AlfalfaGEDB | MS.gene32342

M. sativa cultivar XinJiangDaYe / MS.gene32342

KEGG: -
GO: -
PFAM: PF06376.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32342.t1	XP_013466382.1	85.5	62	9	0	1	62	1	62	1.20E-08	68.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32342.t1	A0A072VG86	85.5	62	9	0	1	62	1	62	8.6e-09	68.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene32342	0.804879	1.75E-49	-1.69E-46
MS.gene051996	MS.gene32342	0.804086	2.56E-49	-1.69E-46
MS.gene052223	MS.gene32342	0.803523	3.35E-49	-1.69E-46
MS.gene054138	MS.gene32342	0.96247	6.47E-121	-1.69E-46
MS.gene054146	MS.gene32342	0.801105	1.05E-48	-1.69E-46
MS.gene054742	MS.gene32342	0.831612	1.51E-55	-1.69E-46
MS.gene056330	MS.gene32342	0.853265	2.68E-61	-1.69E-46
MS.gene056920	MS.gene32342	0.809222	2.10E-50	-1.69E-46
MS.gene056922	MS.gene32342	0.819745	9.88E-53	-1.69E-46
MS.gene056923	MS.gene32342	0.821296	4.35E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene048906	MS.gene32342	PPI
MS.gene06050	MS.gene32342	PPI
MS.gene55776	MS.gene32342	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32342.t1	MTR_1g028610	95.161	62	3	0	1	62	1	62	6.98e-29	97.4
MS.gene32342.t1	MTR_3g090830	77.966	59	11	1	4	62	7	63	9.14e-25	87.0
MS.gene32342.t1	MTR_6g086390	41.667	60	35	0	3	62	5	64	2.74e-11	53.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene32342.t1	AT2G46330	66.000	50	15	1	13	62	15	62	6.39e-16	65.1
MS.gene32342.t1	AT3G61640	57.143	56	22	1	7	62	9	62	1.68e-15	63.9
MS.gene32342.t1	AT5G53250	76.923	39	9	0	24	62	25	63	9.63e-15	61.6

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Find 11 sgRNAs with CRISPR-Local

Find 52 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATGCGTAAATAAGACCA+AGG	0.685667	1.4:+14012022	None:intergenic
AATAGCATATGTCCTAATGC+TGG	0.576700	1.4:-14011114	MS.gene32342:CDS
AATGATGTAAGTGAGAAGCA+AGG	0.690125	1.4:+14011088	None:intergenic
AGCATATGTCCTAATGCTGG+TGG	0.610729	1.4:-14011111	MS.gene32342:CDS
GAAGCAAGGCCACCAGCATT+AGG	0.444107	1.4:+14011102	None:intergenic
GCTCCTGCTCCCACAAGTGA+TGG	0.550760	1.4:-14011958	MS.gene32342:intron
GTGGGAGCAGGAGCAGGAGC+CGG	0.500195	1.4:+14011967	None:intergenic
TCACTTGTGGGAGCAGGAGC+AGG	0.473725	1.4:+14011961	None:intergenic
TTACCATCACTTGTGGGAGC+AGG	0.532408	1.4:+14011955	None:intergenic
TTAGGACATATGCTATTGCT+TGG	0.507960	1.4:+14011120	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACTTACCATCACTTGT+GGG	+	chr1.4:14011187-14011206	None:intergenic	30.0%
AAAAAGAGTTTCTCAACATG+AGG	+	chr1.4:14011415-14011434	None:intergenic	30.0%
AATCCATGAACCATATAAGA+TGG	+	chr1.4:14011278-14011297	None:intergenic	30.0%
GATACAATATAACTATGGAG+TGG	+	chr1.4:14011916-14011935	None:intergenic	30.0%
TAAAAACTTACCATCACTTG+TGG	+	chr1.4:14011188-14011207	None:intergenic	30.0%
TACAGTTCAACTTTCAGATA+TGG	-	chr1.4:14011851-14011870	MS.gene32342:intron	30.0%
AAGATGCGTAAATAAGACCA+AGG	+	chr1.4:14011114-14011133	None:intergenic	35.0%
AATAGCATATGTCCTAATGC+TGG	-	chr1.4:14012019-14012038	MS.gene32342:CDS	35.0%
AATCATGGTTCCATTCTCAT+CGG	+	chr1.4:14011686-14011705	None:intergenic	35.0%
AATGATGTAAGTGAGAAGCA+AGG	+	chr1.4:14012048-14012067	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	14011082	14012073	14011082	ID=MS.gene32342
chr1.4	mRNA	14011082	14012073	14011082	ID=MS.gene32342.t1;Parent=MS.gene32342
chr1.4	exon	14011959	14012073	14011959	ID=MS.gene32342.t1.exon1;Parent=MS.gene32342.t1
chr1.4	CDS	14011959	14012073	14011959	ID=cds.MS.gene32342.t1;Parent=MS.gene32342.t1
chr1.4	exon	14011082	14011155	14011082	ID=MS.gene32342.t1.exon2;Parent=MS.gene32342.t1
chr1.4	CDS	14011082	14011155	14011082	ID=cds.MS.gene32342.t1;Parent=MS.gene32342.t1

Gene Sequence

>MS.gene32342

ATGGCAGTTTCATTTTGGGTGGTCGTGTTCCTTGGTCTTATTTACGCATCTTTTGCGTCAATGGCTTCTTCACAGTCTGTTGCTCCGGCTCCTGCTCCTGCTCCCACAAGTGATGGTAAGTTTTTATTAAGATTATGATTTTAACATAGGTTTTTCAAGTATTCATAAACTTCATCCTTCGATGTTGATCTCACCATCTTATATGGTTCATGGATTATAATCCTAATTGTGTTATTTTTCTTGAGAATCAAACTTGTGAAAGTTGAATGATTATGAAATTATAATATAAGTCATAAATTCTTGATTTTGATTATGAAAGATAAGATTTTACCTCATGTTGAGAAACTCTTTTTGTCTTGATAATAATATCTCAATCAAAAACTTTAAATAAGGTTTACAGTTGCAATTTAGACTACAACATCTGGTATTTGATGTCTCAGTGACCACAATGTGATTCTGGTTGAAGTCGCACCAATCATGTATAGCTGTGATTCTCTAAAATAACAAAATTTGTGATGCGTCGTCGCGATTTGAAATATTTCTCTCATTTTCTTTTGAGTTTCTTTGCCTAATAAATCTAGACTATATTGGGTTTCATGCACCGATGAGAATGGAACCATGATTAACAATTCACAAACAGTTTTGTTCAATTCAGTTTGTGAACTGTGCCACAATTTAATTATTTTTCGGTGTGACTTTTGGTTTTTTTTTTTCAACGGTCCTATTATCAGTTAATAATAACAATTTGATATAGTTCGATTCAAAAAGGTACAGTTCAACTTTCAGATATGGATGCCTTTTGTAGGAGGGGAGCTCACATTTAAATGAAACCCACTCCATAGTTATATTGTATCAAATGTAGTTGTATGGTTTCAAACCGCATGGCTAATAATTAAAATTGTTCTTAAAATTTTGCAGGAACATCAATTGACCAAGCAATAGCATATGTCCTAATGCTGGTGGCCTTGCTTCTCACTTACATCATTCATTAA

Protein sequence

>MS.gene32342.t1

MAVSFWVVVFLGLIYASFASMASSQSVAPAPAPAPTSDGTSIDQAIAYVLMLVALLLTYIIH