8.3:-48783127 | None:intergenic |
| TTGGTGCAGAACAAGGGATC+CGG | 0.451306 | 8.3:+48784179 | MS.gene32263:intron |
| TCACAAAACCAGTCACCCTC+TGG | 0.452678 | 8.3:-48783405 | None:intergenic |
| TATGTATGTGGGTGTTGTGA+TGG | 0.455586 | 8.3:+48783645 | MS.gene32263:CDS |
| ATGGTCCATGCTTCCTGCTA+TGG | 0.455725 | 8.3:+48783360 | MS.gene32263:CDS |
| CACCAGAGGGTTACCATAGC+AGG | 0.457643 | 8.3:-48783373 | None:intergenic |
| GTGGGTAGAGAATAAGTAGA+TGG | 0.471895 | 8.3:-48783087 | None:intergenic |
| GTGTTGTGATGGATGTGCTT+TGG | 0.478647 | 8.3:+48783656 | MS.gene32263:CDS |
| CTTTGTATTGAGTATAAGGA+AGG | 0.487792 | 8.3:+48783738 | MS.gene32263:CDS |
| AACAGATCCCAGAGGGTGAC+TGG | 0.488130 | 8.3:+48783397 | MS.gene32263:CDS |
| GGGGTGGGTGAGGGGAGAGA+AGG | 0.500025 | 8.3:-48783207 | None:intergenic |
| GAGTATAAGGAAGGGAAGAA+AGG | 0.503186 | 8.3:+48783747 | MS.gene32263:CDS |
| CATTTACCAGCAACAACAGC+AGG | 0.507729 | 8.3:+48782960 | MS.gene32263:CDS |
| TGAGTGGAACAGCGTCGGTT+GGG | 0.509178 | 8.3:-48783161 | None:intergenic |
| CTGGGATCTGTTTCACCAGA+GGG | 0.510639 | 8.3:-48783386 | None:intergenic |
| CTCCCTCTGTCCTACGAAAG+AGG | 0.511997 | 8.3:+48783479 | MS.gene32263:CDS |
| CCACTCTCAGATCTGGGAAA+AGG | 0.515813 | 8.3:+48783800 | MS.gene32263:CDS |
| CAAGTAAAGCACAAACCAGA+TGG | 0.515873 | 8.3:-48783536 | None:intergenic |
| CAGCATTAGCATCTGTGCTA+TGG | 0.516709 | 8.3:-48783302 | None:intergenic |
| TTGGAGAAGTGTTATGTATG+TGG | 0.523141 | 8.3:+48783633 | MS.gene32263:CDS |
| CAGCCGTCGCAGAAAACGAT+TGG | 0.534877 | 8.3:-48783330 | None:intergenic |
| TGGATCCAGAAGGGAGAGAA+GGG | 0.535229 | 8.3:+48783577 | MS.gene32263:CDS |
| TCGTTTGTTGGGAGGTAGGT+CGG | 0.538544 | 8.3:-48782929 | None:intergenic |
| ATGAGTGGAACAGCGTCGGT+TGG | 0.539722 | 8.3:-48783162 | None:intergenic |
| TAAAACCCACTCTCAGATCT+GGG | 0.541497 | 8.3:+48783794 | MS.gene32263:CDS |
| TTAGTCGTTTGTTGGGAGGT+AGG | 0.543612 | 8.3:-48782933 | None:intergenic |
| TGGAGAAGTGTTATGTATGT+GGG | 0.545181 | 8.3:+48783634 | MS.gene32263:CDS |
| TGGTGCAGAACAAGGGATCC+GGG | 0.545804 | 8.3:+48784180 | MS.gene32263:intron |
| TTCCTGCTATGGTAACCCTC+TGG | 0.549750 | 8.3:+48783371 | MS.gene32263:CDS |
| TCCCTCTTTCGTAGGACAGA+GGG | 0.550747 | 8.3:-48783481 | None:intergenic |
| TTCATTGCTCCCTCTTTCGT+AGG | 0.551522 | 8.3:-48783489 | None:intergenic |
| GTGGATCCAGAAGGGAGAGA+AGG | 0.554299 | 8.3:+48783576 | MS.gene32263:CDS |
| GCAATGAAACAAACAACAGA+AGG | 0.570962 | 8.3:+48783504 | MS.gene32263:CDS |
| TCCCTCTGTCCTACGAAAGA+GGG | 0.571477 | 8.3:+48783480 | MS.gene32263:CDS |
| GTTCTAAGATTCCACAGAAG+AGG | 0.573200 | 8.3:+48783607 | MS.gene32263:CDS |
| TTCTCCAACCACCTCTTCTG+TGG | 0.573745 | 8.3:-48783618 | None:intergenic |
| GATTCCACAGAAGAGGTGGT+TGG | 0.573938 | 8.3:+48783614 | MS.gene32263:CDS |
| TTGTGCTTTACTTGTGCCTG+AGG | 0.575107 | 8.3:+48783545 | MS.gene32263:CDS |
| CACAAAACCAGTCACCCTCT+GGG | 0.576262 | 8.3:-48783404 | None:intergenic |
| AATCTTAGTCGTTTGTTGGG+AGG | 0.581292 | 8.3:-48782937 | None:intergenic |
| GTAGAGAATAAGTAGATGGT+GGG | 0.581521 | 8.3:-48783083 | None:intergenic |
| CTAAGATTCCACAGAAGAGG+TGG | 0.584859 | 8.3:+48783610 | MS.gene32263:CDS |
| AAGTAAAGCACAAACCAGAT+GGG | 0.586279 | 8.3:-48783535 | None:intergenic |
| GGTAGAGAATAAGTAGATGG+TGG | 0.587962 | 8.3:-48783084 | None:intergenic |
| GGTTACCATAGCAGGAAGCA+TGG | 0.589460 | 8.3:-48783365 | None:intergenic |
| GGGTGTTGATGATGAAGGTG+GGG | 0.592237 | 8.3:-48783061 | None:intergenic |
| GTTTGTTCTGAACAGAAGTG+TGG | 0.601379 | 8.3:+48783678 | MS.gene32263:CDS |
| GTCGATGAGTGGAACAGCGT+CGG | 0.610138 | 8.3:-48783166 | None:intergenic |
| CTCCCTCTTTCGTAGGACAG+AGG | 0.612913 | 8.3:-48783482 | None:intergenic |
| TCTGGGATCTGTTTCACCAG+AGG | 0.613157 | 8.3:-48783387 | None:intergenic |
| TCGACGTTAAGGTCGATGAG+TGG | 0.616739 | 8.3:-48783177 | None:intergenic |
| GAGGGAGCAACGAATTGGAT+CGG | 0.621558 | 8.3:-48783463 | None:intergenic |
| AGAGAATAAGTAGATGGTGG+GGG | 0.628297 | 8.3:-48783081 | None:intergenic |
| ACAAACAACAGAAGGAAAGT+GGG | 0.628555 | 8.3:+48783512 | MS.gene32263:CDS |
| TTTGTATTGAGTATAAGGAA+GGG | 0.629492 | 8.3:+48783739 | MS.gene32263:CDS |
| TAGAGAATAAGTAGATGGTG+GGG | 0.637260 | 8.3:-48783082 | None:intergenic |
| GAATTTGAAGTCGATGACGA+TGG | 0.645921 | 8.3:+48783261 | MS.gene32263:CDS |
| TAGCACAGATGCTAATGCTG+AGG | 0.649193 | 8.3:+48783305 | MS.gene32263:CDS |
| CTGGTGAAACAGATCCCAGA+GGG | 0.654987 | 8.3:+48783390 | MS.gene32263:CDS |
| TATTACATGTGGAATCAAAG+AGG | 0.666947 | 8.3:+48783713 | MS.gene32263:CDS |
| TCTGGTGAAACAGATCCCAG+AGG | 0.763846 | 8.3:+48783389 | MS.gene32263:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAGTTTTTAATTAACAA+TGG | + | chr8.3:48783870-48783889 | MS.gene32263:intron | 10.0% |
| !! | TATTGTTAGTGAATTATTGA+AGG | + | chr8.3:48784100-48784119 | MS.gene32263:intron | 20.0% |
| !!! | CAAGTTTAATTTGATTTTGT+TGG | + | chr8.3:48784160-48784179 | MS.gene32263:intron | 20.0% |
| !!! | CTAAATTTTATCTAGTTTCA+AGG | + | chr8.3:48784010-48784029 | MS.gene32263:intron | 20.0% |
| !!! | TTTGAGATTGTTTTTTGATT+GGG | - | chr8.3:48783230-48783249 | None:intergenic | 20.0% |
| !!! | TTTTGAGATTGTTTTTTGAT+TGG | - | chr8.3:48783231-48783250 | None:intergenic | 20.0% |
| ! | CAAAAAACAATCTCAAAAAC+AGG | + | chr8.3:48783233-48783252 | MS.gene32263:CDS | 25.0% |
| ! | TTTGTATTGAGTATAAGGAA+GGG | + | chr8.3:48783739-48783758 | MS.gene32263:CDS | 25.0% |
| !!! | TTGAGATTGTTTTTTGATTG+GGG | - | chr8.3:48783229-48783248 | None:intergenic | 25.0% |
| AATGAATCTTAGTCGTTTGT+TGG | - | chr8.3:48782944-48782963 | None:intergenic | 30.0% | |
| ATGAATCTTAGTCGTTTGTT+GGG | - | chr8.3:48782943-48782962 | None:intergenic | 30.0% | |
| CTTTGTATTGAGTATAAGGA+AGG | + | chr8.3:48783738-48783757 | MS.gene32263:CDS | 30.0% | |
| GGATCTTTGTATTGAGTATA+AGG | + | chr8.3:48783734-48783753 | MS.gene32263:CDS | 30.0% | |
| TATTACATGTGGAATCAAAG+AGG | + | chr8.3:48783713-48783732 | MS.gene32263:CDS | 30.0% | |
| ! | TTGGGTTTTCATATTACATG+TGG | + | chr8.3:48783702-48783721 | MS.gene32263:CDS | 30.0% |
| AACAAACAACAGAAGGAAAG+TGG | + | chr8.3:48783511-48783530 | MS.gene32263:CDS | 35.0% | |
| AAGGATTGTATTCGACGTTA+AGG | - | chr8.3:48783191-48783210 | None:intergenic | 35.0% | |
| AAGTAAAGCACAAACCAGAT+GGG | - | chr8.3:48783538-48783557 | None:intergenic | 35.0% | |
| ACAAACAACAGAAGGAAAGT+GGG | + | chr8.3:48783512-48783531 | MS.gene32263:CDS | 35.0% | |
| GCAATGAAACAAACAACAGA+AGG | + | chr8.3:48783504-48783523 | MS.gene32263:CDS | 35.0% | |
| GTAGAGAATAAGTAGATGGT+GGG | - | chr8.3:48783086-48783105 | None:intergenic | 35.0% | |
| TAGAGAATAAGTAGATGGTG+GGG | - | chr8.3:48783085-48783104 | None:intergenic | 35.0% | |
| ! | ATTTTGTTGGTGCAGAACAA+GGG | + | chr8.3:48784173-48784192 | MS.gene32263:intron | 35.0% |
| !! | TGGAGAAGTGTTATGTATGT+GGG | + | chr8.3:48783634-48783653 | MS.gene32263:CDS | 35.0% |
| !! | TTGGAGAAGTGTTATGTATG+TGG | + | chr8.3:48783633-48783652 | MS.gene32263:CDS | 35.0% |
| !!! | AAGGGCGGTTATTCTTTTTT+TGG | - | chr8.3:48783112-48783131 | None:intergenic | 35.0% |
| !!! | ACGAGATTCTTTGCGTTTTT+TGG | - | chr8.3:48783022-48783041 | None:intergenic | 35.0% |
| !!! | AGATTCTTTGCGTTTTTTGG+TGG | - | chr8.3:48783019-48783038 | None:intergenic | 35.0% |
| !!! | AGATTGTTTTTTGATTGGGG+TGG | - | chr8.3:48783226-48783245 | None:intergenic | 35.0% |
| !!! | GAAGGCTAACTTTTTTTGCT+TGG | + | chr8.3:48784118-48784137 | MS.gene32263:intron | 35.0% |
| !!! | GATTCTTTGCGTTTTTTGGT+GGG | - | chr8.3:48783018-48783037 | None:intergenic | 35.0% |
| !!! | GATTGTTTTTTGATTGGGGT+GGG | - | chr8.3:48783225-48783244 | None:intergenic | 35.0% |
| !!! | GCGGTTATTCTTTTTTTGGT+GGG | - | chr8.3:48783108-48783127 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGTGGATCCAGAA+GGG | + | chr8.3:48783568-48783587 | MS.gene32263:CDS | 35.0% |
| CAAGTAAAGCACAAACCAGA+TGG | - | chr8.3:48783539-48783558 | None:intergenic | 40.0% | |
| GAGTATAAGGAAGGGAAGAA+AGG | + | chr8.3:48783747-48783766 | MS.gene32263:CDS | 40.0% | |
| GGTAGAGAATAAGTAGATGG+TGG | - | chr8.3:48783087-48783106 | None:intergenic | 40.0% | |
| GTGGGTAGAGAATAAGTAGA+TGG | - | chr8.3:48783090-48783109 | None:intergenic | 40.0% | |
| TAAAACCCACTCTCAGATCT+GGG | + | chr8.3:48783794-48783813 | MS.gene32263:CDS | 40.0% | |
| TGCAACGATCTTGTATTTCC+CGG | - | chr8.3:48784201-48784220 | None:intergenic | 40.0% | |
| ! | AATCTTAGTCGTTTGTTGGG+AGG | - | chr8.3:48782940-48782959 | None:intergenic | 40.0% |
| ! | AGAGAATAAGTAGATGGTGG+GGG | - | chr8.3:48783084-48783103 | None:intergenic | 40.0% |
| ! | GAATTTGAAGTCGATGACGA+TGG | + | chr8.3:48783261-48783280 | MS.gene32263:CDS | 40.0% |
| ! | GATTTTGTTGGTGCAGAACA+AGG | + | chr8.3:48784172-48784191 | MS.gene32263:intron | 40.0% |
| ! | GTTTGTTCTGAACAGAAGTG+TGG | + | chr8.3:48783678-48783697 | MS.gene32263:CDS | 40.0% |
| ! | TATGTATGTGGGTGTTGTGA+TGG | + | chr8.3:48783645-48783664 | MS.gene32263:CDS | 40.0% |
| ! | TCTGAACAGAAGTGTGGTTT+GGG | + | chr8.3:48783684-48783703 | MS.gene32263:CDS | 40.0% |
| ! | TTCTGAACAGAAGTGTGGTT+TGG | + | chr8.3:48783683-48783702 | MS.gene32263:CDS | 40.0% |
| !! | GTTCTAAGATTCCACAGAAG+AGG | + | chr8.3:48783607-48783626 | MS.gene32263:CDS | 40.0% |
| !!! | GGCGGTTATTCTTTTTTTGG+TGG | - | chr8.3:48783109-48783128 | None:intergenic | 40.0% |
| !!! | GTGTTTTTTGTGGATCCAGA+AGG | + | chr8.3:48783567-48783586 | MS.gene32263:CDS | 40.0% |
| CAGCATTAGCATCTGTGCTA+TGG | - | chr8.3:48783305-48783324 | None:intergenic | 45.0% | |
| CATTTACCAGCAACAACAGC+AGG | + | chr8.3:48782960-48782979 | MS.gene32263:CDS | 45.0% | |
| CTAAGATTCCACAGAAGAGG+TGG | + | chr8.3:48783610-48783629 | MS.gene32263:CDS | 45.0% | |
| GGATCCACAAAAAACACCTC+AGG | - | chr8.3:48783564-48783583 | None:intergenic | 45.0% | |
| GTAAAACCCACTCTCAGATC+TGG | + | chr8.3:48783793-48783812 | MS.gene32263:CDS | 45.0% | |
| TAGCACAGATGCTAATGCTG+AGG | + | chr8.3:48783305-48783324 | MS.gene32263:CDS | 45.0% | |
| TTCATTGCTCCCTCTTTCGT+AGG | - | chr8.3:48783492-48783511 | None:intergenic | 45.0% | |
| TTGTGCTTTACTTGTGCCTG+AGG | + | chr8.3:48783545-48783564 | MS.gene32263:CDS | 45.0% | |
| ! | AGGTAGGTCGGTGATGTTTT+TGG | - | chr8.3:48782920-48782939 | None:intergenic | 45.0% |
| ! | CTTTTCCCAGATCTGAGAGT+GGG | - | chr8.3:48783802-48783821 | None:intergenic | 45.0% |
| ! | GATCCAATCGTTTTCTGCGA+CGG | + | chr8.3:48783327-48783346 | MS.gene32263:CDS | 45.0% |
| ! | TTAGTCGTTTGTTGGGAGGT+AGG | - | chr8.3:48782936-48782955 | None:intergenic | 45.0% |
| !! | AAAGGTGCTACTGTTGTTGC+TGG | + | chr8.3:48783765-48783784 | MS.gene32263:CDS | 45.0% |
| !! | GTGTTGTGATGGATGTGCTT+TGG | + | chr8.3:48783656-48783675 | MS.gene32263:CDS | 45.0% |
| !! | TTTTTGATTGGGGTGGGTGA+GGG | - | chr8.3:48783219-48783238 | None:intergenic | 45.0% |
| !!! | GGATGTTGTTTTGGTGGTGA+AGG | - | chr8.3:48783143-48783162 | None:intergenic | 45.0% |
| !!! | GTTGTTTTGGTGGTGAAGGT+GGG | - | chr8.3:48783139-48783158 | None:intergenic | 45.0% |
| !!! | TGTGCCTGAGGTGTTTTTTG+TGG | + | chr8.3:48783557-48783576 | MS.gene32263:CDS | 45.0% |
| !!! | TGTTGTTTTGGTGGTGAAGG+TGG | - | chr8.3:48783140-48783159 | None:intergenic | 45.0% |
| !!! | TTGTTTTGGTGGTGAAGGTG+GGG | - | chr8.3:48783138-48783157 | None:intergenic | 45.0% |
| !!! | TTTTTTGATTGGGGTGGGTG+AGG | - | chr8.3:48783220-48783239 | None:intergenic | 45.0% |
| ATGGTCCATGCTTCCTGCTA+TGG | + | chr8.3:48783360-48783379 | MS.gene32263:CDS | 50.0% | |
| CACAAAACCAGTCACCCTCT+GGG | - | chr8.3:48783407-48783426 | None:intergenic | 50.0% | |
| CCACTCTCAGATCTGGGAAA+AGG | + | chr8.3:48783800-48783819 | MS.gene32263:CDS | 50.0% | |
| CTGCGACGGCTGTAACTTAA+TGG | + | chr8.3:48783341-48783360 | MS.gene32263:CDS | 50.0% | |
| CTGGGATCTGTTTCACCAGA+GGG | - | chr8.3:48783389-48783408 | None:intergenic | 50.0% | |
| CTGGTGAAACAGATCCCAGA+GGG | + | chr8.3:48783390-48783409 | MS.gene32263:CDS | 50.0% | |
| GAGGGAGCAACGAATTGGAT+CGG | - | chr8.3:48783466-48783485 | None:intergenic | 50.0% | |
| GATTCCACAGAAGAGGTGGT+TGG | + | chr8.3:48783614-48783633 | MS.gene32263:CDS | 50.0% | |
| GGTTACCATAGCAGGAAGCA+TGG | - | chr8.3:48783368-48783387 | None:intergenic | 50.0% | |
| GTTCTTCCTGCTGTTGTTGC+TGG | - | chr8.3:48782969-48782988 | None:intergenic | 50.0% | |
| TCAATCCCTTCTCTCCCTTC+TGG | - | chr8.3:48783585-48783604 | None:intergenic | 50.0% | |
| TCACAAAACCAGTCACCCTC+TGG | - | chr8.3:48783408-48783427 | None:intergenic | 50.0% | |
| TCCCTCTGTCCTACGAAAGA+GGG | + | chr8.3:48783480-48783499 | MS.gene32263:CDS | 50.0% | |
| TCCCTCTTTCGTAGGACAGA+GGG | - | chr8.3:48783484-48783503 | None:intergenic | 50.0% | |
| TCGACGTTAAGGTCGATGAG+TGG | - | chr8.3:48783180-48783199 | None:intergenic | 50.0% | |
| TCTGGTGAAACAGATCCCAG+AGG | + | chr8.3:48783389-48783408 | MS.gene32263:CDS | 50.0% | |
| TGGATCCAGAAGGGAGAGAA+GGG | + | chr8.3:48783577-48783596 | MS.gene32263:CDS | 50.0% | |
| TTCCTGCTATGGTAACCCTC+TGG | + | chr8.3:48783371-48783390 | MS.gene32263:CDS | 50.0% | |
| TTCTCCAACCACCTCTTCTG+TGG | - | chr8.3:48783621-48783640 | None:intergenic | 50.0% | |
| TTGGTGCAGAACAAGGGATC+CGG | + | chr8.3:48784179-48784198 | MS.gene32263:intron | 50.0% | |
| ! | CCTTTTCCCAGATCTGAGAG+TGG | - | chr8.3:48783803-48783822 | None:intergenic | 50.0% |
| ! | TCGTTTGTTGGGAGGTAGGT+CGG | - | chr8.3:48782932-48782951 | None:intergenic | 50.0% |
| ! | TCTGGGATCTGTTTCACCAG+AGG | - | chr8.3:48783390-48783409 | None:intergenic | 50.0% |
| !! | CGTCGGTTGGGATGTTGTTT+TGG | - | chr8.3:48783152-48783171 | None:intergenic | 50.0% |
| !! | GGGGTGTTGATGATGAAGGT+GGG | - | chr8.3:48783065-48783084 | None:intergenic | 50.0% |
| !! | GGGTGTTGATGATGAAGGTG+GGG | - | chr8.3:48783064-48783083 | None:intergenic | 50.0% |
| !! | TTTTGATTGGGGTGGGTGAG+GGG | - | chr8.3:48783218-48783237 | None:intergenic | 50.0% |
| !!! | CGGTTGGGATGTTGTTTTGG+TGG | - | chr8.3:48783149-48783168 | None:intergenic | 50.0% |
| AACAGATCCCAGAGGGTGAC+TGG | + | chr8.3:48783397-48783416 | MS.gene32263:CDS | 55.0% | |
| AGAAGGAAAGTGGGCCCATC+TGG | + | chr8.3:48783521-48783540 | MS.gene32263:CDS | 55.0% | |
| CACCAGAGGGTTACCATAGC+AGG | - | chr8.3:48783376-48783395 | None:intergenic | 55.0% | |
| CAGCCGTCGCAGAAAACGAT+TGG | - | chr8.3:48783333-48783352 | None:intergenic | 55.0% | |
| CTCCCTCTGTCCTACGAAAG+AGG | + | chr8.3:48783479-48783498 | MS.gene32263:CDS | 55.0% | |
| CTCCCTCTTTCGTAGGACAG+AGG | - | chr8.3:48783485-48783504 | None:intergenic | 55.0% | |
| GGACAGAGGGAGCAACGAAT+TGG | - | chr8.3:48783471-48783490 | None:intergenic | 55.0% | |
| GTCGATGAGTGGAACAGCGT+CGG | - | chr8.3:48783169-48783188 | None:intergenic | 55.0% | |
| GTGGATCCAGAAGGGAGAGA+AGG | + | chr8.3:48783576-48783595 | MS.gene32263:CDS | 55.0% | |
| GTGGTGAAGGTGGGGTTGAA+GGG | - | chr8.3:48783130-48783149 | None:intergenic | 55.0% | |
| TGGTGCAGAACAAGGGATCC+GGG | + | chr8.3:48784180-48784199 | MS.gene32263:intron | 55.0% | |
| !! | ATGAGTGGAACAGCGTCGGT+TGG | - | chr8.3:48783165-48783184 | None:intergenic | 55.0% |
| !! | GGGGGTGTTGATGATGAAGG+TGG | - | chr8.3:48783066-48783085 | None:intergenic | 55.0% |
| !! | GGTGGGGGTGTTGATGATGA+AGG | - | chr8.3:48783069-48783088 | None:intergenic | 55.0% |
| !! | TGAGTGGAACAGCGTCGGTT+GGG | - | chr8.3:48783164-48783183 | None:intergenic | 55.0% |
| GGTGGTGAAGGTGGGGTTGA+AGG | - | chr8.3:48783131-48783150 | None:intergenic | 60.0% | |
| GTGAAGGTGGGGTTGAAGGG+CGG | - | chr8.3:48783127-48783146 | None:intergenic | 60.0% | |
| GGGGTGGGTGAGGGGAGAGA+AGG | - | chr8.3:48783210-48783229 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 48782907 | 48784238 | 48782907 | ID=MS.gene32263 |
| chr8.3 | mRNA | 48782907 | 48784238 | 48782907 | ID=MS.gene32263.t1;Parent=MS.gene32263 |
| chr8.3 | exon | 48782907 | 48783821 | 48782907 | ID=MS.gene32263.t1.exon1;Parent=MS.gene32263.t1 |
| chr8.3 | CDS | 48782907 | 48783821 | 48782907 | ID=cds.MS.gene32263.t1;Parent=MS.gene32263.t1 |
| chr8.3 | exon | 48784188 | 48784238 | 48784188 | ID=MS.gene32263.t1.exon2;Parent=MS.gene32263.t1 |
| chr8.3 | CDS | 48784188 | 48784238 | 48784188 | ID=cds.MS.gene32263.t1;Parent=MS.gene32263.t1 |
| Gene Sequence |
| Protein sequence |
