Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34281.t1 | XP_003604116.1 | 96 | 302 | 12 | 0 | 1 | 302 | 68 | 369 | 1.80E-166 | 595.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34281.t1 | G7JUF2 | 96.0 | 302 | 12 | 0 | 1 | 302 | 68 | 369 | 1.3e-166 | 595.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene34281 | 0.812138 | 4.93E-51 | -1.69E-46 |
| MS.gene049396 | MS.gene34281 | 0.806049 | 9.93E-50 | -1.69E-46 |
| MS.gene050444 | MS.gene34281 | 0.807743 | 4.36E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene34281 | 0.81891 | 1.53E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene34281 | 0.810384 | 1.18E-50 | -1.69E-46 |
| MS.gene052872 | MS.gene34281 | 0.80742 | 5.10E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene34281 | 0.806063 | 9.87E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene34281 | 0.819513 | 1.12E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene34281 | 0.813345 | 2.68E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene34281 | 0.821697 | 3.52E-53 | -1.69E-46 |
| MS.gene056387 | MS.gene34281 | 0.801801 | 7.59E-49 | -1.69E-46 |
| MS.gene056487 | MS.gene34281 | 0.804624 | 1.98E-49 | -1.69E-46 |
| MS.gene057926 | MS.gene34281 | 0.819132 | 1.36E-52 | -1.69E-46 |
| MS.gene058459 | MS.gene34281 | 0.81944 | 1.16E-52 | -1.69E-46 |
| MS.gene05913 | MS.gene34281 | 0.835914 | 1.27E-56 | -1.69E-46 |
| MS.gene059865 | MS.gene34281 | 0.802011 | 6.87E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene34281 | 0.805178 | 1.51E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene34281 | 0.822075 | 2.88E-53 | -1.69E-46 |
| MS.gene060981 | MS.gene34281 | 0.817053 | 4.02E-52 | -1.69E-46 |
| MS.gene061041 | MS.gene34281 | 0.833869 | 4.16E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTAGGTTTGCAGGATT+TGG | 0.251778 | 4.3:-89682506 | None:intergenic |
| ATCAGTAACCTTAGGTTTGC+AGG | 0.256518 | 4.3:-89682512 | None:intergenic |
| ACTATTGGCTAACAACTTCT+TGG | 0.298347 | 4.3:-89685574 | None:intergenic |
| ATCTAAATGAGAATGCTAAA+TGG | 0.314684 | 4.3:+89682440 | MS.gene34281:CDS |
| CCAATAGTGTGCTGCTTGTA+GGG | 0.339546 | 4.3:+89685589 | MS.gene34281:CDS |
| GACCGTGTTCAATAATATTT+CGG | 0.348371 | 4.3:+89683617 | MS.gene34281:CDS |
| CTAGAGAATACGTGCTAACT+TGG | 0.350444 | 4.3:+89683784 | MS.gene34281:CDS |
| GCCAATAGTGTGCTGCTTGT+AGG | 0.372270 | 4.3:+89685588 | MS.gene34281:CDS |
| TTCAGTCAATTTAATGCAAA+AGG | 0.385709 | 4.3:+89684870 | MS.gene34281:CDS |
| TTAGGAATGTGAACATACTT+TGG | 0.398158 | 4.3:+89684305 | MS.gene34281:intron |
| GACTGAACTGTTAACTGAAC+TGG | 0.403147 | 4.3:-89684854 | None:intergenic |
| GAATGTGGAGATGGCAAAAC+TGG | 0.403229 | 4.3:+89684750 | MS.gene34281:CDS |
| TCTAAATGAGAATGCTAAAT+GGG | 0.425962 | 4.3:+89682441 | MS.gene34281:CDS |
| TTGGAAATTGTGGGAGGGGA+AGG | 0.429664 | 4.3:+89683803 | MS.gene34281:CDS |
| CCCTACAAGCAGCACACTAT+TGG | 0.441576 | 4.3:-89685589 | None:intergenic |
| TACAAAGCTCCATATGCCTT+TGG | 0.455824 | 4.3:-89684779 | None:intergenic |
| ACGTGCTAACTTGGAAATTG+TGG | 0.456235 | 4.3:+89683793 | MS.gene34281:CDS |
| CAAGTTAGCACGTATTCTCT+AGG | 0.463689 | 4.3:-89683783 | None:intergenic |
| AAATCTGATGGTTCTGAAGT+TGG | 0.471935 | 4.3:+89683729 | MS.gene34281:CDS |
| TGTATAGGTACCGGCTTGCT+TGG | 0.473815 | 4.3:+89685455 | MS.gene34281:intron |
| TATTCTCTAGGTTTCAAAAG+AGG | 0.479731 | 4.3:-89683771 | None:intergenic |
| GTTTGATCATGAATGATAGT+AGG | 0.489865 | 4.3:-89685510 | None:intergenic |
| CGTGCTAACTTGGAAATTGT+GGG | 0.500606 | 4.3:+89683794 | MS.gene34281:CDS |
| CAATGACTACAGAAAACAAT+GGG | 0.504178 | 4.3:+89683668 | MS.gene34281:CDS |
| CACGGCAGAATAAATATGTA+CGG | 0.508876 | 4.3:+89684331 | MS.gene34281:CDS |
| CTAGGTGCTAAAGTTGCAAT+GGG | 0.510640 | 4.3:+89685645 | MS.gene34281:CDS |
| ATGTTTCATCAAGAAGATGC+TGG | 0.515286 | 4.3:+89684724 | MS.gene34281:CDS |
| CCTAGGTGCTAAAGTTGCAA+TGG | 0.518576 | 4.3:+89685644 | MS.gene34281:CDS |
| TAACTTGGAAATTGTGGGAG+GGG | 0.526844 | 4.3:+89683799 | MS.gene34281:CDS |
| ATTCTCTAGGTTTCAAAAGA+GGG | 0.532340 | 4.3:-89683770 | None:intergenic |
| TTGGCTAACAACTTCTTGGA+TGG | 0.533883 | 4.3:-89685570 | None:intergenic |
| TGCCAAATCCTGCAAACCTA+AGG | 0.543122 | 4.3:+89682504 | MS.gene34281:CDS |
| TCACGTGGTCACTCTAGCCT+AGG | 0.548358 | 4.3:+89685627 | MS.gene34281:CDS |
| GAAGATACTCTGCTGCAAGC+TGG | 0.548902 | 4.3:+89684824 | MS.gene34281:CDS |
| ATCTCACAGGCATTTCTACC+AGG | 0.552255 | 4.3:-89684697 | None:intergenic |
| GGTTGAGCACAATCAACTGC+AGG | 0.572742 | 4.3:+89683701 | MS.gene34281:CDS |
| ATGAAACATTGTGATCTCAC+AGG | 0.577864 | 4.3:-89684710 | None:intergenic |
| ATGGAGCTTTGTATGCAAGA+TGG | 0.577968 | 4.3:+89684789 | MS.gene34281:CDS |
| CCATTGCAACTTTAGCACCT+AGG | 0.588447 | 4.3:-89685644 | None:intergenic |
| CTGCAGGTGGACAAATCTGA+TGG | 0.593077 | 4.3:+89683717 | MS.gene34281:CDS |
| ACGGCAGAATAAATATGTAC+GGG | 0.595469 | 4.3:+89684332 | MS.gene34281:CDS |
| CGTACATATTTATTCTGCCG+TGG | 0.595658 | 4.3:-89684330 | None:intergenic |
| GTGAACATACTTTGGCTCCA+CGG | 0.602406 | 4.3:+89684313 | MS.gene34281:CDS |
| CTAACTTGGAAATTGTGGGA+GGG | 0.610138 | 4.3:+89683798 | MS.gene34281:CDS |
| GTCACACTCAAATATCTCAA+GGG | 0.610413 | 4.3:-89683597 | None:intergenic |
| TGCTGGTTTGAATGTGGAGA+TGG | 0.613421 | 4.3:+89684741 | MS.gene34281:CDS |
| CAATAGTGTGCTGCTTGTAG+GGG | 0.617598 | 4.3:+89685590 | MS.gene34281:CDS |
| GGTCACACTCAAATATCTCA+AGG | 0.625085 | 4.3:-89683598 | None:intergenic |
| GTACTAGATTCCAAGCAAGC+CGG | 0.626519 | 4.3:-89685465 | None:intergenic |
| AATAGTGTGCTGCTTGTAGG+GGG | 0.627038 | 4.3:+89685591 | MS.gene34281:CDS |
| AGAAGATGCTGGTTTGAATG+TGG | 0.629014 | 4.3:+89684735 | MS.gene34281:CDS |
| TTCATTTGTCACAATCTCCG+AGG | 0.636784 | 4.3:-89682383 | None:intergenic |
| TGAGCACAATCAACTGCAGG+TGG | 0.636879 | 4.3:+89683704 | MS.gene34281:CDS |
| TGTCATCAATTGCAGAACCT+CGG | 0.647597 | 4.3:+89682366 | None:intergenic |
| GATGCTAAGAAACTTCTACA+TGG | 0.648028 | 4.3:+89683644 | MS.gene34281:CDS |
| TCACACTCAAATATCTCAAG+GGG | 0.652492 | 4.3:-89683596 | None:intergenic |
| GCTAACTTGGAAATTGTGGG+AGG | 0.653551 | 4.3:+89683797 | MS.gene34281:CDS |
| ACAATGACTACAGAAAACAA+TGG | 0.653588 | 4.3:+89683667 | MS.gene34281:CDS |
| AGCCGAAATATTATTGAACA+CGG | 0.666524 | 4.3:-89683619 | None:intergenic |
| AAGTGCGTGTGATATCAAGA+AGG | 0.674822 | 4.3:+89685547 | MS.gene34281:CDS |
| TCTGGCTGGCGAATAAGACA+AGG | 0.684761 | 4.3:+89684369 | MS.gene34281:CDS |
| AAAACAATGGGATAAGACAG+TGG | 0.709971 | 4.3:+89683680 | MS.gene34281:CDS |
| GGTGCAATATGTCTGTCACG+TGG | 0.761442 | 4.3:+89685612 | MS.gene34281:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTATTTATAAATTAAA+TGG | + | chr4.3:89683176-89683195 | MS.gene34281:intron | 0.0% |
| !! | AAATTAAATCAATTAATCAA+TGG | - | chr4.3:89685310-89685329 | None:intergenic | 10.0% |
| !! | AGTAATTAAAATTTAAAAGT+TGG | - | chr4.3:89685086-89685105 | None:intergenic | 10.0% |
| !!! | TATAATTAGTTATATGTTTT+AGG | + | chr4.3:89683455-89683474 | MS.gene34281:intron | 10.0% |
| !!! | TGTAATTTTAAATTTGAATT+TGG | + | chr4.3:89683512-89683531 | MS.gene34281:intron | 10.0% |
| !! | ACAACGAAATATAAATAAAA+AGG | - | chr4.3:89684609-89684628 | None:intergenic | 15.0% |
| !! | GACATTATTATAATTTATCT+TGG | + | chr4.3:89682557-89682576 | MS.gene34281:intron | 15.0% |
| !!! | AAATTTAAAAGTTGGTTTAT+TGG | - | chr4.3:89685078-89685097 | None:intergenic | 15.0% |
| !!! | AACATTTTACTGTTATATAA+AGG | + | chr4.3:89683830-89683849 | MS.gene34281:CDS | 15.0% |
| !!! | AATTTTTTTCTTTTCATCTT+TGG | + | chr4.3:89684272-89684291 | MS.gene34281:intron | 15.0% |
| !!! | ATTAGAAACAATATTTTAAC+TGG | + | chr4.3:89683315-89683334 | MS.gene34281:intron | 15.0% |
| !!! | ATTTATATTTTTCCTTAACT+TGG | - | chr4.3:89682813-89682832 | None:intergenic | 15.0% |
| !! | ATATTCCCATAAAAAATTCA+CGG | - | chr4.3:89684422-89684441 | None:intergenic | 20.0% |
| !! | CATTTCAAGAATGATATTAA+AGG | - | chr4.3:89683111-89683130 | None:intergenic | 20.0% |
| !! | GGAGTTTAAATTTAATTCTT+TGG | + | chr4.3:89683476-89683495 | MS.gene34281:intron | 20.0% |
| !! | TCAAAATAAAATGCTAAAGA+TGG | + | chr4.3:89685025-89685044 | MS.gene34281:intron | 20.0% |
| !! | TGCCTTGTAAATTATAATTA+CGG | + | chr4.3:89684970-89684989 | MS.gene34281:intron | 20.0% |
| !! | TTAAGTTAAATGAAAGAATG+CGG | - | chr4.3:89685194-89685213 | None:intergenic | 20.0% |
| !! | TTCTTGATCAATATATTTCT+AGG | - | chr4.3:89684046-89684065 | None:intergenic | 20.0% |
| !!! | AAATGGAAGATATTTTTTGT+TGG | + | chr4.3:89683193-89683212 | MS.gene34281:intron | 20.0% |
| !!! | AATATTGTTTCTAATCATCT+TGG | - | chr4.3:89683310-89683329 | None:intergenic | 20.0% |
| !!! | ATTTAAAATTACATGCTTGA+AGG | - | chr4.3:89683505-89683524 | None:intergenic | 20.0% |
| !!! | CTTTTTTGAATAAACATGTT+TGG | - | chr4.3:89683378-89683397 | None:intergenic | 20.0% |
| !!! | GAAGTTTTTAATGATGATTT+TGG | + | chr4.3:89682411-89682430 | MS.gene34281:CDS | 20.0% |
| !!! | TCAACATTTAATGTATTTTC+TGG | + | chr4.3:89684919-89684938 | MS.gene34281:intron | 20.0% |
| !!! | TTTTTAATGATGATTTTGGA+TGG | + | chr4.3:89682415-89682434 | MS.gene34281:CDS | 20.0% |
| !!! | TTTTTCCGTGAATTTTTTAT+GGG | + | chr4.3:89684414-89684433 | MS.gene34281:intron | 20.0% |
| !!! | TTTTTCTATCCTCATAAAAA+TGG | + | chr4.3:89684461-89684480 | MS.gene34281:intron | 20.0% |
| ! | AAAATTTGAATGAACTATGC+TGG | + | chr4.3:89683082-89683101 | MS.gene34281:intron | 25.0% |
| ! | ACTCAATGAAAAATTTCCAT+AGG | - | chr4.3:89685245-89685264 | None:intergenic | 25.0% |
| ! | AGAAATTAGAGATTAGAACT+TGG | + | chr4.3:89684062-89684081 | MS.gene34281:intron | 25.0% |
| ! | ATCATATAACAATTCAAGCT+TGG | - | chr4.3:89682638-89682657 | None:intergenic | 25.0% |
| ! | ATCTAAATGAGAATGCTAAA+TGG | + | chr4.3:89682440-89682459 | MS.gene34281:CDS | 25.0% |
| ! | CTCAATGAAAAATTTCCATA+GGG | - | chr4.3:89685244-89685263 | None:intergenic | 25.0% |
| ! | GCCTTGTAAATTATAATTAC+GGG | + | chr4.3:89684971-89684990 | MS.gene34281:intron | 25.0% |
| ! | TCCCGTAATTATAATTTACA+AGG | - | chr4.3:89684975-89684994 | None:intergenic | 25.0% |
| ! | TCTAAATGAGAATGCTAAAT+GGG | + | chr4.3:89682441-89682460 | MS.gene34281:CDS | 25.0% |
| ! | TGATAATAGTGATATACTAG+TGG | - | chr4.3:89684117-89684136 | None:intergenic | 25.0% |
| ! | TGTGCAAATATTTGAGAATA+TGG | - | chr4.3:89684147-89684166 | None:intergenic | 25.0% |
| ! | TTCAGTCAATTTAATGCAAA+AGG | + | chr4.3:89684870-89684889 | MS.gene34281:CDS | 25.0% |
| !! | AATCTATTTTGTCCAAGTTA+AGG | + | chr4.3:89682798-89682817 | MS.gene34281:intron | 25.0% |
| !! | GGATTGTTTGTTAGTTATAT+CGG | - | chr4.3:89685431-89685450 | None:intergenic | 25.0% |
| !! | GTTTTTCCGTGAATTTTTTA+TGG | + | chr4.3:89684413-89684432 | MS.gene34281:intron | 25.0% |
| !! | TTCTCATTCTGTACATATTT+TGG | + | chr4.3:89684183-89684202 | MS.gene34281:intron | 25.0% |
| !!! | TAAGAAAAATTGACTTGTGT+AGG | - | chr4.3:89683437-89683456 | None:intergenic | 25.0% |
| AAAATAAATAGCCTACCCTA+TGG | + | chr4.3:89685226-89685245 | MS.gene34281:intron | 30.0% | |
| AAAGGTAATACATCCGATTA+TGG | + | chr4.3:89683848-89683867 | MS.gene34281:intron | 30.0% | |
| AAATACAAGTTTAGGGACAA+AGG | + | chr4.3:89683041-89683060 | MS.gene34281:intron | 30.0% | |
| AAGGTAATACATCCGATTAT+GGG | + | chr4.3:89683849-89683868 | MS.gene34281:intron | 30.0% | |
| AATTCTTCTTGTTCAATGAC+AGG | - | chr4.3:89684021-89684040 | None:intergenic | 30.0% | |
| ACAATGACTACAGAAAACAA+TGG | + | chr4.3:89683667-89683686 | MS.gene34281:CDS | 30.0% | |
| ACATGTGCATTAACACTAAA+AGG | - | chr4.3:89683907-89683926 | None:intergenic | 30.0% | |
| ACATTGTGCAAGTTAGAAAA+AGG | - | chr4.3:89682684-89682703 | None:intergenic | 30.0% | |
| ACCTCCTAAAATACAAGTTT+AGG | + | chr4.3:89683033-89683052 | MS.gene34281:intron | 30.0% | |
| AGCCGAAATATTATTGAACA+CGG | - | chr4.3:89683622-89683641 | None:intergenic | 30.0% | |
| AGGATAAAATCAGTAACCTT+AGG | - | chr4.3:89682523-89682542 | None:intergenic | 30.0% | |
| AGTTAGAAAAAGGGAAAACA+TGG | - | chr4.3:89682674-89682693 | None:intergenic | 30.0% | |
| ATAACAATTCAAGCTTGGTA+TGG | - | chr4.3:89682633-89682652 | None:intergenic | 30.0% | |
| ATATTTGAGAATATGGTGAC+TGG | - | chr4.3:89684140-89684159 | None:intergenic | 30.0% | |
| ATGAAAAATTTCCATAGGGT+AGG | - | chr4.3:89685240-89685259 | None:intergenic | 30.0% | |
| ATTCTCTAGGTTTCAAAAGA+GGG | - | chr4.3:89683773-89683792 | None:intergenic | 30.0% | |
| CAATGACTACAGAAAACAAT+GGG | + | chr4.3:89683668-89683687 | MS.gene34281:CDS | 30.0% | |
| CATTGTGCAAGTTAGAAAAA+GGG | - | chr4.3:89682683-89682702 | None:intergenic | 30.0% | |
| CCTCCTAAAATACAAGTTTA+GGG | + | chr4.3:89683034-89683053 | MS.gene34281:intron | 30.0% | |
| GACCGTGTTCAATAATATTT+CGG | + | chr4.3:89683617-89683636 | MS.gene34281:CDS | 30.0% | |
| GCAATCATTGCTTGAAAAAA+AGG | - | chr4.3:89684246-89684265 | None:intergenic | 30.0% | |
| GTTAGAAAAAGGGAAAACAT+GGG | - | chr4.3:89682673-89682692 | None:intergenic | 30.0% | |
| GTTTGATCATGAATGATAGT+AGG | - | chr4.3:89685513-89685532 | None:intergenic | 30.0% | |
| TAATTTATCTTGGCTACTCT+TGG | + | chr4.3:89682567-89682586 | MS.gene34281:intron | 30.0% | |
| TATTCTCTAGGTTTCAAAAG+AGG | - | chr4.3:89683774-89683793 | None:intergenic | 30.0% | |
| TCATTGCTTGAAAAAAAGGT+AGG | - | chr4.3:89684242-89684261 | None:intergenic | 30.0% | |
| TCTCATATGGATGTTGTTAT+GGG | + | chr4.3:89683953-89683972 | MS.gene34281:intron | 30.0% | |
| TTAACCTCCATAAAAATGCA+CGG | - | chr4.3:89684571-89684590 | None:intergenic | 30.0% | |
| TTAAGCTACATATCGCAATT+AGG | - | chr4.3:89685400-89685419 | None:intergenic | 30.0% | |
| TTAGAAAAAGGGAAAACATG+GGG | - | chr4.3:89682672-89682691 | None:intergenic | 30.0% | |
| TTAGGAATGTGAACATACTT+TGG | + | chr4.3:89684305-89684324 | MS.gene34281:intron | 30.0% | |
| TTCTCATATGGATGTTGTTA+TGG | + | chr4.3:89683952-89683971 | MS.gene34281:intron | 30.0% | |
| TTTATTGGTAAACGACGTAA+CGG | - | chr4.3:89685063-89685082 | None:intergenic | 30.0% | |
| ! | TCTTTTGTGTGTATCATTCT+TGG | + | chr4.3:89685336-89685355 | MS.gene34281:intron | 30.0% |
| ! | TGTATTTCCGTGCATTTTTA+TGG | + | chr4.3:89684561-89684580 | MS.gene34281:intron | 30.0% |
| ! | TGTCCCTAAACTTGTATTTT+AGG | - | chr4.3:89683040-89683059 | None:intergenic | 30.0% |
| !! | ACTGATTTTATCCTTCAACT+GGG | + | chr4.3:89682529-89682548 | MS.gene34281:intron | 30.0% |
| !! | AGATCTTCACCATTTTTATG+AGG | - | chr4.3:89684473-89684492 | None:intergenic | 30.0% |
| !!! | ATTTTATTGTTGTTTCTCCC+TGG | + | chr4.3:89683559-89683578 | MS.gene34281:intron | 30.0% |
| !!! | ATTTTTTGTTGGTGGTGTAA+GGG | + | chr4.3:89683204-89683223 | MS.gene34281:intron | 30.0% |
| !!! | TACTGATTTTATCCTTCAAC+TGG | + | chr4.3:89682528-89682547 | MS.gene34281:intron | 30.0% |
| !!! | TATTTTTTGTTGGTGGTGTA+AGG | + | chr4.3:89683203-89683222 | MS.gene34281:intron | 30.0% |
| !!! | TGGAAGATATTTTTTGTTGG+TGG | + | chr4.3:89683196-89683215 | MS.gene34281:intron | 30.0% |
| AAAACAATGGGATAAGACAG+TGG | + | chr4.3:89683680-89683699 | MS.gene34281:CDS | 35.0% | |
| AACAATAGCTCAACACCTAA+AGG | - | chr4.3:89683236-89683255 | None:intergenic | 35.0% | |
| ACAAACAATCCCTTGTGTAT+AGG | + | chr4.3:89685440-89685459 | MS.gene34281:intron | 35.0% | |
| ACAATCAACCTATCAAGCAT+GGG | - | chr4.3:89683408-89683427 | None:intergenic | 35.0% | |
| ACGGCAGAATAAATATGTAC+GGG | + | chr4.3:89684332-89684351 | MS.gene34281:CDS | 35.0% | |
| AGGTAATACATCCGATTATG+GGG | + | chr4.3:89683850-89683869 | MS.gene34281:intron | 35.0% | |
| ATCTTTGGTGAAACCTTGTT+AGG | + | chr4.3:89684287-89684306 | MS.gene34281:intron | 35.0% | |
| ATGAAACATTGTGATCTCAC+AGG | - | chr4.3:89684713-89684732 | None:intergenic | 35.0% | |
| ATGTGTCAAACACTCTTAAC+CGG | - | chr4.3:89683345-89683364 | None:intergenic | 35.0% | |
| ATGTTTCATCAAGAAGATGC+TGG | + | chr4.3:89684724-89684743 | MS.gene34281:CDS | 35.0% | |
| CACGGCAGAATAAATATGTA+CGG | + | chr4.3:89684331-89684350 | MS.gene34281:CDS | 35.0% | |
| GATGCTAAGAAACTTCTACA+TGG | + | chr4.3:89683644-89683663 | MS.gene34281:CDS | 35.0% | |
| GCACTTGAAATGAAAGAGAT+CGG | - | chr4.3:89685164-89685183 | None:intergenic | 35.0% | |
| GTATGTTCACATTCCTAACA+AGG | - | chr4.3:89684303-89684322 | None:intergenic | 35.0% | |
| GTCACACTCAAATATCTCAA+GGG | - | chr4.3:89683600-89683619 | None:intergenic | 35.0% | |
| TACAGAATGAGAAGTCAGAA+CGG | - | chr4.3:89684176-89684195 | None:intergenic | 35.0% | |
| TATCAATGCAACCCCATAAT+CGG | - | chr4.3:89683864-89683883 | None:intergenic | 35.0% | |
| TCACAAAACAGTCATGTCAT+AGG | - | chr4.3:89684659-89684678 | None:intergenic | 35.0% | |
| TCACACTCAAATATCTCAAG+GGG | - | chr4.3:89683599-89683618 | None:intergenic | 35.0% | |
| ! | AATTTACAAGGCATCAGCAT+GGG | - | chr4.3:89684963-89684982 | None:intergenic | 35.0% |
| ! | ACTATTGGCTAACAACTTCT+TGG | - | chr4.3:89685577-89685596 | None:intergenic | 35.0% |
| ! | ATTTCCGTGCATTTTTATGG+AGG | + | chr4.3:89684564-89684583 | MS.gene34281:intron | 35.0% |
| ! | CTGATTTTATCCTTCAACTG+GGG | + | chr4.3:89682530-89682549 | MS.gene34281:intron | 35.0% |
| ! | TAATTTACAAGGCATCAGCA+TGG | - | chr4.3:89684964-89684983 | None:intergenic | 35.0% |
| !! | AAATCTGATGGTTCTGAAGT+TGG | + | chr4.3:89683729-89683748 | MS.gene34281:CDS | 35.0% |
| !! | CCCTAAACTTGTATTTTAGG+AGG | - | chr4.3:89683037-89683056 | None:intergenic | 35.0% |
| !!! | CAATATTTTAACTGGACACC+CGG | + | chr4.3:89683323-89683342 | MS.gene34281:intron | 35.0% |
| AACCTTAGGTTTGCAGGATT+TGG | - | chr4.3:89682509-89682528 | None:intergenic | 40.0% | |
| AAGTGCGTGTGATATCAAGA+AGG | + | chr4.3:89685547-89685566 | MS.gene34281:CDS | 40.0% | |
| AATCCCTTGTGTATAGGTAC+CGG | + | chr4.3:89685446-89685465 | MS.gene34281:intron | 40.0% | |
| AATGTCTATACCCCAGTTGA+AGG | - | chr4.3:89682543-89682562 | None:intergenic | 40.0% | |
| ACGTGCTAACTTGGAAATTG+TGG | + | chr4.3:89683793-89683812 | MS.gene34281:CDS | 40.0% | |
| ATCAGCATGGGAAAATTGGA+AGG | - | chr4.3:89684951-89684970 | None:intergenic | 40.0% | |
| ATCAGTAACCTTAGGTTTGC+AGG | - | chr4.3:89682515-89682534 | None:intergenic | 40.0% | |
| CAAGTTAGCACGTATTCTCT+AGG | - | chr4.3:89683786-89683805 | None:intergenic | 40.0% | |
| CGTACATATTTATTCTGCCG+TGG | - | chr4.3:89684333-89684352 | None:intergenic | 40.0% | |
| CGTGCTAACTTGGAAATTGT+GGG | + | chr4.3:89683794-89683813 | MS.gene34281:CDS | 40.0% | |
| CTAACTTGGAAATTGTGGGA+GGG | + | chr4.3:89683798-89683817 | MS.gene34281:CDS | 40.0% | |
| CTAGAGAATACGTGCTAACT+TGG | + | chr4.3:89683784-89683803 | MS.gene34281:CDS | 40.0% | |
| CTAGGTGCTAAAGTTGCAAT+GGG | + | chr4.3:89685645-89685664 | MS.gene34281:CDS | 40.0% | |
| CTGCATTTATGTCAGTGACT+AGG | - | chr4.3:89682716-89682735 | None:intergenic | 40.0% | |
| CTGGCGATTATTATAGTACC+TGG | + | chr4.3:89684679-89684698 | MS.gene34281:intron | 40.0% | |
| GACAATCAACCTATCAAGCA+TGG | - | chr4.3:89683409-89683428 | None:intergenic | 40.0% | |
| GACTGAACTGTTAACTGAAC+TGG | - | chr4.3:89684857-89684876 | None:intergenic | 40.0% | |
| GCATGATGTATAACGTAGAC+AGG | - | chr4.3:89685110-89685129 | None:intergenic | 40.0% | |
| GGTCACACTCAAATATCTCA+AGG | - | chr4.3:89683601-89683620 | None:intergenic | 40.0% | |
| GTTTGTGTCTCAGCTGTATT+TGG | + | chr4.3:89683277-89683296 | MS.gene34281:intron | 40.0% | |
| TAACTTGGAAATTGTGGGAG+GGG | + | chr4.3:89683799-89683818 | MS.gene34281:CDS | 40.0% | |
| TACAAAGCTCCATATGCCTT+TGG | - | chr4.3:89684782-89684801 | None:intergenic | 40.0% | |
| TAGGGACAAAGGATGAATAG+AGG | + | chr4.3:89683052-89683071 | MS.gene34281:intron | 40.0% | |
| TCAACTAAATGCTGCTCAGA+TGG | - | chr4.3:89682939-89682958 | None:intergenic | 40.0% | |
| TGTGTCAAACACTCTTAACC+GGG | - | chr4.3:89683344-89683363 | None:intergenic | 40.0% | |
| TTCATTTGTCACAATCTCCG+AGG | - | chr4.3:89682386-89682405 | None:intergenic | 40.0% | |
| TTCCTGCAACTGTGTTCTTT+GGG | + | chr4.3:89685278-89685297 | MS.gene34281:intron | 40.0% | |
| TTGGCTAACAACTTCTTGGA+TGG | - | chr4.3:89685573-89685592 | None:intergenic | 40.0% | |
| TTTCCTGCAACTGTGTTCTT+TGG | + | chr4.3:89685277-89685296 | MS.gene34281:intron | 40.0% | |
| ! | AATGACAGGACAAAAAGTGC+AGG | - | chr4.3:89684007-89684026 | None:intergenic | 40.0% |
| ! | ATGACAGGACAAAAAGTGCA+GGG | - | chr4.3:89684006-89684025 | None:intergenic | 40.0% |
| ! | ATGGAGCTTTGTATGCAAGA+TGG | + | chr4.3:89684789-89684808 | MS.gene34281:CDS | 40.0% |
| ! | GCAAAACTGGCATTTTCCAA+AGG | + | chr4.3:89684763-89684782 | MS.gene34281:CDS | 40.0% |
| ! | TCTAACTTGCACAATGTGCT+GGG | + | chr4.3:89682687-89682706 | MS.gene34281:intron | 40.0% |
| ! | TGACATGACTGTTTTGTGAC+TGG | + | chr4.3:89684660-89684679 | MS.gene34281:intron | 40.0% |
| ! | TTCTAACTTGCACAATGTGC+TGG | + | chr4.3:89682686-89682705 | MS.gene34281:intron | 40.0% |
| !! | AGAAGATGCTGGTTTGAATG+TGG | + | chr4.3:89684735-89684754 | MS.gene34281:CDS | 40.0% |
| !! | TAGGTGTTGAGCTATTGTTG+AGG | + | chr4.3:89683237-89683256 | MS.gene34281:intron | 40.0% |
| !! | TGGCATTTTCCAAAGGCATA+TGG | + | chr4.3:89684770-89684789 | MS.gene34281:CDS | 40.0% |
| !! | TTGAGTTTTTCAGATCTGGC+TGG | + | chr4.3:89684355-89684374 | MS.gene34281:CDS | 40.0% |
| AAGCCGGTACCTATACACAA+GGG | - | chr4.3:89685452-89685471 | None:intergenic | 45.0% | |
| AGGCATCAGCATGGGAAAAT+TGG | - | chr4.3:89684955-89684974 | None:intergenic | 45.0% | |
| ATCTCACAGGCATTTCTACC+AGG | - | chr4.3:89684700-89684719 | None:intergenic | 45.0% | |
| CCATTGCAACTTTAGCACCT+AGG | - | chr4.3:89685647-89685666 | None:intergenic | 45.0% | |
| CCTAGGTGCTAAAGTTGCAA+TGG | + | chr4.3:89685644-89685663 | MS.gene34281:CDS | 45.0% | |
| CTGAGCAGCATTTAGTTGAG+AGG | + | chr4.3:89682940-89682959 | MS.gene34281:intron | 45.0% | |
| GAATGTGGAGATGGCAAAAC+TGG | + | chr4.3:89684750-89684769 | MS.gene34281:CDS | 45.0% | |
| GCTAACTTGGAAATTGTGGG+AGG | + | chr4.3:89683797-89683816 | MS.gene34281:CDS | 45.0% | |
| GCTACATATCGCAATTAGGC+TGG | - | chr4.3:89685396-89685415 | None:intergenic | 45.0% | |
| GTACTAGATTCCAAGCAAGC+CGG | - | chr4.3:89685468-89685487 | None:intergenic | 45.0% | |
| GTGTAAGGGTTGTGTCCTTT+AGG | + | chr4.3:89683218-89683237 | MS.gene34281:intron | 45.0% | |
| TAGTGAACAAAGTGTGCCAG+AGG | - | chr4.3:89682750-89682769 | None:intergenic | 45.0% | |
| TGCCAAATCCTGCAAACCTA+AGG | + | chr4.3:89682504-89682523 | MS.gene34281:CDS | 45.0% | |
| TTCCCAAAGAACACAGTTGC+AGG | - | chr4.3:89685283-89685302 | None:intergenic | 45.0% | |
| TTCGCGACTGCTTTCTCATA+TGG | + | chr4.3:89683940-89683959 | MS.gene34281:intron | 45.0% | |
| ! | GTGAACATACTTTGGCTCCA+CGG | + | chr4.3:89684313-89684332 | MS.gene34281:CDS | 45.0% |
| ! | TGACAGGACAAAAAGTGCAG+GGG | - | chr4.3:89684005-89684024 | None:intergenic | 45.0% |
| !! | AATAGTGTGCTGCTTGTAGG+GGG | + | chr4.3:89685591-89685610 | MS.gene34281:CDS | 45.0% |
| !! | AATTACGGGAGTGTTGCTTG+AGG | + | chr4.3:89684985-89685004 | MS.gene34281:intron | 45.0% |
| !! | CAATAGTGTGCTGCTTGTAG+GGG | + | chr4.3:89685590-89685609 | MS.gene34281:CDS | 45.0% |
| !! | CCAATAGTGTGCTGCTTGTA+GGG | + | chr4.3:89685589-89685608 | MS.gene34281:CDS | 45.0% |
| !! | CGGGTTGAGTTTTTCAGATC+TGG | + | chr4.3:89684351-89684370 | MS.gene34281:CDS | 45.0% |
| !! | TCTCAGCTGTATTTGGTGCA+TGG | + | chr4.3:89683284-89683303 | MS.gene34281:intron | 45.0% |
| !! | TGCTGGTTTGAATGTGGAGA+TGG | + | chr4.3:89684741-89684760 | MS.gene34281:CDS | 45.0% |
| AAAGCAGTCGCGAACACATG+AGG | - | chr4.3:89683934-89683953 | None:intergenic | 50.0% | |
| AACTTGCACAATGTGCTGGG+AGG | + | chr4.3:89682690-89682709 | MS.gene34281:intron | 50.0% | |
| AAGTGCAGGGGAAGAGAAAG+AGG | - | chr4.3:89683993-89684012 | None:intergenic | 50.0% | |
| AGTGCAGGGGAAGAGAAAGA+GGG | - | chr4.3:89683992-89684011 | None:intergenic | 50.0% | |
| CAAGCCGGTACCTATACACA+AGG | - | chr4.3:89685453-89685472 | None:intergenic | 50.0% | |
| CCCTACAAGCAGCACACTAT+TGG | - | chr4.3:89685592-89685611 | None:intergenic | 50.0% | |
| CTGCAGGTGGACAAATCTGA+TGG | + | chr4.3:89683717-89683736 | MS.gene34281:CDS | 50.0% | |
| GAACAAAGTGTGCCAGAGGA+TGG | - | chr4.3:89682746-89682765 | None:intergenic | 50.0% | |
| GAAGATACTCTGCTGCAAGC+TGG | + | chr4.3:89684824-89684843 | MS.gene34281:CDS | 50.0% | |
| GGTGCAATATGTCTGTCACG+TGG | + | chr4.3:89685612-89685631 | MS.gene34281:CDS | 50.0% | |
| GGTTGAGCACAATCAACTGC+AGG | + | chr4.3:89683701-89683720 | MS.gene34281:CDS | 50.0% | |
| GTTGAGGCTGTGTGTCTAAG+AGG | + | chr4.3:89683253-89683272 | MS.gene34281:intron | 50.0% | |
| TCTCCCTGGATGTTGCAGAA+TGG | + | chr4.3:89683573-89683592 | MS.gene34281:intron | 50.0% | |
| TCTGGCTGGCGAATAAGACA+AGG | + | chr4.3:89684369-89684388 | MS.gene34281:CDS | 50.0% | |
| TGAGCACAATCAACTGCAGG+TGG | + | chr4.3:89683704-89683723 | MS.gene34281:CDS | 50.0% | |
| TGCAGAGTCAAACCATCCTC+TGG | + | chr4.3:89682731-89682750 | MS.gene34281:intron | 50.0% | |
| TTGGAAATTGTGGGAGGGGA+AGG | + | chr4.3:89683803-89683822 | MS.gene34281:CDS | 50.0% | |
| !! | GAGAAGTGCCCATGCTTGAT+AGG | + | chr4.3:89683397-89683416 | MS.gene34281:intron | 50.0% |
| !! | GCCAATAGTGTGCTGCTTGT+AGG | + | chr4.3:89685588-89685607 | MS.gene34281:CDS | 50.0% |
| !! | TGTATAGGTACCGGCTTGCT+TGG | + | chr4.3:89685455-89685474 | MS.gene34281:intron | 50.0% |
| AGAGAAAGAGGGCGGGGATA+TGG | - | chr4.3:89683981-89684000 | None:intergenic | 55.0% | |
| GGGCCATTCTGCAACATCCA+GGG | - | chr4.3:89683579-89683598 | None:intergenic | 55.0% | |
| TCACGTGGTCACTCTAGCCT+AGG | + | chr4.3:89685627-89685646 | MS.gene34281:CDS | 55.0% | |
| AGGGGAAGAGAAAGAGGGCG+GGG | - | chr4.3:89683987-89684006 | None:intergenic | 60.0% | |
| CAGGGGAAGAGAAAGAGGGC+GGG | - | chr4.3:89683988-89684007 | None:intergenic | 60.0% | |
| GCAGGGGAAGAGAAAGAGGG+CGG | - | chr4.3:89683989-89684008 | None:intergenic | 60.0% | |
| GGGGCCATTCTGCAACATCC+AGG | - | chr4.3:89683580-89683599 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 89682381 | 89685693 | 89682381 | ID=MS.gene34281 |
| chr4.3 | mRNA | 89682381 | 89685693 | 89682381 | ID=MS.gene34281.t1;Parent=MS.gene34281 |
| chr4.3 | exon | 89682381 | 89682525 | 89682381 | ID=MS.gene34281.t1.exon1;Parent=MS.gene34281.t1 |
| chr4.3 | CDS | 89682381 | 89682525 | 89682381 | ID=cds.MS.gene34281.t1;Parent=MS.gene34281.t1 |
| chr4.3 | exon | 89683591 | 89683851 | 89683591 | ID=MS.gene34281.t1.exon2;Parent=MS.gene34281.t1 |
| chr4.3 | CDS | 89683591 | 89683851 | 89683591 | ID=cds.MS.gene34281.t1;Parent=MS.gene34281.t1 |
| chr4.3 | exon | 89684309 | 89684390 | 89684309 | ID=MS.gene34281.t1.exon3;Parent=MS.gene34281.t1 |
| chr4.3 | CDS | 89684309 | 89684390 | 89684309 | ID=cds.MS.gene34281.t1;Parent=MS.gene34281.t1 |
| chr4.3 | exon | 89684695 | 89684891 | 89684695 | ID=MS.gene34281.t1.exon4;Parent=MS.gene34281.t1 |
| chr4.3 | CDS | 89684695 | 89684891 | 89684695 | ID=cds.MS.gene34281.t1;Parent=MS.gene34281.t1 |
| chr4.3 | exon | 89685462 | 89685693 | 89685462 | ID=MS.gene34281.t1.exon5;Parent=MS.gene34281.t1 |
| chr4.3 | CDS | 89685462 | 89685693 | 89685462 | ID=cds.MS.gene34281.t1;Parent=MS.gene34281.t1 |
| Gene Sequence |
| Protein sequence |
