Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34100.t1 | XP_003591857.2 | 96.9 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 3.50E-176 | 627.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34100.t1 | Q8GXG1 | 80.0 | 325 | 60 | 1 | 1 | 320 | 1 | 325 | 2.4e-149 | 529.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34100.t1 | G7I4Z5 | 96.9 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 2.5e-176 | 627.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34100 | MS.gene044476 | PPI |
| MS.gene34100 | MS.gene063514 | PPI |
| MS.gene044475 | MS.gene34100 | PPI |
| MS.gene063515 | MS.gene34100 | PPI |
| MS.gene03345 | MS.gene34100 | PPI |
| MS.gene34100 | MS.gene038825 | PPI |
| MS.gene033042 | MS.gene34100 | PPI |
| MS.gene34100 | MS.gene038824 | PPI |
| MS.gene34100 | MS.gene033041 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34100.t1 | MTR_1g094030 | 96.875 | 320 | 10 | 0 | 1 | 320 | 1 | 320 | 0.0 | 637 |
| MS.gene34100.t1 | MTR_3g102370 | 86.025 | 322 | 43 | 1 | 1 | 320 | 1 | 322 | 0.0 | 576 |
| MS.gene34100.t1 | MTR_1g018760 | 82.462 | 325 | 52 | 1 | 1 | 320 | 1 | 325 | 0.0 | 551 |
| MS.gene34100.t1 | MTR_4g109900 | 57.895 | 323 | 126 | 2 | 2 | 319 | 1 | 318 | 1.36e-128 | 370 |
| MS.gene34100.t1 | MTR_4g109920 | 58.255 | 321 | 129 | 4 | 2 | 319 | 1 | 319 | 4.85e-126 | 363 |
| MS.gene34100.t1 | MTR_8g031580 | 28.990 | 307 | 169 | 8 | 6 | 275 | 23 | 317 | 9.84e-24 | 100 |
| MS.gene34100.t1 | MTR_8g031580 | 28.990 | 307 | 169 | 8 | 6 | 275 | 23 | 317 | 2.47e-23 | 99.8 |
| MS.gene34100.t1 | MTR_8g031580 | 27.074 | 229 | 120 | 7 | 85 | 276 | 1 | 219 | 5.33e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34100.t1 | AT3G16150 | 80.000 | 325 | 60 | 1 | 1 | 320 | 1 | 325 | 0.0 | 536 |
| MS.gene34100.t1 | AT5G08100 | 57.188 | 320 | 128 | 2 | 1 | 319 | 1 | 312 | 1.05e-126 | 365 |
| MS.gene34100.t1 | AT5G08100 | 56.250 | 240 | 97 | 1 | 80 | 319 | 1 | 232 | 1.37e-91 | 273 |
| MS.gene34100.t1 | AT4G00590 | 27.305 | 282 | 170 | 6 | 6 | 254 | 15 | 294 | 2.66e-19 | 88.2 |
| MS.gene34100.t1 | AT5G61540 | 27.444 | 266 | 152 | 8 | 67 | 298 | 80 | 338 | 4.33e-16 | 78.6 |
| MS.gene34100.t1 | AT4G00590 | 26.838 | 272 | 169 | 6 | 6 | 254 | 15 | 279 | 7.38e-16 | 78.2 |
| MS.gene34100.t1 | AT5G61540 | 27.500 | 240 | 133 | 8 | 93 | 298 | 4 | 236 | 3.81e-13 | 68.6 |
| MS.gene34100.t1 | AT5G61540 | 27.500 | 240 | 133 | 8 | 93 | 298 | 4 | 236 | 3.81e-13 | 68.6 |
Find 101 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCATACCTAGGCTTCTC+TGG | 0.212343 | 1.2:+74627494 | MS.gene34100:CDS |
| ACAAATCCTCTGTTCAATTC+TGG | 0.215544 | 1.2:+74627323 | MS.gene34100:CDS |
| AGAAGATGTGGTGCTGTTTC+TGG | 0.252401 | 1.2:+74627413 | MS.gene34100:CDS |
| CTTACTCATTGTCTTAATAT+TGG | 0.263069 | 1.2:+74625853 | MS.gene34100:CDS |
| TTCAGCATACCAACATTATC+AGG | 0.310050 | 1.2:-74627685 | None:intergenic |
| GAAGTTGTTTGGCTTCTTCC+TGG | 0.311187 | 1.2:-74625831 | None:intergenic |
| GTTATGGAGTACAAAGGTTT+TGG | 0.315753 | 1.2:+74628141 | MS.gene34100:CDS |
| GGCTCAAGGAGGTGGGAATA+TGG | 0.322596 | 1.2:+74628304 | MS.gene34100:CDS |
| AATTGTAATGGAATGTTTAG+AGG | 0.352405 | 1.2:+74628264 | MS.gene34100:CDS |
| GCTTATGGATTTAATTGTAA+TGG | 0.370266 | 1.2:+74628252 | MS.gene34100:CDS |
| ACAATGAGTAAGAAGTTGTT+TGG | 0.370594 | 1.2:-74625842 | None:intergenic |
| TGGCGTTGTGGTGGGAGATT+AGG | 0.373934 | 1.2:-74625811 | None:intergenic |
| CAAATCCTCTGTTCAATTCT+GGG | 0.384284 | 1.2:+74627324 | MS.gene34100:CDS |
| AGCAAGGGTGAAGTGGCTTA+TGG | 0.388811 | 1.2:+74628237 | MS.gene34100:CDS |
| TTGCTAGGGTGTGGATATTG+AGG | 0.391771 | 1.2:+74627642 | MS.gene34100:intron |
| ATTGGTGACTCGCCTATCAT+AGG | 0.392059 | 1.2:+74628024 | MS.gene34100:CDS |
| CATGATGCTAGCCTCCATTT+CGG | 0.392833 | 1.2:-74627378 | None:intergenic |
| ACCACACACCCGACGGTCTC+TGG | 0.394019 | 1.2:-74627931 | None:intergenic |
| AGAGGTGTTGCTACTGAGGA+TGG | 0.410810 | 1.2:+74628282 | MS.gene34100:CDS |
| AGCAAAAGGAACAGCCGAAA+TGG | 0.413445 | 1.2:+74627364 | MS.gene34100:CDS |
| CGTCTTGACGAAGGGTTTGC+GGG | 0.415283 | 1.2:+74628198 | MS.gene34100:CDS |
| TGAGGATGGGCTCAAGGAGG+TGG | 0.421104 | 1.2:+74628296 | MS.gene34100:CDS |
| AACAAAATGAATGGTCGAAT+TGG | 0.423653 | 1.2:+74628006 | MS.gene34100:CDS |
| GGCAGAGAAAATGGTTGGTT+GGG | 0.429290 | 1.2:+74625756 | None:intergenic |
| AAGAATCCACTGCAAATGAA+TGG | 0.441056 | 1.2:+74627886 | MS.gene34100:CDS |
| AGAAGAATTTGCGAGGGAAC+AGG | 0.446121 | 1.2:+74627520 | MS.gene34100:CDS |
| GACCGTCGGGTGTGTGGTGG+TGG | 0.448465 | 1.2:+74627936 | MS.gene34100:CDS |
| CGAAGTCCACGGCCTCTTGA+AGG | 0.450589 | 1.2:-74628164 | None:intergenic |
| GGATCTGCTTTGACAGCAAA+AGG | 0.455548 | 1.2:+74627350 | MS.gene34100:CDS |
| GGAGTCTCCTGCACTGGTGA+AGG | 0.456340 | 1.2:+74628075 | MS.gene34100:CDS |
| TGTGCTGCTGCAACATCAAC+CGG | 0.456351 | 1.2:+74627973 | MS.gene34100:CDS |
| ATTGCTGTGCATGGTGGCGC+AGG | 0.462373 | 1.2:+74625781 | MS.gene34100:CDS |
| GGTTGGGCTATTGCTGTGCA+TGG | 0.462380 | 1.2:+74625772 | MS.gene34100:CDS |
| CTTCTTCCTGGCGTTGTGGT+GGG | 0.462522 | 1.2:-74625819 | None:intergenic |
| GAGTCTCCTGCACTGGTGAA+GGG | 0.464163 | 1.2:+74628076 | MS.gene34100:CDS |
| ATTCATACCTAGGCTTCTCT+GGG | 0.470246 | 1.2:+74627495 | MS.gene34100:CDS |
| AAAGGAAGCAAACACAATTC+TGG | 0.470294 | 1.2:+74627714 | MS.gene34100:CDS |
| AGCCTCCCCTTCACCAGTGC+AGG | 0.471152 | 1.2:-74628082 | None:intergenic |
| GCGTGAGGTGGCTGCAGTTA+TGG | 0.483208 | 1.2:+74628125 | MS.gene34100:CDS |
| AGAATCCACTGCAAATGAAT+GGG | 0.483565 | 1.2:+74627887 | MS.gene34100:CDS |
| TCTTATTGCTGTGTCTAGCA+AGG | 0.494399 | 1.2:+74628221 | MS.gene34100:CDS |
| GCTTCTTCCTGGCGTTGTGG+TGG | 0.496434 | 1.2:-74625820 | None:intergenic |
| ACAAGGCGAGCAAGTGAGAC+AGG | 0.496854 | 1.2:-74627455 | None:intergenic |
| TCGTCTTGACGAAGGGTTTG+CGG | 0.499751 | 1.2:+74628197 | MS.gene34100:CDS |
| CTCACTTGCTCGCCTTGTCA+TGG | 0.505877 | 1.2:+74627460 | MS.gene34100:CDS |
| GGGCAGAGAAAATGGTTGGT+TGG | 0.506049 | 1.2:+74625755 | None:intergenic |
| TAATCTCCCACCACAACGCC+AGG | 0.511047 | 1.2:+74625813 | MS.gene34100:CDS |
| TCTGGAGAATAAGCGCTTAG+TGG | 0.513544 | 1.2:-74627913 | None:intergenic |
| GTGTGTGGAGTCTCCTGCAC+TGG | 0.518379 | 1.2:+74628069 | MS.gene34100:CDS |
| GGCATCCCATTCATTTGCAG+TGG | 0.519275 | 1.2:-74627892 | None:intergenic |
| CTTATTCTCCAGAGACCGTC+GGG | 0.520348 | 1.2:+74627923 | MS.gene34100:CDS |
| GACTCGCCTATCATAGGCGC+TGG | 0.520783 | 1.2:+74628030 | MS.gene34100:CDS |
| GAGGTGTTGCTACTGAGGAT+GGG | 0.525434 | 1.2:+74628283 | MS.gene34100:CDS |
| GACATCGACAGCAGAACCAT+TGG | 0.526631 | 1.2:-74625893 | None:intergenic |
| TCCAGAGACCGTCGGGTGTG+TGG | 0.528715 | 1.2:+74627930 | MS.gene34100:CDS |
| TGCTACTGAGGATGGGCTCA+AGG | 0.533194 | 1.2:+74628290 | MS.gene34100:CDS |
| AGTCTCCTGCACTGGTGAAG+GGG | 0.534500 | 1.2:+74628077 | MS.gene34100:CDS |
| CCTCTGTTCAATTCTGGGCG+TGG | 0.534917 | 1.2:+74627329 | MS.gene34100:CDS |
| TCGAACATCGTCTTGACGAA+GGG | 0.539358 | 1.2:+74628190 | MS.gene34100:CDS |
| ATATCTGCTCTCCGTTCCAA+TGG | 0.541714 | 1.2:+74625877 | MS.gene34100:CDS |
| GGACTAATGAACAAAATGAA+TGG | 0.549652 | 1.2:+74627997 | MS.gene34100:CDS |
| ACGTGGCACTCTTGCGCGTG+AGG | 0.552881 | 1.2:+74628110 | MS.gene34100:CDS |
| ATCGAACATCGTCTTGACGA+AGG | 0.559365 | 1.2:+74628189 | MS.gene34100:CDS |
| CGAAATGGAGGCTAGCATCA+TGG | 0.562007 | 1.2:+74627379 | MS.gene34100:CDS |
| TACGTTCCAGCGCCTATGAT+AGG | 0.563342 | 1.2:-74628036 | None:intergenic |
| CTTATTGCTGTGTCTAGCAA+GGG | 0.569036 | 1.2:+74628222 | MS.gene34100:CDS |
| GAGGATGGGCTCAAGGAGGT+GGG | 0.569792 | 1.2:+74628297 | MS.gene34100:CDS |
| TGGCACTCTTGCGCGTGAGG+TGG | 0.570409 | 1.2:+74628113 | MS.gene34100:CDS |
| CTTCTGCCCCAGAGAAGCCT+AGG | 0.570888 | 1.2:-74627502 | None:intergenic |
| TGTGTCTAGCAAGGGTGAAG+TGG | 0.572734 | 1.2:+74628230 | MS.gene34100:CDS |
| AAGTCCCCTCATTCATACCT+AGG | 0.579675 | 1.2:+74627485 | MS.gene34100:CDS |
| AGAAGCCTAGGTATGAATGA+GGG | 0.579780 | 1.2:-74627490 | None:intergenic |
| TGTGCATGGTGGCGCAGGTG+TGG | 0.580212 | 1.2:+74625786 | MS.gene34100:CDS |
| GAGAAGCCTAGGTATGAATG+AGG | 0.580849 | 1.2:-74627491 | None:intergenic |
| CTCCTGCACTGGTGAAGGGG+AGG | 0.584368 | 1.2:+74628080 | MS.gene34100:CDS |
| TGGTGGTGGACAGTGAAGGA+AGG | 0.585184 | 1.2:+74627950 | MS.gene34100:CDS |
| TTGGCTTCTTCCTGGCGTTG+TGG | 0.586140 | 1.2:-74625823 | None:intergenic |
| TTCATCACTCCTGATAATGT+TGG | 0.587952 | 1.2:+74627676 | MS.gene34100:CDS |
| AAAAGGAACAGCCGAAATGG+AGG | 0.605519 | 1.2:+74627367 | MS.gene34100:CDS |
| CCTAGGGCAGAGAAAATGGT+TGG | 0.607033 | 1.2:+74625751 | None:intergenic |
| AGAGACCGTCGGGTGTGTGG+TGG | 0.610480 | 1.2:+74627933 | MS.gene34100:CDS |
| GTTTAGAGGTGTTGCTACTG+AGG | 0.616585 | 1.2:+74628278 | MS.gene34100:CDS |
| CTGGGGCAGAAGAATTTGCG+AGG | 0.617234 | 1.2:+74627513 | MS.gene34100:CDS |
| GAAGCCTAGGTATGAATGAG+GGG | 0.629698 | 1.2:-74627489 | None:intergenic |
| GCTTATTCTCCAGAGACCGT+CGG | 0.632910 | 1.2:+74627922 | MS.gene34100:CDS |
| ATGGAGGCTAGCATCATGGA+TGG | 0.640792 | 1.2:+74627383 | MS.gene34100:CDS |
| GTCCACCACCACACACCCGA+CGG | 0.644949 | 1.2:-74627938 | None:intergenic |
| CGACAGCAGAACCATTGGAA+CGG | 0.649930 | 1.2:-74625888 | None:intergenic |
| GCTGCAGTTATGGAGTACAA+AGG | 0.662893 | 1.2:+74628135 | MS.gene34100:CDS |
| ATGTTCGATAACGAAGTCCA+CGG | 0.665571 | 1.2:-74628175 | None:intergenic |
| TGGGGCAGAAGAATTTGCGA+GGG | 0.674968 | 1.2:+74627514 | MS.gene34100:CDS |
| TGTGTGGTGGTGGACAGTGA+AGG | 0.675693 | 1.2:+74627946 | MS.gene34100:CDS |
| TGGGCTATTGCTGTGCATGG+TGG | 0.681977 | 1.2:+74625775 | MS.gene34100:CDS |
| GATGGTACAAAGAGAAGATG+TGG | 0.684757 | 1.2:+74627401 | MS.gene34100:CDS |
| GAAGGGGAGGCTATCATACG+TGG | 0.685255 | 1.2:+74628093 | MS.gene34100:CDS |
| GCTGCTGCAACATCAACCGG+AGG | 0.704289 | 1.2:+74627976 | MS.gene34100:CDS |
| TACTGAGGATGGGCTCAAGG+AGG | 0.711569 | 1.2:+74628293 | MS.gene34100:CDS |
| TGGTATGCTGAAACTTGCAA+AGG | 0.718250 | 1.2:+74627696 | MS.gene34100:CDS |
| CCACGCCCAGAATTGAACAG+AGG | 0.721341 | 1.2:-74627329 | None:intergenic |
| TTCATACCTAGGCTTCTCTG+GGG | 0.724089 | 1.2:+74627496 | MS.gene34100:CDS |
| ACGTACGCATGTGAAGTGTG+TGG | 0.732488 | 1.2:+74628054 | MS.gene34100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTATAAAATTATTTCAATA+TGG | - | chr1.2:74626085-74626104 | None:intergenic | 10.0% |
| !!! | AATAACATGTTTTTATAAAT+GGG | + | chr1.2:74627042-74627061 | MS.gene34100:intron | 10.0% |
| !!! | TGTTTAATATATTTCTTTTT+CGG | + | chr1.2:74626402-74626421 | MS.gene34100:intron | 10.0% |
| !! | CTTTCTTTCAAAAAAAAAAA+CGG | + | chr1.2:74626988-74627007 | MS.gene34100:intron | 15.0% |
| !! | GTATAAATTATATCAACAAT+TGG | + | chr1.2:74627546-74627565 | MS.gene34100:intron | 15.0% |
| !! | TATTCTACAATTTATATCAA+TGG | + | chr1.2:74626235-74626254 | MS.gene34100:intron | 15.0% |
| !!! | CAATAACATGTTTTTATAAA+TGG | + | chr1.2:74627041-74627060 | MS.gene34100:intron | 15.0% |
| !!! | GATAACATGTTTTTATAAAT+GGG | + | chr1.2:74627010-74627029 | MS.gene34100:intron | 15.0% |
| !! | AACAAAAATCAATTTCTAAG+AGG | - | chr1.2:74626294-74626313 | None:intergenic | 20.0% |
| !! | TGGATTAAAACTAAAGATAA+GGG | + | chr1.2:74626210-74626229 | MS.gene34100:intron | 20.0% |
| !! | TTGGATTAAAACTAAAGATA+AGG | + | chr1.2:74626209-74626228 | MS.gene34100:intron | 20.0% |
| !!! | AAACATGTTATTGTTATTCA+TGG | - | chr1.2:74626943-74626962 | None:intergenic | 20.0% |
| !!! | GAAATAATTTTATACATGCT+TGG | + | chr1.2:74626089-74626108 | MS.gene34100:intron | 20.0% |
| !!! | GGATAACATGTTTTTATAAA+TGG | + | chr1.2:74627009-74627028 | MS.gene34100:intron | 20.0% |
| !!! | TCTTAGAAATTGATTTTTGT+TGG | + | chr1.2:74626293-74626312 | MS.gene34100:intron | 20.0% |
| !!! | TTTTTGTTTGTACTAGTTAT+AGG | + | chr1.2:74626173-74626192 | MS.gene34100:intron | 20.0% |
| ! | ATCATGTTAGTATCATATGA+TGG | + | chr1.2:74627145-74627164 | MS.gene34100:intron | 25.0% |
| ! | CTTACTCATTGTCTTAATAT+TGG | + | chr1.2:74625853-74625872 | MS.gene34100:CDS | 25.0% |
| ! | GATTAATGAATGAATGTGTT+TGG | + | chr1.2:74627813-74627832 | MS.gene34100:intron | 25.0% |
| ! | GCTTATGGATTTAATTGTAA+TGG | + | chr1.2:74628252-74628271 | MS.gene34100:CDS | 25.0% |
| ! | TACCTAATATTAAATTAGCC+TGG | - | chr1.2:74626755-74626774 | None:intergenic | 25.0% |
| ! | TATCTGAATTCTATCTACAT+AGG | + | chr1.2:74626804-74626823 | MS.gene34100:intron | 25.0% |
| ! | TGTATAAATGCATACTTCTT+TGG | + | chr1.2:74627570-74627589 | MS.gene34100:intron | 25.0% |
| !! | AATTACTTGTTACACATTCA+AGG | - | chr1.2:74627618-74627637 | None:intergenic | 25.0% |
| !! | AATTGTAATGGAATGTTTAG+AGG | + | chr1.2:74628264-74628283 | MS.gene34100:CDS | 25.0% |
| !! | ACCAGTATTTAATGATTTTG+GGG | + | chr1.2:74627269-74627288 | MS.gene34100:intron | 25.0% |
| !! | ACCTAATATTAAATTAGCCT+GGG | - | chr1.2:74626754-74626773 | None:intergenic | 25.0% |
| !! | GACCAGTATTTAATGATTTT+GGG | + | chr1.2:74627268-74627287 | MS.gene34100:intron | 25.0% |
| !! | TATAGGTTTTTGCTTACTAT+TGG | + | chr1.2:74626190-74626209 | MS.gene34100:intron | 25.0% |
| !! | TGACCAGTATTTAATGATTT+TGG | + | chr1.2:74627267-74627286 | MS.gene34100:intron | 25.0% |
| !!! | AACAAGTAATTGTTTTTGCT+AGG | + | chr1.2:74627627-74627646 | MS.gene34100:intron | 25.0% |
| !!! | ACAAGTAATTGTTTTTGCTA+GGG | + | chr1.2:74627628-74627647 | MS.gene34100:intron | 25.0% |
| !!! | TTATCGAGTTTACTTTTAAG+AGG | - | chr1.2:74626428-74626447 | None:intergenic | 25.0% |
| AACAAAATGAATGGTCGAAT+TGG | + | chr1.2:74628006-74628025 | MS.gene34100:CDS | 30.0% | |
| AATCCACAGTTTAATTACTG+CGG | - | chr1.2:74627783-74627802 | None:intergenic | 30.0% | |
| ACAATGAGTAAGAAGTTGTT+TGG | - | chr1.2:74625845-74625864 | None:intergenic | 30.0% | |
| ACCCCAAAATCATTAAATAC+TGG | - | chr1.2:74627273-74627292 | None:intergenic | 30.0% | |
| ACTAAACCACTTGTATGTTT+AGG | + | chr1.2:74626261-74626280 | MS.gene34100:intron | 30.0% | |
| AGACATACTATCTTTGTTAG+AGG | - | chr1.2:74626970-74626989 | None:intergenic | 30.0% | |
| ATCACGATACAAGTTCATTA+AGG | - | chr1.2:74625958-74625977 | None:intergenic | 30.0% | |
| GGACTAATGAACAAAATGAA+TGG | + | chr1.2:74627997-74628016 | MS.gene34100:CDS | 30.0% | |
| TAATGAATGAATGTGTTTGG+TGG | + | chr1.2:74627816-74627835 | MS.gene34100:intron | 30.0% | |
| TACAAACAAAAACAACGTGA+AGG | - | chr1.2:74626165-74626184 | None:intergenic | 30.0% | |
| TATCATATGATGGCTAGAAT+TGG | + | chr1.2:74627155-74627174 | MS.gene34100:intron | 30.0% | |
| TCCCAGGCTAATTTAATATT+AGG | + | chr1.2:74626750-74626769 | MS.gene34100:intron | 30.0% | |
| TGTAGATAGAATTCAGATAC+TGG | - | chr1.2:74626803-74626822 | None:intergenic | 30.0% | |
| ! | CGTGAAGGTTTAATGTTTTT+CGG | - | chr1.2:74626150-74626169 | None:intergenic | 30.0% |
| !! | ACAAAAGCGCTTAAACATAA+CGG | - | chr1.2:74626329-74626348 | None:intergenic | 30.0% |
| !! | GAAATTGATTTTTGTTGGCT+TGG | + | chr1.2:74626298-74626317 | MS.gene34100:intron | 30.0% |
| !! | TATAAATGGGTTGAATGTTG+CGG | + | chr1.2:74627055-74627074 | MS.gene34100:intron | 30.0% |
| AAAGGAAGCAAACACAATTC+TGG | + | chr1.2:74627714-74627733 | MS.gene34100:CDS | 35.0% | |
| AAGAATCCACTGCAAATGAA+TGG | + | chr1.2:74627886-74627905 | MS.gene34100:CDS | 35.0% | |
| ACAAATCCTCTGTTCAATTC+TGG | + | chr1.2:74627323-74627342 | MS.gene34100:CDS | 35.0% | |
| AGAATCCACTGCAAATGAAT+GGG | + | chr1.2:74627887-74627906 | MS.gene34100:CDS | 35.0% | |
| AGAATTGGATTAACCTATGG+TGG | + | chr1.2:74627170-74627189 | MS.gene34100:intron | 35.0% | |
| CAAATCCTCTGTTCAATTCT+GGG | + | chr1.2:74627324-74627343 | MS.gene34100:CDS | 35.0% | |
| GCTAGAATTGGATTAACCTA+TGG | + | chr1.2:74627167-74627186 | MS.gene34100:intron | 35.0% | |
| GTTGTCAAACTCAATGTTCT+AGG | - | chr1.2:74626843-74626862 | None:intergenic | 35.0% | |
| TACACATTCAAGGACCAAAA+TGG | - | chr1.2:74627608-74627627 | None:intergenic | 35.0% | |
| TGAGTGAGACTCTTACAATA+TGG | + | chr1.2:74627080-74627099 | MS.gene34100:intron | 35.0% | |
| TTCAGCATACCAACATTATC+AGG | - | chr1.2:74627688-74627707 | None:intergenic | 35.0% | |
| TTCATTAAGGTGAGAGAGAT+TGG | - | chr1.2:74625945-74625964 | None:intergenic | 35.0% | |
| TTTCTTGATATGTCATTCCC+AGG | + | chr1.2:74626734-74626753 | MS.gene34100:intron | 35.0% | |
| ! | AAGTGAGACAGGATTTTTCA+CGG | - | chr1.2:74627447-74627466 | None:intergenic | 35.0% |
| ! | CATTTTGTTCATTAGTCCTC+CGG | - | chr1.2:74627995-74628014 | None:intergenic | 35.0% |
| ! | GTTATGGAGTACAAAGGTTT+TGG | + | chr1.2:74628141-74628160 | MS.gene34100:CDS | 35.0% |
| ! | TTCATCACTCCTGATAATGT+TGG | + | chr1.2:74627676-74627695 | MS.gene34100:CDS | 35.0% |
| ! | TTCTTTTCGTTTTCAGCTGT+TGG | - | chr1.2:74627871-74627890 | None:intergenic | 35.0% |
| !!! | TAATTGTTTTTGCTAGGGTG+TGG | + | chr1.2:74627633-74627652 | MS.gene34100:intron | 35.0% |
| AGAAGCCTAGGTATGAATGA+GGG | - | chr1.2:74627493-74627512 | None:intergenic | 40.0% | |
| ATGTTCGATAACGAAGTCCA+CGG | - | chr1.2:74628178-74628197 | None:intergenic | 40.0% | |
| ATTCATACCTAGGCTTCTCT+GGG | + | chr1.2:74627495-74627514 | MS.gene34100:CDS | 40.0% | |
| CTATATGTTCACTCCACCAT+AGG | - | chr1.2:74627186-74627205 | None:intergenic | 40.0% | |
| CTTATTGCTGTGTCTAGCAA+GGG | + | chr1.2:74628222-74628241 | MS.gene34100:CDS | 40.0% | |
| GATGGTACAAAGAGAAGATG+TGG | + | chr1.2:74627401-74627420 | MS.gene34100:CDS | 40.0% | |
| TCACCGCAGTAATTAAACTG+TGG | + | chr1.2:74627777-74627796 | MS.gene34100:intron | 40.0% | |
| TCTTATTGCTGTGTCTAGCA+AGG | + | chr1.2:74628221-74628240 | MS.gene34100:CDS | 40.0% | |
| TGGTATGCTGAAACTTGCAA+AGG | + | chr1.2:74627696-74627715 | MS.gene34100:CDS | 40.0% | |
| ! | TTTTTGACAGGTGAGAGAAC+TGG | + | chr1.2:74627298-74627317 | MS.gene34100:intron | 40.0% |
| !!! | TTGGGGTCTCTTTTTTTGAC+AGG | + | chr1.2:74627286-74627305 | MS.gene34100:intron | 40.0% |
| AAAAGGAACAGCCGAAATGG+AGG | + | chr1.2:74627367-74627386 | MS.gene34100:CDS | 45.0% | |
| AAGTCCCCTCATTCATACCT+AGG | + | chr1.2:74627485-74627504 | MS.gene34100:CDS | 45.0% | |
| AGAAGAATTTGCGAGGGAAC+AGG | + | chr1.2:74627520-74627539 | MS.gene34100:CDS | 45.0% | |
| AGCAAAAGGAACAGCCGAAA+TGG | + | chr1.2:74627364-74627383 | MS.gene34100:CDS | 45.0% | |
| ATATCTGCTCTCCGTTCCAA+TGG | + | chr1.2:74625877-74625896 | MS.gene34100:CDS | 45.0% | |
| ATCGAACATCGTCTTGACGA+AGG | + | chr1.2:74628189-74628208 | MS.gene34100:CDS | 45.0% | |
| CATTCAAGGACCAAAATGGC+TGG | - | chr1.2:74627604-74627623 | None:intergenic | 45.0% | |
| CATTCATACCTAGGCTTCTC+TGG | + | chr1.2:74627494-74627513 | MS.gene34100:CDS | 45.0% | |
| GAAGCCTAGGTATGAATGAG+GGG | - | chr1.2:74627492-74627511 | None:intergenic | 45.0% | |
| GAGAAGCCTAGGTATGAATG+AGG | - | chr1.2:74627494-74627513 | None:intergenic | 45.0% | |
| GCTGCAGTTATGGAGTACAA+AGG | + | chr1.2:74628135-74628154 | MS.gene34100:CDS | 45.0% | |
| GGATCTGCTTTGACAGCAAA+AGG | + | chr1.2:74627350-74627369 | MS.gene34100:CDS | 45.0% | |
| GTCGCACCTAAACATACAAG+TGG | - | chr1.2:74626270-74626289 | None:intergenic | 45.0% | |
| TCGAACATCGTCTTGACGAA+GGG | + | chr1.2:74628190-74628209 | MS.gene34100:CDS | 45.0% | |
| TCTGGAGAATAAGCGCTTAG+TGG | - | chr1.2:74627916-74627935 | None:intergenic | 45.0% | |
| TTCATACCTAGGCTTCTCTG+GGG | + | chr1.2:74627496-74627515 | MS.gene34100:CDS | 45.0% | |
| TTGCTAGGGTGTGGATATTG+AGG | + | chr1.2:74627642-74627661 | MS.gene34100:intron | 45.0% | |
| ! | ATTGGTGACTCGCCTATCAT+AGG | + | chr1.2:74628024-74628043 | MS.gene34100:CDS | 45.0% |
| ! | CATGATGCTAGCCTCCATTT+CGG | - | chr1.2:74627381-74627400 | None:intergenic | 45.0% |
| ! | GAAGTTGTTTGGCTTCTTCC+TGG | - | chr1.2:74625834-74625853 | None:intergenic | 45.0% |
| ! | TGAGACAGGATTTTTCACGG+TGG | - | chr1.2:74627444-74627463 | None:intergenic | 45.0% |
| !! | AGAAGATGTGGTGCTGTTTC+TGG | + | chr1.2:74627413-74627432 | MS.gene34100:CDS | 45.0% |
| !! | CAAAGGTTTTGGCCTTCAAG+AGG | + | chr1.2:74628152-74628171 | MS.gene34100:CDS | 45.0% |
| !! | GTTTAGAGGTGTTGCTACTG+AGG | + | chr1.2:74628278-74628297 | MS.gene34100:CDS | 45.0% |
| !! | AATGTTAAATTATTATTTAA+TGG | + | chr1.2:74626703-74626722 | MS.gene34100:intron | 5.0% |
| ACGTACGCATGTGAAGTGTG+TGG | + | chr1.2:74628054-74628073 | MS.gene34100:CDS | 50.0% | |
| AGCAAGGGTGAAGTGGCTTA+TGG | + | chr1.2:74628237-74628256 | MS.gene34100:CDS | 50.0% | |
| ATGGAGGCTAGCATCATGGA+TGG | + | chr1.2:74627383-74627402 | MS.gene34100:CDS | 50.0% | |
| CGAAATGGAGGCTAGCATCA+TGG | + | chr1.2:74627379-74627398 | MS.gene34100:CDS | 50.0% | |
| CGACAGCAGAACCATTGGAA+CGG | - | chr1.2:74625891-74625910 | None:intergenic | 50.0% | |
| CTTATTCTCCAGAGACCGTC+GGG | + | chr1.2:74627923-74627942 | MS.gene34100:CDS | 50.0% | |
| GACATCGACAGCAGAACCAT+TGG | - | chr1.2:74625896-74625915 | None:intergenic | 50.0% | |
| GCTTATTCTCCAGAGACCGT+CGG | + | chr1.2:74627922-74627941 | MS.gene34100:CDS | 50.0% | |
| GGCATCCCATTCATTTGCAG+TGG | - | chr1.2:74627895-74627914 | None:intergenic | 50.0% | |
| TACGTTCCAGCGCCTATGAT+AGG | - | chr1.2:74628039-74628058 | None:intergenic | 50.0% | |
| TCGTCTTGACGAAGGGTTTG+CGG | + | chr1.2:74628197-74628216 | MS.gene34100:CDS | 50.0% | |
| TGGGGCAGAAGAATTTGCGA+GGG | + | chr1.2:74627514-74627533 | MS.gene34100:CDS | 50.0% | |
| TGTGTCTAGCAAGGGTGAAG+TGG | + | chr1.2:74628230-74628249 | MS.gene34100:CDS | 50.0% | |
| ! | GAGGGGACTTTTCCATGACA+AGG | - | chr1.2:74627475-74627494 | None:intergenic | 50.0% |
| ! | GGAGTAGTAGCCAGCCATTT+TGG | + | chr1.2:74627591-74627610 | MS.gene34100:intron | 50.0% |
| ! | TGTGCTGCTGCAACATCAAC+CGG | + | chr1.2:74627973-74627992 | MS.gene34100:CDS | 50.0% |
| !! | AGAGGTGTTGCTACTGAGGA+TGG | + | chr1.2:74628282-74628301 | MS.gene34100:CDS | 50.0% |
| !! | GAGGTGTTGCTACTGAGGAT+GGG | + | chr1.2:74628283-74628302 | MS.gene34100:CDS | 50.0% |
| ACAAGGCGAGCAAGTGAGAC+AGG | - | chr1.2:74627458-74627477 | None:intergenic | 55.0% | |
| CCACGCCCAGAATTGAACAG+AGG | - | chr1.2:74627332-74627351 | None:intergenic | 55.0% | |
| CCTCTGTTCAATTCTGGGCG+TGG | + | chr1.2:74627329-74627348 | MS.gene34100:CDS | 55.0% | |
| CGTCTTGACGAAGGGTTTGC+GGG | + | chr1.2:74628198-74628217 | MS.gene34100:CDS | 55.0% | |
| CTCACTTGCTCGCCTTGTCA+TGG | + | chr1.2:74627460-74627479 | MS.gene34100:CDS | 55.0% | |
| CTGGGGCAGAAGAATTTGCG+AGG | + | chr1.2:74627513-74627532 | MS.gene34100:CDS | 55.0% | |
| CTTCTTCCTGGCGTTGTGGT+GGG | - | chr1.2:74625822-74625841 | None:intergenic | 55.0% | |
| GAAGGGGAGGCTATCATACG+TGG | + | chr1.2:74628093-74628112 | MS.gene34100:CDS | 55.0% | |
| GGCTCAAGGAGGTGGGAATA+TGG | + | chr1.2:74628304-74628323 | MS.gene34100:CDS | 55.0% | |
| GGTTGGGCTATTGCTGTGCA+TGG | + | chr1.2:74625772-74625791 | MS.gene34100:CDS | 55.0% | |
| TAATCTCCCACCACAACGCC+AGG | + | chr1.2:74625813-74625832 | MS.gene34100:CDS | 55.0% | |
| TGGGCTATTGCTGTGCATGG+TGG | + | chr1.2:74625775-74625794 | MS.gene34100:CDS | 55.0% | |
| TTGGCTTCTTCCTGGCGTTG+TGG | - | chr1.2:74625826-74625845 | None:intergenic | 55.0% | |
| ! | AGTCTCCTGCACTGGTGAAG+GGG | + | chr1.2:74628077-74628096 | MS.gene34100:CDS | 55.0% |
| ! | GAGTCTCCTGCACTGGTGAA+GGG | + | chr1.2:74628076-74628095 | MS.gene34100:CDS | 55.0% |
| ! | TACTGAGGATGGGCTCAAGG+AGG | + | chr1.2:74628293-74628312 | MS.gene34100:CDS | 55.0% |
| ! | TGCTACTGAGGATGGGCTCA+AGG | + | chr1.2:74628290-74628309 | MS.gene34100:CDS | 55.0% |
| ! | TGGCGTTGTGGTGGGAGATT+AGG | - | chr1.2:74625814-74625833 | None:intergenic | 55.0% |
| !! | TGGTGGTGGACAGTGAAGGA+AGG | + | chr1.2:74627950-74627969 | MS.gene34100:CDS | 55.0% |
| !! | TGTGTGGTGGTGGACAGTGA+AGG | + | chr1.2:74627946-74627965 | MS.gene34100:CDS | 55.0% |
| !! | TTTTGGCCTTCAAGAGGCCG+TGG | + | chr1.2:74628158-74628177 | MS.gene34100:CDS | 55.0% |
| CGAAGTCCACGGCCTCTTGA+AGG | - | chr1.2:74628167-74628186 | None:intergenic | 60.0% | |
| CTTCTGCCCCAGAGAAGCCT+AGG | - | chr1.2:74627505-74627524 | None:intergenic | 60.0% | |
| GACTCGCCTATCATAGGCGC+TGG | + | chr1.2:74628030-74628049 | MS.gene34100:CDS | 60.0% | |
| GCGTGAGGTGGCTGCAGTTA+TGG | + | chr1.2:74628125-74628144 | MS.gene34100:CDS | 60.0% | |
| GCTGCTGCAACATCAACCGG+AGG | + | chr1.2:74627976-74627995 | MS.gene34100:CDS | 60.0% | |
| GCTTCTTCCTGGCGTTGTGG+TGG | - | chr1.2:74625823-74625842 | None:intergenic | 60.0% | |
| GTGTGTGGAGTCTCCTGCAC+TGG | + | chr1.2:74628069-74628088 | MS.gene34100:CDS | 60.0% | |
| ! | ATTGCTGTGCATGGTGGCGC+AGG | + | chr1.2:74625781-74625800 | MS.gene34100:CDS | 60.0% |
| ! | GAGGATGGGCTCAAGGAGGT+GGG | + | chr1.2:74628297-74628316 | MS.gene34100:CDS | 60.0% |
| ! | GGAGTCTCCTGCACTGGTGA+AGG | + | chr1.2:74628075-74628094 | MS.gene34100:CDS | 60.0% |
| ! | TGAGGATGGGCTCAAGGAGG+TGG | + | chr1.2:74628296-74628315 | MS.gene34100:CDS | 60.0% |
| ACCACACACCCGACGGTCTC+TGG | - | chr1.2:74627934-74627953 | None:intergenic | 65.0% | |
| ACGTGGCACTCTTGCGCGTG+AGG | + | chr1.2:74628110-74628129 | MS.gene34100:CDS | 65.0% | |
| AGAGACCGTCGGGTGTGTGG+TGG | + | chr1.2:74627933-74627952 | MS.gene34100:CDS | 65.0% | |
| AGCCTCCCCTTCACCAGTGC+AGG | - | chr1.2:74628085-74628104 | None:intergenic | 65.0% | |
| GTCCACCACCACACACCCGA+CGG | - | chr1.2:74627941-74627960 | None:intergenic | 65.0% | |
| TCCAGAGACCGTCGGGTGTG+TGG | + | chr1.2:74627930-74627949 | MS.gene34100:CDS | 65.0% | |
| TGGCACTCTTGCGCGTGAGG+TGG | + | chr1.2:74628113-74628132 | MS.gene34100:CDS | 65.0% | |
| ! | CTCCTGCACTGGTGAAGGGG+AGG | + | chr1.2:74628080-74628099 | MS.gene34100:CDS | 65.0% |
| ! | TGTGCATGGTGGCGCAGGTG+TGG | + | chr1.2:74625786-74625805 | MS.gene34100:CDS | 65.0% |
| GACCGTCGGGTGTGTGGTGG+TGG | + | chr1.2:74627936-74627955 | MS.gene34100:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 74625766 | 74628332 | 74625766 | ID=MS.gene34100 |
| chr1.2 | mRNA | 74625766 | 74628332 | 74625766 | ID=MS.gene34100.t1;Parent=MS.gene34100 |
| chr1.2 | exon | 74625766 | 74625927 | 74625766 | ID=MS.gene34100.t1.exon1;Parent=MS.gene34100.t1 |
| chr1.2 | CDS | 74625766 | 74625927 | 74625766 | ID=cds.MS.gene34100.t1;Parent=MS.gene34100.t1 |
| chr1.2 | exon | 74627308 | 74627541 | 74627308 | ID=MS.gene34100.t1.exon2;Parent=MS.gene34100.t1 |
| chr1.2 | CDS | 74627308 | 74627541 | 74627308 | ID=cds.MS.gene34100.t1;Parent=MS.gene34100.t1 |
| chr1.2 | exon | 74627649 | 74627735 | 74627649 | ID=MS.gene34100.t1.exon3;Parent=MS.gene34100.t1 |
| chr1.2 | CDS | 74627649 | 74627735 | 74627649 | ID=cds.MS.gene34100.t1;Parent=MS.gene34100.t1 |
| chr1.2 | exon | 74627853 | 74628332 | 74627853 | ID=MS.gene34100.t1.exon4;Parent=MS.gene34100.t1 |
| chr1.2 | CDS | 74627853 | 74628332 | 74627853 | ID=cds.MS.gene34100.t1;Parent=MS.gene34100.t1 |
| Gene Sequence |
| Protein sequence |
